Query psy14361
Match_columns 223
No_of_seqs 178 out of 1007
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 17:57:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14361.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14361hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 97.4 8.1E-05 2.8E-09 55.0 3.2 67 71-140 37-104 (110)
2 2i68_A Protein EMRE; transmemb 97.2 9E-05 3.1E-09 57.0 1.1 65 71-138 37-102 (137)
3 4dve_A Biotin transporter BIOY 10.7 83 0.0029 24.9 1.1 77 56-140 9-88 (198)
4 1ifp_A PF3 inovirus, major coa 8.5 3.3E+02 0.011 15.5 3.0 25 144-168 19-43 (44)
5 1oks_A RNA polymerase alpha su 6.8 2.1E+02 0.007 17.8 1.4 11 90-100 38-48 (56)
6 3b9w_A Ammonium transporter fa 4.3 1.7E+03 0.058 19.3 11.8 35 99-137 217-251 (407)
7 3tlw_A GLR4197 protein, GLIC; 3.4 1.3E+03 0.045 18.5 4.7 12 61-72 296-307 (321)
8 1jr5_A 10 kDa anti-sigma facto 2.8 4.9E+02 0.017 17.8 1.0 30 70-101 34-63 (90)
9 1tzs_X 23-MER peptide from PEL 2.7 6.8E+02 0.023 12.9 1.3 13 206-218 4-16 (26)
10 1l4t_A Gastrin/cholecystokinin 2.5 6.1E+02 0.021 13.6 1.0 6 89-94 21-26 (30)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.42 E-value=8.1e-05 Score=54.96 Aligned_cols=67 Identities=13% Similarity=0.034 Sum_probs=59.9
Q ss_pred HhhhhhhhHhhhhhhhhhhHHHHHHH-hhhhHHHHHHHHHHhhccccchhhhhhhheecceeeeeeeeeec
Q psy14361 71 GIASGLDVGFSQWGLRSIAVSLYTMT-KSTSVVFILIFSLVFQLEKKSRKRLRLYGESNPGTSGLVMFTYK 140 (223)
Q Consensus 71 si~~~~~i~l~N~sl~~vsvs~~qm~-Ks~~pi~v~l~~~~~~~e~~s~~~~~~~~~l~~i~~Gv~l~~~~ 140 (223)
.+++.++..+-+.++++.|+|....+ .+..|+++.++++++++|+++ +.+.+.+.+|+.|+.+....
T Consensus 37 ~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s---~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLD---LPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHHHHHhcC
Confidence 34678888899999999999999888 999999999999999999999 88899999999999775443
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.17 E-value=9e-05 Score=56.99 Aligned_cols=65 Identities=14% Similarity=0.045 Sum_probs=46.2
Q ss_pred HhhhhhhhHhhhhhhhhhhHHHHHHH-hhhhHHHHHHHHHHhhccccchhhhhhhheecceeeeeeeee
Q psy14361 71 GIASGLDVGFSQWGLRSIAVSLYTMT-KSTSVVFILIFSLVFQLEKKSRKRLRLYGESNPGTSGLVMFT 138 (223)
Q Consensus 71 si~~~~~i~l~N~sl~~vsvs~~qm~-Ks~~pi~v~l~~~~~~~e~~s~~~~~~~~~l~~i~~Gv~l~~ 138 (223)
.++++++..+-+.+++++|++....+ .+..|++++++++++++|+++ +..++.+++|++||.+..
T Consensus 37 i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls---~~~~~Gi~LIi~GV~ll~ 102 (137)
T 2i68_A 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLD---LPAIIGMMLICAGVLIIN 102 (137)
T ss_dssp HHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHHHHHh
Confidence 33688888999999999999987777 999999999999999999999 888888888888876643
No 3
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=10.68 E-value=83 Score=24.91 Aligned_cols=77 Identities=8% Similarity=0.020 Sum_probs=48.2
Q ss_pred cccchHHHHHHHHHHHhhhhhhhHhhhhh---hhhhhHHHHHHHhhhhHHHHHHHHHHhhccccchhhhhhhheecceee
Q psy14361 56 VLLCWHNQLHKIAPTGIASGLDVGFSQWG---LRSIAVSLYTMTKSTSVVFILIFSLVFQLEKKSRKRLRLYGESNPGTS 132 (223)
Q Consensus 56 ~~~~~~~~~~~~lplsi~~~~~i~l~N~s---l~~vsvs~~qm~Ks~~pi~v~l~~~~~~~e~~s~~~~~~~~~l~~i~~ 132 (223)
..++.++..|.+.-++++.++-.+++..+ +-+.||++ ......+++.+.+++.|+=. ....+=+++..+
T Consensus 9 ~am~~~~k~r~l~~~alfaAliavla~i~~Ipip~~pVPi-----TlQtl~V~LaG~~LG~r~G~---lsv~lYlllG~~ 80 (198)
T 4dve_A 9 HAMTNNQKVKTLTYSAFMTAFIIILGFLPGIPIGFIPVPI-----ILQNMGIMMAGGLLGPKYGT---ISVGAFLALALI 80 (198)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHTTSCCBCCSSSSCCB-----CSTHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcCc-----cHHHHHHHHHHHHHChhHHH---HHHHHHHHHHHH
Confidence 34556556788888888888887777653 44444443 35667888888888877644 443333444555
Q ss_pred eeeeeeec
Q psy14361 133 GLVMFTYK 140 (223)
Q Consensus 133 Gv~l~~~~ 140 (223)
|+=+++-+
T Consensus 81 GlPVFagg 88 (198)
T 4dve_A 81 GLPVLTGG 88 (198)
T ss_dssp TCCCBTTT
T ss_pred cCccccCC
Confidence 66555433
No 4
>1ifp_A PF3 inovirus, major coat protein assembly; virus coat protein, helical virus; 3.10A {Pseudomonas phage PF3} SCOP: h.1.4.1
Probab=8.55 E-value=3.3e+02 Score=15.47 Aligned_cols=25 Identities=36% Similarity=0.710 Sum_probs=17.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH
Q psy14361 144 FNWLGFSLVLLASFSSGLRWTLAQF 168 (223)
Q Consensus 144 ~~~~G~~l~l~s~~~~al~~v~~q~ 168 (223)
...+|=.+..++...-++||+-.|.
T Consensus 19 ittiggaiivlaavvlgirwikaqf 43 (44)
T 1ifp_A 19 ITTIGGAIIVLAAVVLGIRWIKAQF 43 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeecchhHHHHHHHHHhHHhHhhc
Confidence 3456666677777788899987663
No 5
>1oks_A RNA polymerase alpha subunit; transferase, RNA-directed RNA polymerase, nucleocapsid, phosphorylation.; HET: NHE; 1.8A {Measles virus} SCOP: a.8.5.1 PDB: 1t6o_A 2k9d_A
Probab=6.77 E-value=2.1e+02 Score=17.75 Aligned_cols=11 Identities=9% Similarity=-0.028 Sum_probs=8.0
Q ss_pred HHHHHHHhhhh
Q psy14361 90 VSLYTMTKSTS 100 (223)
Q Consensus 90 vs~~qm~Ks~~ 100 (223)
--||||+|+..
T Consensus 38 ~eF~qMl~~I~ 48 (56)
T 1oks_A 38 AKFHQMLVKII 48 (56)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 36899988753
No 6
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=4.29 E-value=1.7e+03 Score=19.28 Aligned_cols=35 Identities=14% Similarity=0.160 Sum_probs=17.5
Q ss_pred hhHHHHHHHHHHhhccccchhhhhhhheecceeeeeeee
Q psy14361 99 TSVVFILIFSLVFQLEKKSRKRLRLYGESNPGTSGLVMF 137 (223)
Q Consensus 99 ~~pi~v~l~~~~~~~e~~s~~~~~~~~~l~~i~~Gv~l~ 137 (223)
..-+..++++++..++|++ . ..+.-..+.++|++.
T Consensus 217 ag~l~~~~~~~~~~~gK~~---~-~~~~nG~LAGLVAIT 251 (407)
T 3b9w_A 217 GATLATYFLSALFHKGKAS---I-VDMANAALAGGVAIG 251 (407)
T ss_dssp HHHHHHHHHHHHHTTTCCC---H-HHHHHHTTHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCC---H-HHHHHhhhhhhheec
Confidence 3334444455554556665 4 334444555555554
No 7
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...
Probab=3.41 E-value=1.3e+03 Score=18.54 Aligned_cols=12 Identities=8% Similarity=-0.042 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHh
Q psy14361 61 HNQLHKIAPTGI 72 (223)
Q Consensus 61 ~~~~~~~lplsi 72 (223)
..|.|.++|+++
T Consensus 296 p~w~r~~fp~~f 307 (321)
T 3tlw_A 296 TRASRIAFPVVF 307 (321)
T ss_dssp HHHHHHHHHHHH
T ss_pred ChhheeeehHHH
Confidence 346778888765
No 8
>1jr5_A 10 kDa anti-sigma factor; all-alpha, helix-turn-helix, coiled-coil, transcription; NMR {Enterobacteria phage T4} SCOP: a.150.1.1 PDB: 1tkv_A 1tl6_A 1tlh_A
Probab=2.76 E-value=4.9e+02 Score=17.82 Aligned_cols=30 Identities=10% Similarity=0.095 Sum_probs=24.7
Q ss_pred HHhhhhhhhHhhhhhhhhhhHHHHHHHhhhhH
Q psy14361 70 TGIASGLDVGFSQWGLRSIAVSLYTMTKSTSV 101 (223)
Q Consensus 70 lsi~~~~~i~l~N~sl~~vsvs~~qm~Ks~~p 101 (223)
++++.-+.+ ..-+......||.||.|..++
T Consensus 34 IaFLNElG~--t~~G~~~t~~sfr~m~~~lt~ 63 (90)
T 1jr5_A 34 IAFLNEIGV--THEGRKLNQNSFRKIVSELTQ 63 (90)
T ss_dssp HHHHHHHTC--CSSSSCCCSHHHHHHHHTCCH
T ss_pred HHHHHHcCC--CCCcchhHHHHHHHHHHHCCH
Confidence 666666666 777999999999999998875
No 9
>1tzs_X 23-MER peptide from PELB-IGG kappa light chain fusion protein; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=2.67 E-value=6.8e+02 Score=12.90 Aligned_cols=13 Identities=8% Similarity=-0.215 Sum_probs=7.9
Q ss_pred HHhHHHHHHHHHH
Q psy14361 206 HVQPWMIVSILPF 218 (223)
Q Consensus 206 y~sp~s~~~ll~~ 218 (223)
.+.|+++-.|+.+
T Consensus 4 li~piAaGLLLa~ 16 (26)
T 1tzs_X 4 LLPTAAAGLLLLA 16 (26)
T ss_pred hhhhHHHHHHHHh
Confidence 4567676666544
No 10
>1l4t_A Gastrin/cholecystokinin type B receptor; hormone/growth factor receptor; NMR {Synthetic} SCOP: j.82.1.1
Probab=2.51 E-value=6.1e+02 Score=13.55 Aligned_cols=6 Identities=17% Similarity=0.368 Sum_probs=2.3
Q ss_pred hHHHHH
Q psy14361 89 AVSLYT 94 (223)
Q Consensus 89 svs~~q 94 (223)
+++|.|
T Consensus 21 ~IsFih 26 (30)
T 1l4t_A 21 PISFIH 26 (30)
T ss_dssp CHHHHH
T ss_pred cchhhh
Confidence 333433
Done!