Query psy14360
Match_columns 471
No_of_seqs 286 out of 2501
Neff 8.9
Searched_HMMs 29240
Date Fri Aug 16 17:55:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14360.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14360hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 97.4 0.00083 2.8E-08 67.9 11.2 62 96-160 190-252 (445)
2 4djk_A Probable glutamate/gamm 97.1 0.0061 2.1E-07 62.6 15.0 104 100-207 204-318 (511)
3 3gia_A Uncharacterized protein 96.9 0.0018 6.3E-08 65.3 8.1 60 97-159 188-248 (444)
4 3l1l_A Arginine/agmatine antip 93.4 0.063 2.1E-06 53.8 4.9 63 384-449 190-253 (445)
5 3gia_A Uncharacterized protein 92.5 0.03 1E-06 56.3 0.8 62 383-447 186-248 (444)
6 4djk_A Probable glutamate/gamm 88.2 0.63 2.2E-05 47.4 6.4 59 388-449 204-263 (511)
7 2jln_A MHP1; hydantoin, transp 73.7 5.9 0.0002 40.2 7.1 61 9-71 116-177 (501)
8 3dh4_A Sodium/glucose cotransp 20.8 3.1E+02 0.01 27.6 8.9 32 39-70 137-168 (530)
9 2a65_A Leutaa, Na(+):neurotran 16.7 3.9E+02 0.013 26.9 8.3 36 96-131 241-277 (519)
10 3bo0_B Preprotein translocase 9.1 4.2E+02 0.014 17.9 4.2 42 405-447 11-55 (65)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=97.37 E-value=0.00083 Score=67.86 Aligned_cols=62 Identities=10% Similarity=0.020 Sum_probs=50.6
Q ss_pred ccchhHHHHHHHHhhccceeeecchhhcccc-cCCCcccchhhhHHHHHHHHHHHHhhhhhhcccC
Q psy14360 96 IQQIPLFFGTVIFAFEGIALVLPLQREMKKK-KNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGE 160 (471)
Q Consensus 96 ~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p-~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~ 160 (471)
+.++...+....|+|.|........+|+||| |+.+| .+..+...+.++|...........+.
T Consensus 190 ~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~---a~~~~~~~~~~~y~~~~~~~~~~~~~ 252 (445)
T 3l1l_A 190 FGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPI---ATIGGVLIAAVCYVLSTTAIMGMIPN 252 (445)
T ss_dssp ---HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccH---HHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 4466777888999999999999999999999 55778 88999999999999988776665553
No 2
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=97.14 E-value=0.0061 Score=62.63 Aligned_cols=104 Identities=13% Similarity=0.121 Sum_probs=67.6
Q ss_pred hHHHHHHHHhhccceeeecchhhcccccC-CCcccchhhhHHHHHHHHHHHHhhhhhhcccCcccc---c-------eee
Q psy14360 100 PLFFGTVIFAFEGIALVLPLQREMKKKKN-FNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKG---S-------ITL 168 (471)
Q Consensus 100 ~~~~g~~~faf~~~~~~~~i~~~m~~p~~-~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~~~~---~-------il~ 168 (471)
...+....|+|.|........+|+|||+| .+| .+..+..++.++|....+.-....+++... . +..
T Consensus 204 ~~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~---ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (511)
T 4djk_A 204 LVVFVAFILSYMGVEASATHVNEMSNPGRDYPL---AMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMS 280 (511)
T ss_dssp TTTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHH---HHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhccCcccchhH---HHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHH
Confidence 34567789999999999999999999954 677 899999999999999887766666543211 1 111
Q ss_pred ecCCCCCChHHHHHHHHHHHHHHHhhccccchhHHHHHH
Q psy14360 169 NLSDRKDDPLALVVVGSIGFGILCTYSLQFYVPVAIIWA 207 (471)
Q Consensus 169 nl~~~~~~~~~~v~~~~~~l~l~~s~pl~~~p~~~~~~~ 207 (471)
+... ...+...+..+...++.+.+.--......+.++.
T Consensus 281 ~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a 318 (511)
T 4djk_A 281 HVAP-EIEWTVRVISALLLLGVLAEIASWIVGPSRGMYV 318 (511)
T ss_dssp SSCS-SCTTHHHHHHHHHHHHHHHHHHHHTTHHHHHTCH
T ss_pred HhCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1110 0134555666666666655543333444444443
No 3
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=96.89 E-value=0.0018 Score=65.29 Aligned_cols=60 Identities=3% Similarity=0.164 Sum_probs=49.4
Q ss_pred cchhHHHHHHHHhhccceeeecchhhcccccC-CCcccchhhhHHHHHHHHHHHHhhhhhhccc
Q psy14360 97 QQIPLFFGTVIFAFEGIALVLPLQREMKKKKN-FNSSFGVLNMGSILIIALMLSMGFFGYLKYG 159 (471)
Q Consensus 97 ~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~-~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG 159 (471)
.++...+....|+|.|........+|+|||+| .+| .+..+...+.++|....+......+
T Consensus 188 ~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip~---ai~~~~~~~~~~y~~~~~~~~~~~~ 248 (444)
T 3gia_A 188 SGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPR---AIFISILIVMFVYVGVAISAIGNLP 248 (444)
T ss_dssp HHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchhH---HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 35666777788999999999999999999965 788 8999999999999988776554444
No 4
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=93.44 E-value=0.063 Score=53.84 Aligned_cols=63 Identities=11% Similarity=0.020 Sum_probs=51.2
Q ss_pred ccchhhhhhhHhhhccccccchhhHHhhhcCC-CCCcccchhhhHHHHHHHHHHHHHhhhhhhccCc
Q psy14360 384 IQQIPLFFGTVIFAFEGIALVLPLQREMKKKK-NFNSSFGVLNMGSILIIALMLSMGFFGYLKYGEN 449 (471)
Q Consensus 384 ~~~~~~~~g~~~faf~~~~~~~~i~~~M~~p~-~f~~~~~vl~~~~~~~~~~y~~~g~~gY~~fG~~ 449 (471)
+.++..++....|+|.|........+|+|||+ +.+| ....+...++++|+..........+.+
T Consensus 190 ~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~---a~~~~~~~~~~~y~~~~~~~~~~~~~~ 253 (445)
T 3l1l_A 190 FGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPI---ATIGGVLIAAVCYVLSTTAIMGMIPNA 253 (445)
T ss_dssp ---HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccH---HHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 55677888889999999999999999999995 5677 788899999999999887766666543
No 5
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=92.49 E-value=0.03 Score=56.29 Aligned_cols=62 Identities=3% Similarity=0.171 Sum_probs=50.8
Q ss_pred cccchhhhhhhHhhhccccccchhhHHhhhcCCC-CCcccchhhhHHHHHHHHHHHHHhhhhhhcc
Q psy14360 383 HIQQIPLFFGTVIFAFEGIALVLPLQREMKKKKN-FNSSFGVLNMGSILIIALMLSMGFFGYLKYG 447 (471)
Q Consensus 383 ~~~~~~~~~g~~~faf~~~~~~~~i~~~M~~p~~-f~~~~~vl~~~~~~~~~~y~~~g~~gY~~fG 447 (471)
++.++..+.....|+|.|........+|+|||+| .+| ....+...++++|+...+......+
T Consensus 186 g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip~---ai~~~~~~~~~~y~~~~~~~~~~~~ 248 (444)
T 3gia_A 186 AVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPR---AIFISILIVMFVYVGVAISAIGNLP 248 (444)
T ss_dssp HHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred chHHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchhH---HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3456677788889999999999999999999975 777 7888999999999988766555544
No 6
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=88.24 E-value=0.63 Score=47.35 Aligned_cols=59 Identities=15% Similarity=0.151 Sum_probs=49.1
Q ss_pred hhhhhhHhhhccccccchhhHHhhhcCCC-CCcccchhhhHHHHHHHHHHHHHhhhhhhccCc
Q psy14360 388 PLFFGTVIFAFEGIALVLPLQREMKKKKN-FNSSFGVLNMGSILIIALMLSMGFFGYLKYGEN 449 (471)
Q Consensus 388 ~~~~g~~~faf~~~~~~~~i~~~M~~p~~-f~~~~~vl~~~~~~~~~~y~~~g~~gY~~fG~~ 449 (471)
..++....|+|.|........+|+|||+| .+| .+..+..+++++|+...+.-....+++
T Consensus 204 ~~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~---ai~~~~~~~~~~y~~~~~~~~~~~~~~ 263 (511)
T 4djk_A 204 LVVFVAFILSYMGVEASATHVNEMSNPGRDYPL---AMLLLMVAAICLSSVGGLSIAMVIPGN 263 (511)
T ss_dssp TTTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHH---HHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhccCcccchhH---HHHHHHHHHHHHHHHHHHHHHeecCHh
Confidence 45677789999999999999999999974 566 788899999999998887766666654
No 7
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=73.70 E-value=5.9 Score=40.22 Aligned_cols=61 Identities=15% Similarity=0.109 Sum_probs=31.8
Q ss_pred ccchhhHHhhHhhHHHHHHhhccCcc-hHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHH
Q psy14360 9 GFCCVYFVFVAQSSHQICLALDIDYK-LHYHMAIMLAPILFTAMIRNLKYIAPISAVANLIMGL 71 (471)
Q Consensus 9 G~~~~y~i~~~~~l~~~~~~~~~~~~-~~~~~~i~~~~~~pl~~~~~l~~l~~~S~~~~~~~~~ 71 (471)
|-...-....|+.+.+++.... .++ .....++..++.++..+ .-++.++++..++....+.
T Consensus 116 gw~~v~~~~gg~al~~~~~~~~-g~~~~~v~~~i~~~l~~~~~~-~G~~~i~~~~~~~~p~~~i 177 (501)
T 2jln_A 116 FWFGFQTWLGALALDEITRLLT-GFTNLPLWIVIFGAIQVVTTF-YGITFIRWMNVFASPVLLA 177 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-CcchHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHH
Confidence 3334444556777777765332 232 33444555555566654 3456666666555444333
No 8
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=20.75 E-value=3.1e+02 Score=27.55 Aligned_cols=32 Identities=6% Similarity=0.007 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhhccccchhhHHHHHHHHHH
Q psy14360 39 MAIMLAPILFTAMIRNLKYIAPISAVANLIMG 70 (471)
Q Consensus 39 ~~i~~~~~~pl~~~~~l~~l~~~S~~~~~~~~ 70 (471)
+++..++..-....--++...++..+=.+..+
T Consensus 137 i~i~~~i~~~Yt~~GGl~aV~~TD~iQ~~im~ 168 (530)
T 3dh4_A 137 ILGLALFALVYSIYGGLSAVVWTDVIQVFFLV 168 (530)
T ss_dssp HHHHHHHHHHTTC------CCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 33344444444555566666666554444333
No 9
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=16.68 E-value=3.9e+02 Score=26.89 Aligned_cols=36 Identities=8% Similarity=0.139 Sum_probs=22.0
Q ss_pred ccchhHHHHHHHHhhcc-ceeeecchhhcccccCCCc
Q psy14360 96 IQQIPLFFGTVIFAFEG-IALVLPLQREMKKKKNFNS 131 (471)
Q Consensus 96 ~~~~~~~~g~~~faf~~-~~~~~~i~~~m~~p~~~~~ 131 (471)
++-+..+.|-..|++.. .+.+...-+-+|+.++..+
T Consensus 241 ~~vw~~A~gQ~FFSLslG~G~~ity~SY~~~~~n~~~ 277 (519)
T 2a65_A 241 PGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDIVL 277 (519)
T ss_dssp HHHHHHHHHHHHHHHTTTSSHHHHHHTTSCTTSCCHH
T ss_pred HHHHHHHHHHHHHHhHHHHhHHhhhhcccCCCcChHh
Confidence 34466778888888874 3444555555665555544
No 10
>3bo0_B Preprotein translocase SECE subunit; ribosome-SECY complex, protein translocation; 9.60A {Escherichia coli} PDB: 3bo1_B 3kcr_B
Probab=9.12 E-value=4.2e+02 Score=17.89 Aligned_cols=42 Identities=12% Similarity=0.045 Sum_probs=20.9
Q ss_pred hhhHHhhhc---CCCCCcccchhhhHHHHHHHHHHHHHhhhhhhcc
Q psy14360 405 LPLQREMKK---KKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYG 447 (471)
Q Consensus 405 ~~i~~~M~~---p~~f~~~~~vl~~~~~~~~~~y~~~g~~gY~~fG 447 (471)
=+..+|||+ |.+-+.+. =.......+.+..+.+|++||..++
T Consensus 11 ~~~~~E~kkV~wptrKp~~~-e~~~v~~~t~vv~~~v~~i~~~i~l 55 (65)
T 3bo0_B 11 REARTEVRKVIWPTRKPTKD-EYLAVAKVTALGISLLGIIGYIIHV 55 (65)
T ss_dssp HHHHHHHHHHSCTTTTTCTT-HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhheeccCCCCCHH-HHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 356778876 55433221 1222223334555566666666554
Done!