Query psy14360
Match_columns 471
No_of_seqs 286 out of 2501
Neff 8.9
Searched_HMMs 46136
Date Fri Aug 16 17:55:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14360.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14360hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1304|consensus 100.0 2.9E-50 6.4E-55 396.9 16.7 279 2-284 145-429 (449)
2 PTZ00206 amino acid transporte 100.0 2.1E-36 4.5E-41 312.1 10.3 258 3-267 143-426 (467)
3 KOG1303|consensus 100.0 5.3E-34 1.1E-38 286.6 11.0 272 5-282 129-414 (437)
4 PF01490 Aa_trans: Transmembra 100.0 3.2E-35 6.9E-40 300.6 -0.4 267 2-270 89-374 (409)
5 PLN03074 auxin influx permease 100.0 1.1E-33 2.5E-38 290.5 10.9 286 3-302 142-455 (473)
6 KOG4303|consensus 100.0 2E-32 4.3E-37 255.1 -0.2 256 5-268 210-480 (524)
7 KOG1304|consensus 100.0 5.3E-30 1.1E-34 253.4 3.8 175 273-461 127-317 (449)
8 KOG1305|consensus 99.9 2.1E-28 4.6E-33 245.0 8.9 260 7-270 93-375 (411)
9 KOG1303|consensus 99.8 3.4E-20 7.3E-25 186.9 4.6 162 292-471 143-309 (437)
10 PTZ00206 amino acid transporte 99.7 1.5E-17 3.3E-22 171.9 4.5 134 326-462 185-333 (467)
11 PF01490 Aa_trans: Transmembra 99.7 9.1E-17 2E-21 164.3 9.2 143 320-462 121-269 (409)
12 PLN03074 auxin influx permease 99.7 2E-17 4.3E-22 170.5 2.8 140 319-461 166-308 (473)
13 KOG4303|consensus 99.7 3.3E-18 7.1E-23 160.4 -3.4 145 320-467 235-381 (524)
14 COG0814 SdaC Amino acid permea 99.6 2.1E-15 4.5E-20 153.3 11.8 260 3-268 94-381 (415)
15 KOG1305|consensus 99.4 3.6E-14 7.9E-19 142.6 1.5 139 326-465 131-273 (411)
16 COG0814 SdaC Amino acid permea 99.0 1.4E-10 3.1E-15 118.1 3.4 157 290-462 108-269 (415)
17 TIGR00837 araaP aromatic amino 99.0 1.4E-09 3.1E-14 110.2 10.0 251 6-269 84-358 (381)
18 PF03222 Trp_Tyr_perm: Tryptop 98.5 9.7E-07 2.1E-11 89.5 12.7 252 5-268 89-363 (394)
19 PRK10483 tryptophan permease; 98.2 9.4E-06 2E-10 82.0 10.0 254 5-269 97-372 (414)
20 PRK15132 tyrosine transporter 98.1 2.8E-05 6E-10 78.8 11.3 248 6-268 90-360 (403)
21 TIGR00814 stp serine transport 98.0 0.00012 2.7E-09 74.2 15.0 258 8-268 93-377 (397)
22 PRK09664 tryptophan permease T 97.8 0.00015 3.3E-09 73.3 11.1 250 6-268 96-372 (415)
23 PRK13629 threonine/serine tran 97.4 0.0021 4.6E-08 65.3 13.3 167 99-268 211-413 (443)
24 TIGR00909 2A0306 amino acid tr 97.1 0.008 1.7E-07 61.9 13.6 154 47-207 144-307 (429)
25 PRK11021 putative transporter; 97.0 0.017 3.7E-07 59.2 15.3 55 96-153 176-231 (410)
26 PRK10197 gamma-aminobutyrate t 96.5 0.15 3.2E-06 52.9 17.7 166 97-269 181-367 (446)
27 PF13520 AA_permease_2: Amino 96.5 0.015 3.3E-07 59.7 10.3 111 96-210 187-304 (426)
28 PRK10249 phenylalanine transpo 96.5 0.041 8.8E-07 57.3 13.4 169 96-268 208-393 (458)
29 TIGR01773 GABAperm gamma-amino 96.4 0.19 4.2E-06 52.1 17.9 53 98-153 202-255 (452)
30 PRK10655 potE putrescine trans 96.4 0.045 9.7E-07 56.6 13.1 55 98-155 190-245 (438)
31 TIGR00906 2A0303 cationic amin 96.4 0.047 1E-06 58.3 13.1 55 97-154 231-286 (557)
32 PRK10238 aromatic amino acid t 96.4 0.1 2.2E-06 54.3 15.3 168 98-269 201-385 (456)
33 TIGR03813 put_Glu_GABA_T putat 96.4 0.18 4E-06 52.6 17.4 51 105-158 202-253 (474)
34 PRK10435 cadB lysine/cadaverin 96.3 0.037 8E-07 57.2 11.5 60 96-158 186-246 (435)
35 TIGR03810 arg_ornith_anti argi 96.2 0.086 1.9E-06 55.0 14.1 163 98-268 196-378 (468)
36 KOG1287|consensus 96.2 0.12 2.6E-06 53.0 14.1 163 95-268 202-384 (479)
37 PRK10746 putative transport pr 96.1 0.17 3.7E-06 52.7 15.1 170 96-269 199-387 (461)
38 TIGR00837 araaP aromatic amino 96.0 0.0048 1E-07 62.6 3.3 121 325-449 116-240 (381)
39 TIGR00908 2A0305 ethanolamine 95.9 0.082 1.8E-06 54.7 12.0 52 98-152 192-244 (442)
40 PRK10644 arginine:agmatin anti 95.9 0.075 1.6E-06 55.1 11.6 55 98-155 192-247 (445)
41 PRK15049 L-asparagine permease 95.9 0.42 9.1E-06 50.3 17.2 163 102-268 225-404 (499)
42 PRK11049 D-alanine/D-serine/gl 95.8 0.17 3.7E-06 52.8 13.8 55 98-155 212-267 (469)
43 TIGR00905 2A0302 transporter, 95.6 0.33 7.1E-06 50.8 15.2 56 98-156 200-255 (473)
44 TIGR03428 ureacarb_perm permea 95.4 0.27 5.8E-06 51.5 13.7 49 102-153 218-267 (475)
45 TIGR00910 2A0307_GadC glutamat 95.4 0.53 1.2E-05 49.6 16.0 48 102-152 199-247 (507)
46 PRK11357 frlA putative fructos 95.4 0.22 4.7E-06 51.6 12.9 55 97-154 195-250 (445)
47 PRK10580 proY putative proline 95.4 0.4 8.7E-06 49.8 14.9 53 98-153 200-253 (457)
48 COG0531 PotE Amino acid transp 95.4 0.32 7E-06 50.4 14.1 60 98-160 202-262 (466)
49 TIGR00930 2a30 K-Cl cotranspor 95.3 0.65 1.4E-05 52.6 17.1 52 99-153 282-334 (953)
50 PRK11387 S-methylmethionine tr 95.3 0.31 6.8E-06 50.9 13.8 53 99-154 208-261 (471)
51 TIGR00913 2A0310 amino acid pe 95.3 0.81 1.8E-05 47.8 16.6 54 97-153 197-251 (478)
52 TIGR00911 2A0308 L-type amino 94.6 0.16 3.4E-06 53.5 9.3 56 97-155 235-291 (501)
53 PRK15238 inner membrane transp 94.5 1.4 3.1E-05 46.2 16.2 53 99-154 213-266 (496)
54 TIGR00907 2A0304 amino acid pe 94.5 1.4 2.9E-05 46.2 15.9 44 103-149 223-267 (482)
55 PRK10836 lysine transporter; P 94.3 1.1 2.3E-05 47.1 14.7 49 103-154 211-260 (489)
56 PRK11021 putative transporter; 93.9 0.11 2.5E-06 53.1 6.3 56 383-441 175-231 (410)
57 TIGR00912 2A0309 spore germina 92.8 1.2 2.6E-05 44.6 11.5 202 50-268 129-352 (359)
58 KOG1286|consensus 91.8 8.1 0.00018 41.1 16.5 110 96-208 231-350 (554)
59 TIGR00906 2A0303 cationic amin 91.8 0.34 7.5E-06 51.7 6.4 56 384-442 230-286 (557)
60 TIGR00909 2A0306 amino acid tr 90.9 0.36 7.8E-06 49.6 5.4 58 383-443 193-251 (429)
61 TIGR02358 thia_cytX probable h 90.0 11 0.00023 38.3 15.0 139 15-160 92-233 (386)
62 PF13520 AA_permease_2: Amino 88.1 0.43 9.4E-06 48.9 3.5 63 382-448 185-247 (426)
63 KOG1289|consensus 87.2 9.1 0.0002 40.0 12.1 104 55-161 196-314 (550)
64 PRK10435 cadB lysine/cadaverin 87.0 0.66 1.4E-05 47.9 4.0 60 384-446 186-246 (435)
65 COG1113 AnsP Gamma-aminobutyra 87.0 5.1 0.00011 40.9 10.0 170 95-269 201-388 (462)
66 PRK11357 frlA putative fructos 85.9 1.3 2.7E-05 45.9 5.4 55 384-441 194-249 (445)
67 TIGR00912 2A0309 spore germina 85.8 0.63 1.4E-05 46.6 3.1 57 393-452 187-243 (359)
68 COG1457 CodB Purine-cytosine p 84.7 36 0.00078 35.0 15.0 196 32-244 127-328 (442)
69 PF03222 Trp_Tyr_perm: Tryptop 83.6 0.69 1.5E-05 47.1 2.2 55 381-438 180-235 (394)
70 TIGR00911 2A0308 L-type amino 83.3 1.9 4.1E-05 45.4 5.4 57 384-443 234-291 (501)
71 COG0531 PotE Amino acid transp 82.9 1.4 3E-05 45.7 4.2 61 385-448 201-262 (466)
72 PRK10483 tryptophan permease; 82.4 1.5 3.4E-05 44.6 4.1 52 384-438 191-243 (414)
73 PRK10655 potE putrescine trans 82.4 2.1 4.4E-05 44.2 5.2 56 385-443 189-245 (438)
74 PF00324 AA_permease: Amino ac 82.4 2.8 6.1E-05 43.8 6.3 61 96-159 199-260 (478)
75 PRK10197 gamma-aminobutyrate t 82.3 2.1 4.7E-05 44.3 5.3 56 383-441 179-235 (446)
76 COG0833 LysP Amino acid transp 82.3 62 0.0014 34.0 15.6 166 96-268 233-426 (541)
77 TIGR00814 stp serine transport 81.9 1.1 2.3E-05 45.8 2.7 65 384-448 185-254 (397)
78 PRK15132 tyrosine transporter 81.8 1.1 2.5E-05 45.6 2.9 55 386-443 182-237 (403)
79 TIGR00910 2A0307_GadC glutamat 81.2 2.3 4.9E-05 44.9 5.1 47 390-439 199-246 (507)
80 TIGR00908 2A0305 ethanolamine 80.4 2 4.3E-05 44.4 4.3 52 386-440 192-244 (442)
81 PRK10644 arginine:agmatin anti 80.0 3.2 6.8E-05 43.0 5.6 56 385-443 191-247 (445)
82 PRK10249 phenylalanine transpo 79.4 2.4 5.3E-05 44.0 4.6 57 382-441 206-263 (458)
83 TIGR00905 2A0302 transporter, 77.1 3.5 7.5E-05 43.1 4.9 58 384-444 198-255 (473)
84 TIGR00800 ncs1 NCS1 nucleoside 77.0 32 0.0007 35.5 12.0 49 111-162 222-274 (442)
85 TIGR01773 GABAperm gamma-amino 76.6 4.5 9.8E-05 41.9 5.6 55 384-441 200-255 (452)
86 TIGR03810 arg_ornith_anti argi 75.0 2.6 5.7E-05 43.9 3.4 60 385-447 195-254 (468)
87 PF03845 Spore_permease: Spore 75.0 6 0.00013 38.9 5.8 115 43-161 120-236 (320)
88 PF00324 AA_permease: Amino ac 74.1 5.3 0.00012 41.7 5.4 64 384-450 199-263 (478)
89 PRK15238 inner membrane transp 74.0 7.6 0.00016 40.8 6.5 51 387-440 213-264 (496)
90 KOG1286|consensus 73.7 25 0.00055 37.4 10.2 54 384-440 231-285 (554)
91 PF03845 Spore_permease: Spore 73.6 3 6.6E-05 41.0 3.2 114 337-453 126-240 (320)
92 PRK11375 allantoin permease; P 72.1 1.1E+02 0.0023 32.2 14.4 91 113-209 244-341 (484)
93 PRK10238 aromatic amino acid t 71.6 4.8 0.0001 41.8 4.3 51 385-438 200-251 (456)
94 TIGR00913 2A0310 amino acid pe 71.3 6.2 0.00013 41.2 5.1 54 384-440 196-250 (478)
95 TIGR03428 ureacarb_perm permea 71.3 7.6 0.00016 40.5 5.7 56 389-447 217-273 (475)
96 PRK09664 tryptophan permease T 71.3 4.5 9.7E-05 41.3 3.8 48 386-436 194-242 (415)
97 PRK11049 D-alanine/D-serine/gl 68.8 3.3 7.1E-05 43.2 2.3 56 384-442 210-266 (469)
98 TIGR00930 2a30 K-Cl cotranspor 68.4 12 0.00026 42.7 6.8 51 387-440 282-333 (953)
99 TIGR03813 put_Glu_GABA_T putat 67.6 5.7 0.00012 41.5 3.8 52 393-447 202-254 (474)
100 PRK09442 panF sodium/panthothe 67.5 1.2E+02 0.0026 31.7 13.8 38 33-70 156-193 (483)
101 KOG1287|consensus 67.0 22 0.00048 36.8 7.7 58 383-443 202-260 (479)
102 PRK11387 S-methylmethionine tr 66.4 4.3 9.2E-05 42.4 2.6 54 386-442 207-261 (471)
103 PRK15049 L-asparagine permease 66.0 6.8 0.00015 41.3 4.1 55 389-446 224-279 (499)
104 PRK10580 proY putative proline 65.1 5 0.00011 41.7 2.8 54 384-440 198-252 (457)
105 PRK10836 lysine transporter; P 62.0 7.2 0.00016 40.9 3.3 55 389-446 209-264 (489)
106 TIGR00907 2A0304 amino acid pe 60.9 34 0.00073 35.7 8.2 48 389-439 221-269 (482)
107 PRK10746 putative transport pr 59.2 6.9 0.00015 40.7 2.6 56 383-441 198-254 (461)
108 TIGR00796 livcs branched-chain 52.8 1.3E+02 0.0029 30.4 10.4 42 114-157 198-243 (378)
109 TIGR02119 panF sodium/pantothe 49.7 2.6E+02 0.0055 29.1 12.5 38 33-70 155-192 (471)
110 PLN02680 carbon-monoxide oxyge 48.7 2.3E+02 0.005 26.5 10.9 96 95-201 48-143 (232)
111 COG1914 MntH Mn2+ and Fe2+ tra 47.2 3.4E+02 0.0073 27.9 16.4 57 220-276 324-384 (416)
112 TIGR00813 sss transporter, SSS 46.4 1.2E+02 0.0025 30.9 9.2 38 33-70 114-151 (407)
113 PRK15419 proline:sodium sympor 42.3 2.9E+02 0.0062 29.1 11.5 37 33-69 158-194 (502)
114 COG0591 PutP Na+/proline sympo 40.3 3.7E+02 0.0081 28.2 11.9 27 39-65 159-185 (493)
115 PF00474 SSF: Sodium:solute sy 39.1 49 0.0011 33.6 5.1 42 33-74 118-159 (406)
116 COG3949 Uncharacterized membra 38.4 4.1E+02 0.0088 26.4 11.9 20 112-131 194-213 (349)
117 PRK13629 threonine/serine tran 35.3 29 0.00063 35.7 2.6 62 386-447 210-279 (443)
118 KOG3832|consensus 32.5 51 0.0011 30.0 3.4 91 36-127 210-303 (319)
119 PRK11017 codB cytosine permeas 30.7 5.9E+02 0.013 25.9 13.8 46 112-160 199-244 (404)
120 PHA02680 ORF090 IMV phosphoryl 30.3 97 0.0021 23.9 4.0 61 389-453 15-75 (91)
121 PF00209 SNF: Sodium:neurotran 25.0 95 0.0021 32.9 4.5 37 95-131 247-284 (523)
122 COG1113 AnsP Gamma-aminobutyra 23.3 48 0.001 34.1 1.8 69 381-452 199-273 (462)
123 PRK13183 psbN photosystem II r 23.3 96 0.0021 20.9 2.5 28 135-162 7-34 (46)
124 PHA03048 IMV membrane protein; 23.3 1.2E+02 0.0026 23.5 3.4 61 388-453 14-74 (93)
125 COG3476 Tryptophan-rich sensor 22.6 1.1E+02 0.0023 26.9 3.5 49 399-452 25-74 (161)
126 PF02468 PsbN: Photosystem II 21.7 1.2E+02 0.0027 20.1 2.8 27 136-162 5-31 (43)
127 KOG1619|consensus 20.6 3.4E+02 0.0073 25.5 6.4 97 95-202 56-153 (245)
128 CHL00020 psbN photosystem II p 20.4 1E+02 0.0022 20.4 2.2 27 135-161 4-30 (43)
No 1
>KOG1304|consensus
Probab=100.00 E-value=2.9e-50 Score=396.89 Aligned_cols=279 Identities=42% Similarity=0.676 Sum_probs=262.9
Q ss_pred EEeeeecccchhhHHhhHhhHHHHHHhhc-cCcchHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHhheeeeee
Q psy14360 2 FVIITQLGFCCVYFVFVAQSSHQICLALD-IDYKLHYHMAIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYI 80 (471)
Q Consensus 2 ~i~~~~~G~~~~y~i~~~~~l~~~~~~~~-~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~S~~~~~~~~~~~~~v~~~~ 80 (471)
+++++|+|.|++|+++++|+++++.+... .+++.+.|+++.+++.+|++++||+|+|+++|.+|.++.+++.+++++|.
T Consensus 145 ~L~i~QlGfc~vY~VFva~nl~~i~~~~~~~~~s~~~~i~~~~~~~lll~~Ir~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~ 224 (449)
T KOG1304|consen 145 FLVITQLGFCCVYLVFVATNLKQIVDEHSPGVLSVRLYILIQLPPLLLLNLIRNLKILSPFSLFANVFILVGLAIIMYYL 224 (449)
T ss_pred HHHHHHhchhhEEeeeHHhhHHHHHhccCCCCccHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999433 67899999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCccccccchhHHHHHHHHhhccceeeecchhhcccccCCCcccchhhhHHHHHHHHHHHHhhhhhhcccC
Q psy14360 81 LQDLPPVSTRNYVGHIQQIPLFFGTVIFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGE 160 (471)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~ 160 (471)
+++.++.++.+.+.++++++.++|+.+|||+|++++.|+|++||+|++|...+|+++.+|.+++++|+.+|++||++|||
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~ 304 (449)
T KOG1304|consen 225 VQDLPPTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKPQKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGD 304 (449)
T ss_pred HhccCCccccccccchhhhHHHHHHHHHHhccceEEEehhhcccChhhcCCccchHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999888999988899999999999999999999999999999999999666699999999999999999999999999
Q ss_pred ccccceeeecCCCCCChHHHHHHHHHHHHHHHhhccccchhHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHHHHHHh
Q psy14360 161 NVKGSITLNLSDRKDDPLALVVVGSIGFGILCTYSLQFYVPVAIIWAELEEKYGPFKHPAFGETILRVSLVLLTCKLALV 240 (471)
Q Consensus 161 ~~~~~il~nl~~~~~~~~~~v~~~~~~l~l~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~ 240 (471)
++++.|++|+|+ +++.+.+|+++++++++|||||+||+.|++|+.+.++.++++ +++..+.+|..++.+++++|..
T Consensus 305 ~v~~sITLNLP~---~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~k~~~~~-~~~~~~~~R~~lVllt~~iA~~ 380 (449)
T KOG1304|consen 305 DVKGSITLNLPQ---EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRKKFSENR-KKLLEYALRVFLVLLTFLIAVA 380 (449)
T ss_pred cccceEEecCCc---cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHHhcCcch-hHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998 899999999999999999999999999999999988877555 4589999999999999999999
Q ss_pred hcch----hhhhhhhhhhhHhhhhhHHHHhhh-ccccCccccccccccc
Q psy14360 241 VVGS----IGFGILCTYSLQFYVPVAIIWAEL-EEKYGPFKHPAFVPAS 284 (471)
Q Consensus 241 ip~~----slvGs~~~~~l~fi~P~l~~l~~~-~~~~g~~~~~~~~~~~ 284 (471)
+||+ +|+||++++.+++++|++++++.+ +++.|+.+|+.+.+..
T Consensus 381 iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~ 429 (449)
T KOG1304|consen 381 VPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIV 429 (449)
T ss_pred CCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHH
Confidence 9998 999999999999999999999999 6766888888888754
No 2
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=2.1e-36 Score=312.11 Aligned_cols=258 Identities=16% Similarity=0.173 Sum_probs=209.4
Q ss_pred EeeeecccchhhHHhhHhhHHHHHHhhc-cC-----cchH-HHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHhhe
Q psy14360 3 VIITQLGFCCVYFVFVAQSSHQICLALD-ID-----YKLH-YHMAIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAA 75 (471)
Q Consensus 3 i~~~~~G~~~~y~i~~~~~l~~~~~~~~-~~-----~~~~-~~~~i~~~~~~pl~~~~~l~~l~~~S~~~~~~~~~~~~~ 75 (471)
++++++|+|++|++++||+++++++... ++ .+.| .+..++.++++|++++|++++|+++|.+|++++++.++.
T Consensus 143 ~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~~~~i~~~vi~ 222 (467)
T PTZ00206 143 RAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVSTIAVSFMVYLVIV 222 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHHHHHHHHHHHHHhh
Confidence 4568999999999999999999986532 11 1122 334556778899999999999999999999988877766
Q ss_pred eeeeecc-cCCCC-C----------CCCccccccchhHHHHHHHHhhccceeeecchhhcccc--cCCCcccchhhhHHH
Q psy14360 76 IYYYILQ-DLPPV-S----------TRNYVGHIQQIPLFFGTVIFAFEGIALVLPLQREMKKK--KNFNSSFGVLNMGSI 141 (471)
Q Consensus 76 v~~~~~~-~~~~~-~----------~~~~~~~~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p--~~~~~~~~v~~~s~~ 141 (471)
++++... +.++. + +.+.+....+.+.++|+++|||.||.+.+++++||||| +|+.+ ++..++.
T Consensus 223 ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~~~---v~~~s~~ 299 (467)
T PTZ00206 223 IVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKFVL---ASTIAMG 299 (467)
T ss_pred hhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHHHH---HHHHHHH
Confidence 6554442 22211 1 11122223457789999999999999999999999986 56777 8999999
Q ss_pred HHHHHHHHHhhhhhhcccCccccceeeec-CCCCCChHHHHHHHHHHHHHHHhhccccchhHHHHHHHHhhhcCCCChhh
Q psy14360 142 LIIALMLSMGFFGYLKYGENVKGSITLNL-SDRKDDPLALVVVGSIGFGILCTYSLQFYVPVAIIWAELEEKYGPFKHPA 220 (471)
Q Consensus 142 ~~~~~Y~~~g~~gY~~fG~~~~~~il~nl-~~~~~~~~~~v~~~~~~l~l~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~ 220 (471)
++.++|..+|++||++||++++++++.|+ |. +++...++++++.+.++++||++.+|+|+.+++.+..+.+ +.++
T Consensus 300 i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~--~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~~~~~~--~~~~ 375 (467)
T PTZ00206 300 MCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPV--NEPAIMVGFVGVLVKLFVSYALLGMACRNALYDVIGWDAR--KVAF 375 (467)
T ss_pred HHHHHHHHHHHhhhhccccccchHHHHhCCCC--CCchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHhCCCcc--cCch
Confidence 99999999999999999999999999999 55 5778889999999999999999999999999988743322 2233
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcch----hhhhhhhhhhhHhhhhhHHHHhh
Q psy14360 221 FGETILRVSLVLLTCKLALVVVGS----IGFGILCTYSLQFYVPVAIIWAE 267 (471)
Q Consensus 221 ~~~~~~r~~~~~~~~~iA~~ip~~----slvGs~~~~~l~fi~P~l~~l~~ 267 (471)
+++...+..+++.+.++|+.+||+ +++||++++.++|++|+++|++.
T Consensus 376 ~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~ 426 (467)
T PTZ00206 376 WKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYS 426 (467)
T ss_pred hhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhc
Confidence 667667777788889999999998 99999999999999999999995
No 3
>KOG1303|consensus
Probab=100.00 E-value=5.3e-34 Score=286.57 Aligned_cols=272 Identities=17% Similarity=0.225 Sum_probs=230.0
Q ss_pred eeecccchhhHHhhHhhHHHHHHhhcc---CcchHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHhheeeeeec
Q psy14360 5 ITQLGFCCVYFVFVAQSSHQICLALDI---DYKLHYHMAIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYIL 81 (471)
Q Consensus 5 ~~~~G~~~~y~i~~~~~l~~~~~~~~~---~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~S~~~~~~~~~~~~~v~~~~~ 81 (471)
+.++|+|++|++..||+++.+.+.... +.+.+.|++++.++.+|++++||++.+++.|..|.+.+.....+..+.+.
T Consensus 129 ~~~fg~~v~y~il~~~~L~~~~~~~~~~~~~l~~~~f~iif~~i~~~~s~lp~~~~l~~~S~~~avmS~~~a~~~~~~g~ 208 (437)
T KOG1303|consen 129 LELFGICVVYIILAGDNLKALFPIVSLNDNSLDKQYFIIIFGLIVLPLSQLPNFHSLSYLSLVGAVMSTLYAVILIVLGI 208 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCccccccceehhhhHHHHHHHHHHCCCcchhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 468999999999999999999998762 34568999999999999999999999999999999887765555544444
Q ss_pred ccCCC---C-CCCCccccccch-hHHHHHHHHhhccceeeecchhhcccccCCCcccchhhhHHHHHHHHHHHHhhhhhh
Q psy14360 82 QDLPP---V-STRNYVGHIQQI-PLFFGTVIFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYL 156 (471)
Q Consensus 82 ~~~~~---~-~~~~~~~~~~~~-~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~ 156 (471)
.++.+ . .+.+.. +..+. +.++|+++|+|.+|..+||||++||+|++|+| ++..++.+++.+|+.+++.||+
T Consensus 209 ~~g~~~~~~~~~~~~~-~~~~~~f~a~g~iaFaf~gH~v~peIq~tMk~p~~f~~---~~lis~~~~~~~y~~vai~GY~ 284 (437)
T KOG1303|consen 209 ADGVGFCAPSGGYLDL-GTIPTVFTALGIIAFAYGGHAVLPEIQHTMKSPPKFKK---ALLISYIIVTFLYFPVAIIGYW 284 (437)
T ss_pred ccccccCCcccCcccC-CCCcchhhhhhheeeeecCCeeeeehHhhcCCchhhhh---HHHHHHHHHHHHHHHHHHhhhh
Confidence 33311 1 111111 22222 68999999999999999999999999999999 9999999999999999999999
Q ss_pred cccCccccceeeecCCCCCChHHHHHHHHHHHHHHHhhccccchhHHHHHHHHhhhcCC-CChhhHHHHHHHHHHHHHHH
Q psy14360 157 KYGENVKGSITLNLSDRKDDPLALVVVGSIGFGILCTYSLQFYVPVAIIWAELEEKYGP-FKHPAFGETILRVSLVLLTC 235 (471)
Q Consensus 157 ~fG~~~~~~il~nl~~~~~~~~~~v~~~~~~l~l~~s~pl~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~r~~~~~~~~ 235 (471)
+|||+++|+++.|+++ +.++...+++++.+|++.++++...|..+.+|+....+.++ +++..+.|.+.|+.+++.++
T Consensus 285 aFG~~~~~~il~s~~~--p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~~~~~~~~~~~~~~R~~~Rt~~v~~~~ 362 (437)
T KOG1303|consen 285 AFGDSVPDNILLSLQP--PTWLIALANILIVLHLIGSYQIYAQPLFDVVEKLIGVKHPDFKKRSLVLRLLVRTFFVAVTT 362 (437)
T ss_pred hhccccchhhhhcccC--chhHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHhccCCccccccccceeeehhhHHHHHHH
Confidence 9999999999999952 36999999999999999999999999999999988754442 22334789999999999999
Q ss_pred HHHHhhcch----hhhhhhhhhhhHhhhhhHHHHhhh-ccccCccccccccc
Q psy14360 236 KLALVVVGS----IGFGILCTYSLQFYVPVAIIWAEL-EEKYGPFKHPAFVP 282 (471)
Q Consensus 236 ~iA~~ip~~----slvGs~~~~~l~fi~P~l~~l~~~-~~~~g~~~~~~~~~ 282 (471)
++|+.+|+| +++||+...++++++|+++|++.+ +++.++.++..+..
T Consensus 363 ~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~~~s~~~~~~~~~ 414 (437)
T KOG1303|consen 363 FVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPKRFSPKWLLNWVI 414 (437)
T ss_pred HHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHh
Confidence 999999999 999999999999999999999998 66667666666655
No 4
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=3.2e-35 Score=300.63 Aligned_cols=267 Identities=23% Similarity=0.331 Sum_probs=224.8
Q ss_pred EEeeeecccchhhHHhhHhhHHHHHHhhcc--CcchHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHhheeeee
Q psy14360 2 FVIITQLGFCCVYFVFVAQSSHQICLALDI--DYKLHYHMAIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYY 79 (471)
Q Consensus 2 ~i~~~~~G~~~~y~i~~~~~l~~~~~~~~~--~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~S~~~~~~~~~~~~~v~~~ 79 (471)
.++++++|.|++|+++++|+++++++.... ..++..+.++..++++|++++|+++++++.|.+|.++....+....+.
T Consensus 89 ~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~~~~~~~~~~~~~~~ 168 (409)
T PF01490_consen 89 CIFIYLFGSCVAYLIIIGDSLSSLIPSFFGDLFISRYVWIIIFALIVLPLSFLKNLKSLRYLSILGLFSIFYFIVIVVIY 168 (409)
T ss_pred hheeccccccceeEEEeeeeeecccccccccccccccccccccccccccccccchhhHHHHHhhhhhhccceeeeeecce
Confidence 467899999999999999999999987653 356677778888899999999999999999999999887642222222
Q ss_pred ecccC----CCCCCCC--ccccccchhHHHHHHHHhhccceeeecchhhcccccCCCcccchhhhHHHHHHHHHHHHhhh
Q psy14360 80 ILQDL----PPVSTRN--YVGHIQQIPLFFGTVIFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFF 153 (471)
Q Consensus 80 ~~~~~----~~~~~~~--~~~~~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~Y~~~g~~ 153 (471)
...+. .+.++.+ ...++.+++.++|+++|||.||.++|++++|||+|+|++|..++...++.++.++|..+|.+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~s~~~~~~~y~~~g~~ 248 (409)
T PF01490_consen 169 IISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKMKKVLSISMIICFIIYLLFGIF 248 (409)
T ss_pred eeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCccccccceeeeehhhhhhHHhhhhhhc
Confidence 22221 1111111 22345688999999999999999999999999999998843339999999999999999999
Q ss_pred hhhcccCccccceeeecCCCCCChHHHHHHHHHHHHHHHhhccccchhHHHHHHHHhhh-------cCCCChhhHHHHHH
Q psy14360 154 GYLKYGENVKGSITLNLSDRKDDPLALVVVGSIGFGILCTYSLQFYVPVAIIWAELEEK-------YGPFKHPAFGETIL 226 (471)
Q Consensus 154 gY~~fG~~~~~~il~nl~~~~~~~~~~v~~~~~~l~l~~s~pl~~~p~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 226 (471)
||++||+++++|+++|+|+ +++...++++++.++++++||++.+|.++.+++.+.++ ..+++.++++|...
T Consensus 249 gy~~fg~~~~~~il~n~~~--~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (409)
T PF01490_consen 249 GYLAFGDSVQGNILLNLPN--DDVLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASSRDSPKNTPSSRWLRYLI 326 (409)
T ss_pred ccceeeeeecchhhhcCCC--cccccccccccchhhhhhccccccchhHhhhhhheeccccccccccccccccceeeeee
Confidence 9999999999999999998 56799999999999999999999999999999998753 12223334788999
Q ss_pred HHHHHHHHHHHHHhhcch----hhhhhhhhhhhHhhhhhHHHHhhhcc
Q psy14360 227 RVSLVLLTCKLALVVVGS----IGFGILCTYSLQFYVPVAIIWAELEE 270 (471)
Q Consensus 227 r~~~~~~~~~iA~~ip~~----slvGs~~~~~l~fi~P~l~~l~~~~~ 270 (471)
|+.+++.+.++|..+||+ +++||++++.++|++|+++|+|.+++
T Consensus 327 ~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~ 374 (409)
T PF01490_consen 327 RIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKR 374 (409)
T ss_pred ecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhcc
Confidence 999999999999999998 99999999999999999999999943
No 5
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=1.1e-33 Score=290.54 Aligned_cols=286 Identities=12% Similarity=0.019 Sum_probs=223.5
Q ss_pred EeeeecccchhhHHhhHhhHHHHHHhhccCcchHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHhheeeeeecc
Q psy14360 3 VIITQLGFCCVYFVFVAQSSHQICLALDIDYKLHYHMAIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYILQ 82 (471)
Q Consensus 3 i~~~~~G~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~S~~~~~~~~~~~~~v~~~~~~ 82 (471)
.+++++|.|+.|++..++++.++. +.++.|.|+.++..+..|++++|++|+++++|.+|+.+++.....++.....
T Consensus 142 ~~v~l~~~~v~~li~~~~~~~~l~----~~~~~~~~~~i~~~v~~~~~~i~sl~~l~~~S~ig~~~tl~~av~i~i~~i~ 217 (473)
T PLN03074 142 NCTFLLFGSVIQLIACASNIYYIN----DNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLLMTTYTAWYMTIAALS 217 (473)
T ss_pred HhhhhHHHHHHHHHHHhhhhhhhC----CCcCCCeEEeehHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456888999999999998887662 3578899998888899999999999999999999988766543333333332
Q ss_pred cC--CCCCCCCccccccchhHHHHHHHHhhccceeeecchhhcccccCCCcccchhhhHHHHHHHHHHHHhhhhhhcccC
Q psy14360 83 DL--PPVSTRNYVGHIQQIPLFFGTVIFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGE 160 (471)
Q Consensus 83 ~~--~~~~~~~~~~~~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~ 160 (471)
+. ++.++ +...+...++.+.++++|+|+||..+|++++|||||+||++ +...++..+...|..+|+.||++|||
T Consensus 218 ~~~~~~~~~-~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P~~F~~---~~~l~~~~v~~~y~~~~~~gY~~fG~ 293 (473)
T PLN03074 218 HGQVEGVKH-SGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKY---IYLAATLYVLTLTLPSAAAVYWAFGD 293 (473)
T ss_pred hcCCCCCCC-CCchhHHHHHHHHHHHHHHhcccccHHHHHHhccChhcccc---hHHHHHHHHHHHHHHHHHeeeeeech
Confidence 21 11111 11112334455566799999999999999999999999999 88899999999999999999999999
Q ss_pred ccc--cceeeecCCCCCChHHHHHHHHHHHHHHHhhccccchhHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHHHHH
Q psy14360 161 NVK--GSITLNLSDRKDDPLALVVVGSIGFGILCTYSLQFYVPVAIIWAELEEKYGPFKHPAFGETILRVSLVLLTCKLA 238 (471)
Q Consensus 161 ~~~--~~il~nl~~~~~~~~~~v~~~~~~l~l~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA 238 (471)
+++ ++.+.|+|+ +.+.++++++++++++.+||++++|..+..|+.+..+ + .++.+.|.++|+.+++.++++|
T Consensus 294 ~~~~~s~~l~~lp~---~~~~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~~~~-~--~k~~~~r~~~R~~lv~~~~~iA 367 (473)
T PLN03074 294 ELLTHSNAFSLLPR---SGWRDAAVILMLIHQFITFGFACTPLYFVWEKAIGVH-D--TKSICLRALARLPVVVPIWFLA 367 (473)
T ss_pred hhhhchhHHhcCCC---chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccc-c--cccHHHHHHHHHHHHHHHHHHH
Confidence 876 456777987 4567899999999999999999999988887765432 2 2234788999999999999999
Q ss_pred Hhhcch----hhhhhhhhhhhHhhhhhHHHHhhh-cc------------ccCccccccccccccc-------cccCcccc
Q psy14360 239 LVVVGS----IGFGILCTYSLQFYVPVAIIWAEL-EE------------KYGPFKHPAFVPASSP-------SLSGTGKN 294 (471)
Q Consensus 239 ~~ip~~----slvGs~~~~~l~fi~P~l~~l~~~-~~------------~~g~~~~~~~~~~~~~-------~v~~~~~~ 294 (471)
+.+|+| ||+||++++.++|++|+++|++++ ++ ..++++|+.+.+.... .+.+++++
T Consensus 368 ~~IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~as 447 (473)
T PLN03074 368 IIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRSASARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWAS 447 (473)
T ss_pred HHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCCcccCCccceehhhhhHHHHhhhhHhhccchHHH
Confidence 999998 999999999999999999999977 32 1333444445543311 24567888
Q ss_pred cccccccc
Q psy14360 295 QQTIPDEI 302 (471)
Q Consensus 295 ~~~i~~~~ 302 (471)
+.++.+.+
T Consensus 448 i~~ii~~~ 455 (473)
T PLN03074 448 MTNFVRQI 455 (473)
T ss_pred HHHHHHhh
Confidence 88887765
No 6
>KOG4303|consensus
Probab=99.97 E-value=2e-32 Score=255.08 Aligned_cols=256 Identities=22% Similarity=0.282 Sum_probs=227.9
Q ss_pred eeecccchhhHHhhHhhHHHHHHhhccCcchHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHhheeeeeecccC
Q psy14360 5 ITQLGFCCVYFVFVAQSSHQICLALDIDYKLHYHMAIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYILQDL 84 (471)
Q Consensus 5 ~~~~G~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~S~~~~~~~~~~~~~v~~~~~~~~ 84 (471)
+.++.+|+.|++..||.++.-++.. +.+++-|+.+....++|.+++|++|..+.+|.++..+-+..-++++.|+....
T Consensus 210 iELlmTCIlYvVv~gdLl~~~fP~~--svd~~sWm~i~~a~LLpc~FLk~Lk~VS~lSf~ct~sH~viN~i~v~YCLs~~ 287 (524)
T KOG4303|consen 210 IELLMTCILYVVVAGDLLQSCFPGL--SVDKASWMMITSASLLPCSFLKDLKIVSRLSFFCTISHLVINLIMVLYCLSFV 287 (524)
T ss_pred HHHHHHHHhhhheechhhhccCCCC--CccccchhhhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3467799999999999999988754 47889999999999999999999999999999999999888888888888766
Q ss_pred CCCC--CCCccccccchhHHHHHHHHhhccceeeecchhhcccccCCCcccchhhhHHHHHHHHHHHHhhhhhhcccCcc
Q psy14360 85 PPVS--TRNYVGHIQQIPLFFGTVIFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENV 162 (471)
Q Consensus 85 ~~~~--~~~~~~~~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~~ 162 (471)
.+|+ .+....+..++|...|+++|+|..|.-+|+++..|+||++|.. .+.|+-+...++-..+|..||++||+.+
T Consensus 288 ~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM~~ps~Fn~---Ml~WsHIAAaVfK~~Fg~~~fLTf~~~T 364 (524)
T KOG4303|consen 288 SDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNMKNPSQFNV---MLKWSHIAAAVFKVVFGMLGFLTFGELT 364 (524)
T ss_pred hhccceeEEEEEEcccCceEEEEEEEeeeceeeccccccccCChhHhee---eeehHHHHHHHHHHHHHHheeeeechhh
Confidence 5553 4444557788999999999999999999999999999999999 8999999999999999999999999999
Q ss_pred ccceeeecCCCCCChHHHHHHHHHHHHHHHhhccccchhHHHHHHHHhhhcCCCC---------hhhHHHHHHHHHHHHH
Q psy14360 163 KGSITLNLSDRKDDPLALVVVGSIGFGILCTYSLQFYVPVAIIWAELEEKYGPFK---------HPAFGETILRVSLVLL 233 (471)
Q Consensus 163 ~~~il~nl~~~~~~~~~~v~~~~~~l~l~~s~pl~~~p~~~~~~~~~~~~~~~~~---------~~~~~~~~~r~~~~~~ 233 (471)
|..|++|+|+ .-+..++++++++..+.||||-++.+.|.+|+-+++..++.. .-+-+...+|..+++.
T Consensus 365 qevItnnLp~---qsfk~~VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~p~t~Fpscys~Dg~Lk~WgltlR~~lvvf 441 (524)
T KOG4303|consen 365 QEVITNNLPN---QSFKILVNLFLVVKALLSYPLPFYAAVELLENNLFLGYPQTPFPSCYSPDGSLKEWGLTLRIILVVF 441 (524)
T ss_pred HHHHhcCCCc---cchhhhhhHHHHHHHHHcCCchHHHHHHHHHHhhhcCCCCCCCceeeCCCcchhhheeeeeeHHHHH
Confidence 9999999997 677889999999999999999999999999998886543321 1123456789999999
Q ss_pred HHHHHHhhcch----hhhhhhhhhhhHhhhhhHHHHhhh
Q psy14360 234 TCKLALVVVGS----IGFGILCTYSLQFYVPVAIIWAEL 268 (471)
Q Consensus 234 ~~~iA~~ip~~----slvGs~~~~~l~fi~P~l~~l~~~ 268 (471)
+.+.|+.+|+| +++|++.++.++|+.|++||+++.
T Consensus 442 TllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik 480 (524)
T KOG4303|consen 442 TLLMAISVPHFVELMGLVGSITGTMLSFIWPALFHLYIK 480 (524)
T ss_pred HHHHHHHhHHHHHHHHhhcccccccHHHHHHHHHHHHHH
Confidence 99999999998 999999999999999999999998
No 7
>KOG1304|consensus
Probab=99.96 E-value=5.3e-30 Score=253.44 Aligned_cols=175 Identities=44% Similarity=0.720 Sum_probs=159.8
Q ss_pred CccccccccccccccccCc----------------ccccccccccccceeEEEEEEeeecccccchHHHHHHHHHHHHHH
Q psy14360 273 GPFKHPAFVPASSPSLSGT----------------GKNQQTIPDEIWSVVTITAVQICLALDIDYKLHYHMAIMLAPILF 336 (471)
Q Consensus 273 g~~~~~~~~~~~~~~v~~~----------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p 336 (471)
|+.+.|.++.+++..++.. ++|++++.|.... .+++.+.|+++..+++++
T Consensus 127 ~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~--------------~~~s~~~~i~~~~~~~ll 192 (449)
T KOG1304|consen 127 GPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSP--------------GVLSVRLYILIQLPPLLL 192 (449)
T ss_pred CcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCC--------------CCccHHHHHHHHHHHHHH
Confidence 4445777777777766533 8899999885444 688999999999999999
Q ss_pred hhcccCCcchhHHHHHHHHHHHHhhheEEEEeccCCCCCccCcccccccchhhhhhhHhhhccccccchhhHHhhhcCCC
Q psy14360 337 TAMIRNLKYIAPISAVANLIMGLGIAAIYYYILQDLPPVSTRNYVGHIQQIPLFFGTVIFAFEGIALVLPLQREMKKKKN 416 (471)
Q Consensus 337 l~~~~~l~~ls~~S~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~faf~~~~~~~~i~~~M~~p~~ 416 (471)
++++||+|+|+++|++|++.+++++.++++|..++.++.++.+...++++++.++|+.+|||||++++.|+||+||||++
T Consensus 193 l~~Ir~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P~~ 272 (449)
T KOG1304|consen 193 LNLIRNLKILSPFSLFANVFILVGLAIIMYYLVQDLPPTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKPQK 272 (449)
T ss_pred HHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHhccCCccccccccchhhhHHHHHHHHHHhccceEEEehhhcccChhh
Confidence 99999999999999999999999999999999999998888888888999999999999999999999999999999999
Q ss_pred CCcccchhhhHHHHHHHHHHHHHhhhhhhccCccccceeeccCCC
Q psy14360 417 FNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGSITLNLSDR 461 (471)
Q Consensus 417 f~~~~~vl~~~~~~~~~~y~~~g~~gY~~fG~~~~~~i~~~~p~~ 461 (471)
|+.+.|+++.++.+++++|..+|.+||++||||++++||.|+|++
T Consensus 273 F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~~ 317 (449)
T KOG1304|consen 273 FPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQE 317 (449)
T ss_pred cCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCcc
Confidence 997777999999999999999999999999999999999999973
No 8
>KOG1305|consensus
Probab=99.95 E-value=2.1e-28 Score=244.96 Aligned_cols=260 Identities=19% Similarity=0.229 Sum_probs=213.5
Q ss_pred ecccchhhHHhhHhhHHHHHHhhc-cCc-----chH-H-HHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHhheeee
Q psy14360 7 QLGFCCVYFVFVAQSSHQICLALD-IDY-----KLH-Y-HMAIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYY 78 (471)
Q Consensus 7 ~~G~~~~y~i~~~~~l~~~~~~~~-~~~-----~~~-~-~~~i~~~~~~pl~~~~~l~~l~~~S~~~~~~~~~~~~~v~~ 78 (471)
..| |++|++++||.++....... .++ .+| . |++....++.|+++.|++++|++.|.++.++....+..+.+
T Consensus 93 ~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~tS~~s~~~~~~fv~~vv~ 171 (411)
T KOG1305|consen 93 GVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLLKNLDSLKYTSALSLASVVYFVVLVVY 171 (411)
T ss_pred hcc-ceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344 69999999999997766543 222 222 2 46778889999999999999999999999999988887777
Q ss_pred eecccCC---CC-CCCCccccccchhHHHHHHHHhhccceeeecchhhcccccC--CCcccchhhhHHHHHHHHHHHHhh
Q psy14360 79 YILQDLP---PV-STRNYVGHIQQIPLFFGTVIFAFEGIALVLPLQREMKKKKN--FNSSFGVLNMGSILIIALMLSMGF 152 (471)
Q Consensus 79 ~~~~~~~---~~-~~~~~~~~~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~--~~~~~~v~~~s~~~~~~~Y~~~g~ 152 (471)
+.+.... +. .+.+....++++...+++++|+|.||.+..++++|||||++ +++ +...+...+..+|..+|.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~---v~~~~~~~~~~iy~~~g~ 248 (411)
T KOG1305|consen 172 KYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQR---VSNIAIILATLIYLLTGL 248 (411)
T ss_pred HHHhcccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 7666432 11 11222222257888999999999999999999999999964 666 899999999999999999
Q ss_pred hhhhcccCccccceeeecCCCCCC----hHHHHHHHHHHHHHHHhhccccchhHHHHHHHHhhhcCC-CChhhHHHHHHH
Q psy14360 153 FGYLKYGENVKGSITLNLSDRKDD----PLALVVVGSIGFGILCTYSLQFYVPVAIIWAELEEKYGP-FKHPAFGETILR 227 (471)
Q Consensus 153 ~gY~~fG~~~~~~il~nl~~~~~~----~~~~v~~~~~~l~l~~s~pl~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~r 227 (471)
+||+.|||++++|++.++|++.+. .....++..+.++.+.++|++.+|.|..+++.+.++.++ ++....++.+++
T Consensus 249 ~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~~~~~~~~~~~~s~~r~~~it 328 (411)
T KOG1305|consen 249 FGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDELLFPYQPGLTSFSGKRHFVIT 328 (411)
T ss_pred hhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhcccCCCCCCccceehhHHH
Confidence 999999999999999999883211 235799999999999999999999999998888765443 233336678999
Q ss_pred HHHHHHHHHHHHhhcch----hhhhhhhhhhhHhhhhhHHHHhhhcc
Q psy14360 228 VSLVLLTCKLALVVVGS----IGFGILCTYSLQFYVPVAIIWAELEE 270 (471)
Q Consensus 228 ~~~~~~~~~iA~~ip~~----slvGs~~~~~l~fi~P~l~~l~~~~~ 270 (471)
..++..+.+.|+.+|++ +++||++++.++|++|+++|++..++
T Consensus 329 l~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~ 375 (411)
T KOG1305|consen 329 LLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYYLKASKK 375 (411)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhhheeecc
Confidence 99999999999999998 99999999999999999999998854
No 9
>KOG1303|consensus
Probab=99.79 E-value=3.4e-20 Score=186.92 Aligned_cols=162 Identities=21% Similarity=0.283 Sum_probs=124.9
Q ss_pred ccccccccccccceeEEEEEEeeecccc-cchHHHHHHHHHHHHHHhhcccCCcchhHHHHHHHHHHHHhhheEEEEecc
Q psy14360 292 GKNQQTIPDEIWSVVTITAVQICLALDI-DYKLHYHMAIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYILQ 370 (471)
Q Consensus 292 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~pl~~~~~l~~ls~~S~~~~~~~~~~~~ii~~~~~~ 370 (471)
++|++.+.+.++.. . .++.+.|+.++.++.+|++++||++.+++.|..|++..+....+..+.+..
T Consensus 143 ~~~L~~~~~~~~~~-------------~~~l~~~~f~iif~~i~~~~s~lp~~~~l~~~S~~~avmS~~~a~~~~~~g~~ 209 (437)
T KOG1303|consen 143 GDNLKALFPIVSLN-------------DNSLDKQYFIIIFGLIVLPLSQLPNFHSLSYLSLVGAVMSTLYAVILIVLGIA 209 (437)
T ss_pred HHHHHHHHHhcCCc-------------cccccceehhhhHHHHHHHHHHCCCcchhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 66666666665551 1 455778999999999999999999999999999999776444343333332
Q ss_pred CC-CCCcc-Cc--ccccccchhhhhhhHhhhccccccchhhHHhhhcCCCCCcccchhhhHHHHHHHHHHHHHhhhhhhc
Q psy14360 371 DL-PPVST-RN--YVGHIQQIPLFFGTVIFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKY 446 (471)
Q Consensus 371 ~~-~~~~~-~~--~~~~~~~~~~~~g~~~faf~~~~~~~~i~~~M~~p~~f~~~~~vl~~~~~~~~~~y~~~g~~gY~~f 446 (471)
++ ..... ++ ...+....++++|++.|+|+||+++||||++||+|++|+| ++..++.+++.+|+.+++.||++|
T Consensus 210 ~g~~~~~~~~~~~~~~~~~~~f~a~g~iaFaf~gH~v~peIq~tMk~p~~f~~---~~lis~~~~~~~y~~vai~GY~aF 286 (437)
T KOG1303|consen 210 DGVGFCAPSGGYLDLGTIPTVFTALGIIAFAYGGHAVLPEIQHTMKSPPKFKK---ALLISYIIVTFLYFPVAIIGYWAF 286 (437)
T ss_pred cccccCCcccCcccCCCCcchhhhhhheeeeecCCeeeeehHhhcCCchhhhh---HHHHHHHHHHHHHHHHHHhhhhhh
Confidence 22 21111 11 1112222279999999999999999999999999999999 888999999999999999999999
Q ss_pred cCccccceeeccCCCCCCccccCCC
Q psy14360 447 GENVKGSITLNLSDRKDDPLGYLDN 471 (471)
Q Consensus 447 G~~~~~~i~~~~p~~~~~~~~~~~n 471 (471)
||+++++++.|++ .++|+...+|
T Consensus 287 G~~~~~~il~s~~--~p~~~~~~an 309 (437)
T KOG1303|consen 287 GDSVPDNILLSLQ--PPTWLIALAN 309 (437)
T ss_pred ccccchhhhhccc--CchhHHHHHH
Confidence 9999999999996 5566665554
No 10
>PTZ00206 amino acid transporter; Provisional
Probab=99.68 E-value=1.5e-17 Score=171.94 Aligned_cols=134 Identities=19% Similarity=0.242 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHhhcccCCcchhHHHHHHHHHHHHhhheEEEEec-cCCCCC-cc-------C---cccccccchhhhhhh
Q psy14360 326 HMAIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYIL-QDLPPV-ST-------R---NYVGHIQQIPLFFGT 393 (471)
Q Consensus 326 ~~~i~~~~~~pl~~~~~l~~ls~~S~~~~~~~~~~~~ii~~~~~-~~~~~~-~~-------~---~~~~~~~~~~~~~g~ 393 (471)
+..+++++++|++++|++++++++|.+|+++++...++++++.. ++.++. ++ . .......+.+.++|+
T Consensus 185 ~~~i~~~i~lPLs~~r~i~~L~~~S~i~~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi 264 (467)
T PTZ00206 185 TSLMWLCFMLPLVIPRHIDSLRYVSTIAVSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGV 264 (467)
T ss_pred eeehhhhHhhhcccccchHHHHHHHHHHHHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhH
Confidence 34445667899999999999999999999987765555544333 333221 00 0 011122457889999
Q ss_pred HhhhccccccchhhHHhhhcCC--CCCcccchhhhHHHHHHHHHHHHHhhhhhhccCccccceeecc-CCCC
Q psy14360 394 VIFAFEGIALVLPLQREMKKKK--NFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGSITLNL-SDRK 462 (471)
Q Consensus 394 ~~faf~~~~~~~~i~~~M~~p~--~f~~~~~vl~~~~~~~~~~y~~~g~~gY~~fG~~~~~~i~~~~-p~~~ 462 (471)
++|||+||.+.||+++|||||+ |+.+ ++..++.+++.+|..+|++||++||++++++|+.|+ |.++
T Consensus 265 ~~faF~~h~~~~~i~~~M~~~t~~~~~~---v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~ 333 (467)
T PTZ00206 265 FIFAYVFQITAYEVYMDMTNRSVGKFVL---ASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNE 333 (467)
T ss_pred HHhhhhhhhhhHHHHHhhcccchhHHHH---HHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCC
Confidence 9999999999999999999854 5655 888999999999999999999999999999999999 4443
No 11
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=99.67 E-value=9.1e-17 Score=164.34 Aligned_cols=143 Identities=27% Similarity=0.393 Sum_probs=115.9
Q ss_pred cchHHHHHHHHHHHHHHhhcccCCcchhHHHHHHHHHHHHhhheEEEEecc----CCCCCccCc--ccccccchhhhhhh
Q psy14360 320 DYKLHYHMAIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYILQ----DLPPVSTRN--YVGHIQQIPLFFGT 393 (471)
Q Consensus 320 ~~~~~~~~~i~~~~~~pl~~~~~l~~ls~~S~~~~~~~~~~~~ii~~~~~~----~~~~~~~~~--~~~~~~~~~~~~g~ 393 (471)
..++..|..+..++++|++++|+++.++++|.+|+.++.....+....... +..+.+..+ ...++.+++.++|+
T Consensus 121 ~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 200 (409)
T PF01490_consen 121 FISRYVWIIIFALIVLPLSFLKNLKSLRYLSILGLFSIFYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGI 200 (409)
T ss_pred cccccccccccccccccccccchhhHHHHHhhhhhhccceeeeeecceeeeeecccccccccccccccchhhHHHHhhhh
Confidence 356667888888889999999999999999999999988642222222221 111111111 23456789999999
Q ss_pred HhhhccccccchhhHHhhhcCCCCCcccchhhhHHHHHHHHHHHHHhhhhhhccCccccceeeccCCCC
Q psy14360 394 VIFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGSITLNLSDRK 462 (471)
Q Consensus 394 ~~faf~~~~~~~~i~~~M~~p~~f~~~~~vl~~~~~~~~~~y~~~g~~gY~~fG~~~~~~i~~~~p~~~ 462 (471)
++|||.||.++||+++|||+|++++|..++...++.+++.+|..+|..||++||++++++++.|+|+++
T Consensus 201 ~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~ 269 (409)
T PF01490_consen 201 IIFAFSCHPNLPPIQSEMKDPSKFKKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLPNDD 269 (409)
T ss_pred hhhhhhcccccceeeeeccCCccccccceeeeehhhhhhHHhhhhhhcccceeeeeecchhhhcCCCcc
Confidence 999999999999999999999998854448999999999999999999999999999999999999866
No 12
>PLN03074 auxin influx permease; Provisional
Probab=99.66 E-value=2e-17 Score=170.50 Aligned_cols=140 Identities=14% Similarity=0.081 Sum_probs=106.8
Q ss_pred ccchHHHHHHHHHHHHHHhhcccCCcchhHHHHHHHHHHHHhhheEEEEec-cCCCCCccCcccccccchhhhhhhHhhh
Q psy14360 319 IDYKLHYHMAIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYIL-QDLPPVSTRNYVGHIQQIPLFFGTVIFA 397 (471)
Q Consensus 319 ~~~~~~~~~~i~~~~~~pl~~~~~l~~ls~~S~~~~~~~~~~~~ii~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~fa 397 (471)
.++|++.|+.++.++..|++++|++|+++++|.+|..+++...+.+..... .+.++..+++.+.+...++.+.++++|+
T Consensus 166 ~~~~~~~~~~i~~~v~~~~~~i~sl~~l~~~S~ig~~~tl~~av~i~i~~i~~~~~~~~~~~~~~~~~~~f~~~~~i~fa 245 (473)
T PLN03074 166 DNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLLMTTYTAWYMTIAALSHGQVEGVKHSGPTKLVLYFTGATNILYT 245 (473)
T ss_pred CCcCCCeEEeehHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhHHHHHHHHHHHHHH
Confidence 466788899999999999999999999999999998875543222222221 1111111121223344556677789999
Q ss_pred ccccccchhhHHhhhcCCCCCcccchhhhHHHHHHHHHHHHHhhhhhhccCcccc-c-eeeccCCC
Q psy14360 398 FEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKG-S-ITLNLSDR 461 (471)
Q Consensus 398 f~~~~~~~~i~~~M~~p~~f~~~~~vl~~~~~~~~~~y~~~g~~gY~~fG~~~~~-~-i~~~~p~~ 461 (471)
|+||+++||||+|||||+||++ ++..++..++..|+.+|+.||++|||++++ + .+.|+|++
T Consensus 246 f~g~~v~~~I~~~M~~P~~F~~---~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~ 308 (473)
T PLN03074 246 FGGHAVTVEIMHAMWKPQKFKY---IYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRS 308 (473)
T ss_pred hcccccHHHHHHhccChhcccc---hHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCc
Confidence 9999999999999999999998 778899999999999999999999999875 3 45568854
No 13
>KOG4303|consensus
Probab=99.66 E-value=3.3e-18 Score=160.42 Aligned_cols=145 Identities=21% Similarity=0.328 Sum_probs=131.8
Q ss_pred cchHHHHHHHHHHHHHHhhcccCCcchhHHHHHHHHHHHHhhheEEEEeccCCCCC--ccCcccccccchhhhhhhHhhh
Q psy14360 320 DYKLHYHMAIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYILQDLPPV--STRNYVGHIQQIPLFFGTVIFA 397 (471)
Q Consensus 320 ~~~~~~~~~i~~~~~~pl~~~~~l~~ls~~S~~~~~~~~~~~~ii~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~fa 397 (471)
++|++-|+++.....+|++|+||+|..|.+|..+.++-++.-++++.|+.....++ +......+..++|..+|+++|+
T Consensus 235 svd~~sWm~i~~a~LLpc~FLk~Lk~VS~lSf~ct~sH~viN~i~v~YCLs~~~dW~wskv~Fsidi~~fPisvG~iVFs 314 (524)
T KOG4303|consen 235 SVDKASWMMITSASLLPCSFLKDLKIVSRLSFFCTISHLVINLIMVLYCLSFVSDWSWSKVTFSIDINTFPISVGMIVFS 314 (524)
T ss_pred CccccchhhhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccceeEEEEEEcccCceEEEEEEEe
Confidence 67899999999999999999999999999999999999988888888887665543 3344556788999999999999
Q ss_pred ccccccchhhHHhhhcCCCCCcccchhhhHHHHHHHHHHHHHhhhhhhccCccccceeeccCCCCCCccc
Q psy14360 398 FEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGSITLNLSDRKDDPLG 467 (471)
Q Consensus 398 f~~~~~~~~i~~~M~~p~~f~~~~~vl~~~~~~~~~~y~~~g~~gY~~fG~~~~~~i~~~~p~~~~~~~~ 467 (471)
|+.|..+|++|.+|++|++|+. +++++.+.+.++...+|.+||++|||++++.|+.|+|+++.+.+.
T Consensus 315 YTSqIFLP~LEGNM~~ps~Fn~---Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~qsfk~~V 381 (524)
T KOG4303|consen 315 YTSQIFLPNLEGNMKNPSQFNV---MLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLPNQSFKILV 381 (524)
T ss_pred eeceeeccccccccCChhHhee---eeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCCccchhhhh
Confidence 9999999999999999999998 899999999999999999999999999999999999987766543
No 14
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.62 E-value=2.1e-15 Score=153.30 Aligned_cols=260 Identities=15% Similarity=0.130 Sum_probs=182.2
Q ss_pred EeeeecccchhhHHhhHhhHHHHHHhhc-cC-cchHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHhheeeeee
Q psy14360 3 VIITQLGFCCVYFVFVAQSSHQICLALD-ID-YKLHYHMAIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYI 80 (471)
Q Consensus 3 i~~~~~G~~~~y~i~~~~~l~~~~~~~~-~~-~~~~~~~~i~~~~~~pl~~~~~l~~l~~~S~~~~~~~~~~~~~v~~~~ 80 (471)
+.+.++|.+.+|.+..||.+++.++... .+ .+++.+.++...++.++++.++...++..|.+....+.+.++...+..
T Consensus 94 ~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~~~v~~~~~l~~~~~ 173 (415)
T COG0814 94 YFFALYGLLVAYIVGIGNLLASFLGNQFGLNPLPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFGKVIYLVLLVVYLI 173 (415)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567899999999999999999999744 23 678888888888888999999999999999999888877666555544
Q ss_pred cccCCC-CCCCCc--cccccchhHHHHHHHHhhccceeeecchhhcccccC--CCcccchhhhHHHHHHHHHHHHhhhhh
Q psy14360 81 LQDLPP-VSTRNY--VGHIQQIPLFFGTVIFAFEGIALVLPLQREMKKKKN--FNSSFGVLNMGSILIIALMLSMGFFGY 155 (471)
Q Consensus 81 ~~~~~~-~~~~~~--~~~~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~--~~~~~~v~~~s~~~~~~~Y~~~g~~gY 155 (471)
....++ ....+. ...+..+..+++++.|||+||+++|++++|||++++ .+| +...+..+..++|..+++++|
T Consensus 174 ~~~~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k---~~~~~~~~~~vlyi~~~~~~~ 250 (415)
T COG0814 174 PHWNPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRK---AILIGSLIALVLYILVGFFVF 250 (415)
T ss_pred cccCHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 332111 011111 234556778899999999999999999999998854 777 899999999999999999999
Q ss_pred hcccCccccceeeecCCCCCChHHHHHHHHHHHHHHHhhccccchhHHHHHH--------------HHhh-hcCCCChhh
Q psy14360 156 LKYGENVKGSITLNLSDRKDDPLALVVVGSIGFGILCTYSLQFYVPVAIIWA--------------ELEE-KYGPFKHPA 220 (471)
Q Consensus 156 ~~fG~~~~~~il~nl~~~~~~~~~~v~~~~~~l~l~~s~pl~~~p~~~~~~~--------------~~~~-~~~~~~~~~ 220 (471)
..+|+++.++++++.|+ +......+.....+...++|.+.++...+.-+ .+.+ +.++.+...
T Consensus 251 ~~~~~~~~~~il~~~~~---~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~~~~~~~r~~~ 327 (415)
T COG0814 251 GCFGSLVFGNILAAKEQ---NISLLSALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKKSNSKPGRKKT 327 (415)
T ss_pred HhcCcccHHHHHHccCc---hHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHhccCcccchhh
Confidence 99999999999999987 33333344444444446666666665544222 1111 111111111
Q ss_pred HH--HHHHHHHHHHHHHHHHHhhcch----hhhhhhhhhhhHhhhhhHHHHhhh
Q psy14360 221 FG--ETILRVSLVLLTCKLALVVVGS----IGFGILCTYSLQFYVPVAIIWAEL 268 (471)
Q Consensus 221 ~~--~~~~r~~~~~~~~~iA~~ip~~----slvGs~~~~~l~fi~P~l~~l~~~ 268 (471)
+. ........+......+...|.. +-+|+.....+.++.|...+.|..
T Consensus 328 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~ 381 (415)
T COG0814 328 GLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLP 381 (415)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 22 2333344445555666666654 566777777777777776666654
No 15
>KOG1305|consensus
Probab=99.42 E-value=3.6e-14 Score=142.62 Aligned_cols=139 Identities=22% Similarity=0.308 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHhhcccCCcchhHHHHHHHHHHHHhhheEEEEeccCC---CCC-ccCcccccccchhhhhhhHhhhcccc
Q psy14360 326 HMAIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYILQDL---PPV-STRNYVGHIQQIPLFFGTVIFAFEGI 401 (471)
Q Consensus 326 ~~~i~~~~~~pl~~~~~l~~ls~~S~~~~~~~~~~~~ii~~~~~~~~---~~~-~~~~~~~~~~~~~~~~g~~~faf~~~ 401 (471)
|.+....++.|++..|+++++.+.|.++..++...+.++.+...... ++. ...+....++++..++++++|||.||
T Consensus 131 ill~~~~~i~pLsl~k~l~~Lk~tS~~s~~~~~~fv~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch 210 (411)
T KOG1305|consen 131 ILLVLLFIILPLSLLKNLDSLKYTSALSLASVVYFVVLVVYKYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCH 210 (411)
T ss_pred eehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcccccCCcchhhhhhhhhhhhheeeecc
Confidence 67788888999999999999999999999998866655555544422 111 11212222367899999999999999
Q ss_pred ccchhhHHhhhcCCCCCcccchhhhHHHHHHHHHHHHHhhhhhhccCccccceeeccCCCCCCc
Q psy14360 402 ALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGSITLNLSDRKDDP 465 (471)
Q Consensus 402 ~~~~~i~~~M~~p~~f~~~~~vl~~~~~~~~~~y~~~g~~gY~~fG~~~~~~i~~~~p~~~~~~ 465 (471)
.+..|+++|||||++.+..+ +.+.+...++++|..+|++||+.|||+++++++.++|+.....
T Consensus 211 ~n~~~i~~El~~~s~~~i~~-v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~ 273 (411)
T KOG1305|consen 211 SNVFPIYNELKDRSVKKIQR-VSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNL 273 (411)
T ss_pred ccceeeeeeeeCchHHHHHH-HHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchh
Confidence 99999999999998744422 7888999999999999999999999999999999999866553
No 16
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.01 E-value=1.4e-10 Score=118.06 Aligned_cols=157 Identities=16% Similarity=0.182 Sum_probs=123.3
Q ss_pred CcccccccccccccceeEEEEEEeeecccccchHHHHHHHHHHHHHHhhcccCCcchhHHHHHHHHHHHHhhheEEEEec
Q psy14360 290 GTGKNQQTIPDEIWSVVTITAVQICLALDIDYKLHYHMAIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYIL 369 (471)
Q Consensus 290 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~ls~~S~~~~~~~~~~~~ii~~~~~ 369 (471)
..+++++++.++.++. .+.+++.+.+++..++.++++.++...++..|.++...+...++...+...
T Consensus 108 ~~g~~l~~~~~~~~~~-------------~~~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~~~v~~~~~l~~~~~~ 174 (415)
T COG0814 108 GIGNLLASFLGNQFGL-------------NPLPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFGKVIYLVLLVVYLIP 174 (415)
T ss_pred cchhHHHHHHHhhccc-------------CCcchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3466666666664441 126788888999999999999999999999999999887765555554443
Q ss_pred cCCCC-CccCc-c-cccccchhhhhhhHhhhccccccchhhHHhhhcCCC--CCcccchhhhHHHHHHHHHHHHHhhhhh
Q psy14360 370 QDLPP-VSTRN-Y-VGHIQQIPLFFGTVIFAFEGIALVLPLQREMKKKKN--FNSSFGVLNMGSILIIALMLSMGFFGYL 444 (471)
Q Consensus 370 ~~~~~-~~~~~-~-~~~~~~~~~~~g~~~faf~~~~~~~~i~~~M~~p~~--f~~~~~vl~~~~~~~~~~y~~~g~~gY~ 444 (471)
...++ ....+ . ...+.++..++++.+|+|++|+++|+++++|||+++ .+| +...+..+..++|+..+..+|.
T Consensus 175 ~~~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k---~~~~~~~~~~vlyi~~~~~~~~ 251 (415)
T COG0814 175 HWNPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRK---AILIGSLIALVLYILVGFFVFG 251 (415)
T ss_pred ccCHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 32111 11111 1 356778889999999999999999999999998765 666 8889999999999999999999
Q ss_pred hccCccccceeeccCCCC
Q psy14360 445 KYGENVKGSITLNLSDRK 462 (471)
Q Consensus 445 ~fG~~~~~~i~~~~p~~~ 462 (471)
.+|++++++++.+.|+++
T Consensus 252 ~~~~~~~~~il~~~~~~~ 269 (415)
T COG0814 252 CFGSLVFGNILAAKEQNI 269 (415)
T ss_pred hcCcccHHHHHHccCchH
Confidence 999999999999997654
No 17
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.00 E-value=1.4e-09 Score=110.19 Aligned_cols=251 Identities=10% Similarity=-0.004 Sum_probs=160.7
Q ss_pred eecccchhhHHhhHhhHHHHHHhhc-cCcchHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHhheeeeeecccC
Q psy14360 6 TQLGFCCVYFVFVAQSSHQICLALD-IDYKLHYHMAIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYILQDL 84 (471)
Q Consensus 6 ~~~G~~~~y~i~~~~~l~~~~~~~~-~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~S~~~~~~~~~~~~~v~~~~~~~~ 84 (471)
..++.+.+|.+..++.+.+.++... .+.+.+....+...++.++ ..+..|..++++.+.+...+..++........+.
T Consensus 84 ~~~~~~~ay~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~l-~~~G~~~~~~v~~i~~~~~l~~l~~~ii~~~~~~ 162 (381)
T TIGR00837 84 VLYILTYAYISGGGSILSRLIGEYFGFPWSARAIVLIFTVLFGSF-VWLSTSAVDRITRVLIFGKIIAFALVFSGLLPHV 162 (381)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH-HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4566788899999999999887532 3345444443333344443 4456677777777666655544333222222111
Q ss_pred C--CCCCCCc-cccccchhHHHHHHHHhhccceeeecchhhcc-cccCCCcccchhhhHHHHHHHHHHHHhhhhhhcccC
Q psy14360 85 P--PVSTRNY-VGHIQQIPLFFGTVIFAFEGIALVLPLQREMK-KKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGE 160 (471)
Q Consensus 85 ~--~~~~~~~-~~~~~~~~~~~g~~~faf~~~~~~~~i~~~m~-~p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~ 160 (471)
+ +..+... ...+.++...++...++|.+|.+++++.+|++ |+||.+| +...+..++.++|..+........+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~~k~i~r---aii~g~~i~~~lY~l~~~~~~g~~~~ 239 (381)
T TIGR00837 163 KGDLLLDVALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGNVKKVKK---SILIGSAIALVLYILWQLATMGNLPR 239 (381)
T ss_pred cHHHHhcCccccccHHHHHHHHHHHHHHHHcccccHHHHHHhccCHHHHHH---HHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 1 0000000 11344566778889999999988999999997 5567777 89999999999999886655544432
Q ss_pred ccc----------cc---eeee-cCCCCCChHHHHHHHHHHHHHHHhhccccchhHHHHHHHHhhhcCCCChhhHHHHHH
Q psy14360 161 NVK----------GS---ITLN-LSDRKDDPLALVVVGSIGFGILCTYSLQFYVPVAIIWAELEEKYGPFKHPAFGETIL 226 (471)
Q Consensus 161 ~~~----------~~---il~n-l~~~~~~~~~~v~~~~~~l~l~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (471)
+.- ++ ...+ .+ +.+...+...+-.+++..|+.-.....+|...+.+.++.+ +++ |...
T Consensus 240 ~~l~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~~-~~~----~~~~ 311 (381)
T TIGR00837 240 SEFLPIIAKGGNLDGLVNALQGVLK---SSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFDDS-KKG----RFKT 311 (381)
T ss_pred HHHHHHHHcCCChHHHHHHHHHhcc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc-cCC----Cchh
Confidence 211 11 1111 12 2345667778888888888887777777776665554322 111 2334
Q ss_pred HHHHHHHHHHHHHhhcch-----hhhhhhhhhhhHhhhhhHHHHhhhc
Q psy14360 227 RVSLVLLTCKLALVVVGS-----IGFGILCTYSLQFYVPVAIIWAELE 269 (471)
Q Consensus 227 r~~~~~~~~~iA~~ip~~-----slvGs~~~~~l~fi~P~l~~l~~~~ 269 (471)
.....+...++|...|+. +..| +.++.+.+++|+++.+|.|+
T Consensus 312 ~~~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~ 358 (381)
T TIGR00837 312 GLLTFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKARK 358 (381)
T ss_pred hhhhHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 556667788899999984 8888 88999999999999999773
No 18
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=98.52 E-value=9.7e-07 Score=89.50 Aligned_cols=252 Identities=13% Similarity=0.088 Sum_probs=150.6
Q ss_pred eeecccchhhHHhhHhhHHHHHHhhc-cCcchHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHhheeeeeeccc
Q psy14360 5 ITQLGFCCVYFVFVAQSSHQICLALD-IDYKLHYHMAIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYILQD 83 (471)
Q Consensus 5 ~~~~G~~~~y~i~~~~~l~~~~~~~~-~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~S~~~~~~~~~~~~~v~~~~~~~ 83 (471)
+..++.+++|..-.|+.+++.++... .+.+.+.-..++..+...+... ..|...+.+.+-+...+..++......+.+
T Consensus 89 ~~~y~ll~AYisg~g~~~~~~l~~~~~~~~~~~~~~~~f~~i~~~iv~~-g~~~v~~~n~~lv~~~i~~~~~l~~~~~p~ 167 (394)
T PF03222_consen 89 FLLYALLVAYISGGGSILSSLLGNQLGTDLSPWLSSLLFTIIFGGIVYF-GTKAVDRINRVLVFGMIISFIILVVYLIPH 167 (394)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34566788999999999999998765 3444444333333332222222 222333333322222222222222221111
Q ss_pred C--CCCCC-CCccccccchhHHHHHHHHhhccceeeecchhhcc-cccCCCcccchhhhHHHHHHHHHHHH--hhhhhh-
Q psy14360 84 L--PPVST-RNYVGHIQQIPLFFGTVIFAFEGIALVLPLQREMK-KKKNFNSSFGVLNMGSILIIALMLSM--GFFGYL- 156 (471)
Q Consensus 84 ~--~~~~~-~~~~~~~~~~~~~~g~~~faf~~~~~~~~i~~~m~-~p~~~~~~~~v~~~s~~~~~~~Y~~~--g~~gY~- 156 (471)
. +...+ .+...++......+++..+||..|..+|++.+.++ |++|.+| ++..+..+..++|+.. .+.|-+
T Consensus 168 ~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~---ai~~Gs~i~lv~yl~w~~~~lg~l~ 244 (394)
T PF03222_consen 168 WNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRK---AIIIGSLIPLVMYLLWVFSILGSLP 244 (394)
T ss_pred cCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 1 11111 11234566677889999999999999999999998 5567777 8888888888888765 333311
Q ss_pred --------cccCcccc--ceeeecCCCCCChHHHHHHHHHHHHHHHhhccccchhHHHHHHHHhhhcCCCChhhHHHHHH
Q psy14360 157 --------KYGENVKG--SITLNLSDRKDDPLALVVVGSIGFGILCTYSLQFYVPVAIIWAELEEKYGPFKHPAFGETIL 226 (471)
Q Consensus 157 --------~fG~~~~~--~il~nl~~~~~~~~~~v~~~~~~l~l~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (471)
.-+++..+ ..+.+..+ +.....+..+.-.+++..||-=...-.+|.+...++. +++. ..|...
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~--~~~~---~~r~~~ 317 (394)
T PF03222_consen 245 REQFAEAIAQGGNVSALVSALANVSG--SPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKL--KNNS---SGRLKT 317 (394)
T ss_pred HHHHHHHHhcCCChHHHHHHHHhhcC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--Cccc---cchHHH
Confidence 11111111 12223322 3456667788888888888765555666776665543 1111 122333
Q ss_pred HHHHHHHHHHHHHhhcch-----hhhhhhhhhhhHhhhhhHHHHhhh
Q psy14360 227 RVSLVLLTCKLALVVVGS-----IGFGILCTYSLQFYVPVAIIWAEL 268 (471)
Q Consensus 227 r~~~~~~~~~iA~~ip~~-----slvGs~~~~~l~fi~P~l~~l~~~ 268 (471)
.........++|...|+. ++.| ...+.+..++|+++.+|.+
T Consensus 318 ~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r 363 (394)
T PF03222_consen 318 WLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLGILPALMVWKAR 363 (394)
T ss_pred HHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHH
Confidence 444556678889999994 8999 9999999999999999988
No 19
>PRK10483 tryptophan permease; Provisional
Probab=98.16 E-value=9.4e-06 Score=81.97 Aligned_cols=254 Identities=13% Similarity=0.048 Sum_probs=148.2
Q ss_pred eeecccchhhHHhhHhhHHHHHHhhccCcchHHHHHHHHHHHHHHHhh--ccccchhhHHHHHHHHHHHHhheeeeeecc
Q psy14360 5 ITQLGFCCVYFVFVAQSSHQICLALDIDYKLHYHMAIMLAPILFTAMI--RNLKYIAPISAVANLIMGLGIAAIYYYILQ 82 (471)
Q Consensus 5 ~~~~G~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~--~~l~~l~~~S~~~~~~~~~~~~~v~~~~~~ 82 (471)
+..++-+.+|+-=.||.+++.++....+.+++.-.+++.++.-...+. |..+++...=..+.+..+...+....-.++
T Consensus 97 fl~Y~Ll~AYisg~g~il~~~l~~~~~~i~~~~~~llF~~~~~~iv~~gt~~vd~~n~~l~~~~i~~f~~~~~~l~~~i~ 176 (414)
T PRK10483 97 FVLYILTYAYISASGSILHHTFAEMSLNVPARAAGFGFALLVAFVVWLSTKAVSRMTAIVLGAKVITFFLTFGSLLGHVQ 176 (414)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 345677889999999999999976432345444334444444444443 333333333333333333222211111111
Q ss_pred c--CCCCCCCCccccccchhHHHHHHHHhhccceeeecchhhccc-ccCCCcccchhhhHHHHHHHHHHHHhhhhhhc--
Q psy14360 83 D--LPPVSTRNYVGHIQQIPLFFGTVIFAFEGIALVLPLQREMKK-KKNFNSSFGVLNMGSILIIALMLSMGFFGYLK-- 157 (471)
Q Consensus 83 ~--~~~~~~~~~~~~~~~~~~~~g~~~faf~~~~~~~~i~~~m~~-p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~-- 157 (471)
. .-+.+ ......+.......+++.+||+.|.++|++.+.+++ ++|.+| ++..+..+-.++|+..=...-..
T Consensus 177 ~~~L~~~~-~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~---~I~iGs~Iplv~yl~W~~~~lg~l~ 252 (414)
T PRK10483 177 PATLFNVA-ESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVK---CLVYGTLMALALYTIWLLATMGNIP 252 (414)
T ss_pred HHHHhccc-cccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 0 00100 011112334667889999999999999999999875 467777 88899999888888743222221
Q ss_pred ---------ccCccccceeeecCCC-CCChHHHHHHHHHHHHHHHhhccccchhHHHHHHHHhhhcCCCChhhHHHHHHH
Q psy14360 158 ---------YGENVKGSITLNLSDR-KDDPLALVVVGSIGFGILCTYSLQFYVPVAIIWAELEEKYGPFKHPAFGETILR 227 (471)
Q Consensus 158 ---------fG~~~~~~il~nl~~~-~~~~~~~v~~~~~~l~l~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~r 227 (471)
-|+++ +..+..+.+. ++.....+..+.-.+++..||-=...-..|.+...++.+.+ . ..|....
T Consensus 253 ~~~~~~~~~~~~ni-~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~~~~--~---~~r~~~~ 326 (414)
T PRK10483 253 RPEFIGIAEKGGNI-DVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFDDS--A---MGRFKTA 326 (414)
T ss_pred HHHHHHHHHcCCCh-HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc--c---ccceeee
Confidence 12222 1111122111 12455567777777788777654444556666655543221 1 1222234
Q ss_pred HHHHHHHHHHHHhhcch-----hhhhhhhhhhhHhhhhhHHHHhhhc
Q psy14360 228 VSLVLLTCKLALVVVGS-----IGFGILCTYSLQFYVPVAIIWAELE 269 (471)
Q Consensus 228 ~~~~~~~~~iA~~ip~~-----slvGs~~~~~l~fi~P~l~~l~~~~ 269 (471)
....+...++|...|+. +..|.. .+.+.-++|+++-+|.|+
T Consensus 327 ~ltflPPl~~al~~P~~Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk 372 (414)
T PRK10483 327 LLTFLPPVVGGLLFPNGFLYAIGYAGLA-ATIWAAIVPALLARASRK 372 (414)
T ss_pred hhhHhhHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 45667888999999993 888865 777778999999999873
No 20
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=98.07 E-value=2.8e-05 Score=78.80 Aligned_cols=248 Identities=9% Similarity=0.036 Sum_probs=144.7
Q ss_pred eecccchhhHHhhHhhHHHHHHhhc-cCcchHHHHHHHHHHHHHHHhh--ccccchhhHHHHHHHHHHHHhheeeeeecc
Q psy14360 6 TQLGFCCVYFVFVAQSSHQICLALD-IDYKLHYHMAIMLAPILFTAMI--RNLKYIAPISAVANLIMGLGIAAIYYYILQ 82 (471)
Q Consensus 6 ~~~G~~~~y~i~~~~~l~~~~~~~~-~~~~~~~~~~i~~~~~~pl~~~--~~l~~l~~~S~~~~~~~~~~~~~v~~~~~~ 82 (471)
..++.+.+|..-.||.+++.++++. .+.+.+...+.+.++.....+. |-..+....=..+.+..+.... .+..
T Consensus 90 l~y~ll~AYisg~g~il~~~l~~~~~~~i~~~~~~l~F~~~~~~iv~~g~~~v~~~n~~L~~~~ii~~~~~~---~~l~- 165 (403)
T PRK15132 90 LMYALTAAYISGAGELLASSISDWTGISMSPTAGVLLFTLVAGGVVCVGTSSVDLFNRFLFSAKIIFLVVML---ALMM- 165 (403)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH---HHHH-
Confidence 3566788999999999999887643 2334443333333322222222 2222222222222222221111 1111
Q ss_pred cCCCCCCCCcc---ccccchhHHHHHHHHhhccceeeecchhhcccc-cCCCcccchhhhHHHHHHHHHHHHhhhhhhcc
Q psy14360 83 DLPPVSTRNYV---GHIQQIPLFFGTVIFAFEGIALVLPLQREMKKK-KNFNSSFGVLNMGSILIIALMLSMGFFGYLKY 158 (471)
Q Consensus 83 ~~~~~~~~~~~---~~~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p-~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~f 158 (471)
|+++..... .+.+.....++++.+||+.|..+|++.+.+++. +|.+| +...+..+-.++|+..=......-
T Consensus 166 --p~~~~~~L~~~~~~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k---~i~~Gs~i~li~yl~W~~~~lg~l 240 (403)
T PRK15132 166 --PHIHKVNLLTLPLQQGLALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRW---VFIIGSAIPLVAYIFWQLATLGSI 240 (403)
T ss_pred --HhcCHHHHhcCCccccHHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHH---HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 111110000 011236778899999999999999999998754 66777 888888888888886644444333
Q ss_pred cCc-----ccc-----ceeeecCCC-CCChHHHHHHHHHHHHHHHhhccccchhHHHHHHHHhhhcCCCChhhHHHHHHH
Q psy14360 159 GEN-----VKG-----SITLNLSDR-KDDPLALVVVGSIGFGILCTYSLQFYVPVAIIWAELEEKYGPFKHPAFGETILR 227 (471)
Q Consensus 159 G~~-----~~~-----~il~nl~~~-~~~~~~~v~~~~~~l~l~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~r 227 (471)
+.+ .++ +++..+.+. .+.+...++...-.+++..||-=...-..|.+...+.++.++ ..|....
T Consensus 241 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~~~~-----~~r~~~~ 315 (403)
T PRK15132 241 DSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRRNTV-----GGRLQTG 315 (403)
T ss_pred CHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccc-----cCCchhe
Confidence 322 111 222222211 134566677777777777776554555566666555432221 1234455
Q ss_pred HHHHHHHHHHHHhhcch-----hhhhhhhhhhhHhhhhhHHHHhhh
Q psy14360 228 VSLVLLTCKLALVVVGS-----IGFGILCTYSLQFYVPVAIIWAEL 268 (471)
Q Consensus 228 ~~~~~~~~~iA~~ip~~-----slvGs~~~~~l~fi~P~l~~l~~~ 268 (471)
....+...++|...|+. +..|. ..+.+.+++|+++-+|.+
T Consensus 316 ~l~flppli~a~~~P~~F~~al~~aG~-~~ail~~ilP~~m~~~~r 360 (403)
T PRK15132 316 LITFLPPLAFALFYPRGFVMALGYAGV-ALAVLALLLPSLLVWQSR 360 (403)
T ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 67778889999999995 77775 578899999999999987
No 21
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=98.03 E-value=0.00012 Score=74.18 Aligned_cols=258 Identities=14% Similarity=0.104 Sum_probs=148.1
Q ss_pred cccchhhHHhhHhhHHHHHHhhc-cCcchHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHhheeeeeecccC--
Q psy14360 8 LGFCCVYFVFVAQSSHQICLALD-IDYKLHYHMAIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYILQDL-- 84 (471)
Q Consensus 8 ~G~~~~y~i~~~~~l~~~~~~~~-~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~S~~~~~~~~~~~~~v~~~~~~~~-- 84 (471)
+..+.+|..-.++.+.+.+.... .+-+.+....+..+..+-.......+.+.+.+.+-+...+...+....+...+.
T Consensus 93 ~~i~~aY~~~~~~~~~~fl~~~~~~~~p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~l~~l~~~lip~~~~ 172 (397)
T TIGR00814 93 YPILLIYSVAITNDSASFLVNQLGTAPPLRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVLILVLLSLYLIPHWNG 172 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH
Confidence 33456777777777777766532 223334333333333323344446666666666554333333333332222211
Q ss_pred CCCCCCCcc-ccccchhHHHHHHHHhhccceeeecchh----hcccc----cCCCcccchhhhHHHHHHHHHHHHhhhhh
Q psy14360 85 PPVSTRNYV-GHIQQIPLFFGTVIFAFEGIALVLPLQR----EMKKK----KNFNSSFGVLNMGSILIIALMLSMGFFGY 155 (471)
Q Consensus 85 ~~~~~~~~~-~~~~~~~~~~g~~~faf~~~~~~~~i~~----~m~~p----~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY 155 (471)
....+.+.. ..+.+...+.+...+||.+|..+++... |.+|| +|.+| ++..+..+..++|+..-+..-
T Consensus 173 ~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k---~i~~~~~i~~~~y~~~~~s~~ 249 (397)
T TIGR00814 173 ANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLR---IMKGASLILVATVMFFVFSCV 249 (397)
T ss_pred HHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHH---HHHHHHHHHHHHHHHHHHHHh
Confidence 111111111 1234577888999999999999999973 33322 34455 888888888888877766655
Q ss_pred hcccCcc-----ccc--eeeecCCC-CCChHHHHHHHHHHHHHHHhhccccchhHHHHHHHHhh---hcCCCChhhHHHH
Q psy14360 156 LKYGENV-----KGS--ITLNLSDR-KDDPLALVVVGSIGFGILCTYSLQFYVPVAIIWAELEE---KYGPFKHPAFGET 224 (471)
Q Consensus 156 ~~fG~~~-----~~~--il~nl~~~-~~~~~~~v~~~~~~l~l~~s~pl~~~p~~~~~~~~~~~---~~~~~~~~~~~~~ 224 (471)
...+++. ++| .+..+.+. .+.....+....-.+++..|+-=+..-.+|.+...+.+ ..+++.+++..+.
T Consensus 250 ~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~~~~~~~~~~~~~ 329 (397)
T TIGR00814 250 LSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSLKMKGKKINIRKLNR 329 (397)
T ss_pred ccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccccCHHHHHH
Confidence 5555322 122 12211111 12455566666667777777776667777877776632 1122222234455
Q ss_pred HHHHHHHHHHHHHHHhhcch-hhhhhhhh---hhhHhhhhhHHHHhhh
Q psy14360 225 ILRVSLVLLTCKLALVVVGS-IGFGILCT---YSLQFYVPVAIIWAEL 268 (471)
Q Consensus 225 ~~r~~~~~~~~~iA~~ip~~-slvGs~~~---~~l~fi~P~l~~l~~~ 268 (471)
....+..+.++.+|..=|++ +++.++++ ..+.|++|...-.|.-
T Consensus 330 ~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v~ 377 (397)
T TIGR00814 330 AIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKVP 377 (397)
T ss_pred HHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHccH
Confidence 66677788999999999998 77666666 5566888987777764
No 22
>PRK09664 tryptophan permease TnaB; Provisional
Probab=97.81 E-value=0.00015 Score=73.31 Aligned_cols=250 Identities=9% Similarity=0.011 Sum_probs=140.6
Q ss_pred eecccchhhHHhhHhhHHHHHHhh-ccCcchHHHHHHHHHHHHHHHhhc--cccchhhHHHHHHHHHHHHhheeeeeecc
Q psy14360 6 TQLGFCCVYFVFVAQSSHQICLAL-DIDYKLHYHMAIMLAPILFTAMIR--NLKYIAPISAVANLIMGLGIAAIYYYILQ 82 (471)
Q Consensus 6 ~~~G~~~~y~i~~~~~l~~~~~~~-~~~~~~~~~~~i~~~~~~pl~~~~--~l~~l~~~S~~~~~~~~~~~~~v~~~~~~ 82 (471)
..++-+.+|+-=.||.+++.++.. ..+.+.+.-.++++.+.-+..+.. ..+++...=..+.+..+...+....-.++
T Consensus 96 l~Y~Ll~AYisggG~il~~~l~~~~~~~i~~~~~~llF~~~~~~~v~~gt~~vd~~nr~l~~~~ii~f~~~~~~l~~~i~ 175 (415)
T PRK09664 96 VLYILTYAYISANGAIISETISMNLGYHANPRIVGICTAIFVASVLWISSLAASRITSLFLGLKIISFVIVFGSFFFQVD 175 (415)
T ss_pred HHHHHHHHHHhccHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 456678899999999999998752 223444443344444444444433 33333333333322222221211111111
Q ss_pred cCCCCCCCCccc----cccchhHHHHHHHHhhccceeeecchhhcccc-cCCCcccchhhhHHHHHHHHHHHH--hhhhh
Q psy14360 83 DLPPVSTRNYVG----HIQQIPLFFGTVIFAFEGIALVLPLQREMKKK-KNFNSSFGVLNMGSILIIALMLSM--GFFGY 155 (471)
Q Consensus 83 ~~~~~~~~~~~~----~~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p-~~~~~~~~v~~~s~~~~~~~Y~~~--g~~gY 155 (471)
. ....+.+... ........++++.+||+.|+++|++.+.+++. +|.+| +......+-.++|..- .+.|-
T Consensus 176 ~-~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~k---aIl~Gs~IpLviY~~W~~~ilG~ 251 (415)
T PRK09664 176 Y-SILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIK---SVVFGSLLALVIYLFWLYCTMGN 251 (415)
T ss_pred H-HHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHH---HHHHHHHHHHHHHHHHHHHHhcC
Confidence 0 0001111111 02235668899999999999999999988744 56666 6666666666677433 23331
Q ss_pred ---------hcccCcccccee---eecCCCCCChHHHHHHHHHHHHHHHhhccccchhHHHHHHHHhhhcCCCChhhHHH
Q psy14360 156 ---------LKYGENVKGSIT---LNLSDRKDDPLALVVVGSIGFGILCTYSLQFYVPVAIIWAELEEKYGPFKHPAFGE 223 (471)
Q Consensus 156 ---------~~fG~~~~~~il---~nl~~~~~~~~~~v~~~~~~l~l~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~ 223 (471)
.+.|+++.+.+. .+.+ +.+...+..+.-.+++..||-=...-..|.+...++.+.+ . ..|
T Consensus 252 lp~~~~~~~~~~g~nv~~l~~s~~~~~~---~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~~~~--~---~~r 323 (415)
T PRK09664 252 IPRESFKAIISSGGNVDSLVKSFLGTKQ---HGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKIDNS--H---GGR 323 (415)
T ss_pred CCHHHHHHHHHcCCCchHHHHHHHhhcc---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc--c---ccc
Confidence 122222222111 1212 3466667777777778777654444555665554433221 1 122
Q ss_pred HHHHHHHHHHHHHHHHhhcc-h----hhhhhhhhhhhHhhhhhHHHHhhh
Q psy14360 224 TILRVSLVLLTCKLALVVVG-S----IGFGILCTYSLQFYVPVAIIWAEL 268 (471)
Q Consensus 224 ~~~r~~~~~~~~~iA~~ip~-~----slvGs~~~~~l~fi~P~l~~l~~~ 268 (471)
........+...++|...|+ | +.-|.. .+.+.-++|+++-+|.|
T Consensus 324 ~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~-~~il~~ilP~lM~~~~R 372 (415)
T PRK09664 324 FKTVLLTFLPPALLYLIFPNGFIYGIGGAGLC-ATIWAVIIPAVLAIKAR 372 (415)
T ss_pred eeeehhhHhhhHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 33344566778899999999 4 887875 66888899999999987
No 23
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=97.45 E-value=0.0021 Score=65.32 Aligned_cols=167 Identities=12% Similarity=0.061 Sum_probs=107.3
Q ss_pred hhHHHHHHHHhhccceeeecchhhccc-----------ccCCCcccchhhhHHHHHHHHHHHHhhhhhhcccCcc-----
Q psy14360 99 IPLFFGTVIFAFEGIALVLPLQREMKK-----------KKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENV----- 162 (471)
Q Consensus 99 ~~~~~g~~~faf~~~~~~~~i~~~m~~-----------p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~~----- 162 (471)
....++++.+||+-|+.+|+....+|+ ++|-++ ++..+..+..++|+..-+..-..-+++.
T Consensus 211 l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~r---ii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~ 287 (443)
T PRK13629 211 VWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQ---IISRASMLMVAVVMFFAFSCLFTLSPQNMAEAK 287 (443)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 556789999999999999999887432 234444 8888888888888877665555444321
Q ss_pred ccce--eee----cCCCC-C-----ChHHHHHHHHHHHHHHHhhccccchhHHHHHHHHhh---hc-CCCChhhHHHHHH
Q psy14360 163 KGSI--TLN----LSDRK-D-----DPLALVVVGSIGFGILCTYSLQFYVPVAIIWAELEE---KY-GPFKHPAFGETIL 226 (471)
Q Consensus 163 ~~~i--l~n----l~~~~-~-----~~~~~v~~~~~~l~l~~s~pl~~~p~~~~~~~~~~~---~~-~~~~~~~~~~~~~ 226 (471)
++|+ +.. +++.. . ........+.-.+++..||-=...-.+|.+...+.+ +. +++-.++..+...
T Consensus 288 ~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E~l~gl~~~~~~~~~~~~~~~~~~~~~~ 367 (443)
T PRK13629 288 AQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLILKFGYKGDKTKVSLGKLNTIS 367 (443)
T ss_pred HhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCHHHHHHHH
Confidence 1222 211 22200 1 234555666666677777665555677777776632 11 2222223455666
Q ss_pred HHHHHHHHHHHHHhhcch-hhhhhhhh---hhhHhhhhhHHHHhhh
Q psy14360 227 RVSLVLLTCKLALVVVGS-IGFGILCT---YSLQFYVPVAIIWAEL 268 (471)
Q Consensus 227 r~~~~~~~~~iA~~ip~~-slvGs~~~---~~l~fi~P~l~~l~~~ 268 (471)
..+..+.++.+|+.=|++ +++.++++ ..+.|++|...-+|.-
T Consensus 368 ~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~kvp 413 (443)
T PRK13629 368 MIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAP 413 (443)
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHccH
Confidence 778888999999999998 77666665 5566888987777764
No 24
>TIGR00909 2A0306 amino acid transporter.
Probab=97.10 E-value=0.008 Score=61.92 Aligned_cols=154 Identities=11% Similarity=0.070 Sum_probs=86.2
Q ss_pred HHHHhhccccchhhHHHHHHHHHHHHhheeeeeecc--cCCCCCCCCccccccchhHHHHHHHHhhccceeeecchhhcc
Q psy14360 47 LFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYILQ--DLPPVSTRNYVGHIQQIPLFFGTVIFAFEGIALVLPLQREMK 124 (471)
Q Consensus 47 ~pl~~~~~l~~l~~~S~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~faf~~~~~~~~i~~~m~ 124 (471)
.-....+..|..++++.+.....+..++........ +.++.++.. .....++..++....|+|.|........+|+|
T Consensus 144 ~~~l~~~g~~~~~~~~~v~~~~~i~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~ 222 (429)
T TIGR00909 144 LTYILYLGAKESGKVNDILVVLKVAALLLFAALGAIHFASNNYTPFM-PMGFGGVGAATALVFFAFIGFEAISTAAEEVK 222 (429)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhhHHHhhCcHHhcCCCC-CCcHHHHHHHHHHHHHHHhhHHHHHhhHHhcc
Confidence 333445566777777766655444333222211111 111111110 11234566677789999999999999999999
Q ss_pred ccc-CCCcccchhhhHHHHHHHHHHHHhhhhhhcccCc-c-cc--c---eeeecCCCCCChHHHHHHHHHHHHHHHhhcc
Q psy14360 125 KKK-NFNSSFGVLNMGSILIIALMLSMGFFGYLKYGEN-V-KG--S---ITLNLSDRKDDPLALVVVGSIGFGILCTYSL 196 (471)
Q Consensus 125 ~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~-~-~~--~---il~nl~~~~~~~~~~v~~~~~~l~l~~s~pl 196 (471)
||+ +.+| ++..+..++.++|..........-..+ . ++ + +..+.. .++...+..+...++.+.+.--
T Consensus 223 ~p~r~ip~---ai~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~ 296 (429)
T TIGR00909 223 NPERDIPK---AIILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLG---QGIGGLILTAGAVFSIASVMLA 296 (429)
T ss_pred CccccccH---HHHHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhC---chHHHHHHHHHHHHHHHHHHHH
Confidence 995 5788 899999999999998865544322211 1 11 0 011111 2344455666666666666544
Q ss_pred ccchhHHHHHH
Q psy14360 197 QFYVPVAIIWA 207 (471)
Q Consensus 197 ~~~p~~~~~~~ 207 (471)
......+.++.
T Consensus 297 ~~~~~sR~~~~ 307 (429)
T TIGR00909 297 GIYGTSRVLFA 307 (429)
T ss_pred HHHHHHHHHHH
Confidence 44444455443
No 25
>PRK11021 putative transporter; Provisional
Probab=97.04 E-value=0.017 Score=59.16 Aligned_cols=55 Identities=20% Similarity=0.313 Sum_probs=47.6
Q ss_pred ccchhHHHHHHHHhhccceeeecchhhccccc-CCCcccchhhhHHHHHHHHHHHHhhh
Q psy14360 96 IQQIPLFFGTVIFAFEGIALVLPLQREMKKKK-NFNSSFGVLNMGSILIIALMLSMGFF 153 (471)
Q Consensus 96 ~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~~ 153 (471)
+.++...+....|+|.|-......-+|+|||+ +.+| .+..+...+.++|......
T Consensus 176 ~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPr---Ai~~~~~~~~~lYil~~~~ 231 (410)
T PRK11021 176 WSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPR---ALMIGLLLAGLVYWACTVV 231 (410)
T ss_pred HHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccH---HHHHHHHHHHHHHHHHHHH
Confidence 45566778889999999999999999999995 5888 8999999999999988654
No 26
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=96.54 E-value=0.15 Score=52.92 Aligned_cols=166 Identities=14% Similarity=0.068 Sum_probs=90.2
Q ss_pred cchhHHHHHHHHhhccceeeecchhhcccccC-CCcccchhhhHHHHHHHHHHHHhhhhhhcccCc-cc----c---cee
Q psy14360 97 QQIPLFFGTVIFAFEGIALVLPLQREMKKKKN-FNSSFGVLNMGSILIIALMLSMGFFGYLKYGEN-VK----G---SIT 167 (471)
Q Consensus 97 ~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~-~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~-~~----~---~il 167 (471)
.++..++....|+|.|-.......+|+|||+| .+| ++..+...+.++|....+.--..-..+ .+ + ...
T Consensus 181 ~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPr---ai~~~~~~i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~ 257 (446)
T PRK10197 181 GAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVR---ATNSVIWRISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVL 257 (446)
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHH---HHHHHHHHHHHHHHHHHHHHheecCcCcccccccCcHHHHH
Confidence 35667778899999999999999999999965 777 777788888888887655422221111 11 0 011
Q ss_pred eecCCCCCChHHHHHHHHHHHHHHHhhccccchhHHHHHHHHh--------hhcCCCChhhHHHHHHHHHHHHHHHHHHH
Q psy14360 168 LNLSDRKDDPLALVVVGSIGFGILCTYSLQFYVPVAIIWAELE--------EKYGPFKHPAFGETILRVSLVLLTCKLAL 239 (471)
Q Consensus 168 ~nl~~~~~~~~~~v~~~~~~l~l~~s~pl~~~p~~~~~~~~~~--------~~~~~~~~~~~~~~~~r~~~~~~~~~iA~ 239 (471)
+.... .....+......++.+.+.--..+...+.++..-+ .+.++++.+ ..-..+...+..+..+...
T Consensus 258 ~~~g~---~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~~~~~~~~~~~P-~~Ail~~~~~~~l~~l~~~ 333 (446)
T PRK10197 258 ELLNI---PHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAVMGKINRSKTP-YVAVLLSTGAAFLTVVVNY 333 (446)
T ss_pred HHcCc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHhhCcCCCc-HHHHHHHHHHHHHHHHHHh
Confidence 12221 23445555555666555555445555555554322 122222222 2222222222222222222
Q ss_pred hhcc--h-hhhh-hhhhhhhHhhhhhHHHHhhhc
Q psy14360 240 VVVG--S-IGFG-ILCTYSLQFYVPVAIIWAELE 269 (471)
Q Consensus 240 ~ip~--~-slvG-s~~~~~l~fi~P~l~~l~~~~ 269 (471)
..|+ + .++. +.....+.+.++.+-++++++
T Consensus 334 ~~~~~~~~~l~~~~~~~~li~y~~~~~a~i~lr~ 367 (446)
T PRK10197 334 YAPAKVFKFLIDSSGAIALLVYLVIAVSQLRMRK 367 (446)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2232 3 3332 223344788888888888873
No 27
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=96.52 E-value=0.015 Score=59.71 Aligned_cols=111 Identities=14% Similarity=0.162 Sum_probs=75.7
Q ss_pred ccchhHHHHHHHHhhccceeeecchhhcccccCCCcccchhhhHHHHHHHHHHHHhhhhhhcccCccc---cce---eee
Q psy14360 96 IQQIPLFFGTVIFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVK---GSI---TLN 169 (471)
Q Consensus 96 ~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~~~---~~i---l~n 169 (471)
+++....++...|+|.|-.......+|+|| |+.+| .+..+..++.++|......-....+++.. ++. ...
T Consensus 187 ~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~-k~ip~---ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (426)
T PF13520_consen 187 WPGFLAGFSVAFFAFSGFEAIASLAEENKN-KTIPR---AIIISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAV 262 (426)
T ss_dssp SSHHHHHHHHHGGGGTTTTHHHHGGGGSSS-HHHHH---HHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHH
T ss_pred ccchhhHHHHHHhhcccccccccccccccc-hhhee---ecccchhHHHHHHhhhhheeeecccchhhhcccccccccch
Confidence 345667888899999999999999999998 77888 89999999999999987766555544211 121 001
Q ss_pred cCCC-CCChHHHHHHHHHHHHHHHhhccccchhHHHHHHHHh
Q psy14360 170 LSDR-KDDPLALVVVGSIGFGILCTYSLQFYVPVAIIWAELE 210 (471)
Q Consensus 170 l~~~-~~~~~~~v~~~~~~l~l~~s~pl~~~p~~~~~~~~~~ 210 (471)
+-+. .+++...+..+...++.+.+..-......+.++..-+
T Consensus 263 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~ 304 (426)
T PF13520_consen 263 LASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMAR 304 (426)
T ss_dssp HHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccccccccccccccccccccccchhhcchhhccccccc
Confidence 1000 0235566666777777777766666666666665543
No 28
>PRK10249 phenylalanine transporter; Provisional
Probab=96.51 E-value=0.041 Score=57.30 Aligned_cols=169 Identities=11% Similarity=0.113 Sum_probs=88.8
Q ss_pred ccchhHHHHHHHHhhccceeeecchhhcccccC-CCcccchhhhHHHHHHHHHHHHhhhhhhcccCcc----ccceeeec
Q psy14360 96 IQQIPLFFGTVIFAFEGIALVLPLQREMKKKKN-FNSSFGVLNMGSILIIALMLSMGFFGYLKYGENV----KGSITLNL 170 (471)
Q Consensus 96 ~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~-~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~~----~~~il~nl 170 (471)
+.++...+....|+|.|-.......+|+|||+| .+| ++..+.....++|......-....+++. +++...-+
T Consensus 208 ~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~k~iPr---ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~ 284 (458)
T PRK10249 208 WNGLILSLAVIMFSFGGLELIGITAAEARDPEKSIPK---AVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIF 284 (458)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHhhHHHH---HHHHHHHHHHHHHHHHHHHHheeccccccCccCCcHHHHH
Confidence 345567788899999999999999999999965 777 8888888888888775443332222211 01111000
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhhccccchhHHHHHHHHh--------hhcCCCChhhHHHHHHHHHHHHHHHHHHHhhc
Q psy14360 171 SDRKDDPLALVVVGSIGFGILCTYSLQFYVPVAIIWAELE--------EKYGPFKHPAFGETILRVSLVLLTCKLALVVV 242 (471)
Q Consensus 171 ~~~~~~~~~~v~~~~~~l~l~~s~pl~~~p~~~~~~~~~~--------~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~ip 242 (471)
.+...+....+......++.+.+.--..+...+.++..-+ .+.++++.+ .....+...+..+..++....|
T Consensus 285 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~sR~l~a~ardg~lP~~~~kv~~~~~P-~~All~~~~i~~l~~l~~~~~~ 363 (458)
T PRK10249 285 HNLDSNVVASALNFVILVASLSVYNSGVYSNSRMLFGLSVQGNAPKFLTRVSRRGVP-INSLMLSGAITSLVVLINYLLP 363 (458)
T ss_pred HHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHhCCCCCC-HHHHHHHHHHHHHHHHHHHhCh
Confidence 0000123333444444444444433223334444443211 122222222 2223333333333333333334
Q ss_pred c--h-hhhhhh-hhhhhHhhhhhHHHHhhh
Q psy14360 243 G--S-IGFGIL-CTYSLQFYVPVAIIWAEL 268 (471)
Q Consensus 243 ~--~-slvGs~-~~~~l~fi~P~l~~l~~~ 268 (471)
. + .+++.. ....+.+++|++.+++.+
T Consensus 364 ~~~f~~l~~~~~~~~~i~y~~~~~~~l~~r 393 (458)
T PRK10249 364 QKAFGLLMALVVATLLLNWIMICLAHLRFR 393 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 2 333322 256788999999999987
No 29
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=96.44 E-value=0.19 Score=52.13 Aligned_cols=53 Identities=21% Similarity=0.202 Sum_probs=42.9
Q ss_pred chhHHHHHHHHhhccceeeecchhhccccc-CCCcccchhhhHHHHHHHHHHHHhhh
Q psy14360 98 QIPLFFGTVIFAFEGIALVLPLQREMKKKK-NFNSSFGVLNMGSILIIALMLSMGFF 153 (471)
Q Consensus 98 ~~~~~~g~~~faf~~~~~~~~i~~~m~~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~~ 153 (471)
++..++....|+|.|-.......+|+|||+ +.+| ++..+......+|+.....
T Consensus 202 ~~~~a~~~~~~af~G~e~~~~~a~E~k~P~r~iPr---Ai~~~~~~~~~~y~l~~~~ 255 (452)
T TIGR01773 202 AVLLAILVTMFSFMGTEIVTIAAAESSNPIKSITR---ATNSVIWRIIVFYLGSIFI 255 (452)
T ss_pred HHHHHHHHHHHHhccHHHHhHHHHhhcChhhHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 466677889999999999999999999996 5777 7766777777888876443
No 30
>PRK10655 potE putrescine transporter; Provisional
Probab=96.43 E-value=0.045 Score=56.58 Aligned_cols=55 Identities=9% Similarity=0.071 Sum_probs=45.8
Q ss_pred chhHHHHHHHHhhccceeeecchhhccccc-CCCcccchhhhHHHHHHHHHHHHhhhhh
Q psy14360 98 QIPLFFGTVIFAFEGIALVLPLQREMKKKK-NFNSSFGVLNMGSILIIALMLSMGFFGY 155 (471)
Q Consensus 98 ~~~~~~g~~~faf~~~~~~~~i~~~m~~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~~gY 155 (471)
++..++....|+|.|-.......+|+|||+ +.+| ++..+..++.++|........
T Consensus 190 ~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPr---Ai~~~~~~~~~~Y~l~~~~~~ 245 (438)
T PRK10655 190 AVGSSIAMTLWAFLGLESACANSDAVENPERNVPI---AVLGGTLGAAVIYIVSTNVIA 245 (438)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccH---HHHHHHHHHHHHHHHHHHHHH
Confidence 444556678999999999999999999995 6888 899999999999988765443
No 31
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=96.38 E-value=0.047 Score=58.27 Aligned_cols=55 Identities=15% Similarity=0.103 Sum_probs=46.9
Q ss_pred cchhHHHHHHHHhhccceeeecchhhcccccC-CCcccchhhhHHHHHHHHHHHHhhhh
Q psy14360 97 QQIPLFFGTVIFAFEGIALVLPLQREMKKKKN-FNSSFGVLNMGSILIIALMLSMGFFG 154 (471)
Q Consensus 97 ~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~-~~~~~~v~~~s~~~~~~~Y~~~g~~g 154 (471)
.++........|+|.|-..+....+|+|||+| .++ .+..+..++.++|..+...-
T Consensus 231 ~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~r~iP~---aii~sl~i~~vlY~lv~~~l 286 (557)
T TIGR00906 231 TGVLSGAATCFFAFIGFDAIATTGEEVKNPQRAIPI---GIVTSLLVCFVAYFLMSAAL 286 (557)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhHHhccCccccccH---HHHHHHHHHHHHHHHHHHHH
Confidence 35566777889999999999999999999965 788 89999999999999886553
No 32
>PRK10238 aromatic amino acid transporter; Provisional
Probab=96.37 E-value=0.1 Score=54.31 Aligned_cols=168 Identities=10% Similarity=0.109 Sum_probs=83.8
Q ss_pred chhHHHHHHHHhhccceeeecchhhcccccC-CCcccchhhhHHHHHHHHHHHHhhh--hhhcccCc--cccceeeecCC
Q psy14360 98 QIPLFFGTVIFAFEGIALVLPLQREMKKKKN-FNSSFGVLNMGSILIIALMLSMGFF--GYLKYGEN--VKGSITLNLSD 172 (471)
Q Consensus 98 ~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~-~~~~~~v~~~s~~~~~~~Y~~~g~~--gY~~fG~~--~~~~il~nl~~ 172 (471)
++...++...|+|.|-.......+|+|||+| .+| ++..+.....+.|...-.. +...+.+- ..++...-+.+
T Consensus 201 ~~~~~~~~~~~af~G~e~~~~~aeE~knP~r~iPr---Ai~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~ 277 (456)
T PRK10238 201 GLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPK---ATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHE 277 (456)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHhhcChhhHHHH---HHHHHHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHH
Confidence 3445667789999999999999999999964 777 7766666666666554222 11111111 01111110100
Q ss_pred CCCChHHHHHHHHHHHHHHHhhccccchhHHHHHHHHh--------hhcCCCChhhHHHHHHHHHHHHHHHHHHHhhcc-
Q psy14360 173 RKDDPLALVVVGSIGFGILCTYSLQFYVPVAIIWAELE--------EKYGPFKHPAFGETILRVSLVLLTCKLALVVVG- 243 (471)
Q Consensus 173 ~~~~~~~~v~~~~~~l~l~~s~pl~~~p~~~~~~~~~~--------~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~ip~- 243 (471)
..+.....+......++.+.+.--..+...+.++..=+ .+.++++.+ ..-..+...+..+..++....|+
T Consensus 278 ~g~~~~~~i~~~~i~~~~~s~~~~~~~~~sR~l~a~ardg~lP~~f~kv~~~~~P-~~Ail~~~~i~~l~~l~~~~~~~~ 356 (456)
T PRK10238 278 LGDTFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAPKALASVDKRGVP-VNTILVSALVTALCVLINYLAPES 356 (456)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhCcCCCc-HHHHHHHHHHHHHHHHHHhcChHH
Confidence 00123334445555555544443334455555543321 111222222 22222233322222222223343
Q ss_pred -h-hhhhh-hhhhhhHhhhhhHHHHhhhc
Q psy14360 244 -S-IGFGI-LCTYSLQFYVPVAIIWAELE 269 (471)
Q Consensus 244 -~-slvGs-~~~~~l~fi~P~l~~l~~~~ 269 (471)
+ .+++. ..+..+.+.+|.+.+++.++
T Consensus 357 ~f~~l~~~~~~~~~i~y~~~~~~~l~~r~ 385 (456)
T PRK10238 357 AFGLLMALVVSALVINWAMISLAHMKFRR 385 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 33332 23566889999999999883
No 33
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=96.36 E-value=0.18 Score=52.64 Aligned_cols=51 Identities=4% Similarity=0.155 Sum_probs=41.4
Q ss_pred HHHHhhccceeeecchhhccccc-CCCcccchhhhHHHHHHHHHHHHhhhhhhcc
Q psy14360 105 TVIFAFEGIALVLPLQREMKKKK-NFNSSFGVLNMGSILIIALMLSMGFFGYLKY 158 (471)
Q Consensus 105 ~~~faf~~~~~~~~i~~~m~~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~f 158 (471)
...|+|.|-.......+|+|||+ +.+| ++..+...+.++|....+.-...-
T Consensus 202 ~~~~af~G~e~~~~~a~E~knP~r~iPr---Ai~~~~~~~~~~y~l~~~~~~~~~ 253 (474)
T TIGR03813 202 SIFLFYAGMEMNAVHVKDVDNPDKNYPI---AILIAALGTVLIFVLGTLAIAFII 253 (474)
T ss_pred HHHHHHhchhHhHHHHHhccCcccchhH---HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45789999999999999999995 5888 899999999999987655543333
No 34
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=96.28 E-value=0.037 Score=57.17 Aligned_cols=60 Identities=13% Similarity=0.022 Sum_probs=50.0
Q ss_pred ccchhHHHHHHHHhhccceeeecchhhccccc-CCCcccchhhhHHHHHHHHHHHHhhhhhhcc
Q psy14360 96 IQQIPLFFGTVIFAFEGIALVLPLQREMKKKK-NFNSSFGVLNMGSILIIALMLSMGFFGYLKY 158 (471)
Q Consensus 96 ~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~f 158 (471)
..++..++....|+|.|-.......+|+|||+ +.+| ++..+...+.++|+..........
T Consensus 186 ~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPr---Ai~~~~~iv~ilYil~~~~~~~~~ 246 (435)
T PRK10435 186 GHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPL---ATMLGTGLAGIIYIAATQVISGMF 246 (435)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccH---HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34566677889999999999999999999994 6888 899999999999998877654333
No 35
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=96.25 E-value=0.086 Score=55.03 Aligned_cols=163 Identities=13% Similarity=0.098 Sum_probs=90.0
Q ss_pred chhHHHHHHHHhhccceeeecchhhcccccCCCcccchhhhHHHHHHHHHHHHhhhhhhcccCc-c---ccc----eeee
Q psy14360 98 QIPLFFGTVIFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGEN-V---KGS----ITLN 169 (471)
Q Consensus 98 ~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~-~---~~~----il~n 169 (471)
++..++....|+|.|-.......+|.||||+.+| .+..+...+..+|..+....+...+++ . +++ +..+
T Consensus 196 ~~~~~~~~~~~~f~G~e~~~~~a~e~k~~k~ip~---ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~ 272 (468)
T TIGR03810 196 QVKNMMLVTVWVFIGIEGASMLSARAEKRSDVGK---ATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEH 272 (468)
T ss_pred HHHHHHHHHHHHHHhHhHHhhhHhhccCcccchH---HHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHH
Confidence 3445667789999999998899999999888888 899999999999998877655444321 1 111 1111
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHhhccccchhHHHHHHHH--------hhhcCCCChhhHHHHHHHHHHHHHHHHHHHhh
Q psy14360 170 LSDRKDDPLALVVVGSIGFGILCTYSLQFYVPVAIIWAEL--------EEKYGPFKHPAFGETILRVSLVLLTCKLALVV 241 (471)
Q Consensus 170 l~~~~~~~~~~v~~~~~~l~l~~s~pl~~~p~~~~~~~~~--------~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~i 241 (471)
.- ..+...+..+...++.+.+.--......+..+..= +.+.++++.+ ..-..+...+..+..++. ..
T Consensus 273 ~~---g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~ardg~lP~~f~k~~~~~tP-~~al~~~~~i~~~~~l~~-~~ 347 (468)
T TIGR03810 273 MV---GTWGAVLINIGLIISILGAWLSWTLLPAEIPLLMAKDKLMPKYFGKENANGAP-TNALWLTNGLIQIFLLTT-LF 347 (468)
T ss_pred Hc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhCCCCCC-HHHHHHHHHHHHHHHHHH-Hc
Confidence 11 12344555556666665554444444444443321 1122222222 212222222222111111 12
Q ss_pred cc--h-hhhh-hhhhhhhHhhhhhHHHHhhh
Q psy14360 242 VG--S-IGFG-ILCTYSLQFYVPVAIIWAEL 268 (471)
Q Consensus 242 p~--~-slvG-s~~~~~l~fi~P~l~~l~~~ 268 (471)
++ + .++. +.....+.|.++++.++|++
T Consensus 348 ~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~ 378 (468)
T TIGR03810 348 SEQAYNFAISLATSAILVPYLWSAAYQVKLS 378 (468)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 3 2322 22345678889999888887
No 36
>KOG1287|consensus
Probab=96.18 E-value=0.12 Score=53.01 Aligned_cols=163 Identities=12% Similarity=0.084 Sum_probs=97.9
Q ss_pred cccchhHHHHHHHHhhccceeeecchhhccccc-CCCcccchhhhHHHHHHHHHHHHhhhhhhcccCccccceeee----
Q psy14360 95 HIQQIPLFFGTVIFAFEGIALVLPLQREMKKKK-NFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGSITLN---- 169 (471)
Q Consensus 95 ~~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~~~~~il~n---- 169 (471)
+..++..++-.-.|+|.|=..+=.+.+|+|||+ ..++ +...++.++++.|+.+=+..+.+-- .+.++.+
T Consensus 202 ~~g~i~lafysglfa~~GWd~lN~vteEiknP~ktLP~---Ai~isi~lvt~iYil~NvAy~~vls---~~e~l~S~aVa 275 (479)
T KOG1287|consen 202 DVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPRRTLPR---AILISIPLVTVIYVLVNVAYFTVLS---PDEILSSDAVA 275 (479)
T ss_pred chHHHHHHHHHhhhcccCchhhccchHhhcCccccchH---HHHHhhHHHHHHHHHhHhheeEecC---HHHhcccchHH
Confidence 344577788888899999999889999999995 5777 9999999999999999776554432 1222111
Q ss_pred --cCCCCCChHHHHHHHHHHHHHHHhhccccchhHHHHHHHHhhh---------cCCCChhhHHHHHHHHHHHHHHHHHH
Q psy14360 170 --LSDRKDDPLALVVVGSIGFGILCTYSLQFYVPVAIIWAELEEK---------YGPFKHPAFGETILRVSLVLLTCKLA 238 (471)
Q Consensus 170 --l~~~~~~~~~~v~~~~~~l~l~~s~pl~~~p~~~~~~~~~~~~---------~~~~~~~~~~~~~~r~~~~~~~~~iA 238 (471)
+.+..-+.+..++.++.+++.+.+.=-.++...+.++..-++. +.++..+ + ..+.+.....++.
T Consensus 276 v~Fa~~~~G~~~~~ip~~ValS~~G~~n~~ifs~SR~~~~~areG~LP~~~s~i~~~~~TP-~----~allf~~~~~i~~ 350 (479)
T KOG1287|consen 276 VTFADRILGVFAWAIPFSVALSLIGSLNSVIFSSSRLFYAGAREGHLPAFFSMISVRRFTP-R----PALLFSGLLSIVL 350 (479)
T ss_pred HHHHHHhccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHccCccHHHHhhcCCCCCC-h----HHHHHHHHHHHHH
Confidence 1110011223556666666666665545555555554433221 1111111 1 2333444445555
Q ss_pred Hhhcch----hhhhhhhhhhhHhhhhhHHHHhhh
Q psy14360 239 LVVVGS----IGFGILCTYSLQFYVPVAIIWAEL 268 (471)
Q Consensus 239 ~~ip~~----slvGs~~~~~l~fi~P~l~~l~~~ 268 (471)
..+.|+ +.++=.-.....+.+=+++++|.+
T Consensus 351 ~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k 384 (479)
T KOG1287|consen 351 SLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWK 384 (479)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 556665 444444555566677788888887
No 37
>PRK10746 putative transport protein YifK; Provisional
Probab=96.06 E-value=0.17 Score=52.72 Aligned_cols=170 Identities=11% Similarity=0.069 Sum_probs=89.8
Q ss_pred ccchhHHHHHHHHhhccceeeecchhhccccc-CCCcccchhhhHHHHHHHHHHHHhhhhhhcccCcc-c---cceeeec
Q psy14360 96 IQQIPLFFGTVIFAFEGIALVLPLQREMKKKK-NFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENV-K---GSITLNL 170 (471)
Q Consensus 96 ~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~~-~---~~il~nl 170 (471)
+.++..++....|+|.|-..+....+|+|||+ +.+| +...+.....++|.......-.....+. . ++...-+
T Consensus 199 ~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~k~iP~---Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~ 275 (461)
T PRK10746 199 WKGFLTALCIVVASYQGVELIGITAGEAKNPQVTLRS---AVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTF 275 (461)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhcChhhHHHH---HHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHH
Confidence 34566788889999999999999999999995 5777 7777777777788775444333332211 1 1111000
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhhccccchhHHHHHHHHh--------hhcCCCChhhHHHHHHHHHHHHHHHHHHHhhc
Q psy14360 171 SDRKDDPLALVVVGSIGFGILCTYSLQFYVPVAIIWAELE--------EKYGPFKHPAFGETILRVSLVLLTCKLALVVV 242 (471)
Q Consensus 171 ~~~~~~~~~~v~~~~~~l~l~~s~pl~~~p~~~~~~~~~~--------~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~ip 242 (471)
.+........+.+....++.+.+.--.++...+.++..-+ .+.++++.+ .....+......+...+....|
T Consensus 276 ~~~g~~~~~~i~~~~il~a~~s~~n~~~~~~sR~l~~~a~~g~lP~~~~~~~~~g~P-~~al~~~~~~~~l~~~~~~~~~ 354 (461)
T PRK10746 276 AKIGITAAAGIINFVVLTAALSGCNSGMYSCGRMLYALAKNRQLPAAMAKVSRHGVP-VAGVAVSILILLVGSCLNYIIP 354 (461)
T ss_pred HHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHHhCCCCCc-HHHHHHHHHHHHHHHHHHHhcc
Confidence 0000112334455555555555544444555555554322 122222222 2222222222222223333444
Q ss_pred ch----hhhhhh--hhhhhHhhhhhHHHHhhhc
Q psy14360 243 GS----IGFGIL--CTYSLQFYVPVAIIWAELE 269 (471)
Q Consensus 243 ~~----slvGs~--~~~~l~fi~P~l~~l~~~~ 269 (471)
+- +.+-++ .+..+.++++.+-++|.++
T Consensus 355 ~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~r~ 387 (461)
T PRK10746 355 NPQRVFVYVYSASVLPGMVPWFVILISQLRFRR 387 (461)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 222222 2356788888888999873
No 38
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=96.02 E-value=0.0048 Score=62.55 Aligned_cols=121 Identities=11% Similarity=-0.014 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHhhcccCCcchhHHHHHHHHHHHHhhheEEEEeccCCCCCccCc---ccccccchhhhhhhHhhhcccc
Q psy14360 325 YHMAIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYILQDLPPVSTRN---YVGHIQQIPLFFGTVIFAFEGI 401 (471)
Q Consensus 325 ~~~~i~~~~~~pl~~~~~l~~ls~~S~~~~~~~~~~~~ii~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~faf~~~ 401 (471)
.+..++.+.+.++. .+..|..+.++.+.....+..++........+.......+ ....+.++..+++...++|+.|
T Consensus 116 ~~~~~~~~v~~~l~-~~G~~~~~~v~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~fg~~ 194 (381)
T TIGR00837 116 AIVLIFTVLFGSFV-WLSTSAVDRITRVLIFGKIIAFALVFSGLLPHVKGDLLLDVALDTSYWPYILSALPVCLTSFGFH 194 (381)
T ss_pred HHHHHHHHHHHHHH-HhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHhcCccccccHHHHHHHHHHHHHHHHcc
Confidence 33333333343443 3445677777766655544333222111111111000001 0124556678888999999999
Q ss_pred ccchhhHHhhhc-CCCCCcccchhhhHHHHHHHHHHHHHhhhhhhccCc
Q psy14360 402 ALVLPLQREMKK-KKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGEN 449 (471)
Q Consensus 402 ~~~~~i~~~M~~-p~~f~~~~~vl~~~~~~~~~~y~~~g~~gY~~fG~~ 449 (471)
.+++++.++++| +|+.+| +...+..+++++|+.+........+.+
T Consensus 195 ~~i~~~~~~~~~~~k~i~r---aii~g~~i~~~lY~l~~~~~~g~~~~~ 240 (381)
T TIGR00837 195 GNVPSLYKYYDGNVKKVKK---SILIGSAIALVLYILWQLATMGNLPRS 240 (381)
T ss_pred cccHHHHHHhccCHHHHHH---HHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 999999999974 456666 788999999999998876666555543
No 39
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=95.91 E-value=0.082 Score=54.70 Aligned_cols=52 Identities=17% Similarity=0.096 Sum_probs=42.0
Q ss_pred chhHHHHHHHHhhccceeeecchhhccccc-CCCcccchhhhHHHHHHHHHHHHhh
Q psy14360 98 QIPLFFGTVIFAFEGIALVLPLQREMKKKK-NFNSSFGVLNMGSILIIALMLSMGF 152 (471)
Q Consensus 98 ~~~~~~g~~~faf~~~~~~~~i~~~m~~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~ 152 (471)
++..++....|+|.|.......-+|+|||+ +.+| ++..+..++..+|...-.
T Consensus 192 ~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~ipr---ai~~s~~~~~~~~~~~~~ 244 (442)
T TIGR00908 192 GVFAAIPFAIWFFLAVEGVAMAAEETKNPKRDIPR---GLIGAILTLLALAAGILV 244 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCH---HHHHHHHHHHHHHHHHHH
Confidence 345566667899999999999999999995 5788 888888888888876644
No 40
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=95.91 E-value=0.075 Score=55.07 Aligned_cols=55 Identities=13% Similarity=0.077 Sum_probs=45.9
Q ss_pred chhHHHHHHHHhhccceeeecchhhccccc-CCCcccchhhhHHHHHHHHHHHHhhhhh
Q psy14360 98 QIPLFFGTVIFAFEGIALVLPLQREMKKKK-NFNSSFGVLNMGSILIIALMLSMGFFGY 155 (471)
Q Consensus 98 ~~~~~~g~~~faf~~~~~~~~i~~~m~~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~~gY 155 (471)
++...+....|+|.|-.......+|+|||+ +.+| ++..+..++.++|....+.--
T Consensus 192 ~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iPr---ai~~s~~i~~v~Y~l~~~~~~ 247 (445)
T PRK10644 192 AIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPI---ATIGGVLIAAVCYVLSSTAIM 247 (445)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchhH---HHHHHHHHHHHHHHHHHHHHH
Confidence 344456678999999999999999999995 5788 899999999999998876633
No 41
>PRK15049 L-asparagine permease; Provisional
Probab=95.88 E-value=0.42 Score=50.33 Aligned_cols=163 Identities=12% Similarity=0.045 Sum_probs=85.8
Q ss_pred HHHHHHHhhccceeeecchhhcccccC-CCcccchhhhHHHHHHHHHHHHhhhhhhcccC-ccc---cceeeecCCCCCC
Q psy14360 102 FFGTVIFAFEGIALVLPLQREMKKKKN-FNSSFGVLNMGSILIIALMLSMGFFGYLKYGE-NVK---GSITLNLSDRKDD 176 (471)
Q Consensus 102 ~~g~~~faf~~~~~~~~i~~~m~~p~~-~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~-~~~---~~il~nl~~~~~~ 176 (471)
.+....|+|.|-..+....+|+|||+| .+| ++..++..+.++|+..........+. +.+ ++...-+.+....
T Consensus 225 ~~~~~~faf~G~e~i~~~aeE~knP~r~iPr---Ai~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~~ 301 (499)
T PRK15049 225 LIQGVVFAFASIEMVGTAAGECKDPQTMVPK---AINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGVP 301 (499)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhcChhhHHHH---HHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcCch
Confidence 345688999999999999999999965 777 78877788888888765543333321 111 1111101000012
Q ss_pred hHHHHHHHHHHHHHHHhhccccchhHHHHHHHHh--------hhcCCCChhhHHHHHHHHHHHHHHHHHHHhhcc--h-h
Q psy14360 177 PLALVVVGSIGFGILCTYSLQFYVPVAIIWAELE--------EKYGPFKHPAFGETILRVSLVLLTCKLALVVVG--S-I 245 (471)
Q Consensus 177 ~~~~v~~~~~~l~l~~s~pl~~~p~~~~~~~~~~--------~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~ip~--~-s 245 (471)
+...+..+...++.+.+.--..+...+.++..-+ .+.++++.+ ..-..+..++..+..++....|. + .
T Consensus 302 ~~~~ii~~~ilia~~ss~ns~~~~~sR~l~a~Ardg~lP~~f~kv~k~~~P-~~Ail~~~~i~~l~~~l~~~~~~~~f~~ 380 (499)
T PRK15049 302 YIGSIMNIVVLTAALSSLNSGLYCTGRILRSMAMGGSAPSFMAKMSRQHVP-YAGILATLVVYVVGVFLNYLVPSRVFEI 380 (499)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHhCCCCCC-HHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 2334555555555555544444445555544322 111222222 22222333322222223333343 2 2
Q ss_pred hhh-hhhhhhhHhhhhhHHHHhhh
Q psy14360 246 GFG-ILCTYSLQFYVPVAIIWAEL 268 (471)
Q Consensus 246 lvG-s~~~~~l~fi~P~l~~l~~~ 268 (471)
+++ +..+..+.+.+|.+.+++++
T Consensus 381 l~~~~~~~~li~y~~~~~~~l~~R 404 (499)
T PRK15049 381 VLNFASLGIIASWAFIIVCQMRLR 404 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 33456778999999999887
No 42
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=95.80 E-value=0.17 Score=52.83 Aligned_cols=55 Identities=25% Similarity=0.219 Sum_probs=42.9
Q ss_pred chhHHHHHHHHhhccceeeecchhhcccccC-CCcccchhhhHHHHHHHHHHHHhhhhh
Q psy14360 98 QIPLFFGTVIFAFEGIALVLPLQREMKKKKN-FNSSFGVLNMGSILIIALMLSMGFFGY 155 (471)
Q Consensus 98 ~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~-~~~~~~v~~~s~~~~~~~Y~~~g~~gY 155 (471)
++..++....|+|.|-.......+|+|||+| .+| ++..+.....+.|......-+
T Consensus 212 ~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~iPr---ai~~~~~~~~~~y~l~~~~~~ 267 (469)
T PRK11049 212 GFFAGFQIAVFAFVGIELVGTTAAETKDPEKSLPR---AINSIPIRIIMFYVFALIVIM 267 (469)
T ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHhcCHhhHHHH---HHHHHHHHHHHHHHHHHHHHe
Confidence 4667778899999999999999999999965 677 776666666777776655443
No 43
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=95.62 E-value=0.33 Score=50.76 Aligned_cols=56 Identities=13% Similarity=0.204 Sum_probs=46.3
Q ss_pred chhHHHHHHHHhhccceeeecchhhcccccCCCcccchhhhHHHHHHHHHHHHhhhhhh
Q psy14360 98 QIPLFFGTVIFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYL 156 (471)
Q Consensus 98 ~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~ 156 (471)
++........|+|.|-.......+|+||+|+.+| .+..+..++.++|.........
T Consensus 200 ~~~~~~~~~~~af~G~e~~~~~a~E~k~~r~iPr---ai~~~~~i~~~~Yil~~~~~~~ 255 (473)
T TIGR00905 200 QVKNTMLVTLWVFIGIEGAVVSSGRAKNKSDVGK---ATVLGTLGALVIYILITLLSLG 255 (473)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhccccchH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 4455667789999999999999999999667888 8999999999999988665433
No 44
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=95.45 E-value=0.27 Score=51.46 Aligned_cols=49 Identities=10% Similarity=-0.157 Sum_probs=37.2
Q ss_pred HHHHHHHhhccceeeecchhhccccc-CCCcccchhhhHHHHHHHHHHHHhhh
Q psy14360 102 FFGTVIFAFEGIALVLPLQREMKKKK-NFNSSFGVLNMGSILIIALMLSMGFF 153 (471)
Q Consensus 102 ~~g~~~faf~~~~~~~~i~~~m~~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~~ 153 (471)
..-...|+|.|-.......+|+|||+ +.+| .+..+..+...+|...-+.
T Consensus 218 ~~~~~~~~f~G~e~~~~~aeE~knP~r~iPr---ai~~s~~i~~~~~~~~~~~ 267 (475)
T TIGR03428 218 SGLMAAYVMVGFGSAGELSEETKNPRRVAPR---TILTALSVSALGGGLMILG 267 (475)
T ss_pred HHHHHHHHhcCcchHHHHHHHhcCcchhhhH---HHHHHHHHHHHHHHHHHHH
Confidence 33456799999999999999999995 4777 7888887776655554443
No 45
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=95.45 E-value=0.53 Score=49.65 Aligned_cols=48 Identities=21% Similarity=0.243 Sum_probs=39.0
Q ss_pred HHHHHHHhhccceeeecchhhccccc-CCCcccchhhhHHHHHHHHHHHHhh
Q psy14360 102 FFGTVIFAFEGIALVLPLQREMKKKK-NFNSSFGVLNMGSILIIALMLSMGF 152 (471)
Q Consensus 102 ~~g~~~faf~~~~~~~~i~~~m~~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~ 152 (471)
.+....|+|.|-.......+|+|||+ +++| ++..+..++..+|....+
T Consensus 199 ~~~~~~faf~G~E~~a~~a~E~knP~r~~Pr---Ai~~~~i~~~~l~~l~~~ 247 (507)
T TIGR00910 199 VFVAFIGAYMGVEASASHINELENPGRDYPL---AMILLMIAAICLDAIGGF 247 (507)
T ss_pred HHHHHHHHHhcHHHHHHHHHHccCCcccccH---HHHHHHHHHHHHHHHHHH
Confidence 44446889999999999999999995 5888 888888888888876443
No 46
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=95.44 E-value=0.22 Score=51.63 Aligned_cols=55 Identities=13% Similarity=0.210 Sum_probs=45.9
Q ss_pred cchhHHHHHHHHhhccceeeecchhhccccc-CCCcccchhhhHHHHHHHHHHHHhhhh
Q psy14360 97 QQIPLFFGTVIFAFEGIALVLPLQREMKKKK-NFNSSFGVLNMGSILIIALMLSMGFFG 154 (471)
Q Consensus 97 ~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~~g 154 (471)
.++...+....|+|.|-.......+|+|||+ +.+| ++..+..++.++|.......
T Consensus 195 ~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iP~---Ai~~~~~i~~~~Y~l~~~~~ 250 (445)
T PRK11357 195 MALLAGISATSWSYTGMASICYMTGEIKNPGKTMPR---ALIGSCLLVLVLYTLLALVI 250 (445)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhhHHHhcCccccchH---HHHHHHHHHHHHHHHHHHHH
Confidence 3455567778999999999999999999996 4688 89999999999998876543
No 47
>PRK10580 proY putative proline-specific permease; Provisional
Probab=95.41 E-value=0.4 Score=49.84 Aligned_cols=53 Identities=19% Similarity=0.318 Sum_probs=41.3
Q ss_pred chhHHHHHHHHhhccceeeecchhhcccccC-CCcccchhhhHHHHHHHHHHHHhhh
Q psy14360 98 QIPLFFGTVIFAFEGIALVLPLQREMKKKKN-FNSSFGVLNMGSILIIALMLSMGFF 153 (471)
Q Consensus 98 ~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~-~~~~~~v~~~s~~~~~~~Y~~~g~~ 153 (471)
++..++....|+|.|-.......+|+|||+| .++ ++..+......+|......
T Consensus 200 ~~~~~~~~~~fsf~G~e~~~~~a~E~knP~k~iPr---Ai~~~~~~~~~~y~~~~~~ 253 (457)
T PRK10580 200 GMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIPR---AINSVPMRILVFYVGTLFV 253 (457)
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHhcChhhHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 4556677889999999999999999999965 667 6666666667777766443
No 48
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=95.37 E-value=0.32 Score=50.41 Aligned_cols=60 Identities=15% Similarity=0.204 Sum_probs=50.1
Q ss_pred chhHHHHHHHHhhccceeeecchhhcccc-cCCCcccchhhhHHHHHHHHHHHHhhhhhhcccC
Q psy14360 98 QIPLFFGTVIFAFEGIALVLPLQREMKKK-KNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGE 160 (471)
Q Consensus 98 ~~~~~~g~~~faf~~~~~~~~i~~~m~~p-~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~ 160 (471)
++...+....++|.|-....+..+|+||| |+.+| .+..++..+..+|......-....++
T Consensus 202 ~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~ip~---aii~~~~~~~~~y~~~~~~~~~~~~~ 262 (466)
T COG0531 202 GILAAILLAFFAFTGFEAIATLAEEVKNPKRTIPR---AIILSLLIVLILYILGALVIVGVLPA 262 (466)
T ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHhcCccccccH---HHHHHHHHHHHHHHHHHHHHHhCccH
Confidence 45566777899999999999999999999 45688 88899999999999888877666654
No 49
>TIGR00930 2a30 K-Cl cotransporter.
Probab=95.35 E-value=0.65 Score=52.61 Aligned_cols=52 Identities=12% Similarity=0.137 Sum_probs=44.8
Q ss_pred hhHHHHHHHHhhccceeeecchhhccccc-CCCcccchhhhHHHHHHHHHHHHhhh
Q psy14360 99 IPLFFGTVIFAFEGIALVLPLQREMKKKK-NFNSSFGVLNMGSILIIALMLSMGFF 153 (471)
Q Consensus 99 ~~~~~g~~~faf~~~~~~~~i~~~m~~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~~ 153 (471)
+...++++.+||.|-.....+-+|+|||+ +.++ .+..+..+++++|+++.++
T Consensus 282 f~~~~ai~F~A~tGi~agan~sgElKnP~r~IPr---atl~ai~i~~vlYllv~~~ 334 (953)
T TIGR00930 282 FFSLFGIFFPSVTGILAGANISGDLKDPQKAIPK---GTLLAILTTTVVYLGSVVL 334 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccChhhhhHH---HHHHHHHHHHHHHHHHHHH
Confidence 66677888889999888899999999995 4778 8999999999999999754
No 50
>PRK11387 S-methylmethionine transporter; Provisional
Probab=95.34 E-value=0.31 Score=50.89 Aligned_cols=53 Identities=15% Similarity=0.174 Sum_probs=43.5
Q ss_pred hhHHHHHHHHhhccceeeecchhhcccccC-CCcccchhhhHHHHHHHHHHHHhhhh
Q psy14360 99 IPLFFGTVIFAFEGIALVLPLQREMKKKKN-FNSSFGVLNMGSILIIALMLSMGFFG 154 (471)
Q Consensus 99 ~~~~~g~~~faf~~~~~~~~i~~~m~~p~~-~~~~~~v~~~s~~~~~~~Y~~~g~~g 154 (471)
+...+....|+|.|-.......+|+|||+| .++ ++..+...+..+|.......
T Consensus 208 ~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iPr---Ai~~~~~~~~~~y~~~~~~~ 261 (471)
T PRK11387 208 ILMTMVAVNFAFSGTELIGIAAGETENPAKVIPV---AIRTTIARLVIFFVGTVLVL 261 (471)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHhcChhhHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 445566688999999999999999999965 777 88888888888888876543
No 51
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=95.25 E-value=0.81 Score=47.84 Aligned_cols=54 Identities=19% Similarity=0.220 Sum_probs=44.7
Q ss_pred cchhHHHHHHHHhhccceeeecchhhccccc-CCCcccchhhhHHHHHHHHHHHHhhh
Q psy14360 97 QQIPLFFGTVIFAFEGIALVLPLQREMKKKK-NFNSSFGVLNMGSILIIALMLSMGFF 153 (471)
Q Consensus 97 ~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~~ 153 (471)
.++..++....|+|.|-.......+|+|||+ +.+| ++..+...+..+|......
T Consensus 197 ~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~iPr---ai~~~~~~~~~~Y~l~~~~ 251 (478)
T TIGR00913 197 KGVCSVFVTAAFSFGGTELVALTAGEAANPRKSIPR---AAKRTFWRILVFYILTLFL 251 (478)
T ss_pred HHHHHHHHHHHhhhccHHHHHHHHHhhcChhhHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 3455566778999999999999999999995 5778 8889999999999987543
No 52
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=94.62 E-value=0.16 Score=53.53 Aligned_cols=56 Identities=14% Similarity=0.176 Sum_probs=47.2
Q ss_pred cchhHHHHHHHHhhccceeeecchhhccccc-CCCcccchhhhHHHHHHHHHHHHhhhhh
Q psy14360 97 QQIPLFFGTVIFAFEGIALVLPLQREMKKKK-NFNSSFGVLNMGSILIIALMLSMGFFGY 155 (471)
Q Consensus 97 ~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~~gY 155 (471)
.++..++....|+|.|-.......+|+|||+ +.+| ++..+..++.++|......-.
T Consensus 235 ~~~~~a~~~~~~af~G~e~~~~~a~E~knP~r~iPr---Ai~~s~~~v~~~Y~l~~~a~~ 291 (501)
T TIGR00911 235 GGIVLAFYSGIWAYGGWNYLNFVTEEVKNPYRTLPI---AIIISMPIVTFIYVLTNIAYF 291 (501)
T ss_pred HHHHHHHHHHHHHHHhHHHHhhhHHHhcCchhhhHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 3456677889999999999999999999995 5788 899999999999999865443
No 53
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=94.51 E-value=1.4 Score=46.25 Aligned_cols=53 Identities=25% Similarity=0.249 Sum_probs=43.6
Q ss_pred hhHHHHHHHHhhccceeeecchhhccccc-CCCcccchhhhHHHHHHHHHHHHhhhh
Q psy14360 99 IPLFFGTVIFAFEGIALVLPLQREMKKKK-NFNSSFGVLNMGSILIIALMLSMGFFG 154 (471)
Q Consensus 99 ~~~~~g~~~faf~~~~~~~~i~~~m~~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~~g 154 (471)
+..++....|+|.|-.......+|+|||+ +.+| ++..+...+..+|....++-
T Consensus 213 ~~~~~~~~~~~f~G~e~~~~~a~E~~~p~~~~p~---ai~~~~~~~~~~y~l~~~~~ 266 (496)
T PRK15238 213 VLSFVVFAIFAYGGIEAVGGLVDKTENPEKNFPK---GIIIAAIVISIGYSLAIFLW 266 (496)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhccCCCccccH---HHHHHHHHHHHHHHHHHHHH
Confidence 44455667899999999999999999995 5888 88899998899998765443
No 54
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=94.50 E-value=1.4 Score=46.23 Aligned_cols=44 Identities=7% Similarity=-0.007 Sum_probs=33.6
Q ss_pred HHHHHHhhccceeeecchhhccccc-CCCcccchhhhHHHHHHHHHHH
Q psy14360 103 FGTVIFAFEGIALVLPLQREMKKKK-NFNSSFGVLNMGSILIIALMLS 149 (471)
Q Consensus 103 ~g~~~faf~~~~~~~~i~~~m~~p~-~~~~~~~v~~~s~~~~~~~Y~~ 149 (471)
+-...|+|.|-.......+|+|||+ +.+| ++..+..+..+++..
T Consensus 223 ~~~~~fsf~G~e~~~~~a~E~knP~r~iP~---Ai~~s~~i~~~~~~~ 267 (482)
T TIGR00907 223 LLNPAWSMTGYDGTAHMAEEIENPEVVGPR---AIIGAVAIGIVTGFC 267 (482)
T ss_pred hhhhHHHhcCcchhhHHHHhcCChhhhcCH---HHHHHHHHHHHHHHH
Confidence 3446699999999999999999995 5777 777777666554443
No 55
>PRK10836 lysine transporter; Provisional
Probab=94.31 E-value=1.1 Score=47.10 Aligned_cols=49 Identities=16% Similarity=0.073 Sum_probs=40.5
Q ss_pred HHHHHHhhccceeeecchhhccccc-CCCcccchhhhHHHHHHHHHHHHhhhh
Q psy14360 103 FGTVIFAFEGIALVLPLQREMKKKK-NFNSSFGVLNMGSILIIALMLSMGFFG 154 (471)
Q Consensus 103 ~g~~~faf~~~~~~~~i~~~m~~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~~g 154 (471)
.....|+|.|-.......+|+|||+ +.+| ++..++..+.++|......-
T Consensus 211 ~~~~~faf~G~e~~~~~a~E~knP~r~iPr---Ai~~~~~~v~~~Yvl~~~~~ 260 (489)
T PRK10836 211 AMIVGFSFQGTELIGIAAGESEDPAKNIPR---AVRQVFWRILLFYVFAILII 260 (489)
T ss_pred HHHHHHHHccHHHHHHHHHHhcCHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 3446699999999999999999995 4677 88888999999999776543
No 56
>PRK11021 putative transporter; Provisional
Probab=93.91 E-value=0.11 Score=53.05 Aligned_cols=56 Identities=20% Similarity=0.310 Sum_probs=48.3
Q ss_pred cccchhhhhhhHhhhccccccchhhHHhhhcCC-CCCcccchhhhHHHHHHHHHHHHHhh
Q psy14360 383 HIQQIPLFFGTVIFAFEGIALVLPLQREMKKKK-NFNSSFGVLNMGSILIIALMLSMGFF 441 (471)
Q Consensus 383 ~~~~~~~~~g~~~faf~~~~~~~~i~~~M~~p~-~f~~~~~vl~~~~~~~~~~y~~~g~~ 441 (471)
++.++..++....|+|.|.......-+|+|||+ +.+| ....+..++..+|+.....
T Consensus 175 ~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPr---Ai~~~~~~~~~lYil~~~~ 231 (410)
T PRK11021 175 EWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPR---ALMIGLLLAGLVYWACTVV 231 (410)
T ss_pred cHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccH---HHHHHHHHHHHHHHHHHHH
Confidence 456677888889999999999999999999986 5777 7889999999999987654
No 57
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=92.78 E-value=1.2 Score=44.57 Aligned_cols=202 Identities=15% Similarity=0.165 Sum_probs=104.8
Q ss_pred HhhccccchhhHHHHHHHHHHHH-hheeeeeecccCCCCCC-CCcc-ccccchhHHH-HHHHHhhccceeeecchhhccc
Q psy14360 50 AMIRNLKYIAPISAVANLIMGLG-IAAIYYYILQDLPPVST-RNYV-GHIQQIPLFF-GTVIFAFEGIALVLPLQREMKK 125 (471)
Q Consensus 50 ~~~~~l~~l~~~S~~~~~~~~~~-~~~v~~~~~~~~~~~~~-~~~~-~~~~~~~~~~-g~~~faf~~~~~~~~i~~~m~~ 125 (471)
...+.++..+..+.+-....+.. ...+......+. +.++ .|.+ .++.+..... ....++|.+.........++||
T Consensus 129 ~~~~Gi~~i~r~~~i~~~~~i~~~~~il~~~~~~~~-~~~~l~P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~ 207 (359)
T TIGR00912 129 IVRKGIEVLLRTAEILLIIFLILFILVLILLAPKLG-NIKNLLPVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSK 207 (359)
T ss_pred HHHccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cHHHccCccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCC
Confidence 44567777777777655444443 122222121111 1111 1111 1222322222 3567888888888888889999
Q ss_pred ccCCCcccchhhhHHHHHHHHHHHHhhhhhhcccCccccceeeecCCC------C-CC---hHHHHHHHHHHHHHHHhhc
Q psy14360 126 KKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGSITLNLSDR------K-DD---PLALVVVGSIGFGILCTYS 195 (471)
Q Consensus 126 p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~~~~~il~nl~~~------~-~~---~~~~v~~~~~~l~l~~s~p 195 (471)
|||.+| ....+...+..+|...-...-..+|.+..++. .+|.. + .+ ..-.+.-.....+.+....
T Consensus 208 ~~~~~k---~~~~~~~~~~~ly~~~~~~~i~~lg~~~~~~~--~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~ 282 (359)
T TIGR00912 208 KKKIKK---SIIKAIIIGVLLYILTTFVSISVFGGNVTKNL--YWPTLELIKLINIGDFIERFELIVMTFWVFIIFVKIA 282 (359)
T ss_pred hhhhHH---HHHHHHHHHHHHHHHHHHHHHheecHHHhhhh--cccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888 88899999999999887777777775432211 11110 0 00 1111222334455555565
Q ss_pred cccchhHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHHHHHHhhcch--------hhhhhhhhhhhHhhhhhHHHHhh
Q psy14360 196 LQFYVPVAIIWAELEEKYGPFKHPAFGETILRVSLVLLTCKLALVVVGS--------IGFGILCTYSLQFYVPVAIIWAE 267 (471)
Q Consensus 196 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~ip~~--------slvGs~~~~~l~fi~P~l~~l~~ 267 (471)
+.++...+.+.+.+.. ++++ ....-.+. +...++ ..||- ...+ ..+....+++|.++.+..
T Consensus 283 ~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~P~ll~~i~ 351 (359)
T TIGR00912 283 FYLYIAVKGLSKLFKK----RKYS---ILILPVLM--VIFSIS-FFPDSSNQLFDYLEFLP-IIAIVFFLLLPLILFIIV 351 (359)
T ss_pred HHHHHHHHHHHHHhCC----CCcc---hhHHHHHH--HHHHHH-HccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 6666666666654432 2221 11111111 222222 34652 2222 334567778999877776
Q ss_pred h
Q psy14360 268 L 268 (471)
Q Consensus 268 ~ 268 (471)
.
T Consensus 352 ~ 352 (359)
T TIGR00912 352 K 352 (359)
T ss_pred H
Confidence 6
No 58
>KOG1286|consensus
Probab=91.82 E-value=8.1 Score=41.08 Aligned_cols=110 Identities=15% Similarity=0.195 Sum_probs=70.6
Q ss_pred ccchhHHHHHHHHhhccceeeecchhhcccccC-CCcccchhhhHHHHHHHHHHHHhhhh-hhcccCc--cccceeeecC
Q psy14360 96 IQQIPLFFGTVIFAFEGIALVLPLQREMKKKKN-FNSSFGVLNMGSILIIALMLSMGFFG-YLKYGEN--VKGSITLNLS 171 (471)
Q Consensus 96 ~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~-~~~~~~v~~~s~~~~~~~Y~~~g~~g-Y~~fG~~--~~~~il~nl~ 171 (471)
+.++...+.+..|+|.|--.+-...+|-|||+| .++ +...++..+..+|....+.- -..=.++ ..++....-|
T Consensus 231 f~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~k~IP~---ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~sp 307 (554)
T KOG1286|consen 231 FKGVLSGAATAFFSFIGFELVATTAEEAKNPRKAIPK---AIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASP 307 (554)
T ss_pred cceeeHHHHHHHHHHhhHHHHHHHHHhccCCcccccH---HHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccH
Confidence 567778889999999999999999999999954 777 88899999999999886652 2221122 2222111101
Q ss_pred CC---CCChHH---HHHHHHHHHHHHHhhccccchhHHHHHHH
Q psy14360 172 DR---KDDPLA---LVVVGSIGFGILCTYSLQFYVPVAIIWAE 208 (471)
Q Consensus 172 ~~---~~~~~~---~v~~~~~~l~l~~s~pl~~~p~~~~~~~~ 208 (471)
-. ++.+.. .+++....++++.+---.+++..+.+...
T Consensus 308 F~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~y~~sR~l~am 350 (554)
T KOG1286|consen 308 FVIAIGNAGAKYLPHIVNAGILIGLLSSLNSSLYAGSRVLYAL 350 (554)
T ss_pred HHHHHhccCccccchhhhHHHHHHHHHHHHHHhHHhHHHHHHH
Confidence 00 011122 25666666666655555667777777665
No 59
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=91.79 E-value=0.34 Score=51.69 Aligned_cols=56 Identities=14% Similarity=0.107 Sum_probs=47.3
Q ss_pred ccchhhhhhhHhhhccccccchhhHHhhhcCCC-CCcccchhhhHHHHHHHHHHHHHhhh
Q psy14360 384 IQQIPLFFGTVIFAFEGIALVLPLQREMKKKKN-FNSSFGVLNMGSILIIALMLSMGFFG 442 (471)
Q Consensus 384 ~~~~~~~~g~~~faf~~~~~~~~i~~~M~~p~~-f~~~~~vl~~~~~~~~~~y~~~g~~g 442 (471)
+.++..+.....|+|.|-......-+|+|||+| .++ ....+..+++++|+.+...-
T Consensus 230 ~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~r~iP~---aii~sl~i~~vlY~lv~~~l 286 (557)
T TIGR00906 230 FTGVLSGAATCFFAFIGFDAIATTGEEVKNPQRAIPI---GIVTSLLVCFVAYFLMSAAL 286 (557)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHhHHhccCccccccH---HHHHHHHHHHHHHHHHHHHH
Confidence 345667788899999999999999999999985 676 78899999999999876543
No 60
>TIGR00909 2A0306 amino acid transporter.
Probab=90.93 E-value=0.36 Score=49.63 Aligned_cols=58 Identities=16% Similarity=0.212 Sum_probs=47.9
Q ss_pred cccchhhhhhhHhhhccccccchhhHHhhhcCC-CCCcccchhhhHHHHHHHHHHHHHhhhh
Q psy14360 383 HIQQIPLFFGTVIFAFEGIALVLPLQREMKKKK-NFNSSFGVLNMGSILIIALMLSMGFFGY 443 (471)
Q Consensus 383 ~~~~~~~~~g~~~faf~~~~~~~~i~~~M~~p~-~f~~~~~vl~~~~~~~~~~y~~~g~~gY 443 (471)
++.++..++...+|+|.|........+|+|||+ +.+| ++..+..++.++|+.......
T Consensus 193 ~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~---ai~~~~~~~~v~Yil~~~~~~ 251 (429)
T TIGR00909 193 GFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPK---AIILSLIVVTLLYVLVAAVIL 251 (429)
T ss_pred cHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccH---HHHHHHHHHHHHHHHHHHHHh
Confidence 345667778889999999999999999999986 4677 788899999999998865443
No 61
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=90.02 E-value=11 Score=38.33 Aligned_cols=139 Identities=10% Similarity=0.063 Sum_probs=65.9
Q ss_pred HHhhHhhHHHHHHhhccCcchHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHhheeeeeecccC--CCCCCCCc
Q psy14360 15 FVFVAQSSHQICLALDIDYKLHYHMAIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYILQDL--PPVSTRNY 92 (471)
Q Consensus 15 ~i~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~S~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~ 92 (471)
....||.++.+.+...+..+...++.+..++..+.+. ...|.++++..++........+...+....+. .+..+.+
T Consensus 92 ~~~gg~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-~G~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~- 169 (386)
T TIGR02358 92 IIVGAKAASLLGGRLFGEESPMLWILIVGILVTLWLL-SGPLAFVWLNNWSVWLLLIATLWLLVVVFSKADLSELWNRA- 169 (386)
T ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcCCC-
Confidence 3455777877776532222233344444444444443 24455555555555444443332222111111 1111111
Q ss_pred cccccchhHHHHHHH-HhhccceeeecchhhcccccCCCcccchhhhHHHHHHHHHHHHhhhhhhcccC
Q psy14360 93 VGHIQQIPLFFGTVI-FAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGE 160 (471)
Q Consensus 93 ~~~~~~~~~~~g~~~-faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~ 160 (471)
.+ ..+...++... +.-......+...+..|+|+|.-+ ....+..+...+-..+|...-.+.++
T Consensus 170 -~~-~s~~~~~~~~~~~~~swa~~~~DysRy~k~~~~~~~---~~~~G~~i~~~~~~~~G~~~~~a~~~ 233 (386)
T TIGR02358 170 -GD-MSFAVAVELVIAMPLSWLPLIADYTRFARNPRHVFL---GTVLGYFIGSCWMYFLGLAVTLATGQ 233 (386)
T ss_pred -CC-ccHHHHHHHHHHHHHHHHHHccchhhhcCCCcceeh---HHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 11 22222222211 101223347888888887766555 55566667777777777777666654
No 62
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=88.15 E-value=0.43 Score=48.92 Aligned_cols=63 Identities=16% Similarity=0.217 Sum_probs=52.0
Q ss_pred ccccchhhhhhhHhhhccccccchhhHHhhhcCCCCCcccchhhhHHHHHHHHHHHHHhhhhhhccC
Q psy14360 382 GHIQQIPLFFGTVIFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGE 448 (471)
Q Consensus 382 ~~~~~~~~~~g~~~faf~~~~~~~~i~~~M~~p~~f~~~~~vl~~~~~~~~~~y~~~g~~gY~~fG~ 448 (471)
..++....++...+|+|.|-.......+|+|| |+.+| .+..+..++.++|......-....++
T Consensus 185 ~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~-k~ip~---ai~~~~~~~~i~y~l~~~~~~~~~~~ 247 (426)
T PF13520_consen 185 SGWPGFLAGFSVAFFAFSGFEAIASLAEENKN-KTIPR---AIIISIIIVAIIYILFSIALLGALPD 247 (426)
T ss_dssp SSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS-HHHHH---HHHHHHHHHHHHHHHHHHHHHTTSTH
T ss_pred ccccchhhHHHHHHhhcccccccccccccccc-hhhee---ecccchhHHHHHHhhhhheeeecccc
Confidence 34555678888999999999999999999998 67887 88899999999999887665555544
No 63
>KOG1289|consensus
Probab=87.21 E-value=9.1 Score=39.99 Aligned_cols=104 Identities=12% Similarity=-0.003 Sum_probs=51.8
Q ss_pred ccchhhHHHHHHHHHHHHhheeeeeec---ccCCCCC-C------CCcccccc--ch--hHHHHHHHHhhccceeeecch
Q psy14360 55 LKYIAPISAVANLIMGLGIAAIYYYIL---QDLPPVS-T------RNYVGHIQ--QI--PLFFGTVIFAFEGIALVLPLQ 120 (471)
Q Consensus 55 l~~l~~~S~~~~~~~~~~~~~v~~~~~---~~~~~~~-~------~~~~~~~~--~~--~~~~g~~~faf~~~~~~~~i~ 120 (471)
-|.+++++.+++...++..++.++... .+.++.. + .....+|+ ++ ...+-.-+..+.|--...++.
T Consensus 196 ~r~l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~afil~f~~~~wt~sGyDa~~H~a 275 (550)
T KOG1289|consen 196 TRVLARINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGWAFILGFFNPAWTMSGYDAAAHMA 275 (550)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchHHHHHhhccceeEEeccCchHHHH
Confidence 367888888887776655544332221 1111111 1 11111222 22 223333455556667778889
Q ss_pred hhcccccC-CCcccchhhhHHHHHHHHHHHHhhhhhhcccCc
Q psy14360 121 REMKKKKN-FNSSFGVLNMGSILIIALMLSMGFFGYLKYGEN 161 (471)
Q Consensus 121 ~~m~~p~~-~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~ 161 (471)
+|-||+++ -++ .+..+..+..++=..+-+.-...-++|
T Consensus 276 EE~~nAsk~aPr---gIi~s~~i~~i~gw~~~I~i~~~i~~D 314 (550)
T KOG1289|consen 276 EETKNASKAAPR---GIISSIAIGFILGWIIIIGIAYTIPDD 314 (550)
T ss_pred HHhcchhhhccH---HHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 99999965 444 555555554444333333333344443
No 64
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=87.01 E-value=0.66 Score=47.89 Aligned_cols=60 Identities=13% Similarity=0.022 Sum_probs=49.9
Q ss_pred ccchhhhhhhHhhhccccccchhhHHhhhcCC-CCCcccchhhhHHHHHHHHHHHHHhhhhhhc
Q psy14360 384 IQQIPLFFGTVIFAFEGIALVLPLQREMKKKK-NFNSSFGVLNMGSILIIALMLSMGFFGYLKY 446 (471)
Q Consensus 384 ~~~~~~~~g~~~faf~~~~~~~~i~~~M~~p~-~f~~~~~vl~~~~~~~~~~y~~~g~~gY~~f 446 (471)
..++..++....|+|.|-......-+|+|||+ +.+| +...+...++++|+..........
T Consensus 186 ~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPr---Ai~~~~~iv~ilYil~~~~~~~~~ 246 (435)
T PRK10435 186 GHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPL---ATMLGTGLAGIIYIAATQVISGMF 246 (435)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccH---HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45667778889999999999999999999995 6888 788899999999998876554333
No 65
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=86.99 E-value=5.1 Score=40.91 Aligned_cols=170 Identities=14% Similarity=0.094 Sum_probs=90.0
Q ss_pred cccchhHHHHHHHHhhccceeeecchhhcccccC-CCcccchhhhHHHHHHHHHH-----HHhhhhhhcccCccccceee
Q psy14360 95 HIQQIPLFFGTVIFAFEGIALVLPLQREMKKKKN-FNSSFGVLNMGSILIIALML-----SMGFFGYLKYGENVKGSITL 168 (471)
Q Consensus 95 ~~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~-~~~~~~v~~~s~~~~~~~Y~-----~~g~~gY~~fG~~~~~~il~ 168 (471)
.+.++..++-+.+|||.+.-.+=.-.+|-|||+| .+| +.+.-..=..++|+ .+.+.-|-.++++. ++...
T Consensus 201 G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k~ipk---Ain~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~-SPFV~ 276 (462)
T COG1113 201 GFLGFLSALQIVMFAFGGIELVGITAAEAKDPEKAIPK---AINSVIWRILIFYVGSLFVILSLYPWNQIGEDG-SPFVT 276 (462)
T ss_pred chHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhhHHHH---HHhhhhHHHHHHHHHHHHHHheeccccccCCCC-CcHHH
Confidence 3456777888999999999988888999999976 445 44333333344443 44444444444332 22222
Q ss_pred ecCCCCCChHHHHHHHHHHHHHHHhhccccchhHHHHHHHHhhh--------cCCCChhhHHHHHHHHHHHHHHHHHHHh
Q psy14360 169 NLSDRKDDPLALVVVGSIGFGILCTYSLQFYVPVAIIWAELEEK--------YGPFKHPAFGETILRVSLVLLTCKLALV 240 (471)
Q Consensus 169 nl~~~~~~~~~~v~~~~~~l~l~~s~pl~~~p~~~~~~~~~~~~--------~~~~~~~~~~~~~~r~~~~~~~~~iA~~ 240 (471)
-+..-.-.....+.+.....+.+.+.=--+|...+++...-.++ .+++.-+ +...........++.++.+.
T Consensus 277 ~f~~iGi~~Aa~i~N~VVLtAa~S~~NSglystsRmL~~la~~g~APk~~~klsk~gVP-~~ai~~s~~~~~~~V~Lny~ 355 (462)
T COG1113 277 VFSLIGIPFAAGIMNFVVLTAALSALNSGLYSTSRMLYSLAKQGDAPKAFAKLSKRGVP-VNAILLSAVVLLLGVVLNYI 355 (462)
T ss_pred HHHHcCCcccccceeEEEeechhhcccccccccchHHHHHhhcCcccHhHhhccccCCC-HHHHHHHHHHHHHHHHHHhh
Confidence 21110001222233333333333333334455556666553221 1222222 55577778888888899999
Q ss_pred hcc--hhhhhhhhh--hhhHhhhhhHHHHhhhc
Q psy14360 241 VVG--SIGFGILCT--YSLQFYVPVAIIWAELE 269 (471)
Q Consensus 241 ip~--~slvGs~~~--~~l~fi~P~l~~l~~~~ 269 (471)
.|. |.++=+.++ ......+=.+.|+|.++
T Consensus 356 ~P~~vF~~v~s~s~~~~l~vW~~I~~s~l~~rk 388 (462)
T COG1113 356 LPEKVFELVTSSSGLGLLFVWLMILLSQLKLRK 388 (462)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 996 333332222 22333444566777763
No 66
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=85.86 E-value=1.3 Score=45.92 Aligned_cols=55 Identities=13% Similarity=0.245 Sum_probs=46.1
Q ss_pred ccchhhhhhhHhhhccccccchhhHHhhhcCCC-CCcccchhhhHHHHHHHHHHHHHhh
Q psy14360 384 IQQIPLFFGTVIFAFEGIALVLPLQREMKKKKN-FNSSFGVLNMGSILIIALMLSMGFF 441 (471)
Q Consensus 384 ~~~~~~~~g~~~faf~~~~~~~~i~~~M~~p~~-f~~~~~vl~~~~~~~~~~y~~~g~~ 441 (471)
+.++..++....|+|.|-.......+|+|||+| .+| ++..+..+++++|+.....
T Consensus 194 ~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iP~---Ai~~~~~i~~~~Y~l~~~~ 249 (445)
T PRK11357 194 FMALLAGISATSWSYTGMASICYMTGEIKNPGKTMPR---ALIGSCLLVLVLYTLLALV 249 (445)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhHHHhcCccccchH---HHHHHHHHHHHHHHHHHHH
Confidence 445667778899999999999999999999974 577 7889999999999877653
No 67
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=85.80 E-value=0.63 Score=46.62 Aligned_cols=57 Identities=26% Similarity=0.355 Sum_probs=48.6
Q ss_pred hHhhhccccccchhhHHhhhcCCCCCcccchhhhHHHHHHHHHHHHHhhhhhhccCcccc
Q psy14360 393 TVIFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKG 452 (471)
Q Consensus 393 ~~~faf~~~~~~~~i~~~M~~p~~f~~~~~vl~~~~~~~~~~y~~~g~~gY~~fG~~~~~ 452 (471)
...++|.|.........++|||++.+| ....+..+++.+|...-...-..+|.+..+
T Consensus 187 ~~~~~f~g~~i~~~~~~~~~~~~~~~k---~~~~~~~~~~~ly~~~~~~~i~~lg~~~~~ 243 (359)
T TIGR00912 187 VVTFAFGEIEIFFLLFPLLSKKKKIKK---SIIKAIIIGVLLYILTTFVSISVFGGNVTK 243 (359)
T ss_pred HhhhhhHHHHHHHHHHHHhCChhhhHH---HHHHHHHHHHHHHHHHHHHHHheecHHHhh
Confidence 567899999999999999999998888 778899999999998888888888865543
No 68
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=84.72 E-value=36 Score=35.04 Aligned_cols=196 Identities=11% Similarity=0.004 Sum_probs=97.3
Q ss_pred CcchHHHHHHHHHHHHHHHh--hccccchhhHHHHHHHHHHHHhheeeeeecccC--CCCCCCCccccccchhHHHHH-H
Q psy14360 32 DYKLHYHMAIMLAPILFTAM--IRNLKYIAPISAVANLIMGLGIAAIYYYILQDL--PPVSTRNYVGHIQQIPLFFGT-V 106 (471)
Q Consensus 32 ~~~~~~~~~i~~~~~~pl~~--~~~l~~l~~~S~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~-~ 106 (471)
..+...++++...++...+. .|-++.+...+..-....+.... +...+.. .+....+....+..+..+++. +
T Consensus 127 ~~~~~~~ili~g~l~~l~~ifG~r~l~~l~~~a~~~~~~lf~~l~---~~~~~~~~~~~~~~~~~~~~~~~fl~a~slv~ 203 (442)
T COG1457 127 GLPVWAGILIIGVLMTLVTIFGYRALHKLERIAVPLLLLLFLYLL---ALLFRSKGGLDALWVKGPTSPLSFLSALSLVI 203 (442)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHhcccccceeeccCCCcchhHHHHHHHHH
Confidence 44555666655555444444 66677777766655444333222 2222211 111111112223333333332 2
Q ss_pred HHhhccceeeecchhhcccccCCCcccchhhhHHHHHHHHHHHHhhhhhhcccCcc-ccceeeecCCCCCChHHHHHHHH
Q psy14360 107 IFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENV-KGSITLNLSDRKDDPLALVVVGS 185 (471)
Q Consensus 107 ~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~~-~~~il~nl~~~~~~~~~~v~~~~ 185 (471)
.+.-..-+....+.+-+|+|+. ++.+.....+......+-...|...-.+-|++. ...+...+ +.+...+.+.
T Consensus 204 g~~~sw~~~~aDysRy~~~~t~-~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~-----G~~g~~~~li 277 (442)
T COG1457 204 GSFASWGPYAADYSRYAPSPTP-SKAFLAAVLGFFLGTSFMMILGAALAAAAGNADSIADVMLGL-----GGFGLPAILI 277 (442)
T ss_pred HHHHhhhhhhhhhhhhcCCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhc-----ccHHHHHHHH
Confidence 2222344556778888888874 341113444455556666777888887777654 22222222 2255667777
Q ss_pred HHHHHHHhhccccchhHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHHHHHHhhcch
Q psy14360 186 IGFGILCTYSLQFYVPVAIIWAELEEKYGPFKHPAFGETILRVSLVLLTCKLALVVVGS 244 (471)
Q Consensus 186 ~~l~l~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~ip~~ 244 (471)
..++...+=-.++|...-.+.+...+ .++..+.+..... ..+++|+..|.+
T Consensus 278 l~l~~~ttN~~nlYsa~ls~~~i~~~------l~k~~~~v~~~v~--igt~la~~~~~f 328 (442)
T COG1457 278 LVLGTVTTNANNLYSAGLSFANIIPK------LSKVTRVVIAGVG--IGTLLALAGPFF 328 (442)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhhhh------hhhHHHHHHHHHH--HHHHHHHHHHHH
Confidence 77777777777777766555544433 1113332222222 556666666643
No 69
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=83.62 E-value=0.69 Score=47.09 Aligned_cols=55 Identities=16% Similarity=0.230 Sum_probs=44.8
Q ss_pred cccccchhhhhhhHhhhccccccchhhHHhhhc-CCCCCcccchhhhHHHHHHHHHHHH
Q psy14360 381 VGHIQQIPLFFGTVIFAFEGIALVLPLQREMKK-KKNFNSSFGVLNMGSILIIALMLSM 438 (471)
Q Consensus 381 ~~~~~~~~~~~g~~~faf~~~~~~~~i~~~M~~-p~~f~~~~~vl~~~~~~~~~~y~~~ 438 (471)
..++...+..+++.+++|+.|.++|++.+.+++ ++|.+| +...+..+..++|+..
T Consensus 180 ~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~---ai~~Gs~i~lv~yl~w 235 (394)
T PF03222_consen 180 PSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRK---AIIIGSLIPLVMYLLW 235 (394)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHH---HHHHHHHHHHHHHHHH
Confidence 457788889999999999999999999999984 555555 7777777777777754
No 70
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=83.34 E-value=1.9 Score=45.43 Aligned_cols=57 Identities=14% Similarity=0.169 Sum_probs=47.5
Q ss_pred ccchhhhhhhHhhhccccccchhhHHhhhcCC-CCCcccchhhhHHHHHHHHHHHHHhhhh
Q psy14360 384 IQQIPLFFGTVIFAFEGIALVLPLQREMKKKK-NFNSSFGVLNMGSILIIALMLSMGFFGY 443 (471)
Q Consensus 384 ~~~~~~~~g~~~faf~~~~~~~~i~~~M~~p~-~f~~~~~vl~~~~~~~~~~y~~~g~~gY 443 (471)
..++..++....|+|.|-.......+|+|||+ +.+| ++..+..+++++|+.....-.
T Consensus 234 ~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~r~iPr---Ai~~s~~~v~~~Y~l~~~a~~ 291 (501)
T TIGR00911 234 AGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPYRTLPI---AIIISMPIVTFIYVLTNIAYF 291 (501)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhhhHHHhcCchhhhHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 44566778889999999999999999999996 4677 788899999999998865433
No 71
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=82.90 E-value=1.4 Score=45.69 Aligned_cols=61 Identities=16% Similarity=0.198 Sum_probs=51.1
Q ss_pred cchhhhhhhHhhhccccccchhhHHhhhcCC-CCCcccchhhhHHHHHHHHHHHHHhhhhhhccC
Q psy14360 385 QQIPLFFGTVIFAFEGIALVLPLQREMKKKK-NFNSSFGVLNMGSILIIALMLSMGFFGYLKYGE 448 (471)
Q Consensus 385 ~~~~~~~g~~~faf~~~~~~~~i~~~M~~p~-~f~~~~~vl~~~~~~~~~~y~~~g~~gY~~fG~ 448 (471)
..+...+....++|.|-....+.-+|+|||+ +.+| ....+...++.+|+.....--...++
T Consensus 201 ~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~ip~---aii~~~~~~~~~y~~~~~~~~~~~~~ 262 (466)
T COG0531 201 GGILAAILLAFFAFTGFEAIATLAEEVKNPKRTIPR---AIILSLLIVLILYILGALVIVGVLPA 262 (466)
T ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHhcCccccccH---HHHHHHHHHHHHHHHHHHHHHhCccH
Confidence 3566777788999999999999999999985 5577 77788899999999988877776665
No 72
>PRK10483 tryptophan permease; Provisional
Probab=82.39 E-value=1.5 Score=44.63 Aligned_cols=52 Identities=17% Similarity=0.153 Sum_probs=42.3
Q ss_pred ccchhhhhhhHhhhccccccchhhHHhhhc-CCCCCcccchhhhHHHHHHHHHHHH
Q psy14360 384 IQQIPLFFGTVIFAFEGIALVLPLQREMKK-KKNFNSSFGVLNMGSILIIALMLSM 438 (471)
Q Consensus 384 ~~~~~~~~g~~~faf~~~~~~~~i~~~M~~-p~~f~~~~~vl~~~~~~~~~~y~~~ 438 (471)
+.....++++.+++|+-|.++|++.+.+++ ++|-+| ++..+..+..++|+..
T Consensus 191 ~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~---~I~iGs~Iplv~yl~W 243 (414)
T PRK10483 191 APYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVK---CLVYGTLMALALYTIW 243 (414)
T ss_pred HHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHH---HHHHHHHHHHHHHHHH
Confidence 445678999999999999999999999875 444444 7888888888888763
No 73
>PRK10655 potE putrescine transporter; Provisional
Probab=82.39 E-value=2.1 Score=44.23 Aligned_cols=56 Identities=9% Similarity=0.071 Sum_probs=45.8
Q ss_pred cchhhhhhhHhhhccccccchhhHHhhhcCC-CCCcccchhhhHHHHHHHHHHHHHhhhh
Q psy14360 385 QQIPLFFGTVIFAFEGIALVLPLQREMKKKK-NFNSSFGVLNMGSILIIALMLSMGFFGY 443 (471)
Q Consensus 385 ~~~~~~~g~~~faf~~~~~~~~i~~~M~~p~-~f~~~~~vl~~~~~~~~~~y~~~g~~gY 443 (471)
.++..++....|+|.|-......-+|+|||+ +.+| ++..+..++..+|+.......
T Consensus 189 ~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPr---Ai~~~~~~~~~~Y~l~~~~~~ 245 (438)
T PRK10655 189 SAVGSSIAMTLWAFLGLESACANSDAVENPERNVPI---AVLGGTLGAAVIYIVSTNVIA 245 (438)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccH---HHHHHHHHHHHHHHHHHHHHH
Confidence 3445567778999999999999999999987 6777 888999999999988665433
No 74
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=82.35 E-value=2.8 Score=43.78 Aligned_cols=61 Identities=15% Similarity=0.120 Sum_probs=50.0
Q ss_pred ccchhHHHHHHHHhhccceeeecchhhcccccC-CCcccchhhhHHHHHHHHHHHHhhhhhhccc
Q psy14360 96 IQQIPLFFGTVIFAFEGIALVLPLQREMKKKKN-FNSSFGVLNMGSILIIALMLSMGFFGYLKYG 159 (471)
Q Consensus 96 ~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~-~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG 159 (471)
+.++..++....++|.|-......-+|.||||| .+| ....+.....++|.......=...+
T Consensus 199 ~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k~IPr---a~~~~~~~~~v~y~~~~~~~~~~~~ 260 (478)
T PF00324_consen 199 FSGFFAALVFAFFAFVGFESIAILAEEAKNPRKTIPR---ATLLSVLRIGVFYVLTSYALTLAVP 260 (478)
T ss_pred hhHHHHhhhhhhcccccccccccccccCCCchhhhhh---HhhhhhhhhhhhhhhhhhhcccccC
Confidence 456777888899999999999999999999964 677 8888888888899887665544444
No 75
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=82.29 E-value=2.1 Score=44.28 Aligned_cols=56 Identities=16% Similarity=0.100 Sum_probs=45.8
Q ss_pred cccchhhhhhhHhhhccccccchhhHHhhhcCCC-CCcccchhhhHHHHHHHHHHHHHhh
Q psy14360 383 HIQQIPLFFGTVIFAFEGIALVLPLQREMKKKKN-FNSSFGVLNMGSILIIALMLSMGFF 441 (471)
Q Consensus 383 ~~~~~~~~~g~~~faf~~~~~~~~i~~~M~~p~~-f~~~~~vl~~~~~~~~~~y~~~g~~ 441 (471)
.+.++..++....|+|.|-.......+|+|||+| .+| +...+...+..+|+.....
T Consensus 179 g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPr---ai~~~~~~i~i~Yil~~~~ 235 (446)
T PRK10197 179 GFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVR---ATNSVIWRISIFYLCSIFV 235 (446)
T ss_pred cHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHH---HHHHHHHHHHHHHHHHHHH
Confidence 3456778888899999999999999999999975 666 6667888888888876554
No 76
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=82.29 E-value=62 Score=34.04 Aligned_cols=166 Identities=12% Similarity=0.074 Sum_probs=88.7
Q ss_pred ccchhHHHHHHHHhhccceeeecchhhcccccC-CCcccchhhhHHHHHHHHHHHHhh-hhhhcccCc-----------c
Q psy14360 96 IQQIPLFFGTVIFAFEGIALVLPLQREMKKKKN-FNSSFGVLNMGSILIIALMLSMGF-FGYLKYGEN-----------V 162 (471)
Q Consensus 96 ~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~-~~~~~~v~~~s~~~~~~~Y~~~g~-~gY~~fG~~-----------~ 162 (471)
+.++...+-+..|+|.|.-.+---..|-+||+| .+| +..-..-=..++|+..-+ .|-+.-.+| .
T Consensus 233 f~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K~iPk---Aik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~ 309 (541)
T COG0833 233 FKGFCSVFVIAAFSFSGTELVGLAAGESENPRKSIPK---AIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVA 309 (541)
T ss_pred hHHHHHHHhhheeeeeceeeeeeeecccCCchhhhHH---HHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCcc
Confidence 344555556688999999999889999999965 666 555555555666654322 222222222 1
Q ss_pred ccceeeecCCCCCChHHHHHHHHHHHHHHHhhccccchhHHHHHHHHhh--------hcCCCChhhHHHHHHHHHHHHHH
Q psy14360 163 KGSITLNLSDRKDDPLALVVVGSIGFGILCTYSLQFYVPVAIIWAELEE--------KYGPFKHPAFGETILRVSLVLLT 234 (471)
Q Consensus 163 ~~~il~nl~~~~~~~~~~v~~~~~~l~l~~s~pl~~~p~~~~~~~~~~~--------~~~~~~~~~~~~~~~r~~~~~~~ 234 (471)
+++...-+.+..-.....+.+..+..+++.+-==.+|...+.++..-.+ +.+++..+ +....++..+-+++
T Consensus 310 ~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS~lYasSR~L~sLA~~g~APk~f~~~~r~GvP-~~al~vt~~fg~la 388 (541)
T COG0833 310 ASPFVIAIKNAGIPVAASIMNAVILTSVLSAANSGLYASSRMLYSLAKQGKAPKIFAKVDRRGVP-LVALLVTLLFGLLA 388 (541)
T ss_pred CCChhHhHHhcCCccchHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCCCchHHHhhCCCCCc-hHHHHHHHHHHHHH
Confidence 1222222211111234556677777777666555667788888775433 23333333 44444444444444
Q ss_pred HHHHHhhcc--h-----hhhhhhhhhhhHhhhhhHHHHhhh
Q psy14360 235 CKLALVVVG--S-----IGFGILCTYSLQFYVPVAIIWAEL 268 (471)
Q Consensus 235 ~~iA~~ip~--~-----slvGs~~~~~l~fi~P~l~~l~~~ 268 (471)
.+-+.. .. . ++.|- +..++.+-=++-|++.+
T Consensus 389 fl~~~~-~~~~vf~wL~~isg~--s~~i~W~~I~~shirFR 426 (541)
T COG0833 389 FLNSSF-KETTVFNWLLNISGL--SGFIAWGSICLSHIRFR 426 (541)
T ss_pred HHHhcc-CcchHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 444443 33 2 44432 23334444455666655
No 77
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=81.87 E-value=1.1 Score=45.77 Aligned_cols=65 Identities=11% Similarity=0.267 Sum_probs=45.3
Q ss_pred ccchhhhhhhHhhhccccccchhhHHhhhcC----C-CCCcccchhhhHHHHHHHHHHHHHhhhhhhccC
Q psy14360 384 IQQIPLFFGTVIFAFEGIALVLPLQREMKKK----K-NFNSSFGVLNMGSILIIALMLSMGFFGYLKYGE 448 (471)
Q Consensus 384 ~~~~~~~~g~~~faf~~~~~~~~i~~~M~~p----~-~f~~~~~vl~~~~~~~~~~y~~~g~~gY~~fG~ 448 (471)
+.+...++++.++||.+|+.+++...+.|+. + +.+|.++++..+..+..++|+..-...-+..+.
T Consensus 185 ~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~ 254 (397)
T TIGR00814 185 LKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVATVMFFVFSCVLSLSP 254 (397)
T ss_pred HHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence 4567899999999999999999998655422 1 123333477788888887777665555555543
No 78
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=81.81 E-value=1.1 Score=45.57 Aligned_cols=55 Identities=11% Similarity=0.028 Sum_probs=43.0
Q ss_pred chhhhhhhHhhhccccccchhhHHhhhc-CCCCCcccchhhhHHHHHHHHHHHHHhhhh
Q psy14360 386 QIPLFFGTVIFAFEGIALVLPLQREMKK-KKNFNSSFGVLNMGSILIIALMLSMGFFGY 443 (471)
Q Consensus 386 ~~~~~~g~~~faf~~~~~~~~i~~~M~~-p~~f~~~~~vl~~~~~~~~~~y~~~g~~gY 443 (471)
.....+++..++|+-|.++|++.+.+++ ++|-+| +...+..+..++|+..=....
T Consensus 182 ~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k---~i~~Gs~i~li~yl~W~~~~l 237 (403)
T PRK15132 182 LALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRW---VFIIGSAIPLVAYIFWQLATL 237 (403)
T ss_pred HHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 3788999999999999999999999975 445555 777888888888875544433
No 79
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=81.17 E-value=2.3 Score=44.92 Aligned_cols=47 Identities=19% Similarity=0.198 Sum_probs=37.7
Q ss_pred hhhhHhhhccccccchhhHHhhhcCC-CCCcccchhhhHHHHHHHHHHHHH
Q psy14360 390 FFGTVIFAFEGIALVLPLQREMKKKK-NFNSSFGVLNMGSILIIALMLSMG 439 (471)
Q Consensus 390 ~~g~~~faf~~~~~~~~i~~~M~~p~-~f~~~~~vl~~~~~~~~~~y~~~g 439 (471)
.+-..+|+|.|-......-+|||||+ +++| ++..+..++..+|....
T Consensus 199 ~~~~~~faf~G~E~~a~~a~E~knP~r~~Pr---Ai~~~~i~~~~l~~l~~ 246 (507)
T TIGR00910 199 VFVAFIGAYMGVEASASHINELENPGRDYPL---AMILLMIAAICLDAIGG 246 (507)
T ss_pred HHHHHHHHHhcHHHHHHHHHHccCCcccccH---HHHHHHHHHHHHHHHHH
Confidence 33346899999999999999999996 5888 77778887888886533
No 80
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=80.43 E-value=2 Score=44.43 Aligned_cols=52 Identities=17% Similarity=0.096 Sum_probs=41.2
Q ss_pred chhhhhhhHhhhccccccchhhHHhhhcCC-CCCcccchhhhHHHHHHHHHHHHHh
Q psy14360 386 QIPLFFGTVIFAFEGIALVLPLQREMKKKK-NFNSSFGVLNMGSILIIALMLSMGF 440 (471)
Q Consensus 386 ~~~~~~g~~~faf~~~~~~~~i~~~M~~p~-~f~~~~~vl~~~~~~~~~~y~~~g~ 440 (471)
++..++....|+|.|.......-+|+|||+ +.+| ++..+..++..+|+..-.
T Consensus 192 ~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~ipr---ai~~s~~~~~~~~~~~~~ 244 (442)
T TIGR00908 192 GVFAAIPFAIWFFLAVEGVAMAAEETKNPKRDIPR---GLIGAILTLLALAAGILV 244 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCH---HHHHHHHHHHHHHHHHHH
Confidence 445666667899999999999999999996 4677 777788877787876643
No 81
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=79.97 E-value=3.2 Score=42.98 Aligned_cols=56 Identities=13% Similarity=0.070 Sum_probs=46.1
Q ss_pred cchhhhhhhHhhhccccccchhhHHhhhcCC-CCCcccchhhhHHHHHHHHHHHHHhhhh
Q psy14360 385 QQIPLFFGTVIFAFEGIALVLPLQREMKKKK-NFNSSFGVLNMGSILIIALMLSMGFFGY 443 (471)
Q Consensus 385 ~~~~~~~g~~~faf~~~~~~~~i~~~M~~p~-~f~~~~~vl~~~~~~~~~~y~~~g~~gY 443 (471)
..+..++....|+|.|-......-+|+|||+ +.+| ++..+..+++++|+...+.--
T Consensus 191 ~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iPr---ai~~s~~i~~v~Y~l~~~~~~ 247 (445)
T PRK10644 191 GAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPI---ATIGGVLIAAVCYVLSSTAIM 247 (445)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchhH---HHHHHHHHHHHHHHHHHHHHH
Confidence 3444566678999999999999999999996 5777 788899999999988876533
No 82
>PRK10249 phenylalanine transporter; Provisional
Probab=79.44 E-value=2.4 Score=44.03 Aligned_cols=57 Identities=14% Similarity=0.217 Sum_probs=46.0
Q ss_pred ccccchhhhhhhHhhhccccccchhhHHhhhcCCC-CCcccchhhhHHHHHHHHHHHHHhh
Q psy14360 382 GHIQQIPLFFGTVIFAFEGIALVLPLQREMKKKKN-FNSSFGVLNMGSILIIALMLSMGFF 441 (471)
Q Consensus 382 ~~~~~~~~~~g~~~faf~~~~~~~~i~~~M~~p~~-f~~~~~vl~~~~~~~~~~y~~~g~~ 441 (471)
.++.++..++....|+|.|-......-+|+|||+| .+| ++..+...+..+|+.....
T Consensus 206 ~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~k~iPr---ai~~~~~~~~~~y~~~~~~ 263 (458)
T PRK10249 206 TGWNGLILSLAVIMFSFGGLELIGITAAEARDPEKSIPK---AVNQVVYRILLFYIGSLVV 263 (458)
T ss_pred CcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHhhHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 34556678888899999999999999999999875 566 7777888888888765443
No 83
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=77.05 E-value=3.5 Score=43.07 Aligned_cols=58 Identities=12% Similarity=0.204 Sum_probs=47.5
Q ss_pred ccchhhhhhhHhhhccccccchhhHHhhhcCCCCCcccchhhhHHHHHHHHHHHHHhhhhh
Q psy14360 384 IQQIPLFFGTVIFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYL 444 (471)
Q Consensus 384 ~~~~~~~~g~~~faf~~~~~~~~i~~~M~~p~~f~~~~~vl~~~~~~~~~~y~~~g~~gY~ 444 (471)
+..+..++....|+|.|-......-+|+||+|+.+| .+..+..+++.+|+........
T Consensus 198 ~~~~~~~~~~~~~af~G~e~~~~~a~E~k~~r~iPr---ai~~~~~i~~~~Yil~~~~~~~ 255 (473)
T TIGR00905 198 FSQVKNTMLVTLWVFIGIEGAVVSSGRAKNKSDVGK---ATVLGTLGALVIYILITLLSLG 255 (473)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhccccchH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 345566777799999999999999999999777887 7888999999999887665433
No 84
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=77.01 E-value=32 Score=35.49 Aligned_cols=49 Identities=20% Similarity=0.025 Sum_probs=34.7
Q ss_pred ccceeeecchhhcccccCCCcccchhhhHHHHHHHHHHHHhhhhhhc----ccCcc
Q psy14360 111 EGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLK----YGENV 162 (471)
Q Consensus 111 ~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~----fG~~~ 162 (471)
..-.+.+...+.+|+|++-.+ ....++.........+|..+-.. +|+..
T Consensus 222 s~~~~~~DysRy~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~ 274 (442)
T TIGR00800 222 TWATNAPDFTRFGKSKKTAIW---GQFLALPGGFTLTCFFGILGAAAAYAAYGEPY 274 (442)
T ss_pred HHHcCchhhhhhcCCccchHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 345678889999998876655 56666777777777777777665 77543
No 85
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=76.57 E-value=4.5 Score=41.91 Aligned_cols=55 Identities=22% Similarity=0.213 Sum_probs=43.7
Q ss_pred ccchhhhhhhHhhhccccccchhhHHhhhcCC-CCCcccchhhhHHHHHHHHHHHHHhh
Q psy14360 384 IQQIPLFFGTVIFAFEGIALVLPLQREMKKKK-NFNSSFGVLNMGSILIIALMLSMGFF 441 (471)
Q Consensus 384 ~~~~~~~~g~~~faf~~~~~~~~i~~~M~~p~-~f~~~~~vl~~~~~~~~~~y~~~g~~ 441 (471)
+.++..++....|+|.|-.......+|+|||+ +.+| +...+...+..+|+.....
T Consensus 200 ~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~r~iPr---Ai~~~~~~~~~~y~l~~~~ 255 (452)
T TIGR01773 200 IGAVLLAILVTMFSFMGTEIVTIAAAESSNPIKSITR---ATNSVIWRIIVFYLGSIFI 255 (452)
T ss_pred HHHHHHHHHHHHHHhccHHHHhHHHHhhcChhhHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 34567788889999999999999999999997 5666 6666677777888875443
No 86
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=75.03 E-value=2.6 Score=43.90 Aligned_cols=60 Identities=17% Similarity=0.254 Sum_probs=49.3
Q ss_pred cchhhhhhhHhhhccccccchhhHHhhhcCCCCCcccchhhhHHHHHHHHHHHHHhhhhhhcc
Q psy14360 385 QQIPLFFGTVIFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYG 447 (471)
Q Consensus 385 ~~~~~~~g~~~faf~~~~~~~~i~~~M~~p~~f~~~~~vl~~~~~~~~~~y~~~g~~gY~~fG 447 (471)
..+..++....|+|.|-.......+|+||||+.+| ....+...++.+|+...+..+...+
T Consensus 195 ~~~~~~~~~~~~~f~G~e~~~~~a~e~k~~k~ip~---ai~~~~~~v~~lY~l~~~~~~g~~~ 254 (468)
T TIGR03810 195 TQVKNMMLVTVWVFIGIEGASMLSARAEKRSDVGK---ATVIGLIGVLAIYVLVSVLSYGIMT 254 (468)
T ss_pred HHHHHHHHHHHHHHHhHhHHhhhHhhccCcccchH---HHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 34456777899999999999999999999888888 7888999999999988876665444
No 87
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=75.01 E-value=6 Score=38.87 Aligned_cols=115 Identities=17% Similarity=0.171 Sum_probs=69.3
Q ss_pred HHHHHHHHhhccccchhhHHHHHHHHHHHHhheeeeeecccCCCCCCC-Cc-cccccchhHHHHHHHHhhccceeeecch
Q psy14360 43 LAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYILQDLPPVSTR-NY-VGHIQQIPLFFGTVIFAFEGIALVLPLQ 120 (471)
Q Consensus 43 ~~~~~pl~~~~~l~~l~~~S~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~-~~~~~~~~~~~g~~~faf~~~~~~~~i~ 120 (471)
..+..-..-.+.++.+++.+.+-....+.....+......+. ++++. |. ..++.+.....-...+.|.+.....-+.
T Consensus 120 ~ll~~~y~a~~G~e~i~R~~~~~~~~~~i~~~~i~~~~~~~~-~~~~l~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~ 198 (320)
T PF03845_consen 120 FLLVAAYAARKGIEVIARVAEILFPIFLILLLLILLLSIPNI-DWDNLLPVLESGIKPILKGSLVISFPFGGIEILLFLF 198 (320)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CHHHeeCcccCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455777888887555544444443333333333322 22221 11 1234445555555667777777777788
Q ss_pred hhcccccCCCcccchhhhHHHHHHHHHHHHhhhhhhcccCc
Q psy14360 121 REMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGEN 161 (471)
Q Consensus 121 ~~m~~p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~ 161 (471)
..+|||+|..| ....+......+|...-+..-..||.+
T Consensus 199 p~~~~~~~~~k---~~~~~~~~~~~~~~~~~~~~i~vfG~~ 236 (320)
T PF03845_consen 199 PFVKDKKKLKK---SLLIAILISGLFLLFIIFITIGVFGPE 236 (320)
T ss_pred HHcCCchHHHH---HHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 88899988877 888888888888887777777777754
No 88
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=74.08 E-value=5.3 Score=41.71 Aligned_cols=64 Identities=14% Similarity=0.099 Sum_probs=51.1
Q ss_pred ccchhhhhhhHhhhccccccchhhHHhhhcCC-CCCcccchhhhHHHHHHHHHHHHHhhhhhhccCcc
Q psy14360 384 IQQIPLFFGTVIFAFEGIALVLPLQREMKKKK-NFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENV 450 (471)
Q Consensus 384 ~~~~~~~~g~~~faf~~~~~~~~i~~~M~~p~-~f~~~~~vl~~~~~~~~~~y~~~g~~gY~~fG~~~ 450 (471)
+.++..++....++|.|-......-+|.|||+ .-+| ....+...+.++|+......=...|.+.
T Consensus 199 ~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k~IPr---a~~~~~~~~~v~y~~~~~~~~~~~~~~~ 263 (478)
T PF00324_consen 199 FSGFFAALVFAFFAFVGFESIAILAEEAKNPRKTIPR---ATLLSVLRIGVFYVLTSYALTLAVPYDN 263 (478)
T ss_pred hhHHHHhhhhhhcccccccccccccccCCCchhhhhh---HhhhhhhhhhhhhhhhhhhcccccCccc
Confidence 66788889999999999999999999999997 4555 6778888888899877665444555444
No 89
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=73.98 E-value=7.6 Score=40.83 Aligned_cols=51 Identities=25% Similarity=0.271 Sum_probs=41.9
Q ss_pred hhhhhhhHhhhccccccchhhHHhhhcCC-CCCcccchhhhHHHHHHHHHHHHHh
Q psy14360 387 IPLFFGTVIFAFEGIALVLPLQREMKKKK-NFNSSFGVLNMGSILIIALMLSMGF 440 (471)
Q Consensus 387 ~~~~~g~~~faf~~~~~~~~i~~~M~~p~-~f~~~~~vl~~~~~~~~~~y~~~g~ 440 (471)
+..++....|+|.|........+|+|||+ +.+| +...+...+..+|+....
T Consensus 213 ~~~~~~~~~~~f~G~e~~~~~a~E~~~p~~~~p~---ai~~~~~~~~~~y~l~~~ 264 (496)
T PRK15238 213 VLSFVVFAIFAYGGIEAVGGLVDKTENPEKNFPK---GIIIAAIVISIGYSLAIF 264 (496)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhccCCCccccH---HHHHHHHHHHHHHHHHHH
Confidence 44556667899999999999999999987 5777 778888888888887543
No 90
>KOG1286|consensus
Probab=73.65 E-value=25 Score=37.42 Aligned_cols=54 Identities=17% Similarity=0.259 Sum_probs=46.9
Q ss_pred ccchhhhhhhHhhhccccccchhhHHhhhcCCC-CCcccchhhhHHHHHHHHHHHHHh
Q psy14360 384 IQQIPLFFGTVIFAFEGIALVLPLQREMKKKKN-FNSSFGVLNMGSILIIALMLSMGF 440 (471)
Q Consensus 384 ~~~~~~~~g~~~faf~~~~~~~~i~~~M~~p~~-f~~~~~vl~~~~~~~~~~y~~~g~ 440 (471)
+.++...+.+..|+|.|...+-..-+|-|||+| -|+ +...++..++.+|+...+
T Consensus 231 f~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~k~IP~---ai~~s~~ri~~~Yi~~~~ 285 (554)
T KOG1286|consen 231 FKGVLSGAATAFFSFIGFELVATTAEEAKNPRKAIPK---AIKQSLLRILLFYILSSI 285 (554)
T ss_pred cceeeHHHHHHHHHHhhHHHHHHHHHhccCCcccccH---HHHHHHHHHHHHHHHHHH
Confidence 677888899999999999999999999999874 444 788899999999998875
No 91
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=73.57 E-value=3 Score=41.01 Aligned_cols=114 Identities=18% Similarity=0.160 Sum_probs=72.1
Q ss_pred hhcccCCcchhHHHHHHHHHHHHhhheEEEEeccCCCCCccCcc-cccccchhhhhhhHhhhccccccchhhHHhhhcCC
Q psy14360 337 TAMIRNLKYIAPISAVANLIMGLGIAAIYYYILQDLPPVSTRNY-VGHIQQIPLFFGTVIFAFEGIALVLPLQREMKKKK 415 (471)
Q Consensus 337 l~~~~~l~~ls~~S~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~faf~~~~~~~~i~~~M~~p~ 415 (471)
..-.+.++.++-.+.+-....+.....+......+.....-.|. ..++.+...+.-...+.|.+.....-+...+|||+
T Consensus 126 y~a~~G~e~i~R~~~~~~~~~~i~~~~i~~~~~~~~~~~~l~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~ 205 (320)
T PF03845_consen 126 YAARKGIEVIARVAEILFPIFLILLLLILLLSIPNIDWDNLLPVLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDKK 205 (320)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHeeCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 34455666666644444444443333333333333221111222 23556666676667888889888888999999998
Q ss_pred CCCcccchhhhHHHHHHHHHHHHHhhhhhhccCccccc
Q psy14360 416 NFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGS 453 (471)
Q Consensus 416 ~f~~~~~vl~~~~~~~~~~y~~~g~~gY~~fG~~~~~~ 453 (471)
+..| ....+......+|...-...-..||.+..+.
T Consensus 206 ~~~k---~~~~~~~~~~~~~~~~~~~~i~vfG~~~~~~ 240 (320)
T PF03845_consen 206 KLKK---SLLIAILISGLFLLFIIFITIGVFGPELAKK 240 (320)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHhcCHHHHhc
Confidence 8877 7778888888888887777888888654433
No 92
>PRK11375 allantoin permease; Provisional
Probab=72.07 E-value=1.1e+02 Score=32.20 Aligned_cols=91 Identities=11% Similarity=-0.011 Sum_probs=42.6
Q ss_pred ceeeecchhhcccccCCCcccchhhhHHHHHHHHHHHHhhhh----hhcccCccccc--eeeecCCCCCChHHHHHHHHH
Q psy14360 113 IALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFG----YLKYGENVKGS--ITLNLSDRKDDPLALVVVGSI 186 (471)
Q Consensus 113 ~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~Y~~~g~~g----Y~~fG~~~~~~--il~nl~~~~~~~~~~v~~~~~ 186 (471)
-.+.+...+-.|+|++-.+ ....+..+...+...+|++. ...||+...++ ++.+..+ .....++-+.+
T Consensus 244 ~~~~~D~tRy~k~~~~~~~---~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp~~i~~~~~~---~~~~~~a~l~~ 317 (484)
T PRK11375 244 AVSASDFTQNAHSFRAQAL---GQTLGLVVAYILFAVASVCIIAGASIHYGADTWNVLDIVQRWDS---LFASFFAVLVI 317 (484)
T ss_pred HccccchhcccCChhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHhcc---hHHHHHHHHHH
Confidence 4478888888888765444 33334444444443334332 34556543222 1111111 12223334444
Q ss_pred HHHHHHh-hccccchhHHHHHHHH
Q psy14360 187 GFGILCT-YSLQFYVPVAIIWAEL 209 (471)
Q Consensus 187 ~l~l~~s-~pl~~~p~~~~~~~~~ 209 (471)
.++.+.+ ..-+.++..-.+.+.+
T Consensus 318 v~a~~~tN~~~N~ys~~~~l~~l~ 341 (484)
T PRK11375 318 LMTTISTNATGNIIPAGYQIAALA 341 (484)
T ss_pred HHHHHHHHHHhhcccHHHHHHHhC
Confidence 4444444 2346666665555444
No 93
>PRK10238 aromatic amino acid transporter; Provisional
Probab=71.63 E-value=4.8 Score=41.85 Aligned_cols=51 Identities=16% Similarity=0.279 Sum_probs=39.2
Q ss_pred cchhhhhhhHhhhccccccchhhHHhhhcCCC-CCcccchhhhHHHHHHHHHHHH
Q psy14360 385 QQIPLFFGTVIFAFEGIALVLPLQREMKKKKN-FNSSFGVLNMGSILIIALMLSM 438 (471)
Q Consensus 385 ~~~~~~~g~~~faf~~~~~~~~i~~~M~~p~~-f~~~~~vl~~~~~~~~~~y~~~ 438 (471)
..+..+++...|+|.|-.......+|+|||+| .|| +...+...+.+.|+..
T Consensus 200 ~~~~~~~~~~~~af~G~e~~~~~aeE~knP~r~iPr---Ai~~~~~~i~~~y~~~ 251 (456)
T PRK10238 200 TGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPK---ATNQVIYRILIFYIGS 251 (456)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHhhcChhhHHHH---HHHHHHHHHHHHHHHH
Confidence 34446677899999999999999999999974 676 6666666666666543
No 94
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=71.32 E-value=6.2 Score=41.20 Aligned_cols=54 Identities=19% Similarity=0.214 Sum_probs=44.5
Q ss_pred ccchhhhhhhHhhhccccccchhhHHhhhcCC-CCCcccchhhhHHHHHHHHHHHHHh
Q psy14360 384 IQQIPLFFGTVIFAFEGIALVLPLQREMKKKK-NFNSSFGVLNMGSILIIALMLSMGF 440 (471)
Q Consensus 384 ~~~~~~~~g~~~faf~~~~~~~~i~~~M~~p~-~f~~~~~vl~~~~~~~~~~y~~~g~ 440 (471)
+.++..++....|+|.|-......-+|+|||+ +.+| ++..+...+..+|+....
T Consensus 196 ~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~iPr---ai~~~~~~~~~~Y~l~~~ 250 (478)
T TIGR00913 196 FKGVCSVFVTAAFSFGGTELVALTAGEAANPRKSIPR---AAKRTFWRILVFYILTLF 250 (478)
T ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHhhcChhhHHHH---HHHHHHHHHHHHHHHHHH
Confidence 34556677778999999999999999999986 4666 778888889999998654
No 95
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=71.31 E-value=7.6 Score=40.55 Aligned_cols=56 Identities=9% Similarity=-0.117 Sum_probs=39.3
Q ss_pred hhhhhHhhhccccccchhhHHhhhcCCC-CCcccchhhhHHHHHHHHHHHHHhhhhhhcc
Q psy14360 389 LFFGTVIFAFEGIALVLPLQREMKKKKN-FNSSFGVLNMGSILIIALMLSMGFFGYLKYG 447 (471)
Q Consensus 389 ~~~g~~~faf~~~~~~~~i~~~M~~p~~-f~~~~~vl~~~~~~~~~~y~~~g~~gY~~fG 447 (471)
.+.-...|+|.|-......-+|+|||+| .|| .+..+..+++.+|..+-+......+
T Consensus 217 ~~~~~~~~~f~G~e~~~~~aeE~knP~r~iPr---ai~~s~~i~~~~~~~~~~~~~~~~~ 273 (475)
T TIGR03428 217 VSGLMAAYVMVGFGSAGELSEETKNPRRVAPR---TILTALSVSALGGGLMILGALMAAP 273 (475)
T ss_pred HHHHHHHHHhcCcchHHHHHHHhcCcchhhhH---HHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 3444578999999999999999999974 566 6677777766655554443333333
No 96
>PRK09664 tryptophan permease TnaB; Provisional
Probab=71.27 E-value=4.5 Score=41.33 Aligned_cols=48 Identities=19% Similarity=0.178 Sum_probs=36.4
Q ss_pred chhhhhhhHhhhccccccchhhHHhhhc-CCCCCcccchhhhHHHHHHHHHH
Q psy14360 386 QIPLFFGTVIFAFEGIALVLPLQREMKK-KKNFNSSFGVLNMGSILIIALML 436 (471)
Q Consensus 386 ~~~~~~g~~~faf~~~~~~~~i~~~M~~-p~~f~~~~~vl~~~~~~~~~~y~ 436 (471)
....++++..++|+.|+++|++.+.+++ +++-+| +...+..+..++|+
T Consensus 194 ~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~k---aIl~Gs~IpLviY~ 242 (415)
T PRK09664 194 YIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIK---SVVFGSLLALVIYL 242 (415)
T ss_pred HHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHH---HHHHHHHHHHHHHH
Confidence 4677899999999999999999999875 344444 55566666666664
No 97
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=68.80 E-value=3.3 Score=43.24 Aligned_cols=56 Identities=25% Similarity=0.234 Sum_probs=43.4
Q ss_pred ccchhhhhhhHhhhccccccchhhHHhhhcCCC-CCcccchhhhHHHHHHHHHHHHHhhh
Q psy14360 384 IQQIPLFFGTVIFAFEGIALVLPLQREMKKKKN-FNSSFGVLNMGSILIIALMLSMGFFG 442 (471)
Q Consensus 384 ~~~~~~~~g~~~faf~~~~~~~~i~~~M~~p~~-f~~~~~vl~~~~~~~~~~y~~~g~~g 442 (471)
+.++..++....|+|.|-......-+|+|||+| .+| ++..+...+..+|+.....-
T Consensus 210 ~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~iPr---ai~~~~~~~~~~y~l~~~~~ 266 (469)
T PRK11049 210 LSGFFAGFQIAVFAFVGIELVGTTAAETKDPEKSLPR---AINSIPIRIIMFYVFALIVI 266 (469)
T ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHhhHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 445678888899999999999999999999975 566 56556666677777655443
No 98
>TIGR00930 2a30 K-Cl cotransporter.
Probab=68.41 E-value=12 Score=42.69 Aligned_cols=51 Identities=12% Similarity=0.133 Sum_probs=43.8
Q ss_pred hhhhhhhHhhhccccccchhhHHhhhcCCC-CCcccchhhhHHHHHHHHHHHHHh
Q psy14360 387 IPLFFGTVIFAFEGIALVLPLQREMKKKKN-FNSSFGVLNMGSILIIALMLSMGF 440 (471)
Q Consensus 387 ~~~~~g~~~faf~~~~~~~~i~~~M~~p~~-f~~~~~vl~~~~~~~~~~y~~~g~ 440 (471)
+...+|++.+||.|......+-.|+|||+| .++ ....+..+++++|+.+.+
T Consensus 282 f~~~~ai~F~A~tGi~agan~sgElKnP~r~IPr---atl~ai~i~~vlYllv~~ 333 (953)
T TIGR00930 282 FFSLFGIFFPSVTGILAGANISGDLKDPQKAIPK---GTLLAILTTTVVYLGSVV 333 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccChhhhhHH---HHHHHHHHHHHHHHHHHH
Confidence 667778888899999999999999999974 666 777899999999999875
No 99
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=67.58 E-value=5.7 Score=41.47 Aligned_cols=52 Identities=4% Similarity=0.142 Sum_probs=41.2
Q ss_pred hHhhhccccccchhhHHhhhcCC-CCCcccchhhhHHHHHHHHHHHHHhhhhhhcc
Q psy14360 393 TVIFAFEGIALVLPLQREMKKKK-NFNSSFGVLNMGSILIIALMLSMGFFGYLKYG 447 (471)
Q Consensus 393 ~~~faf~~~~~~~~i~~~M~~p~-~f~~~~~vl~~~~~~~~~~y~~~g~~gY~~fG 447 (471)
...|+|.|-......-+|+|||+ +.+| +...+..++..+|+...+.-...-+
T Consensus 202 ~~~~af~G~e~~~~~a~E~knP~r~iPr---Ai~~~~~~~~~~y~l~~~~~~~~~~ 254 (474)
T TIGR03813 202 SIFLFYAGMEMNAVHVKDVDNPDKNYPI---AILIAALGTVLIFVLGTLAIAFIIP 254 (474)
T ss_pred HHHHHHhchhHhHHHHHhccCcccchhH---HHHHHHHHHHHHHHHHHHHHHhccC
Confidence 35789999999999999999986 5777 7888999999999876554333333
No 100
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=67.50 E-value=1.2e+02 Score=31.68 Aligned_cols=38 Identities=8% Similarity=0.128 Sum_probs=23.2
Q ss_pred cchHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHH
Q psy14360 33 YKLHYHMAIMLAPILFTAMIRNLKYIAPISAVANLIMG 70 (471)
Q Consensus 33 ~~~~~~~~i~~~~~~pl~~~~~l~~l~~~S~~~~~~~~ 70 (471)
++...-+++..++..-.+...-++...++..+=.+..+
T Consensus 156 i~~~~~iii~~~iv~iYt~~GGl~av~~TD~iQ~~i~~ 193 (483)
T PRK09442 156 ISYETGLLIFGITVALYTAFGGFRAVVLTDALQGIVML 193 (483)
T ss_pred CCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 44444445555555667777778877777765544433
No 101
>KOG1287|consensus
Probab=67.00 E-value=22 Score=36.85 Aligned_cols=58 Identities=17% Similarity=0.312 Sum_probs=48.3
Q ss_pred cccchhhhhhhHhhhccccccchhhHHhhhcCC-CCCcccchhhhHHHHHHHHHHHHHhhhh
Q psy14360 383 HIQQIPLFFGTVIFAFEGIALVLPLQREMKKKK-NFNSSFGVLNMGSILIIALMLSMGFFGY 443 (471)
Q Consensus 383 ~~~~~~~~~g~~~faf~~~~~~~~i~~~M~~p~-~f~~~~~vl~~~~~~~~~~y~~~g~~gY 443 (471)
+..++..++=.-.|+|.|=..+=.+-+|+|||+ ..|+ +...++.+++++|+..=+..+
T Consensus 202 ~~g~i~lafysglfa~~GWd~lN~vteEiknP~ktLP~---Ai~isi~lvt~iYil~NvAy~ 260 (479)
T KOG1287|consen 202 DVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPRRTLPR---AILISIPLVTVIYVLVNVAYF 260 (479)
T ss_pred chHHHHHHHHHhhhcccCchhhccchHhhcCccccchH---HHHHhhHHHHHHHHHhHhhee
Confidence 445577888888999999999999999999996 4666 888999999999998866443
No 102
>PRK11387 S-methylmethionine transporter; Provisional
Probab=66.42 E-value=4.3 Score=42.38 Aligned_cols=54 Identities=15% Similarity=0.170 Sum_probs=43.4
Q ss_pred chhhhhhhHhhhccccccchhhHHhhhcCCC-CCcccchhhhHHHHHHHHHHHHHhhh
Q psy14360 386 QIPLFFGTVIFAFEGIALVLPLQREMKKKKN-FNSSFGVLNMGSILIIALMLSMGFFG 442 (471)
Q Consensus 386 ~~~~~~g~~~faf~~~~~~~~i~~~M~~p~~-f~~~~~vl~~~~~~~~~~y~~~g~~g 442 (471)
++..++....|+|.|-......-+|+|||+| .+| ++..+...+..+|+......
T Consensus 207 ~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iPr---Ai~~~~~~~~~~y~~~~~~~ 261 (471)
T PRK11387 207 PILMTMVAVNFAFSGTELIGIAAGETENPAKVIPV---AIRTTIARLVIFFVGTVLVL 261 (471)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHhcChhhHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 3456666789999999999999999999975 666 67788888888888776543
No 103
>PRK15049 L-asparagine permease; Provisional
Probab=66.00 E-value=6.8 Score=41.25 Aligned_cols=55 Identities=18% Similarity=0.170 Sum_probs=41.9
Q ss_pred hhhhhHhhhccccccchhhHHhhhcCCC-CCcccchhhhHHHHHHHHHHHHHhhhhhhc
Q psy14360 389 LFFGTVIFAFEGIALVLPLQREMKKKKN-FNSSFGVLNMGSILIIALMLSMGFFGYLKY 446 (471)
Q Consensus 389 ~~~g~~~faf~~~~~~~~i~~~M~~p~~-f~~~~~vl~~~~~~~~~~y~~~g~~gY~~f 446 (471)
.++...+|+|.|-......-+|+|||+| .+| ++..+...+.++|+..........
T Consensus 224 ~~~~~~~faf~G~e~i~~~aeE~knP~r~iPr---Ai~~~~~~i~~~yi~~~~~~~~~~ 279 (499)
T PRK15049 224 VLIQGVVFAFASIEMVGTAAGECKDPQTMVPK---AINSVIWRIGLFYVGSVVLLVMLL 279 (499)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhcChhhHHHH---HHHHHHHHHHHHHHHHHHHHheec
Confidence 4445689999999999999999999975 666 677777777787877655443333
No 104
>PRK10580 proY putative proline-specific permease; Provisional
Probab=65.07 E-value=5 Score=41.68 Aligned_cols=54 Identities=19% Similarity=0.290 Sum_probs=41.5
Q ss_pred ccchhhhhhhHhhhccccccchhhHHhhhcCCC-CCcccchhhhHHHHHHHHHHHHHh
Q psy14360 384 IQQIPLFFGTVIFAFEGIALVLPLQREMKKKKN-FNSSFGVLNMGSILIIALMLSMGF 440 (471)
Q Consensus 384 ~~~~~~~~g~~~faf~~~~~~~~i~~~M~~p~~-f~~~~~vl~~~~~~~~~~y~~~g~ 440 (471)
+.++..++....|+|.|-.......+|+|||+| .+| +...+...+..+|+....
T Consensus 198 ~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~k~iPr---Ai~~~~~~~~~~y~~~~~ 252 (457)
T PRK10580 198 WLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIPR---AINSVPMRILVFYVGTLF 252 (457)
T ss_pred hHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhHHHH---HHHHHHHHHHHHHHHHHH
Confidence 345566777889999999999999999999986 566 555666666777766543
No 105
>PRK10836 lysine transporter; Provisional
Probab=62.02 E-value=7.2 Score=40.92 Aligned_cols=55 Identities=15% Similarity=0.017 Sum_probs=42.3
Q ss_pred hhhhhHhhhccccccchhhHHhhhcCCC-CCcccchhhhHHHHHHHHHHHHHhhhhhhc
Q psy14360 389 LFFGTVIFAFEGIALVLPLQREMKKKKN-FNSSFGVLNMGSILIIALMLSMGFFGYLKY 446 (471)
Q Consensus 389 ~~~g~~~faf~~~~~~~~i~~~M~~p~~-f~~~~~vl~~~~~~~~~~y~~~g~~gY~~f 446 (471)
.......|+|.|-......-+|+|||+| -+| +...+...++.+|+.....-....
T Consensus 209 ~~~~~~~faf~G~e~~~~~a~E~knP~r~iPr---Ai~~~~~~v~~~Yvl~~~~~~~~v 264 (489)
T PRK10836 209 GVAMIVGFSFQGTELIGIAAGESEDPAKNIPR---AVRQVFWRILLFYVFAILIISLII 264 (489)
T ss_pred HHHHHHHHHHccHHHHHHHHHHhcCHHHHHHH---HHHHHHHHHHHHHHHHHHHHheec
Confidence 3344567999999999999999999974 555 777888999999997765443333
No 106
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=60.92 E-value=34 Score=35.71 Aligned_cols=48 Identities=8% Similarity=-0.000 Sum_probs=34.4
Q ss_pred hhhhhHhhhccccccchhhHHhhhcCC-CCCcccchhhhHHHHHHHHHHHHH
Q psy14360 389 LFFGTVIFAFEGIALVLPLQREMKKKK-NFNSSFGVLNMGSILIIALMLSMG 439 (471)
Q Consensus 389 ~~~g~~~faf~~~~~~~~i~~~M~~p~-~f~~~~~vl~~~~~~~~~~y~~~g 439 (471)
.++-...|+|.|-......-+|+|||+ +.+| +...+..+..+++....
T Consensus 221 ~~~~~~~fsf~G~e~~~~~a~E~knP~r~iP~---Ai~~s~~i~~~~~~~~~ 269 (482)
T TIGR00907 221 LGLLNPAWSMTGYDGTAHMAEEIENPEVVGPR---AIIGAVAIGIVTGFCFN 269 (482)
T ss_pred hhhhhhHHHhcCcchhhHHHHhcCChhhhcCH---HHHHHHHHHHHHHHHHH
Confidence 344446799999999999999999986 4566 66666666555444333
No 107
>PRK10746 putative transport protein YifK; Provisional
Probab=59.22 E-value=6.9 Score=40.72 Aligned_cols=56 Identities=14% Similarity=0.165 Sum_probs=44.6
Q ss_pred cccchhhhhhhHhhhccccccchhhHHhhhcCC-CCCcccchhhhHHHHHHHHHHHHHhh
Q psy14360 383 HIQQIPLFFGTVIFAFEGIALVLPLQREMKKKK-NFNSSFGVLNMGSILIIALMLSMGFF 441 (471)
Q Consensus 383 ~~~~~~~~~g~~~faf~~~~~~~~i~~~M~~p~-~f~~~~~vl~~~~~~~~~~y~~~g~~ 441 (471)
++.++..++....|+|.|-......-+|+|||+ +.|| +...+...+..+|+.....
T Consensus 198 g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~k~iP~---Ai~~~~~~i~~~yv~~~~~ 254 (461)
T PRK10746 198 GWKGFLTALCIVVASYQGVELIGITAGEAKNPQVTLRS---AVGKVLWRILIFYVGAIFV 254 (461)
T ss_pred cHHHHHHHHHHHHHHhcCHHHHHHHHHHhcChhhHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 355667888899999999999999999999996 5555 6666777777888775443
No 108
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=52.81 E-value=1.3e+02 Score=30.37 Aligned_cols=42 Identities=19% Similarity=0.375 Sum_probs=22.8
Q ss_pred eeeecchh-hcccccCCCcccchhhhH---HHHHHHHHHHHhhhhhhc
Q psy14360 114 ALVLPLQR-EMKKKKNFNSSFGVLNMG---SILIIALMLSMGFFGYLK 157 (471)
Q Consensus 114 ~~~~~i~~-~m~~p~~~~~~~~v~~~s---~~~~~~~Y~~~g~~gY~~ 157 (471)
..+-.+.+ |+|||+|..+. ....+ ......+|...+..|-..
T Consensus 198 iiv~~i~~~g~~~~~~~~~~--~i~~G~ia~i~l~~vY~~L~~lGa~~ 243 (378)
T TIGR00796 198 IVVNAIRSRGVTKPKKITKY--TIKAGLIAAVLLAFIYLSLFYLGATS 243 (378)
T ss_pred HHHHHHHHhCCCCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 33444555 89999664441 33333 344455666666666533
No 109
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=49.67 E-value=2.6e+02 Score=29.08 Aligned_cols=38 Identities=13% Similarity=0.211 Sum_probs=23.5
Q ss_pred cchHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHH
Q psy14360 33 YKLHYHMAIMLAPILFTAMIRNLKYIAPISAVANLIMG 70 (471)
Q Consensus 33 ~~~~~~~~i~~~~~~pl~~~~~l~~l~~~S~~~~~~~~ 70 (471)
++...-+++...+..-.....-++...++..+=....+
T Consensus 155 i~~~~~iii~~~iv~iYt~~GG~~av~~td~iQ~~v~~ 192 (471)
T TIGR02119 155 LSYLTALFIFSSSVLIYTTFGGFRAVALTDAIQGIVMF 192 (471)
T ss_pred CCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 45444455555556666777778888877765544433
No 110
>PLN02680 carbon-monoxide oxygenase
Probab=48.72 E-value=2.3e+02 Score=26.46 Aligned_cols=96 Identities=15% Similarity=0.250 Sum_probs=57.7
Q ss_pred cccchhHHHHHHHHhhccceeeecchhhcccccCCCcccchhhhHHHHHHHHHHHHhhhhhhcccCccccceeeecCCCC
Q psy14360 95 HIQQIPLFFGTVIFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGSITLNLSDRK 174 (471)
Q Consensus 95 ~~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~~~~~il~nl~~~~ 174 (471)
++..+....|.+.. .++..+. ++..+.+|+.+| .+-+..-.......++|+..-..+.++ .++-+-+.-
T Consensus 48 n~HPlLM~~Gfi~l--~geAIL~--yr~~~~~k~~~K---~iH~~L~~lA~~l~vvGl~avfk~hn~--~~~~nfySl-- 116 (232)
T PLN02680 48 NVHPVLMVIGLVLL--NGEAMLA--YKTVPGTKNLKK---LVHLTLQFLAFCLSLIGVWAALKFHNE--KGIDNFYSL-- 116 (232)
T ss_pred echHHHHHHHHHHH--HHHHHhc--cccccccchhHH---HHHHHHHHHHHHHHHHHHHHHHHhccc--cCccccccH--
Confidence 56656565555542 1232222 344454555555 666777777777778888554444433 333222222
Q ss_pred CChHHHHHHHHHHHHHHHhhccccchh
Q psy14360 175 DDPLALVVVGSIGFGILCTYSLQFYVP 201 (471)
Q Consensus 175 ~~~~~~v~~~~~~l~l~~s~pl~~~p~ 201 (471)
.+|+-...-.++.++.++++....+|.
T Consensus 117 HSWlGl~t~iL~~lQ~~~Gf~~f~~P~ 143 (232)
T PLN02680 117 HSWLGLACLFLFSLQWAAGFVTFWYPG 143 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 368888899999999988887777774
No 111
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=47.18 E-value=3.4e+02 Score=27.90 Aligned_cols=57 Identities=12% Similarity=0.103 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcch----hhhhhhhhhhhHhhhhhHHHHhhhccccCccc
Q psy14360 220 AFGETILRVSLVLLTCKLALVVVGS----IGFGILCTYSLQFYVPVAIIWAELEEKYGPFK 276 (471)
Q Consensus 220 ~~~~~~~r~~~~~~~~~iA~~ip~~----slvGs~~~~~l~fi~P~l~~l~~~~~~~g~~~ 276 (471)
+.+|...|....+.+.++.+..-+. .+.+.+.+-.+-+..++++.+..+++.+|+.+
T Consensus 324 ~~r~~i~~~~~~ip~~~i~i~~g~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~~mg~~~ 384 (416)
T COG1914 324 WRRRLITRTFAIVPGLAIIILFGDPARLLVFSQVLLSVILPFALIPLLLLTSDKKLMGDYK 384 (416)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhhhccc
Confidence 3566777765555544444443343 77777777777777777766665555455433
No 112
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=46.38 E-value=1.2e+02 Score=30.90 Aligned_cols=38 Identities=16% Similarity=0.190 Sum_probs=23.1
Q ss_pred cchHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHH
Q psy14360 33 YKLHYHMAIMLAPILFTAMIRNLKYIAPISAVANLIMG 70 (471)
Q Consensus 33 ~~~~~~~~i~~~~~~pl~~~~~l~~l~~~S~~~~~~~~ 70 (471)
++...-+++...+..-....--++...++..+=.+..+
T Consensus 114 i~~~~~~ii~~~i~~~Yt~~GG~~av~~Td~iQ~~i~~ 151 (407)
T TIGR00813 114 LDLYLSLLLLGAITILYTVFGGLKAVVWTDTIQAVIMI 151 (407)
T ss_pred chHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHH
Confidence 44444445555555666777777777777776544443
No 113
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=42.29 E-value=2.9e+02 Score=29.07 Aligned_cols=37 Identities=11% Similarity=0.067 Sum_probs=22.7
Q ss_pred cchHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHH
Q psy14360 33 YKLHYHMAIMLAPILFTAMIRNLKYIAPISAVANLIM 69 (471)
Q Consensus 33 ~~~~~~~~i~~~~~~pl~~~~~l~~l~~~S~~~~~~~ 69 (471)
++...-+++...+..--...-=++...++..+=.+..
T Consensus 158 i~~~~~iii~~~iv~iYt~~GGl~aV~~TD~iQ~~im 194 (502)
T PRK15419 158 MSYETALWAGAAATILYTFIGGFLAVSWTDTVQASLM 194 (502)
T ss_pred CCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 4444445555566666677777777777776554433
No 114
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=40.32 E-value=3.7e+02 Score=28.20 Aligned_cols=27 Identities=7% Similarity=0.081 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhhccccchhhHHHHH
Q psy14360 39 MAIMLAPILFTAMIRNLKYIAPISAVA 65 (471)
Q Consensus 39 ~~i~~~~~~pl~~~~~l~~l~~~S~~~ 65 (471)
+.+...++..-...--++...|+..+=
T Consensus 159 ~~~~~~~v~~Yt~~gG~~av~~Td~iq 185 (493)
T COG0591 159 ILIGALIVALYTFLGGLRAVVWTDFIQ 185 (493)
T ss_pred HHHHHHHHHHHHHHcChhHHHHHHHHH
Confidence 334455556666677777777776643
No 115
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=39.07 E-value=49 Score=33.56 Aligned_cols=42 Identities=14% Similarity=0.193 Sum_probs=20.3
Q ss_pred cchHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHhh
Q psy14360 33 YKLHYHMAIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIA 74 (471)
Q Consensus 33 ~~~~~~~~i~~~~~~pl~~~~~l~~l~~~S~~~~~~~~~~~~ 74 (471)
++...-+++...+..-....--++...+...+=.+..+.+..
T Consensus 118 i~~~~~~~i~~~i~~iYt~~GGl~av~~td~iQ~~i~~~~~~ 159 (406)
T PF00474_consen 118 IPYNTAILIVGVIVIIYTFFGGLRAVAWTDFIQGVIMIIGAI 159 (406)
T ss_dssp --HHHHHHHHHHHHHHTTCTT------SHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHH
Confidence 555555555566666667777778888877766555444433
No 116
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=38.40 E-value=4.1e+02 Score=26.35 Aligned_cols=20 Identities=25% Similarity=0.443 Sum_probs=14.5
Q ss_pred cceeeecchhhcccccCCCc
Q psy14360 112 GIALVLPLQREMKKKKNFNS 131 (471)
Q Consensus 112 ~~~~~~~i~~~m~~p~~~~~ 131 (471)
+...+.++-++||+|++-.+
T Consensus 194 ~~avLv~lg~~~~~~~~~~~ 213 (349)
T COG3949 194 AVAVLVPLGGRMESRKVSGI 213 (349)
T ss_pred HhHhhhhhcccccccchhhh
Confidence 45667788899999876444
No 117
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=35.33 E-value=29 Score=35.74 Aligned_cols=62 Identities=13% Similarity=0.256 Sum_probs=44.9
Q ss_pred chhhhhhhHhhhccccccchhhHHhhhcC-C-----C--CCcccchhhhHHHHHHHHHHHHHhhhhhhcc
Q psy14360 386 QIPLFFGTVIFAFEGIALVLPLQREMKKK-K-----N--FNSSFGVLNMGSILIIALMLSMGFFGYLKYG 447 (471)
Q Consensus 386 ~~~~~~g~~~faf~~~~~~~~i~~~M~~p-~-----~--f~~~~~vl~~~~~~~~~~y~~~g~~gY~~fG 447 (471)
....++++.+|+|+-|+.+|+....+|+. + + .+|.++++..+..+..++|++.-...-+.-+
T Consensus 210 ~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs 279 (443)
T PRK13629 210 TVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLS 279 (443)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46788899999999999999999997654 1 2 3444457777877777777766554444433
No 118
>KOG3832|consensus
Probab=32.54 E-value=51 Score=29.99 Aligned_cols=91 Identities=11% Similarity=0.088 Sum_probs=53.1
Q ss_pred HHHHHHHHHH-HHHHHhhccccchhhHHHHHHHHHHHHhheeeeeeccc--CCCCCCCCccccccchhHHHHHHHHhhcc
Q psy14360 36 HYHMAIMLAP-ILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYILQD--LPPVSTRNYVGHIQQIPLFFGTVIFAFEG 112 (471)
Q Consensus 36 ~~~~~i~~~~-~~pl~~~~~l~~l~~~S~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~faf~~ 112 (471)
|.++.++.++ .+|+.+. ++.+-+++-+....+-++........+-.+ ....+.+|.....-++-..+|...|+|.+
T Consensus 210 r~flaiftlll~lpftf~-diqktk~iqiltslmrw~~~~~g~~l~tmqaeedaa~a~p~arc~cgfgkl~~~aly~~~a 288 (319)
T KOG3832|consen 210 RFFLAIFTLLLCLPFTFA-DIQKTKHIQILTSLMRWAAFILGISLATMQAEEDAAAAHPPARCFCGFGKLFGCALYAFMA 288 (319)
T ss_pred HHHHHHHHHHHcCceeEe-ccccchhHHHHHHHHHHHhccchhhhhhhhhcccccccCCccccccccccccchhhHHHHh
Confidence 4445444333 3355543 556666666666666665544333222111 11112233333455666788999999999
Q ss_pred ceeeecchhhccccc
Q psy14360 113 IALVLPLQREMKKKK 127 (471)
Q Consensus 113 ~~~~~~i~~~m~~p~ 127 (471)
|.+.|.....++.+.
T Consensus 289 ~cmapda~gagq~k~ 303 (319)
T KOG3832|consen 289 HCMAPDAIGAGQTKD 303 (319)
T ss_pred hccCCCCCCCCeecc
Confidence 999999988887664
No 119
>PRK11017 codB cytosine permease; Provisional
Probab=30.69 E-value=5.9e+02 Score=25.86 Aligned_cols=46 Identities=24% Similarity=0.170 Sum_probs=26.4
Q ss_pred cceeeecchhhcccccCCCcccchhhhHHHHHHHHHHHHhhhhhhcccC
Q psy14360 112 GIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGE 160 (471)
Q Consensus 112 ~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~ 160 (471)
.-.+.+...+..|+|++-.. ....+..+...+-..+|...-.+.|+
T Consensus 199 ~~~~~~DysRy~k~~~~~~~---~~~lg~~i~~~~~~~~G~~~a~~~~~ 244 (404)
T PRK11017 199 GGTLTADFVRFGRSAKIAVL---ATMVAFFLGNSLMFIFGAAGAAVYGQ 244 (404)
T ss_pred hHhcCCChHhhccCccceee---hhHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 35677888888887765322 33444445555555556555555554
No 120
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=30.34 E-value=97 Score=23.91 Aligned_cols=61 Identities=16% Similarity=0.343 Sum_probs=39.8
Q ss_pred hhhhhHhhhccccccchhhHHhhhcCCCCCcccchhhhHHHHHHHHHHHHHhhhhhhccCccccc
Q psy14360 389 LFFGTVIFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGS 453 (471)
Q Consensus 389 ~~~g~~~faf~~~~~~~~i~~~M~~p~~f~~~~~vl~~~~~~~~~~y~~~g~~gY~~fG~~~~~~ 453 (471)
...|++..+-.|...+.+...+=.+|.+..+ + ++ ....++...=+.+|++.|-.|| ...++
T Consensus 15 li~GIiLL~~ACIFAfidFSK~~s~~~~~~w-R-al-Sii~FIlG~vl~lGilifs~y~-~C~~~ 75 (91)
T PHA02680 15 LICGVLLLTAACVFAFVDFSKNTSNVTDYVW-R-AL-SVTCFIVGAVLLLGLFVFSMYR-KCSGS 75 (91)
T ss_pred HHHHHHHHHHHHHHhhhhhhccCCCCcchhH-H-HH-HHHHHHHHHHHHHHHHHHHHhc-ccCCC
Confidence 3456666666666666777666666777765 2 32 4455556667788999999999 44443
No 121
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=25.01 E-value=95 Score=32.87 Aligned_cols=37 Identities=19% Similarity=0.253 Sum_probs=22.5
Q ss_pred cccchhHHHHHHHHhhc-cceeeecchhhcccccCCCc
Q psy14360 95 HIQQIPLFFGTVIFAFE-GIALVLPLQREMKKKKNFNS 131 (471)
Q Consensus 95 ~~~~~~~~~g~~~faf~-~~~~~~~i~~~m~~p~~~~~ 131 (471)
+.+-+..+++-..|+.. |.+.+...-+-+|+.++..+
T Consensus 247 ~~~vW~~A~~Q~ffsl~ig~G~~it~~Sy~~~~~n~~~ 284 (523)
T PF00209_consen 247 DPKVWIAALGQVFFSLSIGFGIMITYGSYNKFKNNIFR 284 (523)
T ss_dssp SHHHHHHHHHHHHHHTTTTSSHHHHHHTTS-TTS-SHH
T ss_pred HHHHHHHHHHHHhhccCCCcceEEEEcCcCCCCccccc
Confidence 44456778888888886 45555555556666666555
No 122
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=23.31 E-value=48 Score=34.07 Aligned_cols=69 Identities=20% Similarity=0.223 Sum_probs=48.0
Q ss_pred cccccchhhhhhhHhhhccccccchhhHHhhhcCCCCC-cccchhhhHHHHHHHHH-----HHHHhhhhhhccCcccc
Q psy14360 381 VGHIQQIPLFFGTVIFAFEGIALVLPLQREMKKKKNFN-SSFGVLNMGSILIIALM-----LSMGFFGYLKYGENVKG 452 (471)
Q Consensus 381 ~~~~~~~~~~~g~~~faf~~~~~~~~i~~~M~~p~~f~-~~~~vl~~~~~~~~~~y-----~~~g~~gY~~fG~~~~~ 452 (471)
++.+.++..++-+.+|||+|...+=--..|-|||+|-- | +.+.-..=+.++| +.+.+.-|=.++++.++
T Consensus 199 P~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k~ipk---Ain~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SP 273 (462)
T COG1113 199 PNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPEKAIPK---AINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSP 273 (462)
T ss_pred CCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhhHHHH---HHhhhhHHHHHHHHHHHHHHheeccccccCCCCCc
Confidence 45567778888899999999999999999999998543 4 4444333334444 45666666666654443
No 123
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=23.28 E-value=96 Score=20.85 Aligned_cols=28 Identities=21% Similarity=0.383 Sum_probs=19.2
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhcccCcc
Q psy14360 135 VLNMGSILIIALMLSMGFFGYLKYGENV 162 (471)
Q Consensus 135 v~~~s~~~~~~~Y~~~g~~gY~~fG~~~ 162 (471)
+...+..+..++-...|..-|.+||+..
T Consensus 7 A~~~~i~i~~lL~~~TgyaiYtaFGppS 34 (46)
T PRK13183 7 ALSLAITILAILLALTGFGIYTAFGPPS 34 (46)
T ss_pred hHHHHHHHHHHHHHHhhheeeeccCCcc
Confidence 4455666666677777777788888653
No 124
>PHA03048 IMV membrane protein; Provisional
Probab=23.26 E-value=1.2e+02 Score=23.54 Aligned_cols=61 Identities=18% Similarity=0.309 Sum_probs=41.6
Q ss_pred hhhhhhHhhhccccccchhhHHhhhcCCCCCcccchhhhHHHHHHHHHHHHHhhhhhhccCccccc
Q psy14360 388 PLFFGTVIFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGS 453 (471)
Q Consensus 388 ~~~~g~~~faf~~~~~~~~i~~~M~~p~~f~~~~~vl~~~~~~~~~~y~~~g~~gY~~fG~~~~~~ 453 (471)
....|++..+-.|...+.+...+ +|++.. |+ ++ ....++...-+.+|++-|-.||....++
T Consensus 14 vli~GIiLL~~aCIfAfidfsK~--k~~~~~-wR-al-sii~FIlgivl~lG~~ifsmy~r~C~~~ 74 (93)
T PHA03048 14 ALIGGIILLAASCIFAFVDFSKN--KATVTV-WR-AL-SGIAFVLGIVMTIGMLIYSMWGRYCTPS 74 (93)
T ss_pred HHHHHHHHHHHHHHHhhhhhhcC--CCcchh-HH-HH-HHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 35566666666676667777666 566544 33 33 4455666777889999999999877765
No 125
>COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) [Signal transduction mechanisms]
Probab=22.63 E-value=1.1e+02 Score=26.87 Aligned_cols=49 Identities=12% Similarity=-0.002 Sum_probs=36.0
Q ss_pred cccccchhhHHhhhcCCCCCcccchhhhHHHHH-HHHHHHHHhhhhhhccCcccc
Q psy14360 399 EGIALVLPLQREMKKKKNFNSSFGVLNMGSILI-IALMLSMGFFGYLKYGENVKG 452 (471)
Q Consensus 399 ~~~~~~~~i~~~M~~p~~f~~~~~vl~~~~~~~-~~~y~~~g~~gY~~fG~~~~~ 452 (471)
-+....+.-+++.|+|+=-+. ...+..+ +++|.+.|+.+|+.+-++-.+
T Consensus 25 ~~~~~~~~wy~~L~kP~w~pp-----~~~f~~vWtvLy~l~~iSa~lvW~~~~~~ 74 (161)
T COG3476 25 FISSRDPNWYNNLKKPFWLPP-----EWAFPPVWTVLYALIGISAYLVWEKGPGQ 74 (161)
T ss_pred HhccccHHHHHhccCCCCCCh-----HHHhhHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 455666778899999963333 4666666 899999999999998655443
No 126
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=21.69 E-value=1.2e+02 Score=20.10 Aligned_cols=27 Identities=15% Similarity=0.237 Sum_probs=19.4
Q ss_pred hhhHHHHHHHHHHHHhhhhhhcccCcc
Q psy14360 136 LNMGSILIIALMLSMGFFGYLKYGENV 162 (471)
Q Consensus 136 ~~~s~~~~~~~Y~~~g~~gY~~fG~~~ 162 (471)
...+..+..++-...|...|.+||+..
T Consensus 5 ~~~~i~i~~~lv~~Tgy~iYtaFGppS 31 (43)
T PF02468_consen 5 TVLAIFISCLLVSITGYAIYTAFGPPS 31 (43)
T ss_pred eeHHHHHHHHHHHHHhhhhhheeCCCc
Confidence 445666667777778888899998643
No 127
>KOG1619|consensus
Probab=20.55 E-value=3.4e+02 Score=25.46 Aligned_cols=97 Identities=12% Similarity=0.184 Sum_probs=64.6
Q ss_pred cccchhHHHHHHHHhhccceeeecchhhccc-ccCCCcccchhhhHHHHHHHHHHHHhhhhhhcccCccccceeeecCCC
Q psy14360 95 HIQQIPLFFGTVIFAFEGIALVLPLQREMKK-KKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGSITLNLSDR 173 (471)
Q Consensus 95 ~~~~~~~~~g~~~faf~~~~~~~~i~~~m~~-p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~~~~~il~nl~~~ 173 (471)
|+..+....|-+.+ |+...-+|+.-|+ .|+.+| .+-...=++.+.-.++|+..-..+-++..-+=..|+.
T Consensus 56 nlHP~lMviGfI~l----~GeAiL~YR~~r~~~k~~~K---liH~~LH~~Alvl~i~gl~avf~~hn~~~i~NfySLH-- 126 (245)
T KOG1619|consen 56 NLHPVLMVIGFIYL----QGEAILIYRVFRYTSKKVSK---LIHLGLHIIALVLAIIGLCAVFDSHNLVGIANFYSLH-- 126 (245)
T ss_pred CcchHHHHHHHHHh----ccceeeeeehhhhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhcCccceeeHH--
Confidence 45555555554433 5556666777443 355666 7777777777888888888887776665522233444
Q ss_pred CCChHHHHHHHHHHHHHHHhhccccchhH
Q psy14360 174 KDDPLALVVVGSIGFGILCTYSLQFYVPV 202 (471)
Q Consensus 174 ~~~~~~~v~~~~~~l~l~~s~pl~~~p~~ 202 (471)
+|.-..+-.++.++...++-..++|..
T Consensus 127 --SWlGl~~v~ly~~Q~v~GF~tfl~pg~ 153 (245)
T KOG1619|consen 127 --SWLGLCVVILYSLQWVFGFFTFLFPGS 153 (245)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 588888888999999888877777743
No 128
>CHL00020 psbN photosystem II protein N
Probab=20.38 E-value=1e+02 Score=20.44 Aligned_cols=27 Identities=15% Similarity=0.201 Sum_probs=18.9
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhcccCc
Q psy14360 135 VLNMGSILIIALMLSMGFFGYLKYGEN 161 (471)
Q Consensus 135 v~~~s~~~~~~~Y~~~g~~gY~~fG~~ 161 (471)
+...+..+..++....|..-|.+||+.
T Consensus 4 A~~~~i~i~~ll~~~Tgy~iYtaFGpp 30 (43)
T CHL00020 4 ATLVAIFISGLLVSFTGYALYTAFGQP 30 (43)
T ss_pred hhhHHHHHHHHHHHhhheeeeeccCCc
Confidence 344566666677777777788888865
Done!