Query psy14360
Match_columns 471
No_of_seqs 286 out of 2501
Neff 8.9
Searched_HMMs 13730
Date Fri Aug 16 17:55:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14360.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/14360hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2vv5a3 f.34.1.1 (A:27-112) Me 14.0 1.7E+02 0.012 19.3 7.0 44 201-244 22-65 (86)
2 d1r3jc_ f.14.1.1 (C:) Potassiu 6.2 1.8E+02 0.013 20.0 3.0 16 181-196 66-81 (103)
3 d1kqfb2 f.23.22.1 (B:246-290) 3.6 4.1E+02 0.03 15.4 2.8 28 135-162 11-38 (45)
4 d1q90r_ f.23.12.1 (R:) ISP sub 2.9 4.1E+02 0.03 14.9 2.1 19 246-264 17-35 (39)
5 d1jb0l_ f.31.1.1 (L:) Photosys 2.2 1.9E+02 0.014 21.6 0.1 82 330-412 55-147 (151)
6 d1rh5b_ f.23.28.1 (B:) Preprot 2.0 4.8E+02 0.035 15.8 1.7 15 144-158 31-45 (56)
7 d2fufa1 d.89.1.1 (A:131-256) T 1.4 4.1E+02 0.03 19.1 0.6 9 411-419 2-10 (126)
8 d1h9aa1 c.2.1.3 (A:1-181,A:413 1.3 5.9E+02 0.043 19.4 1.6 23 246-268 10-32 (195)
9 d2h8pc1 f.14.1.1 (C:22-78) Pot 1.2 8.2E+02 0.06 14.6 1.8 36 136-172 8-43 (57)
10 d1qkia1 c.2.1.3 (A:12-199,A:43 1.2 6.9E+02 0.05 19.2 1.7 24 245-268 24-47 (203)
No 1
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=14.03 E-value=1.7e+02 Score=19.29 Aligned_cols=44 Identities=16% Similarity=0.074 Sum_probs=21.5
Q ss_pred hHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHHHHHHhhcch
Q psy14360 201 PVAIIWAELEEKYGPFKHPAFGETILRVSLVLLTCKLALVVVGS 244 (471)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~ip~~ 244 (471)
..+.+++..+++..++..........|..+.+....++...=.+
T Consensus 22 i~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~i~~~~~L~~~Gi 65 (86)
T d2vv5a3 22 ISNAVNRLMISRKIDATVADFLSALVRYGIIAFTLIAALGRVGV 65 (86)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34445544443322222223445566666666666666554333
No 2
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=6.19 E-value=1.8e+02 Score=20.02 Aligned_cols=16 Identities=0% Similarity=-0.325 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHhhcc
Q psy14360 181 VVVGSIGFGILCTYSL 196 (471)
Q Consensus 181 v~~~~~~l~l~~s~pl 196 (471)
..|+...+..+.+..+
T Consensus 66 ~gr~~~~~~~~~Gi~~ 81 (103)
T d1r3jc_ 66 WGRCVAVVVMVAGITS 81 (103)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3444444444444333
No 3
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=3.62 E-value=4.1e+02 Score=15.42 Aligned_cols=28 Identities=18% Similarity=0.120 Sum_probs=17.7
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhcccCcc
Q psy14360 135 VLNMGSILIIALMLSMGFFGYLKYGENV 162 (471)
Q Consensus 135 v~~~s~~~~~~~Y~~~g~~gY~~fG~~~ 162 (471)
++.---......-.+.|++=|...|.+.
T Consensus 11 v~Kpl~~~~~~~~~~~~~fHYv~vGPn~ 38 (45)
T d1kqfb2 11 ALKPLAAAGFIATFAGLIFHYIGIGPNK 38 (45)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHCCBC
T ss_pred hHHHHHHHHHHHHHHHHHHhhheeCCCc
Confidence 3433344444555667888898888764
No 4
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=2.91 E-value=4.1e+02 Score=14.89 Aligned_cols=19 Identities=5% Similarity=-0.272 Sum_probs=11.5
Q ss_pred hhhhhhhhhhHhhhhhHHH
Q psy14360 246 GFGILCTYSLQFYVPVAII 264 (471)
Q Consensus 246 lvGs~~~~~l~fi~P~l~~ 264 (471)
+.|+.+........|-..|
T Consensus 17 l~G~~~~~~~g~l~py~~f 35 (39)
T d1q90r_ 17 LAGGAGLPITTLALGYGAF 35 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHhccchhhhhhccceeEE
Confidence 3466666666666665443
No 5
>d1jb0l_ f.31.1.1 (L:) Photosystem I reaction center subunit XI, PsaL {Synechococcus elongatus [TaxId: 32046]}
Probab=2.23 E-value=1.9e+02 Score=21.65 Aligned_cols=82 Identities=15% Similarity=0.088 Sum_probs=45.6
Q ss_pred HHHHHHHhhcccCCcchhHHHHHHHHHHHHhhheEE--EE--eccCCCCCccCcc--cccccch-----hhhhhhHhhhc
Q psy14360 330 MLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIY--YY--ILQDLPPVSTRNY--VGHIQQI-----PLFFGTVIFAF 398 (471)
Q Consensus 330 ~~~~~~pl~~~~~l~~ls~~S~~~~~~~~~~~~ii~--~~--~~~~~~~~~~~~~--~~~~~~~-----~~~~g~~~faf 398 (471)
..-|..-+.=+||-+.-...+.++.+.++....+.+ |. ++++.++. .++. ...|+++ ....|-..|||
T Consensus 55 L~GPF~~lGPLRnt~~a~~aGllsaiglv~Ilt~~L~lYg~~sf~~~~~~-~d~l~t~~gWs~F~~GF~~Gg~GGa~fAy 133 (151)
T d1jb0l_ 55 LIGPWVKLGPLRDSDVANLGGLISGIALILVATACLAAYGLVSFQKGGSS-SDPLKTSEGWSQFTAGFFVGAMGSAFVAF 133 (151)
T ss_dssp HTHHHHHHSTTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCS-SCGGGSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eechhhhhcCCcCchHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCC-cccccCcccHHHhhchhhhccccHHHHHH
Confidence 456666677788877666555655555443222211 11 12222111 1221 2345544 35778899999
Q ss_pred cccccchhhHHhhh
Q psy14360 399 EGIALVLPLQREMK 412 (471)
Q Consensus 399 ~~~~~~~~i~~~M~ 412 (471)
.--.+..-++.-||
T Consensus 134 ~Ll~n~~~~d~i~~ 147 (151)
T d1jb0l_ 134 FLLENFLVVDGIMT 147 (151)
T ss_dssp HHHHTHHHHHHHHH
T ss_pred HHHcchHHHHHHHH
Confidence 88888877777766
No 6
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=2.00 E-value=4.8e+02 Score=15.85 Aligned_cols=15 Identities=20% Similarity=0.361 Sum_probs=8.7
Q ss_pred HHHHHHHhhhhhhcc
Q psy14360 144 IALMLSMGFFGYLKY 158 (471)
Q Consensus 144 ~~~Y~~~g~~gY~~f 158 (471)
.+-..++|+.||..+
T Consensus 31 ~iG~~i~G~IGf~I~ 45 (56)
T d1rh5b_ 31 ALGISLLGIIGYIIH 45 (56)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334456677777644
No 7
>d2fufa1 d.89.1.1 (A:131-256) The origin DNA-binding domain of SV40 T-antigen {Simian virus 40, Sv40 [TaxId: 10633]}
Probab=1.42 E-value=4.1e+02 Score=19.09 Aligned_cols=9 Identities=33% Similarity=0.608 Sum_probs=7.3
Q ss_pred hhcCCCCCc
Q psy14360 411 MKKKKNFNS 419 (471)
Q Consensus 411 M~~p~~f~~ 419 (471)
|++|++||.
T Consensus 2 ~~~P~D~P~ 10 (126)
T d2fufa1 2 VEDPKDFPS 10 (126)
T ss_dssp CCCCSSSCG
T ss_pred CCCcccCcH
Confidence 788888886
No 8
>d1h9aa1 c.2.1.3 (A:1-181,A:413-426) Glucose 6-phosphate dehydrogenase, N-terminal domain {Leuconostoc mesenteroides [TaxId: 1245]}
Probab=1.34 E-value=5.9e+02 Score=19.44 Aligned_cols=23 Identities=13% Similarity=-0.029 Sum_probs=20.0
Q ss_pred hhhhhhhhhhHhhhhhHHHHhhh
Q psy14360 246 GFGILCTYSLQFYVPVAIIWAEL 268 (471)
Q Consensus 246 lvGs~~~~~l~fi~P~l~~l~~~ 268 (471)
+.||++.-..=-++|+++++...
T Consensus 10 IFGaTGDLa~RKL~PAL~~L~~~ 32 (195)
T d1h9aa1 10 FFGGTGDLAKRKLYPSVFNLYKK 32 (195)
T ss_dssp EETTTSHHHHHTHHHHHHHHHHT
T ss_pred EECcccHHHHhHHHHHHHHHHHc
Confidence 56999999999999999998865
No 9
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=1.25 E-value=8.2e+02 Score=14.56 Aligned_cols=36 Identities=11% Similarity=0.297 Sum_probs=19.3
Q ss_pred hhhHHHHHHHHHHHHhhhhhhcccCccccceeeecCC
Q psy14360 136 LNMGSILIIALMLSMGFFGYLKYGENVKGSITLNLSD 172 (471)
Q Consensus 136 ~~~s~~~~~~~Y~~~g~~gY~~fG~~~~~~il~nl~~ 172 (471)
+..+..+..+.-...+.+-|.+=.+. ++.-..++|+
T Consensus 8 ~~~~~~~~~i~i~~~s~~~y~~E~~~-~~~~f~sip~ 43 (57)
T d2h8pc1 8 AGAATVLLVIVLLAGSYLAVLAERGA-PGAQLITYPR 43 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCCCSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC-CCccccccch
Confidence 44444444445555666667664433 3433566665
No 10
>d1qkia1 c.2.1.3 (A:12-199,A:435-449) Glucose 6-phosphate dehydrogenase, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.22 E-value=6.9e+02 Score=19.25 Aligned_cols=24 Identities=13% Similarity=-0.069 Sum_probs=20.9
Q ss_pred hhhhhhhhhhhHhhhhhHHHHhhh
Q psy14360 245 IGFGILCTYSLQFYVPVAIIWAEL 268 (471)
Q Consensus 245 slvGs~~~~~l~fi~P~l~~l~~~ 268 (471)
=+.||.+.-.-=-++|+++++...
T Consensus 24 VIFGatGDLA~RKL~PALf~L~~~ 47 (203)
T d1qkia1 24 IIMGASGDLAKKKIYPTIWWLFRD 47 (203)
T ss_dssp EEETTTSHHHHHTHHHHHHHHHHT
T ss_pred EEECcccHHHHhHHHHHHHHHHHc
Confidence 467999999999999999988865
Done!