RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14361
(223 letters)
>gnl|CDD|217390 pfam03151, TPT, Triose-phosphate Transporter family. This family
includes transporters with a specificity for triose
phosphate.
Length = 149
Score = 36.4 bits (85), Expect = 0.003
Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 20/76 (26%)
Query: 148 GFSLVLLASFSSGLRWTLAQFVMQRSDLNMNSKIIIIITQFVMQRSDLNMNSPIDMVYHV 207
GF L L AS LR L+Q ++++ +N ++++Y++
Sbjct: 1 GFILALAASALFALRLILSQKLLKKKK-------------------GTKLN-VLELLYYL 40
Query: 208 QPWMIVSILPFAILFE 223
P + +LP + E
Sbjct: 41 SPVAFIVLLPGLLFSE 56
>gnl|CDD|240371 PTZ00343, PTZ00343, triose or hexose phosphate/phosphate
translocator; Provisional.
Length = 350
Score = 31.6 bits (72), Expect = 0.24
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 7/102 (6%)
Query: 89 AVSLYTMTKSTSVVFILIFSLVFQLEKKSRKRLRLYGESNPGTSGLVMFTYKATAFNWLG 148
AVS + K+ VF + S++F K L Y P G+ + + K F WL
Sbjct: 139 AVSFTHVVKAAEPVFTALLSILFL---KQFLNLYAYLSLIPIVGGVALASVKELHFTWLA 195
Query: 149 FSLVLLASFSSGLRWTLAQFVM-QRSDLNMN---SKIIIIIT 186
F +L++ S LR A+ M +S++ N S I +++T
Sbjct: 196 FWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLT 237
>gnl|CDD|238408 cd00789, KU_like, Ku-core domain, Ku-like subfamily; composed of
prokaryotic homologs of the eukaryotic DNA binding
protein Ku. The alignment includes the core domain
shared by the prokaryotic YkoV-like proteins and the
eukaryotic Ku70 and Ku80. The prokaryotic Ku homologs
are predicted to form homodimers. It is proposed that
the Ku homologs are functionally associated with
ATP-dependent DNA ligase and the eukaryotic-type
primase, probably as components of a double-strand break
repair system.
Length = 256
Score = 30.2 bits (69), Expect = 0.73
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 7/39 (17%)
Query: 84 GLRSIAVSLYTMTKSTSVVFILIFSLVFQLEKKSRKRLR 122
GL +I V LY+ T+S + F QL KK R+R
Sbjct: 11 GLVNIPVKLYSATESEDISF-------HQLHKKDGARIR 42
>gnl|CDD|129898 TIGR00817, tpt, Tpt phosphate/phosphoenolpyruvate translocator.
The 6-8 TMS Triose-phosphate Transporter (TPT) Family
(TC 2.A.7.9)Functionally characterized members of the
TPT family are derived from the inner envelope membranes
of chloroplasts and nongreen plastids of plants.
However,homologues are also present in yeast.
Saccharomyces cerevisiae has three functionally
uncharacterized TPT paralogues encoded within its
genome. Under normal physiologicalconditions,
chloroplast TPTs mediate a strict antiport of
substrates, frequently exchanging an organic three
carbon compound phosphate ester for inorganic phosphate
(Pi).Normally, a triose-phosphate, 3-phosphoglycerate,
or another phosphorylated C3 compound made in the
chloroplast during photosynthesis, exits the organelle
into thecytoplasm of the plant cell in exchange for Pi.
However, experiments with reconstituted translocator in
artificial membranes indicate that transport can also
occur by achannel-like uniport mechanism with up to
10-fold higher transport rates. Channel opening may be
induced by a membrane potential of large magnitude
and/or by high substrateconcentrations. Nongreen plastid
and chloroplast carriers, such as those from maize
endosperm and root membranes, mediate transport of C3
compounds phosphorylated atcarbon atom 2, particularly
phosphenolpyruvate, in exchange for Pi. These are the
phosphoenolpyruvate:Pi antiporters (PPT). Glucose-6-P
has also been shown to be asubstrate of some plastid
translocators (GPT). The three types of proteins (TPT,
PPT and GPT) are divergent in sequence as well as
substrate specificity, but their substratespecificities
overlap [Hypothetical proteins, Conserved].
Length = 302
Score = 29.7 bits (67), Expect = 0.99
Identities = 26/129 (20%), Positives = 44/129 (34%), Gaps = 4/129 (3%)
Query: 62 NQLHKIAPTGIASGLDVGFSQWGLRSIAVSLYTMTKSTSVVFILIFSLVFQLEKKSRKRL 121
L + P I + S L +AVS K+ F ++ S F
Sbjct: 63 ALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFL---GQEFPS 119
Query: 122 RLYGESNPGTSGLVMFTYKATAFNWLGFSLVLLASFSSGLRWTLAQFVMQRSDL-NMNSK 180
L+ P G+ + + +FNW GF ++++ + R ++ M L N
Sbjct: 120 TLWLSLLPIVGGVALASDTELSFNWAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLY 179
Query: 181 IIIIITQFV 189
I I
Sbjct: 180 AYISIMSLF 188
>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit
1; Provisional.
Length = 503
Score = 29.9 bits (68), Expect = 1.2
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 191 QRSDLNMNSPIDMVY-HVQPWMIVSIL 216
L SPI +V+ H+ P M+ + L
Sbjct: 45 DSLKLPDKSPI-IVFGHMSPEMLATFL 70
>gnl|CDD|225287 COG2431, COG2431, Predicted membrane protein [Function unknown].
Length = 297
Score = 29.6 bits (67), Expect = 1.3
Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 13/88 (14%)
Query: 78 VGFSQWGLRSIAVSLYTMTKSTSVVFILI--FSLV--FQLEKKSRKRLRLYGESNPGTSG 133
+G S L ++ +L + ++V I+I +LV LE+ R++ E P S
Sbjct: 43 MGISLAVLDNLVSNLVAIALYSAVFIIIILLANLVALALLERLLPWRIKHQQEKLPSRSM 102
Query: 134 LVMFTYKATAFNWLGFSLVLLASFSSGL 161
A + V+L + GL
Sbjct: 103 ---------ALESIKLLGVVLLGLALGL 121
>gnl|CDD|143407 cd07088, ALDH_LactADH-AldA, Escherichia coli lactaldehyde
dehydrogenase AldA-like. Lactaldehyde dehydrogenase
from Escherichia coli (AldA, LactADH, EC=1.2.1.22), an
NAD(+)-dependent enzyme involved in the metabolism of
L-fucose and L-rhamnose, and other similar sequences are
present in this CD.
Length = 468
Score = 29.2 bits (66), Expect = 1.8
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 13 DNSSDYRWIYKYPLSIVVCHLVFKFLVALICRKV 46
D ++ +I+K P+ +V L + F LI RK+
Sbjct: 121 DRPNENIFIFKVPIGVVAGILPWNFPFFLIARKL 154
>gnl|CDD|234485 TIGR04154, archaeo_STT3, oligosaccharyl transferase, archaeosortase
A system-associated. Members of this protein family
occur, one to three members per genome, in the same
species of Euryarchaeota as contain the predicted
protein-sorting enzyme archaeosortase (TIGR04125) and
its cognate protein-sorting signal PGF-CTERM
(TIGR04126).
Length = 815
Score = 28.4 bits (64), Expect = 3.6
Identities = 25/104 (24%), Positives = 36/104 (34%), Gaps = 21/104 (20%)
Query: 61 HNQLHKIAPTGIASGLDVGFSQWGLRSIAVSLYTMTKSTSVVFILIFSLVFQLEKKSRKR 120
+ L K + +G IA+ LY +T +V+F I VF L +
Sbjct: 183 LDTLKKPLAYAVLAG------------IALGLYLLTWPGAVLFAGIV-GVFTLVQFILDL 229
Query: 121 LRLYGESNPGTSGLVMFTYKATAFNWLGFSLVLLASFSSGLRWT 164
R G S + + T+ A LVL F G T
Sbjct: 230 FR--GRSPEYLAIVGAVTFAVAAV------LVLPFGFKLGFSAT 265
>gnl|CDD|178633 PLN03084, PLN03084, alpha/beta hydrolase fold protein; Provisional.
Length = 383
Score = 27.2 bits (60), Expect = 7.0
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 139 YKATAFNWLGFSLVLLASFSSGLRWTLAQFV 169
Y A AF+WLGF G +TL ++V
Sbjct: 154 YHAIAFDWLGFGFSDKPQPGYGFNYTLDEYV 184
>gnl|CDD|218882 pfam06074, DUF935, Protein of unknown function (DUF935). This
family consists of several bacterial proteins of unknown
function as well as the Bacteriophage Mu gp29 protein.
Length = 516
Score = 27.3 bits (61), Expect = 7.1
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Query: 111 FQLEKKSRKRLRLYGESNPGTS----GLVMFTYKATAFNWLGFSLV 152
F+ + + RLR S G V+ +KA + N G L+
Sbjct: 164 FRFDPDNLLRLRTRDNSAEGEPLPPFKFVVHRHKAKSGNPYGLGLL 209
>gnl|CDD|183737 PRK12773, flhB, flagellar biosynthesis protein FlhB; Reviewed.
Length = 646
Score = 27.3 bits (60), Expect = 7.3
Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 13/122 (10%)
Query: 67 IAPTGIASGLDVGFSQWGLRSIAVSLYTMTKSTSVVFILIFSLVFQLEKKSRKRLRLYGE 126
+ PT F +WG +S + SL+ M ++ F +I L F+ KK K +
Sbjct: 162 VHPTSFIFSFLHHFDRWGQKSTSHSLW-MFRTIERFFSIIKKLFFK--KKFSKSFIV--- 215
Query: 127 SNPGTSGLVMFTYKATAFNWLGFSLVLLASFSSGLRWTLAQFVMQRSDLNMNSKIIIIIT 186
G+ +F YK +LG+S + + + L L + +Q +N+ +I+ I
Sbjct: 216 ------GIFLF-YKKIVKKFLGYSEPIDSKLTEFLNSNLFCYFLQFGFINLTIEIVRRIF 268
Query: 187 QF 188
+F
Sbjct: 269 RF 270
>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional.
Length = 793
Score = 27.4 bits (60), Expect = 7.7
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 46 VYELYTHQKRVLLCWHNQLHKIAPTGIASGLDVGFSQWGLRSIAVSLYTMTKSTSV 101
V E+ H+KRV W PT +ASG D G + + VS+ T+ ++
Sbjct: 568 VTEMKEHEKRV---WSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANI 620
>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 27.1 bits (60), Expect = 9.9
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 6/41 (14%)
Query: 141 ATAFNWLGFSLVLL----ASFSSG--LRWTLAQFVMQRSDL 175
A+ + LGFS L + FS G +R LAQ ++ RSDL
Sbjct: 130 ASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDL 170
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.328 0.138 0.424
Gapped
Lambda K H
0.267 0.0719 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,121,133
Number of extensions: 1027623
Number of successful extensions: 1207
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1201
Number of HSP's successfully gapped: 35
Length of query: 223
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 130
Effective length of database: 6,812,680
Effective search space: 885648400
Effective search space used: 885648400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 57 (25.8 bits)