RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14360
(471 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.3 bits (91), Expect = 0.003
Identities = 48/350 (13%), Positives = 98/350 (28%), Gaps = 124/350 (35%)
Query: 146 LMLSMGFF--GYLKYGENVKGSITLNLSDRKDDPLALVVVGSIGFGILCTYSLQFYVPVA 203
L L + F YL+ G ++ ++ L +++ LV + ++ Y+
Sbjct: 84 LNLCLTEFENCYLE-GNDIH-ALAAKLL--QENDTTLVKTKEL---------IKNYITAR 130
Query: 204 IIWAELEEKYGP---FKHPAFGETILRVSLVLLTCKLALVVVGSIGFGILCTYSLQFYVP 260
I+ +K F+ G +L + G G G Y
Sbjct: 131 IMAKRPFDKKSNSALFRAVGEGNA-----------QLVAIF-G--GQGNTDDY------- 169
Query: 261 VAIIWAELEE---KYGPFKHPAF------------VPASSPSLSGTG-------KNQQTI 298
+ EL + Y + + G +N
Sbjct: 170 ----FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNT 225
Query: 299 PDEIW------SVVTITAVQICLALDIDYKLHYHMA---IMLAPILFTAMIRNLKYIAPI 349
PD+ + S I +Q+ HY + + P + ++
Sbjct: 226 PDKDYLLSIPISCPLIGVIQLA---------HYVVTAKLLGFTPGELRSYLKGA-----T 271
Query: 350 SAVANLIMGLGIAA----------------IYYYI---------LQDLPPVSTRNYVGHI 384
L+ + IA + ++I LPP + + +
Sbjct: 272 GHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN 331
Query: 385 QQIPLFFGTVIFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIAL 434
+ +P + + + + +Q + K NS L G + I+L
Sbjct: 332 EGVP----SPMLSISNLTQE-QVQDYVNK---TNSH---LPAGKQVEISL 370
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.2 bits (80), Expect = 0.046
Identities = 46/291 (15%), Positives = 84/291 (28%), Gaps = 104/291 (35%)
Query: 202 VAIIWAELEE---KYGPFKHPAFG--ETILRVSLVLLT------CKLALVV----VGSIG 246
++II + + + +KH TI+ SL +L L V I
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA-HIP 388
Query: 247 FGILCTYSLQFYVPVAIIWAELEE-----------KYG-----PFKHPAFVPASSPSLSG 290
+L +IW ++ + KY P + +P+ L
Sbjct: 389 TILLS-----------LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437
Query: 291 TGKNQQTIPDEIWSVVTITAVQICLALDIDYKL----------H--YHMAIMLAP---IL 335
+N+ + I + I D D + H +H+ + P L
Sbjct: 438 KLENEYALHRSI-----VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492
Query: 336 FTAMIRNLKYI-APISAVANLIMGLGIAAIYYYILQDLPPVSTRNYVGHIQ-QIPLFFGT 393
F + + +++ I + G LQ L + Y +I P +
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNASGSIL---NTLQQL-----KFYKPYICDNDPKY--- 541
Query: 394 VIFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILI---------IALM 435
+R + +F + + LI IALM
Sbjct: 542 --------------ERLVNAILDF-----LPKIEENLICSKYTDLLRIALM 573
Score = 30.2 bits (67), Expect = 1.7
Identities = 66/453 (14%), Positives = 143/453 (31%), Gaps = 124/453 (27%)
Query: 78 YYILQDLPPVSTRNYVGHIQQIP-------LFFGTVI---------FAFEGIA-----LV 116
+ + ++ + HI F T++ F E + L+
Sbjct: 36 KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM 95
Query: 117 LPLQREMKKK----KNFNSSFGVL-NMGSILIIALMLSMGFFGYLKYGENV---KGSITL 168
P++ E ++ + + L N + KY NV + + L
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA-------------KY--NVSRLQPYLKL 140
Query: 169 NLSDRKDDPLALVVV-GSIGFG-------ILCTYSLQFYVPVAIIWAELEEKYGPFKHPA 220
+ + P V++ G +G G + +Y +Q + I W L+ P
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP----- 195
Query: 221 FGETILRVSLVLLTCKLALVVVGSIGFGILCTYSLQFYVPVAIIWAELEEKYGPFKHPAF 280
ET+L + L L ++ + +S + + I AEL K +
Sbjct: 196 --ETVLEM-LQKLLYQI------DPNWTSRSDHSSNIKLRIHSIQAELRRL---LKSKPY 243
Query: 281 VPASSPSLSGTGKNQQTIPDEIWSVVTITAVQI-C----------LALDIDYKLHYHMAI 329
+N + + + A + C + + H+++
Sbjct: 244 ------------ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 330 MLAPILFT-AMIRNL--KYIA------PISAVAN--LIMGLGIAAIYYYILQDLPPVSTR 378
+ T +++L KY+ P + + + IA ++D +T
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI-IAE----SIRDGL--ATW 344
Query: 379 NYVGHIQQIPLFFGTVIFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSM 438
+ H+ L T+I + + ++ P E +K F+ V S I ++LS+
Sbjct: 345 DNWKHVNCDKL--TTIIESS--LNVLEP--AEY--RKMFD-RLSVFPP-SAHIPTILLSL 394
Query: 439 GFFGYLKYGEN---VKGSITLNLSDRKDDPLGY 468
+ + + V +L +++
Sbjct: 395 -IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI 426
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump,
membrane protein, Na ubiquinone, cytoplasmic membrane;
HET: LFA CA7; 3.00A {Escherichia coli}
Length = 184
Score = 31.4 bits (72), Expect = 0.35
Identities = 9/79 (11%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Query: 40 AIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYILQDLPPVSTRNYVGHIQQI 99
+M+ + + + + +++ P + I+ + + Y + + + +
Sbjct: 70 VVMMLNLGGSEIEQERQWLKPQVWIGPAILSAIMLVVIVYAILGVNDQGIDGTPISAKAV 129
Query: 100 -PLFFGTVIFAFEGIALVL 117
FG + A E +++L
Sbjct: 130 GITLFGPYVLAVELASMLL 148
Score = 31.4 bits (72), Expect = 0.35
Identities = 9/79 (11%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Query: 328 AIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYILQDLPPVSTRNYVGHIQQI 387
+M+ + + + + +++ P + I+ + + Y + + + +
Sbjct: 70 VVMMLNLGGSEIEQERQWLKPQVWIGPAILSAIMLVVIVYAILGVNDQGIDGTPISAKAV 129
Query: 388 -PLFFGTVIFAFEGIALVL 405
FG + A E +++L
Sbjct: 130 GITLFGPYVLAVELASMLL 148
>1ukc_A ESTA, esterase; fungi, A/B hydrolase fold, acetylcholinesterase, H;
HET: NAG MAN; 2.10A {Aspergillus niger} SCOP: c.69.1.17
Length = 522
Score = 30.0 bits (68), Expect = 2.0
Identities = 10/60 (16%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 48 FTAMIRNLKYIAPISAVANLIMGLGIAAIYYYILQDLPPVSTRNYVG--HIQQIPLFFGT 105
+A + + P + VA+ +++ Y + + + +G H ++P FG
Sbjct: 375 SSAAYGDATFTCPGNHVASSAARYLPNSVWNYRVNIIDESNIAGGIGVPHTFELPAIFGA 434
Score = 30.0 bits (68), Expect = 2.0
Identities = 10/60 (16%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 336 FTAMIRNLKYIAPISAVANLIMGLGIAAIYYYILQDLPPVSTRNYVG--HIQQIPLFFGT 393
+A + + P + VA+ +++ Y + + + +G H ++P FG
Sbjct: 375 SSAAYGDATFTCPGNHVASSAARYLPNSVWNYRVNIIDESNIAGGIGVPHTFELPAIFGA 434
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 2.7
Identities = 9/22 (40%), Positives = 10/22 (45%), Gaps = 5/22 (22%)
Query: 54 NLKYIAPISAVANLIMGLGIAA 75
+LK A SA A L I A
Sbjct: 28 SLKLYADDSAPA-----LAIKA 44
Score = 28.8 bits (63), Expect = 2.7
Identities = 9/22 (40%), Positives = 10/22 (45%), Gaps = 5/22 (22%)
Query: 342 NLKYIAPISAVANLIMGLGIAA 363
+LK A SA A L I A
Sbjct: 28 SLKLYADDSAPA-----LAIKA 44
Score = 28.4 bits (62), Expect = 2.8
Identities = 5/23 (21%), Positives = 11/23 (47%), Gaps = 5/23 (21%)
Query: 267 ELEEKYGPFKHPAFVPASSPSLS 289
+L+ K + S+P+L+
Sbjct: 24 KLQ---ASLK--LYADDSAPALA 41
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.144 0.433
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,431,532
Number of extensions: 466125
Number of successful extensions: 994
Number of sequences better than 10.0: 1
Number of HSP's gapped: 988
Number of HSP's successfully gapped: 30
Length of query: 471
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 374
Effective length of database: 3,993,456
Effective search space: 1493552544
Effective search space used: 1493552544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (26.7 bits)