RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14360
(471 letters)
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein.
This transmembrane region is found in many amino acid
transporters including UNC-47 and MTR. UNC-47 encodes a
vesicular amino butyric acid (GABA) transporter, (VGAT).
UNC-47 is predicted to have 10 transmembrane domains.
MTR is a N system amino acid transporter system protein
involved in methyltryptophan resistance. Other members
of this family include proline transporters and amino
acid permeases.
Length = 406
Score = 122 bits (307), Expect = 1e-30
Identities = 64/250 (25%), Positives = 106/250 (42%), Gaps = 16/250 (6%)
Query: 4 IITQLGFCCVYFVFVA----QSSHQICLALDIDYKLHYHMAIMLAPILFTAMIRNLKYIA 59
++ G C Y +F I L Y + I + + I NL ++
Sbjct: 93 LVNLFGVCISYLIFAGDNLPAIFDSFFDTCHI--SLVYFIIIFGLIFIPLSFIPNLSALS 150
Query: 60 PISAVANLIMGLGIAAIYY---YILQDLPPVSTR--NYVGHIQQIPLFFGTVIFAFEGIA 114
+S VA + + + + V + + ++ L G ++FAFEG A
Sbjct: 151 ILSLVAAVSSLYIVILVLSVAELGVLTAQGVGSLGAKTNIKLARLFLAIGIIVFAFEGHA 210
Query: 115 LVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGSITLNLSDRK 174
++LP+Q MK F + VL I++ L + +G GYL +G NVKG+I LNL K
Sbjct: 211 VLLPIQNTMKSPSKFKAMTKVLLTAIIIVTVLYILVGLVGYLAFGNNVKGNILLNLP--K 268
Query: 175 DDPLALVVVGSIGFGILCTYSLQFYVPVAIIWAELEEKYGPFKHPAFGET---ILRVSLV 231
D L + + +L +Y LQ + I+ L K KH + ++R LV
Sbjct: 269 SDWLIDIANLLLVLHLLLSYPLQAFPIRQIVENLLFRKGASGKHNPKSKLLRVVIRSGLV 328
Query: 232 LLTCKLALVV 241
++T +A+ V
Sbjct: 329 VITYLIAISV 338
Score = 88.5 bits (220), Expect = 5e-19
Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 5/146 (3%)
Query: 318 DIDYKLHYHMAIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYY---YILQDLPP 374
L Y + I + + I NL ++ +S VA + + + +
Sbjct: 121 TCHISLVYFIIIFGLIFIPLSFIPNLSALSILSLVAAVSSLYIVILVLSVAELGVLTAQG 180
Query: 375 VSTR--NYVGHIQQIPLFFGTVIFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILII 432
V + + ++ L G ++FAFEG A++LP+Q MK F + VL I++
Sbjct: 181 VGSLGAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMKSPSKFKAMTKVLLTAIIIVT 240
Query: 433 ALMLSMGFFGYLKYGENVKGSITLNL 458
L + +G GYL +G NVKG+I LNL
Sbjct: 241 VLYILVGLVGYLAFGNNVKGNILLNL 266
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and
metabolism].
Length = 415
Score = 40.7 bits (96), Expect = 0.001
Identities = 25/179 (13%), Positives = 56/179 (31%), Gaps = 10/179 (5%)
Query: 1 MFVIITQLGFCCVYFVFVAQSSHQICLALDIDYKLHYHMAIML--APILFTAMIRN---L 55
+ G Y V + L + ++ + F + + L
Sbjct: 92 LSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNPLPRKLGSLIFALVLAFLSWLGTLAVL 151
Query: 56 KYIAPISAVANLIMGLGIAAIYYYILQDLPPVSTRNYVGHIQQ--IPLFFGTVIFAFEGI 113
K + + ++ L + +Y + + + L +F+F
Sbjct: 152 KITSLLVFG--KVIYLVLLVVYLIPHWNPANLFALPSASQSFWKYLLLAIPVFVFSFGFH 209
Query: 114 ALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGSITLNLSD 172
+ L M+K + +GS++ + L + +GFF + +G V G+I
Sbjct: 210 GNIPSLVNYMRKNSKKAVRK-AILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQ 267
Score = 39.9 bits (94), Expect = 0.002
Identities = 23/135 (17%), Positives = 51/135 (37%), Gaps = 5/135 (3%)
Query: 328 AIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYILQDLPPVSTRNYVGHIQQ- 386
A++LA + + + LK + + ++ L + +Y + +
Sbjct: 136 ALVLAFLSWLGTLAVLKITSLLVFG--KVIYLVLLVVYLIPHWNPANLFALPSASQSFWK 193
Query: 387 -IPLFFGTVIFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLK 445
+ L +F+F + L M+K + +GS++ + L + +GFF +
Sbjct: 194 YLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRK-AILIGSLIALVLYILVGFFVFGC 252
Query: 446 YGENVKGSITLNLSD 460
+G V G+I
Sbjct: 253 FGSLVFGNILAAKEQ 267
>gnl|CDD|182651 PRK10692, PRK10692, hypothetical protein; Provisional.
Length = 92
Score = 29.2 bits (66), Expect = 1.3
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 62 SAVANLIMGLG----IAAIYYYILQDLPPVSTRNYVGHIQQIPLFFGTVI 107
S + N++MGLG + + Y IL LP ++ + H + +F G ++
Sbjct: 7 SLLGNVLMGLGLVVMVVGVGYSILNQLPQLNLPQFFAHGALLSIFVGALL 56
Score = 29.2 bits (66), Expect = 1.3
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 350 SAVANLIMGLG----IAAIYYYILQDLPPVSTRNYVGHIQQIPLFFGTVI 395
S + N++MGLG + + Y IL LP ++ + H + +F G ++
Sbjct: 7 SLLGNVLMGLGLVVMVVGVGYSILNQLPQLNLPQFFAHGALLSIFVGALL 56
>gnl|CDD|227342 COG5009, MrcA, Membrane carboxypeptidase/penicillin-binding
protein [Cell envelope biogenesis, outer membrane].
Length = 797
Score = 30.4 bits (69), Expect = 2.9
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 51 MIRNLKYIAPISAVANLIMGLGIAAIYYYILQDLPPVST 89
M++ +KY+ I L+ +A +Y YI DLP V T
Sbjct: 1 MMKLIKYLLGILVTLILLGAGALAGLYLYISPDLPDVET 39
Score = 30.4 bits (69), Expect = 2.9
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 339 MIRNLKYIAPISAVANLIMGLGIAAIYYYILQDLPPVST 377
M++ +KY+ I L+ +A +Y YI DLP V T
Sbjct: 1 MMKLIKYLLGILVTLILLGAGALAGLYLYISPDLPDVET 39
>gnl|CDD|232940 TIGR00361, ComEC_Rec2, DNA internalization-related competence
protein ComEC/Rec2. Apparant orthologs are found in 5
species so far (Haemophilus influenzae, Escherichia
coli, Bacillus subtilis, Neisseria gonorrhoeae,
Streptococcus pneumoniae), of which all but E. coli are
model systems for the study of competence for natural
transformation. This protein is a predicted multiple
membrane-spanning protein likely to be involved in DNA
internalization. In a large number of bacterial species
not known to exhibit competence, this protein is
replaced by a half-length N-terminal homolog of unknown
function, modelled by the related model ComEC_N-term.
The role for this protein in species that are not
naturally transformable is unknown [Cellular processes,
DNA transformation].
Length = 662
Score = 29.5 bits (66), Expect = 4.4
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Query: 298 IPDEIWSVVTITAVQICLALDIDYKLHYHMAIMLAPILFTAMIRNLKYIAP---ISAVAN 354
+ E+ ++ T LA+ LH I LA LF +IR + P I A
Sbjct: 144 VEKEVLTIYQKTGTAHLLAIS---GLH----IGLAAGLFYILIRLGQIFLPGRIIHEKAP 196
Query: 355 LIMGLGIAAIYYYILQDLPPV 375
L++GL A +Y + PPV
Sbjct: 197 LLLGLFCAPLYAMLTGAAPPV 217
>gnl|CDD|119282 pfam10762, DUF2583, Protein of unknown function (DUF2583). Some
members in this family of proteins are annotated as YchH
however currently no function is known.
Length = 89
Score = 27.4 bits (61), Expect = 4.4
Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 61 ISAVANLIMGLG----IAAIYYYILQDLPPVSTRNYVGHIQQIPLFFGTVIF 108
+ + N++MGLG + + Y IL +P + + H + +F G +++
Sbjct: 6 AAILGNVLMGLGLVTMVVGVGYSILAQVPQFNLPQFFAHGALLSIFVGALLW 57
Score = 27.4 bits (61), Expect = 4.4
Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 349 ISAVANLIMGLG----IAAIYYYILQDLPPVSTRNYVGHIQQIPLFFGTVIF 396
+ + N++MGLG + + Y IL +P + + H + +F G +++
Sbjct: 6 AAILGNVLMGLGLVTMVVGVGYSILAQVPQFNLPQFFAHGALLSIFVGALLW 57
>gnl|CDD|240313 PTZ00206, PTZ00206, amino acid transporter; Provisional.
Length = 467
Score = 28.3 bits (63), Expect = 9.8
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Query: 138 MGSILIIALMLSMGFFGYLKYGENVKGSITLNLSDRKDDPLALVVVGSIG 187
MG + ++ + FFGY+ +G NV GS+ L + D ++P ++VG +G
Sbjct: 298 MGMCFTMYVLTA--FFGYMDFGRNVTGSVLL-MYDPVNEP--AIMVGFVG 342
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.328 0.144 0.433
Gapped
Lambda K H
0.267 0.0757 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 25,230,713
Number of extensions: 2619141
Number of successful extensions: 3745
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3698
Number of HSP's successfully gapped: 154
Length of query: 471
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 371
Effective length of database: 6,502,202
Effective search space: 2412316942
Effective search space used: 2412316942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (27.2 bits)