Query psy14361
Match_columns 223
No_of_seqs 178 out of 1007
Neff 7.5
Searched_HMMs 13730
Date Fri Aug 16 17:57:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14361.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/14361hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1oksa_ a.8.5.1 (A:) RNA polym 5.0 1.3E+02 0.0097 16.9 1.3 10 90-99 37-46 (54)
2 d1p7ba2 f.14.1.1 (A:36-151) In 4.3 4.4E+02 0.032 16.3 4.5 30 11-40 74-103 (116)
3 d1tlha_ a.150.1.1 (A:) Anti-si 3.3 1.7E+02 0.012 18.3 0.8 31 70-102 33-63 (89)
4 d2j8cl1 f.26.1.1 (L:1-281) L ( 2.6 1E+03 0.076 17.6 5.4 44 144-187 172-215 (281)
5 d1jb0i_ f.23.17.1 (I:) Subunit 2.4 4.8E+02 0.035 13.3 3.3 30 81-110 3-32 (38)
6 d2r6gf1 e.70.1.1 (F:13-260) Ma 2.0 1.2E+03 0.085 16.7 5.4 44 70-117 8-51 (248)
7 d2i5nl1 f.26.1.1 (L:1-273) L ( 2.0 1.3E+03 0.091 17.0 5.5 44 144-187 172-215 (273)
8 d1r5sa_ f.50.1.1 (A:) Gap junc 1.9 2.5E+02 0.019 18.2 0.3 10 18-27 81-90 (132)
9 d1eysl_ f.26.1.1 (L:) L (light 1.9 1.3E+03 0.095 17.0 5.3 44 144-187 180-223 (280)
10 d1uptb_ a.193.1.1 (B:) Golgi a 1.9 5.6E+02 0.041 14.5 1.8 16 159-174 6-21 (58)
No 1
>d1oksa_ a.8.5.1 (A:) RNA polymerase alpha subunit {Measles virus [TaxId: 11234]}
Probab=4.98 E-value=1.3e+02 Score=16.94 Aligned_cols=10 Identities=10% Similarity=0.029 Sum_probs=7.4
Q ss_pred HHHHHHHhhh
Q psy14361 90 VSLYTMTKST 99 (223)
Q Consensus 90 vs~~qm~Ks~ 99 (223)
--||||+|..
T Consensus 37 ~eF~QMl~~I 46 (54)
T d1oksa_ 37 AKFHQMLVKI 46 (54)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3588998864
No 2
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}
Probab=4.30 E-value=4.4e+02 Score=16.26 Aligned_cols=30 Identities=10% Similarity=-0.017 Sum_probs=17.3
Q ss_pred cccCCCCCccccCchHHHHHHHHHHHHHHH
Q psy14361 11 EQDNSSDYRWIYKYPLSIVVCHLVFKFLVA 40 (223)
Q Consensus 11 ~~~~~~~~~~~F~~P~~lt~~~~~~~~~~~ 40 (223)
+..|+||....=+..-.++.++++++.++.
T Consensus 74 tTvGYGDi~P~t~~~~~~~~~~~~~g~~~~ 103 (116)
T d1p7ba2 74 ATVGYGDMHPQTVYAHAIATLEIFVGMSGI 103 (116)
T ss_dssp TTCCCSCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HhccccccccCCcHHHHHHHHHHHHHHHHH
Confidence 455666655544445566666766665443
No 3
>d1tlha_ a.150.1.1 (A:) Anti-sigma factor AsiA {Bacteriophage T4 [TaxId: 10665]}
Probab=3.30 E-value=1.7e+02 Score=18.34 Aligned_cols=31 Identities=10% Similarity=0.105 Sum_probs=23.4
Q ss_pred HHhhhhhhhHhhhhhhhhhhHHHHHHHhhhhHH
Q psy14361 70 TGIASGLDVGFSQWGLRSIAVSLYTMTKSTSVV 102 (223)
Q Consensus 70 lsi~~~~~i~l~N~sl~~vsvs~~qm~Ks~~pi 102 (223)
++++.=+ ++-+-+..+...||-||.|.+++-
T Consensus 33 I~FLNE~--G~r~~G~eft~~sFrqm~~~Lt~~ 63 (89)
T d1tlha_ 33 IAFLNEI--GVTHEGRKLNQNSFRKIVSELTQE 63 (89)
T ss_dssp HHHHHHT--TCEETTEECCHHHHHHHHHSSCHH
T ss_pred HHHHHHh--CCCcccHHHHHhHHHHHHHHCCHH
Confidence 5555443 344789999999999999998763
No 4
>d2j8cl1 f.26.1.1 (L:1-281) L (light) subunit {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=2.58 E-value=1e+03 Score=17.59 Aligned_cols=44 Identities=9% Similarity=-0.094 Sum_probs=31.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHH
Q psy14361 144 FNWLGFSLVLLASFSSGLRWTLAQFVMQRSDLNMNSKIIIIITQ 187 (223)
Q Consensus 144 ~~~~G~~l~l~s~~~~al~~v~~q~ll~~~~~~~~~~~~~~~~~ 187 (223)
+...|+.....|+++.|+-........+-.++++-++++.++|.
T Consensus 172 fHmlsI~fl~gsaLl~AmHGatIla~~~~g~~~e~~~~~~~~tF 215 (281)
T d2j8cl1 172 AHMIAISFFFTNALALALHGALVLSAANPEKGKEMRTPDHEDTF 215 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCSTTCCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhheeeccCCCCccccChhhhhhh
Confidence 46799999999999999988877766554444444555555554
No 5
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=2.45 E-value=4.8e+02 Score=13.32 Aligned_cols=30 Identities=0% Similarity=-0.027 Sum_probs=20.2
Q ss_pred hhhhhhhhhHHHHHHHhhhhHHHHHHHHHH
Q psy14361 81 SQWGLRSIAVSLYTMTKSTSVVFILIFSLV 110 (223)
Q Consensus 81 ~N~sl~~vsvs~~qm~Ks~~pi~v~l~~~~ 110 (223)
++.+-.|.|.-+.-++--..|..++-+.++
T Consensus 3 G~yAAsyLPwI~iPvv~wl~p~vvMglLFi 32 (38)
T d1jb0i_ 3 GSYAASFLPWIFIPVVCWLMPTVVMGLLFL 32 (38)
T ss_dssp CSSTTTTHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred chhHHHhcchhHHHHHHHHHHHHHHHHHhe
Confidence 345566777777777777777777655543
No 6
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=2.01 E-value=1.2e+03 Score=16.67 Aligned_cols=44 Identities=11% Similarity=-0.072 Sum_probs=22.9
Q ss_pred HHhhhhhhhHhhhhhhhhhhHHHHHHHhhhhHHHHHHHHHHhhccccc
Q psy14361 70 TGIASGLDVGFSQWGLRSIAVSLYTMTKSTSVVFILIFSLVFQLEKKS 117 (223)
Q Consensus 70 lsi~~~~~i~l~N~sl~~vsvs~~qm~Ks~~pi~v~l~~~~~~~e~~s 117 (223)
+|++.++.....-..+..-+..+.- ...+.+.+..+++..||.-
T Consensus 8 l~l~~a~~~~~~~~~~~~~~~~~a~----~~~~~~~~~~~vy~s~r~~ 51 (248)
T d2r6gf1 8 LGLLGLLVGYLVVLMYAQGEYLFAI----TTLILSSAGLYIFANRKAY 51 (248)
T ss_dssp HHHHHHHHHHTHHHHHGGGCHHHHH----HHHHHHHHHHHHHSSSCCT
T ss_pred HHHHHHHHHHHHHHHHHcchHHHHH----HHHHHHHheEEEEEccCcc
Confidence 5555555555555555555544432 3344455556666655544
No 7
>d2i5nl1 f.26.1.1 (L:1-273) L (light) subunit {Rhodopseudomonas viridis [TaxId: 1079]}
Probab=2.00 E-value=1.3e+03 Score=17.01 Aligned_cols=44 Identities=14% Similarity=-0.008 Sum_probs=30.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHH
Q psy14361 144 FNWLGFSLVLLASFSSGLRWTLAQFVMQRSDLNMNSKIIIIITQ 187 (223)
Q Consensus 144 ~~~~G~~l~l~s~~~~al~~v~~q~ll~~~~~~~~~~~~~~~~~ 187 (223)
+...++.....|+++.|+-....-...+-.++++.+.+|-+++.
T Consensus 172 fHmlsI~fl~gsaLl~AmHGatILa~~~~g~~~e~~~~e~~~~F 215 (273)
T d2i5nl1 172 GHMSSVSFLFVNAMALGLHGGLILSVANPGDGDKVKTAEHENQY 215 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCSTTCCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhheeeeecCCCCccccchHHHHHH
Confidence 45789999999999999887776655555444444555666555
No 8
>d1r5sa_ f.50.1.1 (A:) Gap junction alpha-1 protein, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=1.92 E-value=2.5e+02 Score=18.22 Aligned_cols=10 Identities=10% Similarity=0.225 Sum_probs=6.1
Q ss_pred CccccCchHH
Q psy14361 18 YRWIYKYPLS 27 (223)
Q Consensus 18 ~~~~F~~P~~ 27 (223)
+...|+||--
T Consensus 81 HaQ~Fd~pd~ 90 (132)
T d1r5sa_ 81 HAQPFDFPDD 90 (132)
T ss_dssp CCCSCCCTTS
T ss_pred ccccCCCccc
Confidence 4456777754
No 9
>d1eysl_ f.26.1.1 (L:) L (light) subunit {Thermochromatium tepidum [TaxId: 1050]}
Probab=1.92 E-value=1.3e+03 Score=16.99 Aligned_cols=44 Identities=11% Similarity=-0.061 Sum_probs=30.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHH
Q psy14361 144 FNWLGFSLVLLASFSSGLRWTLAQFVMQRSDLNMNSKIIIIITQ 187 (223)
Q Consensus 144 ~~~~G~~l~l~s~~~~al~~v~~q~ll~~~~~~~~~~~~~~~~~ 187 (223)
|...|+.....|+++.|+-....-...+....+..+.+|.+++.
T Consensus 180 FHmLsIaflygsall~AmHGatIla~~~~~~~~~~~~~e~~~~F 223 (280)
T d1eysl_ 180 AHMLAISFFFTNCLALSMHGSLILSVTNPQRGEPVKTSEHENTF 223 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTCCCCCHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHhhhhhheeeecCCCCccccchhHHHHH
Confidence 56899999999999999988776655444433334444555554
No 10
>d1uptb_ a.193.1.1 (B:) Golgi autoantigen, golgin-245 {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.86 E-value=5.6e+02 Score=14.47 Aligned_cols=16 Identities=31% Similarity=0.412 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHhcccc
Q psy14361 159 SGLRWTLAQFVMQRSD 174 (223)
Q Consensus 159 ~al~~v~~q~ll~~~~ 174 (223)
+=+|+++.+.++++.+
T Consensus 6 EYLRnvLfeYMmG~E~ 21 (58)
T d1uptb_ 6 EYLRKVLFEYMMGRET 21 (58)
T ss_dssp HHHHHHHHHHHTTSSH
T ss_pred HHHHHHHHHHHcCcch
Confidence 4578999999988863
Done!