RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14361
         (223 letters)



>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 109

 Score = 24.4 bits (53), Expect = 6.8
 Identities = 14/56 (25%), Positives = 22/56 (39%)

Query: 67  IAPTGIASGLDVGFSQWGLRSIAVSLYTMTKSTSVVFILIFSLVFQLEKKSRKRLR 122
           I   G+ +  DVG  + G+         +  S ++ F LI   V+ L       LR
Sbjct: 34  INRIGVNAQSDVGILRIGIGGGQTIDLNVLLSAAINFFLIAFAVYFLVVLPYNTLR 89


>d1teda_ c.95.1.2 (A:) Polyketide synthase PKS18 {Mycobacterium
           tuberculosis [TaxId: 1773]}
          Length = 372

 Score = 24.8 bits (53), Expect = 8.8
 Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 1/57 (1%)

Query: 117 SRKRLRLYGESNPGTSGLVMFTYKATAFNWLGFSLVLLASFSSGLRWTLAQF-VMQR 172
           S   L  +G     +   V+ T    A +    S  +  +F  G+      F +++R
Sbjct: 316 SWDVLARFGNMLSVSLIFVLETMVQQAESAKAISTGVAFAFGPGVTVEGMLFDIIRR 372


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.138    0.424 

Gapped
Lambda     K      H
   0.267   0.0646    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 795,407
Number of extensions: 33359
Number of successful extensions: 87
Number of sequences better than 10.0: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 4
Length of query: 223
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 141
Effective length of database: 1,281,736
Effective search space: 180724776
Effective search space used: 180724776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (23.6 bits)