RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy14361
         (223 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 43.5 bits (102), Expect = 3e-05
 Identities = 39/196 (19%), Positives = 59/196 (30%), Gaps = 71/196 (36%)

Query: 12  QDNSSDYRWIYKYPLSIVVCHLVFKFLVALICRKVYELYTHQKRVLLCWH-NQLHKIAPT 70
           Q N+ DY                F+ L     R +Y+ Y      L+ +    L ++  T
Sbjct: 163 QGNTDDY----------------FEEL-----RDLYQTYHVLVGDLIKFSAETLSELIRT 201

Query: 71  GIAS------GLDVGFSQWG-----------LRSIAVSLYTMTKSTSVVFILIFSLVFQL 113
            + +      GL++   +W            L SI +S             LI   V QL
Sbjct: 202 TLDAEKVFTQGLNIL--EWLENPSNTPDKDYLLSIPIS-----------CPLIG--VIQL 246

Query: 114 E--KKSRKRLRL-YGESNP---GTS----GLVMFTYKATAFNWLGF----SLVLLASFSS 159
                + K L    GE      G +    GLV     A   +W  F       +   F  
Sbjct: 247 AHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFI 306

Query: 160 GLRWTLAQFVMQRSDL 175
           G+R          + L
Sbjct: 307 GVR---CYEAYPNTSL 319


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 41.1 bits (95), Expect = 5e-05
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 11/34 (32%)

Query: 114 EKKS-RK---RLRLYG-ESNPGTSGLVMFTYKAT 142
           EK++ +K    L+LY  +S P    L +   KAT
Sbjct: 18  EKQALKKLQASLKLYADDSAP---ALAI---KAT 45


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 29.4 bits (65), Expect = 1.0
 Identities = 27/205 (13%), Positives = 57/205 (27%), Gaps = 58/205 (28%)

Query: 2   ARVVLRNSEEQDNSSDYRWIYKYPLSIVVCHLVFKFLVALICRK---VYELYTHQKRVLL 58
             +V +  EE     +Y+++                 +    R+   +  +Y  Q+  L 
Sbjct: 76  EEMVQKFVEEVLRI-NYKFLMSP--------------IKTEQRQPSMMTRMYIEQRDRL- 119

Query: 59  CWHNQLHKIAPTGIASGLDVGFSQWGLRSIAVSLYTMTKSTSVVFILIFSLVFQLEKKSR 118
             +N     A   ++           LR    +L  +  + +V+                
Sbjct: 120 --YNDNQVFAKYNVSRLQPY----LKLRQ---ALLELRPAKNVL---------------- 154

Query: 119 KRLRLYGESNPGTSGLVMFTYKATAFNWLGFSLVLLASFSSGLRW-TLAQFVMQRSDLNM 177
               + G    G + + +             S  +       + W  L       + L M
Sbjct: 155 ----IDGVLGSGKTWVALDVCL---------SYKVQCKMDFKIFWLNLKNCNSPETVLEM 201

Query: 178 NSKIIIIITQFVMQRSDLNMNSPID 202
             K++  I      RSD + N  + 
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLR 226


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.328    0.138    0.424 

Gapped
Lambda     K      H
   0.267   0.0747    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,243,869
Number of extensions: 174855
Number of successful extensions: 319
Number of sequences better than 10.0: 1
Number of HSP's gapped: 317
Number of HSP's successfully gapped: 7
Length of query: 223
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 133
Effective length of database: 4,188,903
Effective search space: 557124099
Effective search space used: 557124099
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (24.9 bits)