Query psy14362
Match_columns 422
No_of_seqs 379 out of 2329
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 17:58:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14362.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14362hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10930 FtsH protease regulat 100.0 1.3E-45 2.8E-50 374.5 33.1 266 149-419 36-338 (419)
2 KOG2621|consensus 100.0 1.4E-38 3.1E-43 297.6 20.0 237 180-416 25-261 (288)
3 PRK11029 FtsH protease regulat 100.0 4.8E-37 1E-41 304.2 30.3 218 200-417 10-308 (334)
4 cd03403 Band_7_stomatin_like B 100.0 6E-37 1.3E-41 287.8 27.8 205 213-419 1-206 (215)
5 TIGR01932 hflC HflC protein. H 100.0 3.2E-36 6.9E-41 298.5 29.9 218 201-418 11-299 (317)
6 cd03405 Band_7_HflC Band_7_Hfl 100.0 7.5E-35 1.6E-39 278.5 27.5 204 210-414 1-240 (242)
7 cd03404 Band_7_HflK Band_7_Hfl 100.0 1.1E-34 2.5E-39 281.2 28.4 183 200-384 5-203 (266)
8 TIGR01933 hflK HflK protein. H 100.0 1.3E-33 2.8E-38 273.1 27.5 206 210-417 1-240 (261)
9 cd03402 Band_7_2 A subgroup of 100.0 5E-34 1.1E-38 268.4 22.2 176 209-386 1-183 (219)
10 cd03407 Band_7_4 A subgroup of 100.0 1.9E-33 4.1E-38 272.1 26.3 167 215-384 1-170 (262)
11 cd03406 Band_7_3 A subgroup of 100.0 1.5E-31 3.2E-36 259.0 27.5 213 207-421 2-280 (280)
12 COG0330 HflC Membrane protease 100.0 2.9E-31 6.3E-36 260.5 29.6 187 198-386 9-202 (291)
13 cd03401 Band_7_prohibitin Band 100.0 3.7E-31 8E-36 245.0 23.6 184 209-393 1-191 (196)
14 smart00244 PHB prohibitin homo 100.0 4E-29 8.8E-34 222.8 20.2 157 208-366 1-159 (160)
15 PF01145 Band_7: SPFH domain / 100.0 3.6E-29 7.8E-34 227.0 11.5 172 211-384 1-179 (179)
16 KOG3090|consensus 100.0 2E-27 4.4E-32 215.3 19.5 218 196-418 24-260 (290)
17 KOG2620|consensus 100.0 2.5E-29 5.3E-34 232.9 7.1 175 211-387 10-187 (301)
18 KOG2621|consensus 99.9 3.8E-24 8.2E-29 200.8 7.5 94 3-98 160-257 (288)
19 KOG3083|consensus 99.9 9.9E-22 2.2E-26 178.4 9.9 210 204-418 21-250 (271)
20 cd03408 Band_7_5 A subgroup of 99.8 5.9E-20 1.3E-24 171.3 17.1 158 207-366 13-206 (207)
21 KOG2962|consensus 99.8 4.8E-17 1E-21 148.6 21.6 167 197-364 10-184 (322)
22 COG2268 Uncharacterized protei 99.7 2E-16 4.4E-21 163.0 22.5 180 208-387 32-235 (548)
23 cd03400 Band_7_1 A subgroup of 99.7 2.3E-16 4.9E-21 135.6 12.3 116 250-366 3-123 (124)
24 cd03399 Band_7_flotillin Band_ 99.7 1.8E-16 3.8E-21 137.1 11.5 115 250-364 2-125 (128)
25 cd02106 Band_7 The band 7 doma 99.6 2.5E-14 5.4E-19 120.5 14.7 115 252-366 4-120 (121)
26 KOG2668|consensus 99.6 4.7E-14 1E-18 136.0 17.7 190 210-403 2-210 (428)
27 cd03403 Band_7_stomatin_like B 99.5 5.1E-14 1.1E-18 132.2 9.9 110 2-120 101-214 (215)
28 KOG2620|consensus 99.5 3.9E-14 8.4E-19 132.2 5.6 82 2-85 114-202 (301)
29 PF13421 Band_7_1: SPFH domain 99.4 1.7E-11 3.7E-16 114.8 18.8 158 208-367 14-207 (211)
30 cd03407 Band_7_4 A subgroup of 99.3 2.1E-11 4.6E-16 118.1 10.0 112 2-123 100-251 (262)
31 COG0330 HflC Membrane protease 99.2 4E-11 8.7E-16 117.8 9.1 111 2-121 129-276 (291)
32 PRK11029 FtsH protease regulat 99.0 1.2E-09 2.6E-14 109.0 10.6 73 2-76 134-250 (334)
33 COG4260 Membrane protease subu 98.9 5.1E-08 1.1E-12 92.5 15.6 160 208-368 39-235 (345)
34 cd03405 Band_7_HflC Band_7_Hfl 98.9 7.6E-09 1.7E-13 98.9 9.6 68 2-71 108-180 (242)
35 TIGR01933 hflK HflK protein. H 98.9 1.1E-08 2.3E-13 99.2 9.9 95 2-98 103-235 (261)
36 TIGR01932 hflC HflC protein. H 98.7 4.4E-08 9.5E-13 97.6 10.1 83 11-98 173-293 (317)
37 cd03406 Band_7_3 A subgroup of 98.6 1.2E-07 2.5E-12 92.6 8.2 79 2-83 113-206 (280)
38 cd03404 Band_7_HflK Band_7_Hfl 98.6 2.7E-07 5.9E-12 89.5 9.6 64 2-67 130-200 (266)
39 cd03401 Band_7_prohibitin Band 98.5 4.8E-07 1E-11 83.6 7.9 78 2-80 109-192 (196)
40 PRK10930 FtsH protease regulat 98.3 1.5E-06 3.2E-11 89.3 8.4 60 2-63 199-265 (419)
41 cd03402 Band_7_2 A subgroup of 98.1 4.6E-06 1E-10 78.8 6.4 70 2-73 104-184 (219)
42 PTZ00491 major vault protein; 98.0 0.00048 1E-08 75.2 18.7 147 210-358 464-643 (850)
43 cd03400 Band_7_1 A subgroup of 97.3 0.00046 9.9E-09 59.0 5.4 48 2-49 70-122 (124)
44 PF01145 Band_7: SPFH domain / 97.2 0.00044 9.6E-09 62.2 5.1 66 2-69 108-178 (179)
45 KOG3090|consensus 96.9 0.0016 3.6E-08 60.4 5.9 91 3-98 146-254 (290)
46 KOG3083|consensus 96.7 0.0013 2.8E-08 61.1 3.3 94 1-98 133-244 (271)
47 PF12221 HflK_N: Bacterial mem 96.5 0.0015 3.2E-08 45.0 1.8 24 149-172 18-41 (42)
48 cd03399 Band_7_flotillin Band_ 96.4 0.0015 3.3E-08 56.1 1.9 48 2-49 75-126 (128)
49 COG1580 FliL Flagellar basal b 96.2 0.32 6.9E-06 43.6 15.6 80 269-354 76-157 (159)
50 cd02106 Band_7 The band 7 doma 94.9 0.042 9.1E-07 45.4 4.8 49 2-50 68-120 (121)
51 PF12127 YdfA_immunity: SigmaW 94.7 0.45 9.7E-06 45.9 11.3 104 255-363 125-229 (316)
52 PF11978 MVP_shoulder: Shoulde 94.2 0.27 5.9E-06 41.4 7.7 92 264-355 11-116 (118)
53 PRK06654 fliL flagellar basal 92.7 2.3 5E-05 38.8 11.9 83 264-354 93-177 (181)
54 PRK13665 hypothetical protein; 92.0 0.79 1.7E-05 44.1 8.3 104 255-363 130-234 (316)
55 PRK12785 fliL flagellar basal 91.6 5.9 0.00013 35.7 13.4 50 302-353 112-163 (166)
56 PRK07718 fliL flagellar basal 89.7 7 0.00015 34.3 11.7 50 302-353 88-139 (142)
57 PRK07021 fliL flagellar basal 86.7 23 0.0005 31.7 15.2 78 269-353 78-159 (162)
58 PRK08455 fliL flagellar basal 86.2 27 0.00059 32.0 13.7 50 302-353 128-179 (182)
59 PRK05696 fliL flagellar basal 84.9 29 0.00064 31.2 13.5 53 301-353 111-167 (170)
60 PF03748 FliL: Flagellar basal 82.0 24 0.00053 28.2 10.5 50 302-353 45-96 (99)
61 PRK05697 flagellar basal body- 66.2 53 0.0012 28.6 9.0 75 274-353 56-134 (137)
62 PRK04057 30S ribosomal protein 50.7 1.1E+02 0.0024 28.6 8.8 82 263-351 101-184 (203)
63 COG2268 Uncharacterized protei 43.2 55 0.0012 35.1 6.2 76 3-80 156-242 (548)
64 PTZ00399 cysteinyl-tRNA-synthe 38.9 2.8E+02 0.0062 30.6 11.1 55 331-385 520-579 (651)
65 smart00244 PHB prohibitin homo 35.4 23 0.0005 30.6 1.7 28 2-29 106-134 (160)
66 COG4864 Uncharacterized protei 33.6 2.3E+02 0.0051 26.8 8.0 88 267-359 141-229 (328)
67 PHA02571 a-gt.4 hypothetical p 28.6 3.5E+02 0.0076 22.6 8.6 59 360-418 20-78 (109)
68 PF01015 Ribosomal_S3Ae: Ribos 27.7 1.9E+02 0.0041 26.8 6.5 68 263-337 107-176 (194)
69 COG3462 Predicted membrane pro 27.4 1.4E+02 0.0029 25.1 4.8 14 135-148 9-22 (117)
70 KOG2962|consensus 26.7 3.1E+02 0.0068 26.2 7.6 41 12-53 142-188 (322)
71 PF07009 DUF1312: Protein of u 26.6 76 0.0016 26.5 3.3 21 209-229 19-39 (113)
72 KOG2668|consensus 26.3 1.3E+02 0.0029 30.4 5.4 92 5-98 116-219 (428)
73 COG1890 RPS1A Ribosomal protei 25.2 5.8E+02 0.013 24.0 9.4 85 262-353 108-194 (214)
74 PRK13665 hypothetical protein; 24.2 2E+02 0.0044 28.1 6.0 39 5-43 190-230 (316)
75 PF12127 YdfA_immunity: SigmaW 23.1 1.7E+02 0.0037 28.7 5.3 39 5-43 185-225 (316)
76 COG4864 Uncharacterized protei 23.0 1.9E+02 0.004 27.5 5.4 39 5-43 189-229 (328)
77 PF03904 DUF334: Domain of unk 20.6 1.9E+02 0.0041 27.5 4.9 38 132-170 153-192 (230)
No 1
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=100.00 E-value=1.3e-45 Score=374.48 Aligned_cols=266 Identities=20% Similarity=0.246 Sum_probs=214.0
Q ss_pred cCCCchhhccHHHHHHHHhhhcccCCCCCCCCCC-Cc--chhhHHHHHHHHHHHHHHHHHHhceeEEecCCeEEEEEECC
Q psy14362 149 TLPFSLFVCFKPYLNRINKVFSSLFSADNADPSD-AG--ICGSLMTGLSWFLVGITLPFSLFVCFKVVQEYERAVIFRLG 225 (422)
Q Consensus 149 ~~P~dL~~~~r~~~~~L~~~fg~~~~~~~~~~~~-~~--~~g~~~~~~~~~v~lv~~~~~~~~~~~~V~~ge~gVv~~fG 225 (422)
.+||||+++|+++.++++++||++++++++++++ .+ .++..+ +.+++++++++|+++|||+|+++|+|||++||
T Consensus 36 ~~ppdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---i~ii~~~~v~i~l~sg~yiV~e~E~gVV~rFG 112 (419)
T PRK10930 36 QGPPDLDDIFRKLSKKLGGLGGGKGTGSGGGSSSQGPRPQLGGRV---VGIAAAAVVIIWAASGFYTIKEAERGVVTRFG 112 (419)
T ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcccccccchH---HHHHHHHHHHHHHHheEEEECCCeEEEEEECC
Confidence 4699999999999999998654332211111111 00 111111 12233344566889999999999999999999
Q ss_pred eeecCcccccceEEEccccceEEEEEeeeEEeecCCCccccCCCceEEEEEEEEEEecchHHHHHhhcChHHHHHHHHHH
Q psy14362 226 RLVSGGAKGPGIFFILPCMDSYVCVDLRTRTYDVPPQEVLTKDSVTVSVDAVVYYRVSNATISVANVANAHHSTKLLAQT 305 (422)
Q Consensus 226 k~~~~~v~~pGlh~~~P~i~~v~~v~~r~~~~~~~~~~~~T~D~~~V~V~~~V~yrI~d~~~~~~~~~~~~~~l~~~~~~ 305 (422)
|+. .+++||+||++||+++|..+|++.+......+.|+|+|++.|+|+++|+|||.||.+|+|++.+++..+++++++
T Consensus 113 k~~--~~l~PGLhfk~PfId~V~~vdv~~~~~~~~~~~mLT~D~n~V~Vd~~VqYrI~Dp~~~lf~v~~~~~~L~~~~~S 190 (419)
T PRK10930 113 KFS--HLVEPGLNWKPTFIDEVKPVNVEAVRELAASGVMLTSDENVVRVEMNVQYRVTDPEKYLFSVTSPDDSLRQATDS 190 (419)
T ss_pred cCc--ceeCCceEEecCceEEEEEEEeEEEEEccCcceeECCCCCEEEEEEEEEEEECCHHHHHHhccCHHHHHHHHHHH
Confidence 998 589999999999999999999988766656678999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccchhHHHh-hHHHHHHHHHHHHHHHhhcC--CeEEEEEEeeccCCcHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy14362 306 TLRNVMGTRPLHEILS-EREAISNTMQLALDEATEDW--GIKVERVEIKDVRLPVQLQRAMAAEAEATREARAKVIAAEG 382 (422)
Q Consensus 306 alR~vv~~~tld~ll~-~R~~i~~~i~~~L~~~l~~~--GI~V~~V~I~~i~~P~~v~~Ai~~~~~Ae~ea~A~i~~Ae~ 382 (422)
+||+++|+++++++++ +|++|..++++.+++.++.| ||+|.+|+|++++||+++++||++...|++++++.+.+|++
T Consensus 191 AlR~vIG~~tldevLt~~R~~I~~~i~~~l~e~l~~y~~GI~V~~V~I~di~pP~eV~~Af~~v~~Are~~~~~i~eAea 270 (419)
T PRK10930 191 ALRGVIGKYTMDRILTEGRTVIRSDTQRELEETIRPYDMGITLLDVNFQAARPPEEVKAAFDDAIAARENEQQYIREAEA 270 (419)
T ss_pred HHHHHHccCCHHHHhhccHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 59999999999999999987 99999999999999999999999888877665555555554
Q ss_pred HHHH------------------------HHHHHHHHH------HHhcCHHHHHHH-HHHHHHhhhhhh
Q psy14362 383 EHKA------------------------SRALREASE------VISDSPAALQLR-YLQFQYSKFSAC 419 (422)
Q Consensus 383 ea~a------------------------a~~~aeAa~------~l~~~p~~~~lr-~lE~~~~~l~~~ 419 (422)
++.. ++++++|++ .+..+|++++.| |||+|.++|+.+
T Consensus 271 yan~iip~A~gea~~ii~~AeAyr~~~i~~AeGda~rF~~i~~~Y~kaP~vtr~RlYletme~vl~~~ 338 (419)
T PRK10930 271 YTNEVQPRANGQAQRILEEARAYKAQTILEAQGEVARFAKLLPEYKAAPEITRERLYIETMEKVLGHT 338 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHccC
Confidence 4321 233334432 245689999766 999999999864
No 2
>KOG2621|consensus
Probab=100.00 E-value=1.4e-38 Score=297.60 Aligned_cols=237 Identities=68% Similarity=1.019 Sum_probs=229.7
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHHhceeEEecCCeEEEEEECCeeecCcccccceEEEccccceEEEEEeeeEEeec
Q psy14362 180 PSDAGICGSLMTGLSWFLVGITLPFSLFVCFKVVQEYERAVIFRLGRLVSGGAKGPGIFFILPCMDSYVCVDLRTRTYDV 259 (422)
Q Consensus 180 ~~~~~~~g~~~~~~~~~v~lv~~~~~~~~~~~~V~~ge~gVv~~fGk~~~~~v~~pGlh~~~P~i~~v~~v~~r~~~~~~ 259 (422)
..+.+.++|++.++.++++++++++.+++|+.+|++.|++|++|+|+...+...|||+.|.+|++++..+||+|++++++
T Consensus 25 ~~~~~~~~~~l~~~S~llvi~TfP~S~~fclKiv~eYeR~VIfRLGRl~~~~~rGPGi~fvlPCIDt~~kVDLRt~sfnV 104 (288)
T KOG2621|consen 25 SKPLGACEWLLVILSFLLVLMTFPISIWFCLKIVQEYERAVIFRLGRLRTGGARGPGLFFLLPCIDTFRKVDLRTQSFNV 104 (288)
T ss_pred cCCcchHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHhhhhheeeeeccccCCCCCCeEEEecccceeeeeeeeEEeecC
Confidence 45678899999999999999999999999999999999999999999986668899999999999999999999999999
Q ss_pred CCCccccCCCceEEEEEEEEEEecchHHHHHhhcChHHHHHHHHHHHHHHHhcccchhHHHhhHHHHHHHHHHHHHHHhh
Q psy14362 260 PPQEVLTKDSVTVSVDAVVYYRVSNATISVANVANAHHSTKLLAQTTLRNVMGTRPLHEILSEREAISNTMQLALDEATE 339 (422)
Q Consensus 260 ~~~~~~T~D~~~V~V~~~V~yrI~d~~~~~~~~~~~~~~l~~~~~~alR~vv~~~tld~ll~~R~~i~~~i~~~L~~~l~ 339 (422)
++++++|+|...|.|++.|+|||.||...+.++.|.....+-.+++.||.++|+.++.+++++|+.|+.+++..|++...
T Consensus 105 PpqeIltkDsvtvsVdAvVyyri~dpi~sv~~V~Da~~sTr~lAqttLrn~lgtk~L~eils~r~~is~~~~~~Ld~~T~ 184 (288)
T KOG2621|consen 105 PPQEILTKDSVTISVDAVVYYRISDPIIAVNNVGDADNATRLLAQTTLRNYLGTKTLSEILSSREVIAQEAQKALDEATE 184 (288)
T ss_pred CHHHHhcccceEEEeceEEEEEecCHHHHHHhccCHHHHHHHHHHHHHHHHHccCcHHHHHHhHHHHHHHHHHHhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEEEEeeccCCcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhh
Q psy14362 340 DWGIKVERVEIKDVRLPVQLQRAMAAEAEATREARAKVIAAEGEHKASRALREASEVISDSPAALQLRYLQFQYSKF 416 (422)
Q Consensus 340 ~~GI~V~~V~I~~i~~P~~v~~Ai~~~~~Ae~ea~A~i~~Ae~ea~aa~~~aeAa~~l~~~p~~~~lr~lE~~~~~l 416 (422)
.|||.|++|.|.||.+|.+.++++...++|.+++.|+++.||||..+.++.++|+..+++||..++||||++++...
T Consensus 185 ~WGvkVeRVEikDvrlp~qlqramaaeAeA~reA~Akviaaege~~as~al~~aa~v~~~sp~alqLryLqtl~sia 261 (288)
T KOG2621|consen 185 PWGVKVERVEIKDVRLPAQLQRAMAAEAEATREARAKVIAAEGEKKASEALKEAADVISESPIALQLRYLQTLNSIA 261 (288)
T ss_pred ccceEEEEEEEeeeechHhhhhhhhchhhhhhhhhhhHHHHHhhhHHHHHHHHhhccccCCchhhhhhhhhcchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987643
No 3
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=100.00 E-value=4.8e-37 Score=304.16 Aligned_cols=218 Identities=26% Similarity=0.402 Sum_probs=185.8
Q ss_pred HHHHHHHhceeEEecCCeEEEEEECCeeecC-----cccccceEEEccccceEEEEEeeeEEeecCCCccccCCCceEEE
Q psy14362 200 ITLPFSLFVCFKVVQEYERAVIFRLGRLVSG-----GAKGPGIFFILPCMDSYVCVDLRTRTYDVPPQEVLTKDSVTVSV 274 (422)
Q Consensus 200 v~~~~~~~~~~~~V~~ge~gVv~~fGk~~~~-----~v~~pGlh~~~P~i~~v~~v~~r~~~~~~~~~~~~T~D~~~V~V 274 (422)
+++++|+++|||+|++||+|||++|||++++ .+++||+||++||++++..||+|.+.++.+.+.++|+|++.|+|
T Consensus 10 ~~~~~~l~~s~~iV~ege~gVV~rFGk~~~~~~~~~~~l~PGLhf~iPfid~V~~vdvR~q~~d~~~~~vlT~D~~~V~V 89 (334)
T PRK11029 10 IIVLVVLYMSVFVVKEGERGIVLRFGKVLRDDDNKPLVYAPGLHFKIPFIETVKMLDARIQTMDNQADRFVTKEKKDLIV 89 (334)
T ss_pred HHHHHHHHheEEEECCCeEEEEEECCceeccccccccccCCceEEEcCCceEEEEEeeEEEEeeCCCceEEcCCCCEEEE
Confidence 3345677899999999999999999999862 14899999999999999999999999999988999999999999
Q ss_pred EEEEEEEecchHHHHHhh-----cChHHHHHHHHHHHHHHHhcccchhHHHh-hHHHHHHHHHHHHHHH-----------
Q psy14362 275 DAVVYYRVSNATISVANV-----ANAHHSTKLLAQTTLRNVMGTRPLHEILS-EREAISNTMQLALDEA----------- 337 (422)
Q Consensus 275 ~~~V~yrI~d~~~~~~~~-----~~~~~~l~~~~~~alR~vv~~~tld~ll~-~R~~i~~~i~~~L~~~----------- 337 (422)
+++|+|||.||..+++.+ .++...+++.+++++|+++|+++++++++ +|++|..++++.+++.
T Consensus 90 D~~V~yrI~Dp~~~~~~~~~~n~~~a~~~l~~~v~salR~viG~~tldei~~~~R~~i~~~v~~~l~~~~~~~~~~~~~~ 169 (334)
T PRK11029 90 DSYIKWRISDFSRYYLATGGGDISQAEVLLKRKFSDRLRSEIGRLDVKDIVTDSRGRLTLDVRDALNSGSAGTEDEVATP 169 (334)
T ss_pred EEEEEEEECCHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHcccCHHHHHHhhHHHHHHHHHHHHHHhhhccccccccc
Confidence 999999999999998764 23457788999999999999999999998 6999999999999964
Q ss_pred ----------------------------hhcCCeEEEEEEeeccCCcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy14362 338 ----------------------------TEDWGIKVERVEIKDVRLPVQLQRAMAAEAEATREARAKVIAAEGEHKASRA 389 (422)
Q Consensus 338 ----------------------------l~~~GI~V~~V~I~~i~~P~~v~~Ai~~~~~Ae~ea~A~i~~Ae~ea~aa~~ 389 (422)
+.+|||+|.+|.|++++||++++++|.++++|+++++|...+|+|++++++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GI~V~~V~i~~i~~P~~v~~ai~~~~~Aere~~a~~~~aege~~a~~~ 249 (334)
T PRK11029 170 AADDAIASAAERVEAETKGKVPVINPNSMAALGIEVVDVRIKQINLPTEVSDAIYNRMRAEREAVARRHRSQGQEEAEKL 249 (334)
T ss_pred ccccccccchhhcccccccccccccccccccCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999988777777666554321
Q ss_pred --------------------------HHHHHHH----HhcCHHHHHH-HHHHHHHhhhh
Q psy14362 390 --------------------------LREASEV----ISDSPAALQL-RYLQFQYSKFS 417 (422)
Q Consensus 390 --------------------------~aeAa~~----l~~~p~~~~l-r~lE~~~~~l~ 417 (422)
++++.+. +.++|..++. ++||+++..++
T Consensus 250 ~a~A~~e~~~~~AeA~~~a~i~~aegeA~a~~~~~~a~~~~p~~~~~~~~lea~~~~~~ 308 (334)
T PRK11029 250 RATADYEVTRTLAEAERQGRIMRGEGDAEAAKLFADAFSQDPDFYAFIRSLRAYENSFS 308 (334)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 1222233 3567888854 69999998876
No 4
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local
Probab=100.00 E-value=6e-37 Score=287.78 Aligned_cols=205 Identities=52% Similarity=0.736 Sum_probs=198.2
Q ss_pred ecCCeEEEEEECCeeecCcccccceEEEccccceE-EEEEeeeEEeecCCCccccCCCceEEEEEEEEEEecchHHHHHh
Q psy14362 213 VQEYERAVIFRLGRLVSGGAKGPGIFFILPCMDSY-VCVDLRTRTYDVPPQEVLTKDSVTVSVDAVVYYRVSNATISVAN 291 (422)
Q Consensus 213 V~~ge~gVv~~fGk~~~~~v~~pGlh~~~P~i~~v-~~v~~r~~~~~~~~~~~~T~D~~~V~V~~~V~yrI~d~~~~~~~ 291 (422)
|+|||+||+++||++.+ +.+||+||++||++++ +.||++.++++++...++|+|+++|++++++.|||.||.++++.
T Consensus 1 V~~ge~~Vv~~~G~~~~--~~~pG~~f~~P~~~~v~~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d~~~~~~~ 78 (215)
T cd03403 1 VPQYERGVVERLGKYHR--TLGPGLHFIIPFIDRIAYKVDLREQVLDVPPQEVITKDNVTVRVDAVLYYRVVDPVKAVYG 78 (215)
T ss_pred CCcceEEEEEEcCcCcc--ccCCcEEEEeccceEEEEEEeeEEEEEccCCceeEcCCCCEEEEEEEEEEEEecHHHHHhc
Confidence 78999999999999995 6999999999999999 99999999999988889999999999999999999999999999
Q ss_pred hcChHHHHHHHHHHHHHHHhcccchhHHHhhHHHHHHHHHHHHHHHhhcCCeEEEEEEeeccCCcHHHHHHHHHHHHHHH
Q psy14362 292 VANAHHSTKLLAQTTLRNVMGTRPLHEILSEREAISNTMQLALDEATEDWGIKVERVEIKDVRLPVQLQRAMAAEAEATR 371 (422)
Q Consensus 292 ~~~~~~~l~~~~~~alR~vv~~~tld~ll~~R~~i~~~i~~~L~~~l~~~GI~V~~V~I~~i~~P~~v~~Ai~~~~~Ae~ 371 (422)
+.+++..+.+.+++++|++++++++++++++|+++++.+++.+++.++.|||+|++|.|+++++|+++.++|.+++.|++
T Consensus 79 ~~~~~~~l~~~~~~~lr~~i~~~~~~el~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~i~~i~~p~~~~~ai~~~~~A~~ 158 (215)
T cd03403 79 VEDYRYAISQLAQTTLRSVIGKMELDELLSEREEINAELVEILDEATDPWGVKVERVEIKDIILPQEIQEAMAKQAEAER 158 (215)
T ss_pred CCCHHHHHHHHHHHHHHHHHccccHHHHHhhHHHHHHHHHHHHHHHHhccCeEEEEEEEeeecCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhh
Q psy14362 372 EARAKVIAAEGEHKASRALREASEVISDSPAALQLRYLQFQYSKFSAC 419 (422)
Q Consensus 372 ea~A~i~~Ae~ea~aa~~~aeAa~~l~~~p~~~~lr~lE~~~~~l~~~ 419 (422)
++++.+.+|+|++++++..++|.+....||.++.+|++|.+.+..+..
T Consensus 159 ~~~a~i~~A~ge~~a~~~~aea~~~~~~~~~~~~~~~~e~~~~~~~~~ 206 (215)
T cd03403 159 EKRAKIIEAEGERQAAILLAEAAKQAAINPAALQLRELETLEEIAKEA 206 (215)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999877643
No 5
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=100.00 E-value=3.2e-36 Score=298.53 Aligned_cols=218 Identities=23% Similarity=0.364 Sum_probs=179.1
Q ss_pred HHHHHHhceeEEecCCeEEEEEECCeeecC-----cccccceEEEccccceEEEEEeeeEEeecCCCccccCCCceEEEE
Q psy14362 201 TLPFSLFVCFKVVQEYERAVIFRLGRLVSG-----GAKGPGIFFILPCMDSYVCVDLRTRTYDVPPQEVLTKDSVTVSVD 275 (422)
Q Consensus 201 ~~~~~~~~~~~~V~~ge~gVv~~fGk~~~~-----~v~~pGlh~~~P~i~~v~~v~~r~~~~~~~~~~~~T~D~~~V~V~ 275 (422)
++++|+++|||+|+|||+||+++|||+.+. .+++||+||++||++++..+|++.++++.+...++|+|+++|+|+
T Consensus 11 ~~~~~l~~~~~iV~~ge~gVv~~fGk~~~~~~~~~~v~~pGlhf~~P~i~~v~~vd~r~q~~~~~~~~vlTkD~~~V~Vd 90 (317)
T TIGR01932 11 LLIVVLFQPFFIIKEGERGIITRFGKILKDNNHHVLVYEPGLHFKIPFIEHVKIFDAKIQTMDGRPDRIPTKEKKDIIID 90 (317)
T ss_pred HHHHHHHheEEEECCCeEEEEEecCceeccccccccccCCCeEEEeccccEEEEeeeeEEEecCCcceeECCCCCEEEEE
Confidence 345677889999999999999999999852 134899999999999999999999999988889999999999999
Q ss_pred EEEEEEecchHHHHHhhc--C---hHHHHHHHHHHHHHHHhcccchhHHHhh-HHHH-----------------------
Q psy14362 276 AVVYYRVSNATISVANVA--N---AHHSTKLLAQTTLRNVMGTRPLHEILSE-REAI----------------------- 326 (422)
Q Consensus 276 ~~V~yrI~d~~~~~~~~~--~---~~~~l~~~~~~alR~vv~~~tld~ll~~-R~~i----------------------- 326 (422)
++++|||.||.++++++. + ++..+++.+++++|+++|++++++++++ |++|
T Consensus 91 ~~V~yrV~d~~~~~~~~~~~~~~~~~~~l~~~~~~~lR~vig~~tl~eil~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~ 170 (317)
T TIGR01932 91 TYIRWRIEDFKKYYLSTGGGTISAAEVLIKRKIDDRLRSEIGVLGLKEIVRSSNDQLDTLVSKLALNRGGKINKIAMTIT 170 (317)
T ss_pred EEEEEEECCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHccCcHHHHHhcchHHhhhhhchhhccccccccccccccc
Confidence 999999999999998765 3 5677999999999999999999999974 6666
Q ss_pred ------HHHHHHHHHHHhhcCCeEEEEEEeeccCCcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--------------
Q psy14362 327 ------SNTMQLALDEATEDWGIKVERVEIKDVRLPVQLQRAMAAEAEATREARAKVIAAEGEHKA-------------- 386 (422)
Q Consensus 327 ------~~~i~~~L~~~l~~~GI~V~~V~I~~i~~P~~v~~Ai~~~~~Ae~ea~A~i~~Ae~ea~a-------------- 386 (422)
...+++.+...+.+|||+|++|.|++++||++++++|.+++.|+++++|...+++|++++
T Consensus 171 ~~r~~l~~~i~~~~~~~~~~~Gi~V~~V~I~~i~~p~~v~~Ai~~~~~aere~~a~~~r~ege~~a~~i~a~A~~e~~~~ 250 (317)
T TIGR01932 171 KGREILAREISQIANSQLKDIGIEVVDVRIKKINYSDELSESIYNRMRSEREQIARMHRSQGEEKAEEILGKAEYEVRKI 250 (317)
T ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557788888889999999999999999999999999998888877655444333332221
Q ss_pred ----------HH--HHHHHHH----HHhcCHHHHH-HHHHHHHHhhhhh
Q psy14362 387 ----------SR--ALREASE----VISDSPAALQ-LRYLQFQYSKFSA 418 (422)
Q Consensus 387 ----------a~--~~aeAa~----~l~~~p~~~~-lr~lE~~~~~l~~ 418 (422)
.+ .++++.+ .+.++|..++ +++||++...++.
T Consensus 251 ~aeA~a~a~~~~Aegea~a~~~~~~a~~~~p~~~~~~~~le~~~~~~~~ 299 (317)
T TIGR01932 251 LSEAYRTARIIKGEGDAEAAKIYSDAYGKDPEFYSFWRSLEAYEKSFKD 299 (317)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhCC
Confidence 11 1222222 3567899996 6799999998863
No 6
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=100.00 E-value=7.5e-35 Score=278.46 Aligned_cols=204 Identities=30% Similarity=0.429 Sum_probs=173.6
Q ss_pred eEEecCCeEEEEEECCeeecCcccccceEEEccccceEEEEEeeeEEeecCCCccccCCCceEEEEEEEEEEecchHHHH
Q psy14362 210 FKVVQEYERAVIFRLGRLVSGGAKGPGIFFILPCMDSYVCVDLRTRTYDVPPQEVLTKDSVTVSVDAVVYYRVSNATISV 289 (422)
Q Consensus 210 ~~~V~~ge~gVv~~fGk~~~~~v~~pGlh~~~P~i~~v~~v~~r~~~~~~~~~~~~T~D~~~V~V~~~V~yrI~d~~~~~ 289 (422)
||+|+|||+||+++|||+.+ .+++||+||++||+++++.+|++.+.++.+...++|+|++.|+++++++|||.||.+++
T Consensus 1 ~~iV~~ge~~Vv~~~Gk~~~-~~~~pG~~~~~P~i~~v~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d~~~~~ 79 (242)
T cd03405 1 LFIVDEGEQAVVLRFGEVVR-VVTEPGLHFKLPFIQQVKKFDKRILTLDSDPQRVLTKDKKRLIVDAYAKWRITDPLRFY 79 (242)
T ss_pred CEEeCCCeEEEEEEcCcccc-ccCCCCeeEEcCCcceEEEEcCEEEeccCCcceEEccCCcEEEEEEEEEEEEcCHHHHH
Confidence 68999999999999999985 47999999999999999999999999988888999999999999999999999999999
Q ss_pred HhhcChH----HHHHHHHHHHHHHHhcccchhHHHhh-HHHHHHHHHHHHHHHhhcCCeEEEEEEeeccCCcHHHHHHHH
Q psy14362 290 ANVANAH----HSTKLLAQTTLRNVMGTRPLHEILSE-REAISNTMQLALDEATEDWGIKVERVEIKDVRLPVQLQRAMA 364 (422)
Q Consensus 290 ~~~~~~~----~~l~~~~~~alR~vv~~~tld~ll~~-R~~i~~~i~~~L~~~l~~~GI~V~~V~I~~i~~P~~v~~Ai~ 364 (422)
+++.++. ..+.+.+++++|+++|++++++++++ |++|++.+++.+++.+++|||+|.+|+|++++||+++.++|.
T Consensus 80 ~~~~~~~~~~~~~i~~~~~~~lr~vi~~~~~~el~~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~i~~ai~ 159 (242)
T cd03405 80 QAVGGEERAAETRLDQIVNSALRAEFGKRTLIELVSGERGELMEEIRRAVAEEAKELGIEVVDVRIKRIDLPEEVSESVY 159 (242)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHHHHHHccCcEEEEEEEEeccCCHHHHHHHH
Confidence 8887654 67899999999999999999999987 999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHhHHHH----------------------HH----HHHHHHH----HHHhcCHHHHH-HHHHHHHH
Q psy14362 365 AEAEATREARAKVIAAEGEHK----------------------AS----RALREAS----EVISDSPAALQ-LRYLQFQY 413 (422)
Q Consensus 365 ~~~~Ae~ea~A~i~~Ae~ea~----------------------aa----~~~aeAa----~~l~~~p~~~~-lr~lE~~~ 413 (422)
+++.|++++.+...+|+|+++ +. +.++++. ..+++||+++. +++||++.
T Consensus 160 ~~~~ae~~~~a~~~~ae~~~~a~~~~aea~~~~~~~~Aea~a~a~~~~a~gea~a~~~~~~a~~~~p~~~~~~~~l~~~~ 239 (242)
T cd03405 160 RRMRAERERIAAEFRAEGEEEAERIRADADRERTVILAEAYREAQEIRGEGDAEAARIYAEAYGKDPEFYAFYRSLEAYR 239 (242)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 877777766555433333322 21 1112222 23567899986 57888876
Q ss_pred h
Q psy14362 414 S 414 (422)
Q Consensus 414 ~ 414 (422)
.
T Consensus 240 ~ 240 (242)
T cd03405 240 N 240 (242)
T ss_pred h
Confidence 4
No 7
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=100.00 E-value=1.1e-34 Score=281.20 Aligned_cols=183 Identities=26% Similarity=0.378 Sum_probs=158.3
Q ss_pred HHHHHHHhceeEEecCCeEEEEEECCeeecCcccccceEEEccccceEE-EEEeeeE----------E--eecCCCcccc
Q psy14362 200 ITLPFSLFVCFKVVQEYERAVIFRLGRLVSGGAKGPGIFFILPCMDSYV-CVDLRTR----------T--YDVPPQEVLT 266 (422)
Q Consensus 200 v~~~~~~~~~~~~V~~ge~gVv~~fGk~~~~~v~~pGlh~~~P~i~~v~-~v~~r~~----------~--~~~~~~~~~T 266 (422)
+++++|+++||++|+|||+|||++|||++ .+++||+||++||++++. .+|++.+ . ...+...++|
T Consensus 5 ~~~~~~~~~s~~~V~~ge~gVV~~fGk~~--~~~~pGlh~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~T 82 (266)
T cd03404 5 LLVILWLLSGFYIVQPGERGVVLRFGKYS--RTVEPGLHWKLPYPIEVVEVVPVFQLRSVGIPVRVGSVRSVPGESLMLT 82 (266)
T ss_pred HHHHHHHHcEEEEECCCceEEeEEcCccc--cccCCceeEecCCCcEEEEEecceeEEeeccccccccccCCCcccceEe
Confidence 34456778899999999999999999998 589999999999988875 4444321 1 1122346899
Q ss_pred CCCceEEEEEEEEEEecchHHHHHhhcChHHHHHHHHHHHHHHHhcccchhHHHhh-HHHHHHHHHHHHHHHhhcC--Ce
Q psy14362 267 KDSVTVSVDAVVYYRVSNATISVANVANAHHSTKLLAQTTLRNVMGTRPLHEILSE-REAISNTMQLALDEATEDW--GI 343 (422)
Q Consensus 267 ~D~~~V~V~~~V~yrI~d~~~~~~~~~~~~~~l~~~~~~alR~vv~~~tld~ll~~-R~~i~~~i~~~L~~~l~~~--GI 343 (422)
+|++.|++++++.|||.||.+++++..+++..+.+.+++++|+++|++++++++++ |+++.+.+++.+++.++.| ||
T Consensus 83 ~D~~~v~vd~~v~yrI~d~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~eil~~~R~~i~~~i~~~l~~~~~~~~~Gi 162 (266)
T cd03404 83 GDENIVDVEFAVQYRISDPYDYLFNVRDPEGTLRQAAESAMREVVGRSTLDDVLTEGREEIAQDVRELLQAILDAYKAGI 162 (266)
T ss_pred CCCCEEEEEEEEEEEECCHHHHHhhCCCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHhhccCCCe
Confidence 99999999999999999999999999999999999999999999999999999996 9999999999999999976 99
Q ss_pred EEEEEEeeccCCcHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy14362 344 KVERVEIKDVRLPVQLQRAMAAEAEATREARAKVIAAEGEH 384 (422)
Q Consensus 344 ~V~~V~I~~i~~P~~v~~Ai~~~~~Ae~ea~A~i~~Ae~ea 384 (422)
.|++|.|++++||+++.++|+++..|++++++.+.+|++++
T Consensus 163 ~v~~v~i~~i~~p~~i~~a~~~~~~A~q~~~~~~~eae~~a 203 (266)
T cd03404 163 EIVGVNLQDADPPEEVQDAFDDVNKARQDRERLINEAEAYA 203 (266)
T ss_pred EEEEEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998888877666665555443
No 8
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=100.00 E-value=1.3e-33 Score=273.08 Aligned_cols=206 Identities=23% Similarity=0.342 Sum_probs=173.0
Q ss_pred eEEecCCeEEEEEECCeeecCcccccceEEEccccceEEEEEeeeEEeecCCCccccCCCceEEEEEEEEEEecchHHHH
Q psy14362 210 FKVVQEYERAVIFRLGRLVSGGAKGPGIFFILPCMDSYVCVDLRTRTYDVPPQEVLTKDSVTVSVDAVVYYRVSNATISV 289 (422)
Q Consensus 210 ~~~V~~ge~gVv~~fGk~~~~~v~~pGlh~~~P~i~~v~~v~~r~~~~~~~~~~~~T~D~~~V~V~~~V~yrI~d~~~~~ 289 (422)
+|+|+|||+|||++|||+. .+++||+||++||+++++.+|++.+....+...++|+|++.|+|+++++|||.||.+|+
T Consensus 1 ~~iV~~ge~~Vv~~fGk~~--~~l~pGl~~~~P~i~~v~~~~~~~~~~~~~~~~v~T~D~~~v~vd~~v~yrI~d~~~~~ 78 (261)
T TIGR01933 1 IYTIGEAERGVVLRFGKYH--RTVDPGLNWKPPFIEEVYPVNVTAVRNLRKQGLMLTGDENIVNVEMNVQYRITDPYKYL 78 (261)
T ss_pred CEEeCCCeEEEEEEcCccc--cccCCcceEECCCceEEEEeeeEEEEecCCcCeEEeCCCCEEEEEEEEEEEECCHHHHH
Confidence 5899999999999999998 48999999999999999999998655333444689999999999999999999999999
Q ss_pred HhhcChHHHHHHHHHHHHHHHhcccchhHHHh-hHHHHHHHHHHHHHHHhhcC--CeEEEEEEeeccCCcHHHHHHHHHH
Q psy14362 290 ANVANAHHSTKLLAQTTLRNVMGTRPLHEILS-EREAISNTMQLALDEATEDW--GIKVERVEIKDVRLPVQLQRAMAAE 366 (422)
Q Consensus 290 ~~~~~~~~~l~~~~~~alR~vv~~~tld~ll~-~R~~i~~~i~~~L~~~l~~~--GI~V~~V~I~~i~~P~~v~~Ai~~~ 366 (422)
|++.+++..+++.+++++|+++|+++++++++ +|++|+..+++.+++.++.| ||+|++|.|++++||+++.++|+++
T Consensus 79 ~~~~~~~~~l~~~~~s~lR~vig~~~l~eil~~~R~~i~~~i~~~l~~~~~~~~~GI~V~~v~I~~i~~p~~v~~a~~~~ 158 (261)
T TIGR01933 79 FSVENPEDSLRQATDSALRGVIGDSTMDDILTEGRSQIREDTKERLNEIIDNYDLGITVTDVNFQSARPPEEVKEAFDDV 158 (261)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHHhhhcCCcEEEEEEEEecCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999 89999999999999999965 9999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHhHHHH----------------------H--HHHHHHHH--H----HHhcCHHHHHH-HHHHHHHhh
Q psy14362 367 AEATREARAKVIAAEGEHK----------------------A--SRALREAS--E----VISDSPAALQL-RYLQFQYSK 415 (422)
Q Consensus 367 ~~Ae~ea~A~i~~Ae~ea~----------------------a--a~~~aeAa--~----~l~~~p~~~~l-r~lE~~~~~ 415 (422)
+.|++++++.+.+|++++. + ++++++|. + .+..+|+++.. +++|++...
T Consensus 159 ~~a~q~~~~~~~~ae~~~~~~~~~a~~~a~~~~~~Aea~~~~~~~~a~g~a~~~~~~~~ay~~~p~~~~~~~~le~~~~~ 238 (261)
T TIGR01933 159 IIAREDEERYINEAEAYANEVVPKARGDAQRIIEEARGYKERRINRAKGDVARFTKLLAEYKKAPDVTRERLYLETMEKV 238 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 8887666554433333322 2 12222222 1 24467888854 599988887
Q ss_pred hh
Q psy14362 416 FS 417 (422)
Q Consensus 416 l~ 417 (422)
++
T Consensus 239 ~~ 240 (261)
T TIGR01933 239 LS 240 (261)
T ss_pred Hc
Confidence 75
No 9
>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=100.00 E-value=5e-34 Score=268.37 Aligned_cols=176 Identities=20% Similarity=0.319 Sum_probs=166.9
Q ss_pred eeEEecCCeEEEEEECCeeecCcccccceEEEccccceEEEEEeeeEEeecCCCccccCCCceEEEEEEEEEEecchHHH
Q psy14362 209 CFKVVQEYERAVIFRLGRLVSGGAKGPGIFFILPCMDSYVCVDLRTRTYDVPPQEVLTKDSVTVSVDAVVYYRVSNATIS 288 (422)
Q Consensus 209 ~~~~V~~ge~gVv~~fGk~~~~~v~~pGlh~~~P~i~~v~~v~~r~~~~~~~~~~~~T~D~~~V~V~~~V~yrI~d~~~~ 288 (422)
|||+|+|||+||+++||||.+ .+.+|||||++||++ ...+|+|.++++.+++.++|+|+++|+|++.++|||.||.++
T Consensus 1 g~~iV~~ge~~Vv~rfGk~~~-t~~~pGL~~~~P~~~-~~~vd~R~~~~~~~~~~v~T~D~~~v~V~~~V~~rV~Dp~ka 78 (219)
T cd03402 1 GLFVVEPNQARVLVLFGRYIG-TIRRTGLRWVNPFSS-KKRVSLRVRNFESEKLKVNDANGNPIEIAAVIVWRVVDTAKA 78 (219)
T ss_pred CeEEECCCeeEEEEEcCcCcc-cccCCceEEEeccce-EEEEeeEEEEecCCCceeEcCCCCEEEEEEEEEEEEcCHHHH
Confidence 689999999999999999996 456999999999985 478999999999998889999999999999999999999999
Q ss_pred HHhhcChHHHHHHHHHHHHHHHhcccchhHHHh-------hHHHHHHHHHHHHHHHhhcCCeEEEEEEeeccCCcHHHHH
Q psy14362 289 VANVANAHHSTKLLAQTTLRNVMGTRPLHEILS-------EREAISNTMQLALDEATEDWGIKVERVEIKDVRLPVQLQR 361 (422)
Q Consensus 289 ~~~~~~~~~~l~~~~~~alR~vv~~~tld~ll~-------~R~~i~~~i~~~L~~~l~~~GI~V~~V~I~~i~~P~~v~~ 361 (422)
+|++.|+...+...+++++|+++|+|+++++++ +|++|+.++++.+++.++.|||+|.+|+|+++.||+++.+
T Consensus 79 ~~~v~~~~~~l~~~~~salR~vig~~~~d~il~~~~~l~~~r~~I~~~l~~~l~~~l~~~GI~V~~v~I~~l~~p~ei~~ 158 (219)
T cd03402 79 VFNVDDYEEFVHIQSESALRHVASQYPYDDPVNKETSLRGNSDEVSDELARELQERLAVAGVEVVEARITHLAYAPEIAQ 158 (219)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHccCcHHHHhccccccccCHHHHHHHHHHHHHHHHHhhCcEEEEEEEEeecCCHHHHH
Confidence 999999999999999999999999999999985 5799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH
Q psy14362 362 AMAAEAEATREARAKVIAAEGEHKA 386 (422)
Q Consensus 362 Ai~~~~~Ae~ea~A~i~~Ae~ea~a 386 (422)
||.++++|+++.+|+...++|+..-
T Consensus 159 am~~R~~Ae~~~~Ar~~~~~Ga~~~ 183 (219)
T cd03402 159 AMLQRQQASAIIAARRKIVEGAVGM 183 (219)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchH
Confidence 9999999999999999999987644
No 10
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=100.00 E-value=1.9e-33 Score=272.08 Aligned_cols=167 Identities=27% Similarity=0.409 Sum_probs=155.1
Q ss_pred CCeEEEEEECCeeecCcccccceEEEccccceEE-EEEeeeEEeecCCCccccCCCceEEEEEEEEEEecchH--HHHHh
Q psy14362 215 EYERAVIFRLGRLVSGGAKGPGIFFILPCMDSYV-CVDLRTRTYDVPPQEVLTKDSVTVSVDAVVYYRVSNAT--ISVAN 291 (422)
Q Consensus 215 ~ge~gVv~~fGk~~~~~v~~pGlh~~~P~i~~v~-~v~~r~~~~~~~~~~~~T~D~~~V~V~~~V~yrI~d~~--~~~~~ 291 (422)
+|+.|||++|||+.+ +++||+||++||++++. .+|++.++++++. .++|+|++.|+|+++|+|||.||. +++|+
T Consensus 1 q~~~~Vv~rfGk~~~--~l~pGlhf~~P~i~~v~~~~~~r~~~~~~~~-~~lTkD~~~V~vd~~v~yrI~d~~~~~~~~~ 77 (262)
T cd03407 1 QSQVAIIERFGKFFK--VAWPGCHFVIPLVETVAGRLSLRVQQLDVRV-ETKTKDNVFVTVVGQIQYRVSEENATDAFYK 77 (262)
T ss_pred CcEEEEEeecCcccc--cCCCCeEEEeccccceeeEEeeeEEEecCCC-ceEcCCCCEEEEEEEEEEEECCcHHHHHHHH
Confidence 589999999999994 89999999999999984 8999999999886 579999999999999999999888 89999
Q ss_pred hcChHHHHHHHHHHHHHHHhcccchhHHHhhHHHHHHHHHHHHHHHhhcCCeEEEEEEeeccCCcHHHHHHHHHHHHHHH
Q psy14362 292 VANAHHSTKLLAQTTLRNVMGTRPLHEILSEREAISNTMQLALDEATEDWGIKVERVEIKDVRLPVQLQRAMAAEAEATR 371 (422)
Q Consensus 292 ~~~~~~~l~~~~~~alR~vv~~~tld~ll~~R~~i~~~i~~~L~~~l~~~GI~V~~V~I~~i~~P~~v~~Ai~~~~~Ae~ 371 (422)
+.+++..+++.+++++|+++|++++++++++|++|+..+++.+++.++.|||.|++|.|++++||+++++||++++.|++
T Consensus 78 ~~~~~~~l~~~~~s~lR~vig~~~l~eil~~R~~I~~~i~~~l~~~l~~~GI~V~~v~I~~i~~p~~v~~A~~~~~~A~~ 157 (262)
T cd03407 78 LGNPEEQIQSYVFDVLRARIPKLTLDELFEQKDEIAKAVEEELREAMSRYGFEIVATLITDIDPDAEVKRAMNEINAAQR 157 (262)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCccHHHHHhhHHHHHHHHHHHHHHHHHhcCcEEEEEEEEecCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHhHHH
Q psy14362 372 EARAKVIAAEGEH 384 (422)
Q Consensus 372 ea~A~i~~Ae~ea 384 (422)
++++.+.+|++++
T Consensus 158 ~~~a~~~~Aea~~ 170 (262)
T cd03407 158 QRVAAVHKAEAEK 170 (262)
T ss_pred HHHHHHHHhhHHH
Confidence 8776655555443
No 11
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=100.00 E-value=1.5e-31 Score=259.03 Aligned_cols=213 Identities=18% Similarity=0.237 Sum_probs=178.8
Q ss_pred hceeEEecCCeEEEEEECCeeecCcccccceEEEccccceEEEEEeeeEEeecCCCccccCCCceEEEEEEEEEEecchH
Q psy14362 207 FVCFKVVQEYERAVIFRLGRLVSGGAKGPGIFFILPCMDSYVCVDLRTRTYDVPPQEVLTKDSVTVSVDAVVYYRVSNAT 286 (422)
Q Consensus 207 ~~~~~~V~~ge~gVv~~fGk~~~~~v~~pGlh~~~P~i~~v~~v~~r~~~~~~~~~~~~T~D~~~V~V~~~V~yrI~d~~ 286 (422)
++|+|+|++|++||+++||++.+ .+++|||||++||++++..+|++.++.+.+...+.|+|+..|.++....|++.||.
T Consensus 2 ~ssv~iV~ege~gVV~RfGkv~~-~~l~PGLHfkiPfId~V~~v~vrlq~~~~~~~~v~TkDg~~ItvD~i~v~~ivdp~ 80 (280)
T cd03406 2 SSALHKIEEGHVGVYYRGGALLT-STSGPGFHLMLPFITTYKSVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLIPD 80 (280)
T ss_pred CceEEEECCCeEEEEEECCcccc-cccCCceEEecCCceEEEEEEeEEEEeccCCcccccCCCcEEEEEEEEEEEecCHH
Confidence 57899999999999999999976 58899999999999999999999999988777889999999999964344444777
Q ss_pred HHH-----HhhcChHHHHHHHHHHHHHHHhcccchhHHHh-hHHHHHHHHHHHHHHHhhcC--CeEEEEEEeeccCCcHH
Q psy14362 287 ISV-----ANVANAHHSTKLLAQTTLRNVMGTRPLHEILS-EREAISNTMQLALDEATEDW--GIKVERVEIKDVRLPVQ 358 (422)
Q Consensus 287 ~~~-----~~~~~~~~~l~~~~~~alR~vv~~~tld~ll~-~R~~i~~~i~~~L~~~l~~~--GI~V~~V~I~~i~~P~~ 358 (422)
.++ |...+....+.+.+++++|+++|+++++++++ +|+++...+++.+++.++.| ||+|.+|.|++++||++
T Consensus 81 ~~~~~~~~y~~~~~~~~I~~~Vrsavr~vig~~tldeVis~~Rd~I~~~I~~~l~e~l~~y~~GI~I~dV~I~~id~P~~ 160 (280)
T cd03406 81 SVYDIVKNYTADYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKLALQKDLTRMAPGLEIQAVRVTKPKIPEA 160 (280)
T ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHhhhCCHHHHHhccHHHHHHHHHHHHHHHHhccCCCcEEEEEEEEecCCCHH
Confidence 643 34456788899999999999999999999999 79999999999999999987 99999999999999999
Q ss_pred HHHHHHHHHHHHHHHH--------HHHHHHhHHHHHHHHHHHH-------------------------------------
Q psy14362 359 LQRAMAAEAEATREAR--------AKVIAAEGEHKASRALREA------------------------------------- 393 (422)
Q Consensus 359 v~~Ai~~~~~Ae~ea~--------A~i~~Ae~ea~aa~~~aeA------------------------------------- 393 (422)
+.++| ++++||+++. |...+||+++.++...|++
T Consensus 161 V~~af-erM~aER~k~~~~~~~~~~~~~~ae~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (280)
T cd03406 161 IRRNY-ELMEAEKTKLLIAIQKQKVVEKEAETERKKAVIEAEKVAQVAKILFGQKVMEKETEKRISEIEDEAFLAREKAK 239 (280)
T ss_pred HHHHH-HHHHHHHHhhhhccchhHHHHHHhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhhc
Confidence 99998 6888888888 7777777766553322222
Q ss_pred -------------HHHHhcCHHHHHHHHHHHHHhhhhhhcC
Q psy14362 394 -------------SEVISDSPAALQLRYLQFQYSKFSACAG 421 (422)
Q Consensus 394 -------------a~~l~~~p~~~~lr~lE~~~~~l~~~~g 421 (422)
+..+.-+|++++|++++++..+.+..+|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (280)
T cd03406 240 ADAEYYTAQKEAEANKLKLTPEYLELMKYEAIAANSKIYFG 280 (280)
T ss_pred cCHHHHHHHHHHhhchhcCCHHHHHHHHHHHHHhcCccccC
Confidence 0112246999999999999888776665
No 12
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-31 Score=260.50 Aligned_cols=187 Identities=48% Similarity=0.725 Sum_probs=172.0
Q ss_pred HHHHHHHHHhceeEEecCCeEEEEEECCeeecCcccc-cceEEEccc---cc-eEEEEEeeeEEeec-CCCccccCCCce
Q psy14362 198 VGITLPFSLFVCFKVVQEYERAVIFRLGRLVSGGAKG-PGIFFILPC---MD-SYVCVDLRTRTYDV-PPQEVLTKDSVT 271 (422)
Q Consensus 198 ~lv~~~~~~~~~~~~V~~ge~gVv~~fGk~~~~~v~~-pGlh~~~P~---i~-~v~~v~~r~~~~~~-~~~~~~T~D~~~ 271 (422)
+++++++|+++++++|+|++++++++||++.+ +.+ ||+||++|| +. .+..++.+.++++. +++.++|+|++.
T Consensus 9 ~l~~~~~~~~~~~~~v~~~~~~vv~r~G~~~~--~~~~pGl~f~iP~~~~~~~~~~~~~~~~~~~d~~~~q~viT~D~~~ 86 (291)
T COG0330 9 LLVILIVLLFSSIFVVKEGERGVVLRFGRYTR--TLGEPGLHFKIPFPEAIEEVVVRVDLRERTLDVGPPQEVITKDNVI 86 (291)
T ss_pred HHHHHHHHHHceeEEEcCCceEEEEEecceee--ecCCCceEEEcCCccceeeeeeeeeeEEEEeccCCcceEEecCCCE
Confidence 44456678889999999999999999999995 667 999999999 33 33677888999999 789999999999
Q ss_pred EEEEEEEEEEecchHHHHHhhcChHHHHHHHHHHHHHHHhcccchhHHHhhHH-HHHHHHHHHHHHHhhcCCeEEEEEEe
Q psy14362 272 VSVDAVVYYRVSNATISVANVANAHHSTKLLAQTTLRNVMGTRPLHEILSERE-AISNTMQLALDEATEDWGIKVERVEI 350 (422)
Q Consensus 272 V~V~~~V~yrI~d~~~~~~~~~~~~~~l~~~~~~alR~vv~~~tld~ll~~R~-~i~~~i~~~L~~~l~~~GI~V~~V~I 350 (422)
|+||++++|||+||.++++++.+++..+.+.+++.||+++|++++++++++|. .+...+++.+++.+++|||.|.+|+|
T Consensus 87 V~vd~~v~~rv~d~~~~~~~v~~~~~~l~~~~~~~lR~vig~~~~~e~~~~~~~~i~~~i~~~l~~~~~~~Gi~V~~V~i 166 (291)
T COG0330 87 VSVDAVVQYRVTDPQKAVYNVENAEAALRQLVQSALRSVIGRMTLDELLTERRAEINAKIREILDEAADPWGIKVVDVEI 166 (291)
T ss_pred EEEEEEEEEEEcCHHHHHHhcCCHHHHHHHHHHHHHHHHHccccHHHHhhCchHHHHHHHHHHHHHhhhhcCcEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999877 99999999999999999999999999
Q ss_pred eccCCcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy14362 351 KDVRLPVQLQRAMAAEAEATREARAKVIAAEGEHKA 386 (422)
Q Consensus 351 ~~i~~P~~v~~Ai~~~~~Ae~ea~A~i~~Ae~ea~a 386 (422)
++++||+++.++|.+++.|++++++.+.+|++++++
T Consensus 167 ~~i~~p~ev~~a~~~~~~Aer~~ra~i~~Ae~~~~~ 202 (291)
T COG0330 167 KDIDPPEEVQAAMEKQMAAERDKRAEILEAEGEAQA 202 (291)
T ss_pred eecCCCHHHHHHHHHHHHHHHHHHHHHHHhHhHHhh
Confidence 999999999999999999999999988888885543
No 13
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=100.00 E-value=3.7e-31 Score=245.02 Aligned_cols=184 Identities=24% Similarity=0.346 Sum_probs=156.7
Q ss_pred eeEEecCCeEEEEEECCeeecCcccccceEEEccccceEEEEEeeeEEeecCCCccccCCCceEEEEEEEEEEecchH-H
Q psy14362 209 CFKVVQEYERAVIFRLGRLVSGGAKGPGIFFILPCMDSYVCVDLRTRTYDVPPQEVLTKDSVTVSVDAVVYYRVSNAT-I 287 (422)
Q Consensus 209 ~~~~V~~ge~gVv~~fGk~~~~~v~~pGlh~~~P~i~~v~~v~~r~~~~~~~~~~~~T~D~~~V~V~~~V~yrI~d~~-~ 287 (422)
|||+|++|++||+++||++++..+++||+||++||+++++.+|++.+++++. ..+.|+|++.|++++.++|++.+.. .
T Consensus 1 ~~~~V~~g~~gVv~~~g~~~~~~~~~pG~h~~~P~~~~v~~~~~r~~~~~~~-~~~~t~d~~~V~v~~~v~y~v~~~~~~ 79 (196)
T cd03401 1 SLYNVDGGHRAVLFNRGGGVKDLVYGEGLHFRIPWFQKPIIFDVRARPRNIE-STTGSKDLQMVNITLRVLFRPDASQLP 79 (196)
T ss_pred CEEEECCCcEEEEEEecCccccCccCCceEEEccccceeEEEEeeeeEEEEe-ecccCCCCeEEEEEEEEEEEeCHHHHH
Confidence 5899999999999999998754589999999999999999999999998865 3678999999999999999995322 2
Q ss_pred HHHh-h--cChHHHHHHHHHHHHHHHhcccchhHHHhhHHHHHHHHHHHHHHHhhcCCeEEEEEEeeccCCcHHHHHHHH
Q psy14362 288 SVAN-V--ANAHHSTKLLAQTTLRNVMGTRPLHEILSEREAISNTMQLALDEATEDWGIKVERVEIKDVRLPVQLQRAMA 364 (422)
Q Consensus 288 ~~~~-~--~~~~~~l~~~~~~alR~vv~~~tld~ll~~R~~i~~~i~~~L~~~l~~~GI~V~~V~I~~i~~P~~v~~Ai~ 364 (422)
.+|. + ...+..+.+.+++++|+++|+|++++++++|++|+..+++.+++.++.|||.|++|.|++++||+++.++++
T Consensus 80 ~~~~~~~~~~~~~~i~~~v~~~lR~vi~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai~ 159 (196)
T cd03401 80 RIYQNLGEDYDERVLPSIINEVLKAVVAQFTAEELITQREEVSALIREALTERAKDFGIILDDVSITHLTFSKEFTKAVE 159 (196)
T ss_pred HHHHHhCcchHhhhhcHHHHHHHHHHHccCCHHHHHhhHHHHHHHHHHHHHHHHHhCCeEEEEEEEEeccCCHHHHHHHH
Confidence 2332 2 234567899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH---HHHHhHHHHHHHHHHHH
Q psy14362 365 AEAEATREARAK---VIAAEGEHKASRALREA 393 (422)
Q Consensus 365 ~~~~Ae~ea~A~---i~~Ae~ea~aa~~~aeA 393 (422)
+++.|+++++++ +.+|++|+++...+|++
T Consensus 160 ~k~~a~q~~~~a~~~~~~a~~ea~~~~~~A~g 191 (196)
T cd03401 160 AKQVAQQEAERAKFVVEKAEQEKQAAVIRAEG 191 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999998876653 45566666654444443
No 14
>smart00244 PHB prohibitin homologues. prohibitin homologues
Probab=99.97 E-value=4e-29 Score=222.81 Aligned_cols=157 Identities=52% Similarity=0.787 Sum_probs=150.2
Q ss_pred ceeEEecCCeEEEEEECCeeecCcccccceEEEccccceEEEEEeeeEEeecCCCccccCCCceEEEEEEEEEEecchHH
Q psy14362 208 VCFKVVQEYERAVIFRLGRLVSGGAKGPGIFFILPCMDSYVCVDLRTRTYDVPPQEVLTKDSVTVSVDAVVYYRVSNATI 287 (422)
Q Consensus 208 ~~~~~V~~ge~gVv~~fGk~~~~~v~~pGlh~~~P~i~~v~~v~~r~~~~~~~~~~~~T~D~~~V~V~~~V~yrI~d~~~ 287 (422)
+|||+|+|||+||+++||++.+ +.+||+||++||+++++.+|++.++++.+...++|+|++++++++++.|||.||.+
T Consensus 1 ~~~~~V~~g~~~v~~~~G~~~~--~~~pG~~~~~P~~~~~~~~~~~~~~~~~~~~~~~t~d~~~v~v~~~v~~rv~d~~~ 78 (160)
T smart00244 1 AAIKVVGEGEAGVVERLGRVLR--VLGPGLHFLIPFIDRVKKVDLRAQTDDVPPQEIITKDNVKVSVDAVVYYRVLDPLK 78 (160)
T ss_pred CcEEEEcccEEEEEEecCcccc--ccCCCEEEEecceeEEEEEeeEEEeecCCceEEEecCCcEEEEeEEEEEEEccHHH
Confidence 4899999999999999999995 79999999999999999999999999988878999999999999999999999999
Q ss_pred HHHhhcChH-HHHHHHHHHHHHHHhcccchhHHHh-hHHHHHHHHHHHHHHHhhcCCeEEEEEEeeccCCcHHHHHHHHH
Q psy14362 288 SVANVANAH-HSTKLLAQTTLRNVMGTRPLHEILS-EREAISNTMQLALDEATEDWGIKVERVEIKDVRLPVQLQRAMAA 365 (422)
Q Consensus 288 ~~~~~~~~~-~~l~~~~~~alR~vv~~~tld~ll~-~R~~i~~~i~~~L~~~l~~~GI~V~~V~I~~i~~P~~v~~Ai~~ 365 (422)
++++..+++ ..+++.+++++|+++++++++++++ +|+++++.+++.+++.+++||++|.+|+|+++++|+++++++++
T Consensus 79 ~~~~~~~~~~~~l~~~i~~~ir~~i~~~~~~~i~~~~r~~i~~~v~~~l~~~~~~~Gi~i~~v~i~~i~~p~~i~~ai~~ 158 (160)
T smart00244 79 AVYRVLDADYAVIEQLAQTTLRSVIGKMTLDELLTDEREKISENIREELNERAEAWGIEVEDVEIKDIRLPEEIQEAMEQ 158 (160)
T ss_pred HhhhcCCHHHHHHHHHHHHHHHHHHccccHHHHHHhhHHHHHHHHHHHHHHHHHhCCCEEEEEEEEecCCCHHHHHHHHh
Confidence 999998888 4899999999999999999999999 69999999999999999999999999999999999999999987
Q ss_pred H
Q psy14362 366 E 366 (422)
Q Consensus 366 ~ 366 (422)
+
T Consensus 159 k 159 (160)
T smart00244 159 Q 159 (160)
T ss_pred h
Confidence 5
No 15
>PF01145 Band_7: SPFH domain / Band 7 family; InterPro: IPR001107 Band 7 protein is an integral membrane protein which is thought to regulate cation conductance. A variety of proteins belong to this family. These include the prohibitins, cytoplasmic anti-proliferative proteins and stomatin, an erythrocyte membrane protein. Bacterial HflC protein also belongs to this family. Note: Band 4.1 (IPR021187 from INTERPRO) and Band 7 proteins refer to human erythrocyte membrane proteins separated by SDS polyacrylamide gels and stained with coomassie blue [].; PDB: 2RPB_A 3BK6_B 1WIN_A.
Probab=99.96 E-value=3.6e-29 Score=227.01 Aligned_cols=172 Identities=31% Similarity=0.512 Sum_probs=125.1
Q ss_pred EEecCCeEEEEEECCeeecCcccccceEEEccccceEEEEEeeeEEeecCC--CccccCCCceEEEEEEEEEEecchHHH
Q psy14362 211 KVVQEYERAVIFRLGRLVSGGAKGPGIFFILPCMDSYVCVDLRTRTYDVPP--QEVLTKDSVTVSVDAVVYYRVSNATIS 288 (422)
Q Consensus 211 ~~V~~ge~gVv~~fGk~~~~~v~~pGlh~~~P~i~~v~~v~~r~~~~~~~~--~~~~T~D~~~V~V~~~V~yrI~d~~~~ 288 (422)
|+|+||++||++++|++.+ +++||+||++||+++++.+|++.++++++. ..+.|+|+.++++++++.|+|.|+..+
T Consensus 1 ~~V~~g~~~V~~~~G~~~~--~~~~G~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~t~D~~~v~v~~~v~y~i~~~~~~ 78 (179)
T PF01145_consen 1 YTVPPGEVGVVVRFGKVKD--VLGPGLHFVIPFIQKVYVYPTRVQTIEFTREPITVRTKDGVPVDVDVTVTYRIEDPPKF 78 (179)
T ss_dssp ---------------------------------EEE--S--SS-EEEEEEE--EEEE-TTS-EEEEEEEEEEEES-CCCC
T ss_pred CEeCCCEEEEEEECCeEeE--EECCCeEEEeCCcCeEEEEeCEEEecccchhhhhhhhcccceeeeeEEEEEEechHHHH
Confidence 6899999999999999994 899999999999999999999999999887 789999999999999999999989888
Q ss_pred HHhh----cChHHHHHHHHHHHHHHHhcccchhHHHhhHHHHHHHHHHHHHHHhhcCCeEEEEEEeeccCCcHHHHHHHH
Q psy14362 289 VANV----ANAHHSTKLLAQTTLRNVMGTRPLHEILSEREAISNTMQLALDEATEDWGIKVERVEIKDVRLPVQLQRAMA 364 (422)
Q Consensus 289 ~~~~----~~~~~~l~~~~~~alR~vv~~~tld~ll~~R~~i~~~i~~~L~~~l~~~GI~V~~V~I~~i~~P~~v~~Ai~ 364 (422)
+.++ .+++..++..+++++|++++++++++++++|+++.+.+++.|++.+.+|||+|.+|+|+++++|+++.+++.
T Consensus 79 ~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~v~~~l~~~~~~~Gi~i~~v~i~~~~~~~~~~~~i~ 158 (179)
T PF01145_consen 79 VQNYEGGEEDPENLLRQIVESALREVISSYSLEEIYSNREEIADEVREQLQEALEEYGIEITSVQITDIDPPQEVEEAIE 158 (179)
T ss_dssp CCCCSS-HCHHHHHHHHHHHHHHHHHHHCS-HHHHHHTHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEECTTHHHHHH
T ss_pred HHhhhcchhhhhhhhhhhhhhhhheEeeeeehHHhhhhhhhhhHhHHHHHhhhccccEEEEEEEEEeecCCCHHHHHHHH
Confidence 7777 788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HHHHHHHhHHH
Q psy14362 365 AEAEATREA-RAKVIAAEGEH 384 (422)
Q Consensus 365 ~~~~Ae~ea-~A~i~~Ae~ea 384 (422)
+++.|++++ ++++.+|++||
T Consensus 159 ~~~~a~~~~~~~~~~~a~~ea 179 (179)
T PF01145_consen 159 EKQRAEQEAQQAEIERAEAEA 179 (179)
T ss_dssp HHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhCC
Confidence 999999999 78888888775
No 16
>KOG3090|consensus
Probab=99.96 E-value=2e-27 Score=215.31 Aligned_cols=218 Identities=21% Similarity=0.334 Sum_probs=189.7
Q ss_pred HHHHHHHHHHHhceeEEecCCeEEEEE-ECCeeecCcccccceEEEccccceEEEEEeeeEEeecCCCccccCCCceEEE
Q psy14362 196 FLVGITLPFSLFVCFKVVQEYERAVIF-RLGRLVSGGAKGPGIFFILPCMDSYVCVDLRTRTYDVPPQEVLTKDSVTVSV 274 (422)
Q Consensus 196 ~v~lv~~~~~~~~~~~~V~~ge~gVv~-~fGk~~~~~v~~pGlh~~~P~i~~v~~v~~r~~~~~~~~~~~~T~D~~~V~V 274 (422)
++++.+.++.+..++|.|+.|++++++ |+|.+.. .++..|.||.+|||++.+.||+|.+...+.+ +..|+|-+.|++
T Consensus 24 ~~~~G~~~y~v~~sl~nVdgGHRAI~fnRi~Gik~-~iy~EGtHf~iPwfe~pIiYDvRarP~~i~S-~tGskDLQmVnI 101 (290)
T KOG3090|consen 24 LLIGGLGAYGVTQSLYNVDGGHRAIVFNRIGGIKD-DIYPEGTHFRIPWFERPIIYDVRARPRLISS-PTGSKDLQMVNI 101 (290)
T ss_pred HHHhchhhheecceeEeecCCceEEEEeccccchh-ccccCCceEeeeccccceeeeeccCcccccC-CCCCcceeEEEe
Confidence 344445556677899999999999999 8998887 6999999999999999999999999988775 678999999999
Q ss_pred EEEEEEEecchH-HHHHhh--cChH-HHHHHHHHHHHHHHhcccchhHHHhhHHHHHHHHHHHHHHHhhcCCeEEEEEEe
Q psy14362 275 DAVVYYRVSNAT-ISVANV--ANAH-HSTKLLAQTTLRNVMGTRPLHEILSEREAISNTMQLALDEATEDWGIKVERVEI 350 (422)
Q Consensus 275 ~~~V~yrI~d~~-~~~~~~--~~~~-~~l~~~~~~alR~vv~~~tld~ll~~R~~i~~~i~~~L~~~l~~~GI~V~~V~I 350 (422)
...|--|..... ..+|.. .|++ ..+-+++.+.|++|+++|+..+++++|+.++..+++.|.++..++.|.+++|+|
T Consensus 102 ~lRVLsRP~~~~Lp~iyrtLG~~y~ERVLPSIinEvLKaVVAqfNASqLITQRe~VSrliRk~L~eRA~~Fni~LDDVSi 181 (290)
T KOG3090|consen 102 GLRVLSRPMADQLPEIYRTLGQNYDERVLPSIINEVLKAVVAQFNASQLITQREQVSRLIRKILTERAADFNIALDDVSI 181 (290)
T ss_pred eeEEecCCChhhhHHHHHHhccCcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhccceEeeccee
Confidence 999998884222 244443 4554 557788999999999999999999999999999999999999999999999999
Q ss_pred eccCCcHHHHHHHHHHHHHHH--------------HHHHHHHHHhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhh
Q psy14362 351 KDVRLPVQLQRAMAAEAEATR--------------EARAKVIAAEGEHKASRALREASEVISDSPAALQLRYLQFQYSKF 416 (422)
Q Consensus 351 ~~i~~P~~v~~Ai~~~~~Ae~--------------ea~A~i~~Ae~ea~aa~~~aeAa~~l~~~p~~~~lr~lE~~~~~l 416 (422)
+++++.+++.+|+++++.|++ +++..+.+|+||+++|+..++| ++.||.++.||.||+-.++.
T Consensus 182 T~l~F~~efTaAiEaKQvA~QeAqRA~F~VekA~qek~~~ivrAqGEaksAqliGeA---i~nn~~fi~Lrki~aAr~IA 258 (290)
T KOG3090|consen 182 TELTFGKEFTAAIEAKQVAAQEAQRAKFIVEKAEQEKQSAIVRAQGEAKSAQLIGEA---IKNNPAFITLRKIEAAREIA 258 (290)
T ss_pred eeeecCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhhccchHHHHHHHHH---HhCCccceeehhHHHHHHHH
Confidence 999999999999998777554 5566788999999999999999 89999999999999988876
Q ss_pred hh
Q psy14362 417 SA 418 (422)
Q Consensus 417 ~~ 418 (422)
.-
T Consensus 259 ~t 260 (290)
T KOG3090|consen 259 QT 260 (290)
T ss_pred HH
Confidence 53
No 17
>KOG2620|consensus
Probab=99.96 E-value=2.5e-29 Score=232.88 Aligned_cols=175 Identities=34% Similarity=0.562 Sum_probs=162.4
Q ss_pred EEecCCeEEEEEECCeeecCcccccceEEEccccceEE-EEEeeeEEeecCCCccccCCCceEEEEEEEEEEecchHH--
Q psy14362 211 KVVQEYERAVIFRLGRLVSGGAKGPGIFFILPCMDSYV-CVDLRTRTYDVPPQEVLTKDSVTVSVDAVVYYRVSNATI-- 287 (422)
Q Consensus 211 ~~V~~ge~gVv~~fGk~~~~~v~~pGlh~~~P~i~~v~-~v~~r~~~~~~~~~~~~T~D~~~V~V~~~V~yrI~d~~~-- 287 (422)
..||+.+++|+.||||+. ++++||+||.+|+++++. ..+++......+.+...|+|++.|.++++++|||.||++
T Consensus 10 ~~VpQ~~a~VvER~GkF~--~iLePG~~fl~p~~d~i~~v~~lkeia~~~~~q~aiTkDNV~v~idgvly~rv~dp~~~d 87 (301)
T KOG2620|consen 10 RFVPQQEAAVVERFGKFH--RILEPGLHFLPPVIDKIAYVHSLKEIAILDPKQEAITKDNVFVQIDGVLYYRVVDPYADD 87 (301)
T ss_pred EeechhHhHHHHHhhhhh--hhcCCcceechhhhhhHHHHHHHHHHhhcccccceeecccEEEEEEEEEEEEEecccccc
Confidence 359999999999999999 599999999999988764 334555556667789999999999999999999999999
Q ss_pred HHHhhcChHHHHHHHHHHHHHHHhcccchhHHHhhHHHHHHHHHHHHHHHhhcCCeEEEEEEeeccCCcHHHHHHHHHHH
Q psy14362 288 SVANVANAHHSTKLLAQTTLRNVMGTRPLHEILSEREAISNTMQLALDEATEDWGIKVERVEIKDVRLPVQLQRAMAAEA 367 (422)
Q Consensus 288 ~~~~~~~~~~~l~~~~~~alR~vv~~~tld~ll~~R~~i~~~i~~~L~~~l~~~GI~V~~V~I~~i~~P~~v~~Ai~~~~ 367 (422)
+.|.++||+..+.+++++.+|+.++++++|.++.+|+.++..|.+.+++.+..||+++....|.||.||+.+.+||+...
T Consensus 88 AsYgvenp~~aI~qlaqttmRsevgkltLD~vFeer~~ln~sI~eainkA~~~wG~~clr~eIrDI~pp~~V~~AM~~q~ 167 (301)
T KOG2620|consen 88 ASYGVENPEYAIQQLAQTTMRSEVGKLTLDKVFEERNSLNKSIVEAINKAMEAWGYECLRYEIRDIEPPPSVKRAMNMQN 167 (301)
T ss_pred cccccCCHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHH
Q psy14362 368 EATREARAKVIAAEGEHKAS 387 (422)
Q Consensus 368 ~Ae~ea~A~i~~Ae~ea~aa 387 (422)
+|++.+.|.+.++||++.++
T Consensus 168 ~AeR~krAailesEger~~~ 187 (301)
T KOG2620|consen 168 EAERMKRAAILESEGERIAQ 187 (301)
T ss_pred HHHHHHHHHHhhhhhhhHHh
Confidence 99999999988888888764
No 18
>KOG2621|consensus
Probab=99.90 E-value=3.8e-24 Score=200.85 Aligned_cols=94 Identities=37% Similarity=0.406 Sum_probs=92.7
Q ss_pred chHHhhhhhHHHHHHHHHHhhhhcCCc----ceEEeccCCCcHHHHHHHHHHhhchhhhhhhHHHHhhchHHHHHHHHHH
Q psy14362 3 DSRDDMMETEINNHAIVVTNDVAHNNK----DRQKIFGDQLKVSIMHAGGREFDRGQKIDKRYIFIAAEGEHKASRALRE 78 (422)
Q Consensus 3 ~~~~~l~~r~~i~~~i~~~~~~~~~~w----~~vei~di~~~~~~~~am~~~~~ae~~r~~~a~~~~a~~~~~~~~~~~~ 78 (422)
-|.++|++|+.|.++++..+|+.|++| +|||||||.+|.++|++|+.+|+| -|+.||++|+||||..|++.+++
T Consensus 160 ~L~eils~r~~is~~~~~~Ld~~T~~WGvkVeRVEikDvrlp~qlqramaaeAeA--~reA~Akviaaege~~as~al~~ 237 (288)
T KOG2621|consen 160 TLSEILSSREVIAQEAQKALDEATEPWGVKVERVEIKDVRLPAQLQRAMAAEAEA--TREARAKVIAAEGEKKASEALKE 237 (288)
T ss_pred cHHHHHHhHHHHHHHHHHHhhhcccccceEEEEEEEeeeechHhhhhhhhchhhh--hhhhhhhHHHHHhhhHHHHHHHH
Confidence 488999999999999999999999999 999999999999999999999999 89999999999999999999999
Q ss_pred HHHHhccChhHhhhhhhhcc
Q psy14362 79 ASEVISDSPAALQLRYLQIP 98 (422)
Q Consensus 79 a~~~~~~~~~a~~lr~l~~~ 98 (422)
|+++++.||.|+||||||+|
T Consensus 238 aa~v~~~sp~alqLryLqtl 257 (288)
T KOG2621|consen 238 AADVISESPIALQLRYLQTL 257 (288)
T ss_pred hhccccCCchhhhhhhhhcc
Confidence 99999999999999999999
No 19
>KOG3083|consensus
Probab=99.86 E-value=9.9e-22 Score=178.36 Aligned_cols=210 Identities=22% Similarity=0.326 Sum_probs=171.7
Q ss_pred HHHhceeEEecCCeEEEEE-ECCeeecCcccccceEEEccccceEEEEEeeeEEeecCCCccccCCCceEEEEEEEEEEe
Q psy14362 204 FSLFVCFKVVQEYERAVIF-RLGRLVSGGAKGPGIFFILPCMDSYVCVDLRTRTYDVPPQEVLTKDSVTVSVDAVVYYRV 282 (422)
Q Consensus 204 ~~~~~~~~~V~~ge~gVv~-~fGk~~~~~v~~pGlh~~~P~i~~v~~v~~r~~~~~~~~~~~~T~D~~~V~V~~~V~yrI 282 (422)
..+-+.+|.|+.|+++|++ ||..+.+ .+.+.|-||.+||.++.+.+|.|.+...++. ...|+|-+.|++...+.||.
T Consensus 21 ~~~~s~ly~vdgg~ravifdrf~gv~~-~vvgegthflipw~qk~~i~d~rs~p~~v~~-itGskdLQ~VniTlril~rp 98 (271)
T KOG3083|consen 21 GVVNSALYNVDGGHRAVIFDRFRGVQD-QVVGEGTHFLIPWVQKPIIFDCRSRPRNVPV-ITGSKDLQNVNITLRILFRP 98 (271)
T ss_pred hhhhhhhcccCCCceeEEeecccchhh-hcccCCceeeeeeccCcEEEeccCCCccccc-ccCchhhhcccceEEEEecc
Confidence 3456889999999999999 8877766 7999999999999999999999999887764 56799999999999999987
Q ss_pred cch-HHHHHhh--cChH-HHHHHHHHHHHHHHhcccchhHHHhhHHHHHHHHHHHHHHHhhcCCeEEEEEEeeccCCcHH
Q psy14362 283 SNA-TISVANV--ANAH-HSTKLLAQTTLRNVMGTRPLHEILSEREAISNTMQLALDEATEDWGIKVERVEIKDVRLPVQ 358 (422)
Q Consensus 283 ~d~-~~~~~~~--~~~~-~~l~~~~~~alR~vv~~~tld~ll~~R~~i~~~i~~~L~~~l~~~GI~V~~V~I~~i~~P~~ 358 (422)
.-. ..++|.. .||| ..+-.+..+.|++|+++++..+++++|+.++..+.+.+.+....+|+.+++|.|+.+++-.+
T Consensus 99 ~~sqLP~If~~~G~dyDErVLpsI~~eiLKsVVa~FdA~eliTqRe~vS~~v~~~lt~rA~~Fgl~LddvsiThltfGkE 178 (271)
T KOG3083|consen 99 VVSQLPCIFTSIGEDYDERVLPSITTEILKSVVARFDAGELITQRELVSRQVSNDLTERAATFGLILDDVSITHLTFGKE 178 (271)
T ss_pred cccccchHHHhhcccccccccccchHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHhhCeeechhhhhhhhhhHH
Confidence 433 2345544 4555 45667788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH--------------HHHHHHhHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhhhhh
Q psy14362 359 LQRAMAAEAEATREAR--------------AKVIAAEGEHKASRALREASEVISDS-PAALQLRYLQFQYSKFSA 418 (422)
Q Consensus 359 v~~Ai~~~~~Ae~ea~--------------A~i~~Ae~ea~aa~~~aeAa~~l~~~-p~~~~lr~lE~~~~~l~~ 418 (422)
+.+|++++|.|++|++ |.++.|||++++++..+++ ++.. .-++++|.+|+-.++...
T Consensus 179 Ft~AvE~KQVAQQEAErarFvVeKAeQqk~aavIsAEGds~aA~li~~s---la~aG~gLielrrlEAa~dia~~ 250 (271)
T KOG3083|consen 179 FTEAVEAKQVAQQEAERARFVVEKAEQQKKAAVISAEGDSKAAELIANS---LATAGDGLIELRRLEAAEDIAYQ 250 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeecccchHHHHHHHHH---HhhcCCceeeehhhhhHHHHHHH
Confidence 9999999888776655 4445555555555555544 3333 556789999988877654
No 20
>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.84 E-value=5.9e-20 Score=171.32 Aligned_cols=158 Identities=18% Similarity=0.278 Sum_probs=134.5
Q ss_pred hceeEEecCCeEEEEEECCeeecCcccccceEEEc----ccc---------------ceEEEEEeeeEEeec--CCC---
Q psy14362 207 FVCFKVVQEYERAVIFRLGRLVSGGAKGPGIFFIL----PCM---------------DSYVCVDLRTRTYDV--PPQ--- 262 (422)
Q Consensus 207 ~~~~~~V~~ge~gVv~~fGk~~~~~v~~pGlh~~~----P~i---------------~~v~~v~~r~~~~~~--~~~--- 262 (422)
+++.++|++||.||++++||+.+ +++||.|+.+ |++ ..|+.+|.+.+.... .+.
T Consensus 13 ~~s~~iV~e~~~av~~~~Gk~~~--~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 90 (207)
T cd03408 13 NGSQLIVREGQAAVFVNEGKVAD--VFAPGGYYLTTNNLPVLAFLLSGDKGFSSPFKGEVYFFNTRVFTDLLWGTPAPVF 90 (207)
T ss_pred cCCEEEEcCCcEEEEEECCEEEE--EecCCcceeeecCccHHHHhcChhhhCcCCceeEEEEEECEEEeccccCCCCCee
Confidence 46889999999999999999995 6778777544 443 347788888776531 111
Q ss_pred -ccccCCCceEEEEEEEEEEecchHHHHHhhc---------ChHHHHHHHHHHHHHHHhcccchhHHHhh--HHHHHHHH
Q psy14362 263 -EVLTKDSVTVSVDAVVYYRVSNATISVANVA---------NAHHSTKLLAQTTLRNVMGTRPLHEILSE--REAISNTM 330 (422)
Q Consensus 263 -~~~T~D~~~V~V~~~V~yrI~d~~~~~~~~~---------~~~~~l~~~~~~alR~vv~~~tld~ll~~--R~~i~~~i 330 (422)
...|.|+++|.+++++.|||.||.+++.++. +....++..+++++|++++++++++++.+ |++|++.+
T Consensus 91 ~~~~~~~~v~v~v~~~~~~kI~Dp~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~lr~~i~~~~~~~l~~~~~r~~i~~~v 170 (207)
T cd03408 91 GRDSEFGGVPLRAFGTYSLKVTDPVLFVTNIVGTRGLFTVEDLEKSLRALIVAALSSALSESGLAVMLLAANRDELSKAV 170 (207)
T ss_pred eeCCccceEEEEeeEEEEEEEcCHHHHHHHhcCCCcceeHHHHHHHHHHHHHHHHHHHHHhcCCeeEEhhhhHHHHHHHH
Confidence 2457888999999999999999999987773 35568999999999999999999999986 99999999
Q ss_pred HHHHHHHhhcCCeEEEEEEeeccCCcHHHHHHHHHH
Q psy14362 331 QLALDEATEDWGIKVERVEIKDVRLPVQLQRAMAAE 366 (422)
Q Consensus 331 ~~~L~~~l~~~GI~V~~V~I~~i~~P~~v~~Ai~~~ 366 (422)
++.+++.+++||++|.+|.|+++.+|+++++++.++
T Consensus 171 ~~~l~~~~~~~Gi~i~~v~I~~i~~p~e~~~ai~~r 206 (207)
T cd03408 171 REALAPWFASFGLELVSVYIESISYPDEVQKLIDKR 206 (207)
T ss_pred HHHHHHHHHhcCcEEEEEEEEeecCCHHHHHHHHhh
Confidence 999999999999999999999999999999999764
No 21
>KOG2962|consensus
Probab=99.78 E-value=4.8e-17 Score=148.65 Aligned_cols=167 Identities=20% Similarity=0.280 Sum_probs=134.9
Q ss_pred HHHHHHHHHHhceeEEecCCeEEEEEECCeeecCcccccceEEEccccceEEEEEeeeEEeecCCCccccCCCceEEEEE
Q psy14362 197 LVGITLPFSLFVCFKVVQEYERAVIFRLGRLVSGGAKGPGIFFILPCMDSYVCVDLRTRTYDVPPQEVLTKDSVTVSVDA 276 (422)
Q Consensus 197 v~lv~~~~~~~~~~~~V~~ge~gVv~~fGk~~~~~v~~pGlh~~~P~i~~v~~v~~r~~~~~~~~~~~~T~D~~~V~V~~ 276 (422)
.+..+++.++++.+..|++|+.||.+|-|.... .+.+||+|..+||+.++..|.+..|+-++...+|.|+.|+.+.+|-
T Consensus 10 ~~~a~~~~~~~s~vHkieEGHvgvYyRGGALL~-~~t~PG~Hl~lPFiTt~ksVQvTLQTDev~nvPCGTsGGVlIyfdr 88 (322)
T KOG2962|consen 10 AAIALLVAFLSSAVHKIEEGHVGVYYRGGALLT-SITGPGFHLMLPFITTYKSVQVTLQTDEVKNVPCGTSGGVLIYFDR 88 (322)
T ss_pred HHHHHHHHHHHHHHhhcccCceEEEEecceeee-ccCCCCcEEEeeeeeceeeeEEEeeccccccCCCCCCCcEEEEEeh
Confidence 334445556778899999999999999999876 6899999999999999999999999988888899999999887762
Q ss_pred E-EEEEec-ch-HHHHHhh-cCh-HHHHHHHHHHHHHHHhcccchhHHHhh-HHHHHHHHHHHHHHHhhcC--CeEEEEE
Q psy14362 277 V-VYYRVS-NA-TISVANV-ANA-HHSTKLLAQTTLRNVMGTRPLHEILSE-REAISNTMQLALDEATEDW--GIKVERV 348 (422)
Q Consensus 277 ~-V~yrI~-d~-~~~~~~~-~~~-~~~l~~~~~~alR~vv~~~tld~ll~~-R~~i~~~i~~~L~~~l~~~--GI~V~~V 348 (422)
. |.-+.. |. .+-+.|. .|+ ...+-+-+..-+...++.+|+.+++-+ .++|.+.++..|+.+|..+ |++|..|
T Consensus 89 IEVVN~L~~d~Vydiv~NYtvdYD~~lIfnKiHHE~NQFCS~HtLQeVYIdlFDqIDE~lK~ALQ~Dl~~mAPGl~iqaV 168 (322)
T KOG2962|consen 89 IEVVNFLRPDAVYDIVKNYTVDYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKDALQADLTRMAPGLEIQAV 168 (322)
T ss_pred hhhhhhhchhHHHHHHHHcccCCcchhhhhHHHHHHHhHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEE
Confidence 2 211221 11 1112222 244 345677788888999999999999986 8999999999999999987 9999999
Q ss_pred EeeccCCcHHHHHHHH
Q psy14362 349 EIKDVRLPVQLQRAMA 364 (422)
Q Consensus 349 ~I~~i~~P~~v~~Ai~ 364 (422)
.++....|+.+...++
T Consensus 169 RVTKPkIPEaiRrN~E 184 (322)
T KOG2962|consen 169 RVTKPKIPEAIRRNFE 184 (322)
T ss_pred EecCCCChHHHHHhHH
Confidence 9999999999988874
No 22
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.74 E-value=2e-16 Score=162.96 Aligned_cols=180 Identities=17% Similarity=0.243 Sum_probs=148.1
Q ss_pred ceeEEecCCeEEEEEECCe-------eecCcccccceEEEccccceEEEEEeeeEEeecCCCccccCCCceEEEEEEEEE
Q psy14362 208 VCFKVVQEYERAVIFRLGR-------LVSGGAKGPGIFFILPCMDSYVCVDLRTRTYDVPPQEVLTKDSVTVSVDAVVYY 280 (422)
Q Consensus 208 ~~~~~V~~ge~gVv~~fGk-------~~~~~v~~pGlh~~~P~i~~v~~v~~r~~~~~~~~~~~~T~D~~~V~V~~~V~y 280 (422)
..||+..+...++|..+++ ..+..++.+|+||++|+++...++|++...+++....+.|+||.++++++.++.
T Consensus 32 ~~~y~~a~~~~aLI~~g~~~g~~~~~g~~~~vV~gGg~~v~Pi~q~~~r~~l~~i~l~v~~~~v~t~Dg~p~~v~~~a~v 111 (548)
T COG2268 32 KRFYIIARPNEALIRTGSKLGSKDEAGGGQKVVRGGGAIVMPIFQTIERMSLTTIKLEVEIDNVYTKDGMPLNVEAVAYV 111 (548)
T ss_pred heeEEecCCCceEEEeccccCCcccccCCccEEecCceEEecceeeeEEeeeeeeeeeeeeeeeEecCCCccceeEEEEE
Confidence 3677776666666665521 122268999999999999999999999999998877899999999999999999
Q ss_pred EecchHHHHHh----h--c----ChHHHHHHHHHHHHHHHhcccchhHHHhhHHHHHHHHHHHHHHHhhcCCeEEEEEEe
Q psy14362 281 RVSNATISVAN----V--A----NAHHSTKLLAQTTLRNVMGTRPLHEILSEREAISNTMQLALDEATEDWGIKVERVEI 350 (422)
Q Consensus 281 rI~d~~~~~~~----~--~----~~~~~l~~~~~~alR~vv~~~tld~ll~~R~~i~~~i~~~L~~~l~~~GI~V~~V~I 350 (422)
+|.|....+.+ + . +....++...++++|.+++++|+.++..+|..|+..+.+.+..+|...|+.|+++.|
T Consensus 112 ~i~~~~~dI~~aae~~g~Kg~~~~l~~~~~~~l~~~lR~i~a~~t~~el~edR~~F~~~V~~~v~~dL~k~Gl~l~s~~I 191 (548)
T COG2268 112 KIGDTFQDIATAAERFGGKGSREDLEQLAEDTLEGALRAVLAQMTVEELNEDRLGFAQVVQEVVGDDLSKMGLVLDSLAI 191 (548)
T ss_pred EecCCHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHhhHHhhHHHHHHHHHHHHHHhcCeeeeeeee
Confidence 99776553322 2 2 445667788999999999999999999999999999999999999999999999999
Q ss_pred eccCCc-------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy14362 351 KDVRLP-------VQLQRAMAAEAEATREARAKVIAAEGEHKAS 387 (422)
Q Consensus 351 ~~i~~P-------~~v~~Ai~~~~~Ae~ea~A~i~~Ae~ea~aa 387 (422)
.++..+ ..+.++...+..++-.+.+.+.+++.+.+..
T Consensus 192 ~~i~d~~~~~~d~~~yLda~G~r~i~qv~~~a~ia~~E~~~~t~ 235 (548)
T COG2268 192 NDINDTSKENQDPNNYLDALGRRRIAQVLQDAEIAENEAEKETE 235 (548)
T ss_pred cccccccccccChhhhhhhcChHHHHHHHHHHHHHHhhhhhhhH
Confidence 999998 8899998887777776666666666655543
No 23
>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.69 E-value=2.3e-16 Score=135.62 Aligned_cols=116 Identities=23% Similarity=0.377 Sum_probs=101.4
Q ss_pred EEeeeEEeecCCCccccCCCceEEEEEEEEEEecchHHHH-H-hh-c-ChHHHHHHHHHHHHHHHhcccchhHHHh-hHH
Q psy14362 250 VDLRTRTYDVPPQEVLTKDSVTVSVDAVVYYRVSNATISV-A-NV-A-NAHHSTKLLAQTTLRNVMGTRPLHEILS-ERE 324 (422)
Q Consensus 250 v~~r~~~~~~~~~~~~T~D~~~V~V~~~V~yrI~d~~~~~-~-~~-~-~~~~~l~~~~~~alR~vv~~~tld~ll~-~R~ 324 (422)
||+|.++.+. +..++|+|++.+.++++++|||.++..+. + +. . ..+..+++.+++++|+++|+++++++++ +|+
T Consensus 3 ~~~r~~~~~~-~~~v~T~D~~~v~vd~~v~y~V~~~~~~~~~~~~~~~~~~~~i~~~~~~~lR~~~~~~~~~e~i~~~R~ 81 (124)
T cd03400 3 YSTRLQEVDE-KIDVLSKEGLSINADVSVQYRINPNKAAAVHSKLGTDYARKIVRPTFRSLVREVTGRYTAEQIYSTKRK 81 (124)
T ss_pred ccceeeeccc-ceEEECCCCCEEEEEEEEEEEEChhhHHHHHHHhCcchhheeechhHHHHHHHHhcCCCHHHHhhhhHH
Confidence 6788888774 46899999999999999999997666532 2 22 2 2445789999999999999999999997 799
Q ss_pred HHHHHHHHHHHHHhhcCCeEEEEEEeeccCCcHHHHHHHHHH
Q psy14362 325 AISNTMQLALDEATEDWGIKVERVEIKDVRLPVQLQRAMAAE 366 (422)
Q Consensus 325 ~i~~~i~~~L~~~l~~~GI~V~~V~I~~i~~P~~v~~Ai~~~ 366 (422)
+|.+.+++.+++.+++|||.|.+|+|++++||+++.+|++++
T Consensus 82 ~i~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~P~~v~~aI~~k 123 (124)
T cd03400 82 EIESAIKKELIEEFVGDGLILEEVLLRNIKLPDQIADAIEAK 123 (124)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEEEecccCCHHHHHHHHhc
Confidence 999999999999999999999999999999999999999875
No 24
>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. These two proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and, interact with a variety of proteins. Flotillins may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis.
Probab=99.69 E-value=1.8e-16 Score=137.09 Aligned_cols=115 Identities=23% Similarity=0.350 Sum_probs=104.1
Q ss_pred EEeeeEEeecCCCccccCCCceEEEEEEEEEEecchHHHHHhh---------cChHHHHHHHHHHHHHHHhcccchhHHH
Q psy14362 250 VDLRTRTYDVPPQEVLTKDSVTVSVDAVVYYRVSNATISVANV---------ANAHHSTKLLAQTTLRNVMGTRPLHEIL 320 (422)
Q Consensus 250 v~~r~~~~~~~~~~~~T~D~~~V~V~~~V~yrI~d~~~~~~~~---------~~~~~~l~~~~~~alR~vv~~~tld~ll 320 (422)
+|+|.+.++++.+.++|+|+.+++|++++.|||.||.+++... .+....+.+.+++++|+++|++++++++
T Consensus 2 ~~lr~~~~~~~~q~v~TkD~~~v~vd~~~~~rV~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lR~~ig~~tl~el~ 81 (128)
T cd03399 2 LSLTSMVLRVGSEAVITRDGVRVDVTAVFQVKVGGTEEAIATAAERFLGKSEEEIEELVKEVLEGHLRAVVGTMTVEEIY 81 (128)
T ss_pred ccccceeeeccccceecCCCcEEEEEEEEEEEeCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 5788999999999999999999999999999999999765332 3356778888899999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCeEEEEEEeeccCCcHHHHHHHH
Q psy14362 321 SEREAISNTMQLALDEATEDWGIKVERVEIKDVRLPVQLQRAMA 364 (422)
Q Consensus 321 ~~R~~i~~~i~~~L~~~l~~~GI~V~~V~I~~i~~P~~v~~Ai~ 364 (422)
++|++|..++.+.++..+++||++|.+|+|+++++|+.+.+++.
T Consensus 82 ~~R~~i~~~i~~~v~~~~~~~Gi~i~~v~I~~i~~~~~~~~~~~ 125 (128)
T cd03399 82 EDRDKFAEQVQEVVAPDLNKMGLELDSFTIKDITDTDGYLNNLG 125 (128)
T ss_pred HhHHHHHHHHHHHHHHHHHHCCCEEEEEeeEEecCCCCCHHHcC
Confidence 99999999999999999999999999999999999999877664
No 25
>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins. This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role i
Probab=99.60 E-value=2.5e-14 Score=120.49 Aligned_cols=115 Identities=45% Similarity=0.686 Sum_probs=104.3
Q ss_pred eeeEEeecCCCccccCCCceEEEEEEEEEEecchHHHHHhhcChH--HHHHHHHHHHHHHHhcccchhHHHhhHHHHHHH
Q psy14362 252 LRTRTYDVPPQEVLTKDSVTVSVDAVVYYRVSNATISVANVANAH--HSTKLLAQTTLRNVMGTRPLHEILSEREAISNT 329 (422)
Q Consensus 252 ~r~~~~~~~~~~~~T~D~~~V~V~~~V~yrI~d~~~~~~~~~~~~--~~l~~~~~~alR~vv~~~tld~ll~~R~~i~~~ 329 (422)
.+..+.+.....++|+|+.++++++++.|+|.||..++++..++. ..+...+.+++|+++++++++++.++|+++++.
T Consensus 4 ~~~~~~~~~~~~~~t~d~~~i~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~i~~~ 83 (121)
T cd02106 4 LRRQTLDVPPQEVLTKDNVPVRVDAVVQYRVVDPVKALYNVRDPEDEEALRQLAQSALRSVIGKMTLDELLEDRDEIAAE 83 (121)
T ss_pred ceeEEecCCCceEEecCCCEEEEEEEEEEEEeCHHHHHHhcCCccHHHHHHHHHHHHHHHHHccccHHHHHhhHHHHHHH
Confidence 344455666678999999999999999999999997777776665 789999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCeEEEEEEeeccCCcHHHHHHHHHH
Q psy14362 330 MQLALDEATEDWGIKVERVEIKDVRLPVQLQRAMAAE 366 (422)
Q Consensus 330 i~~~L~~~l~~~GI~V~~V~I~~i~~P~~v~~Ai~~~ 366 (422)
+++.+...++.||++|.+|.|+++++|+++.+++.++
T Consensus 84 v~~~l~~~~~~~Gi~i~~v~i~~i~~~~~~~~ai~~~ 120 (121)
T cd02106 84 VREALQEDLDKYGIEVVDVRIKDIDPPEEVQEAMEDR 120 (121)
T ss_pred HHHHHHHHHHhcCCEEEEEEEEecCCCHHHHHHHHhh
Confidence 9999999999999999999999999999999999865
No 26
>KOG2668|consensus
Probab=99.60 E-value=4.7e-14 Score=136.05 Aligned_cols=190 Identities=16% Similarity=0.176 Sum_probs=152.8
Q ss_pred eEEecCCeEEEEEECCeeecCcccccceEEEccccceEEEEEeeeEEeecCCCccccCCCceEEEEEEEEEEe--cchHH
Q psy14362 210 FKVVQEYERAVIFRLGRLVSGGAKGPGIFFILPCMDSYVCVDLRTRTYDVPPQEVLTKDSVTVSVDAVVYYRV--SNATI 287 (422)
Q Consensus 210 ~~~V~~ge~gVv~~fGk~~~~~v~~pGlh~~~P~i~~v~~v~~r~~~~~~~~~~~~T~D~~~V~V~~~V~yrI--~d~~~ 287 (422)
|++..+++..++..+|.-.. .....| |.+|| +++.++|+...++++....+.|+.|+++.|.+.++..| .|+..
T Consensus 2 f~~~~~~~~l~itg~g~~~~-~lv~~~--wvf~w-q~~q~~~ln~mtl~~~~e~v~tsegvP~~vtgVaqvki~~~~~~e 77 (428)
T KOG2668|consen 2 FKVAGASQYLAITGGGIEDI-KLVKKS--WVFPW-QQCTVFDVSPMTLTFKVENVMTSEGVPFVVTGVAQVKIRVDDADE 77 (428)
T ss_pred CccCCccceEEeecccccCc-eecccc--eeeee-eeeeEEeecceeeeeecchhhcccCCceEeeeeEEEeeccCCHHH
Confidence 56777888888888886543 333344 77788 89999999999999887779999999999999988877 45444
Q ss_pred HHH---------hhcChHHHHHHHHHHHHHHHhcccchhHHHhhHHHHHHHHHHHHHHHhhcCCeEEEEEEeeccCCcH-
Q psy14362 288 SVA---------NVANAHHSTKLLAQTTLRNVMGTRPLHEILSEREAISNTMQLALDEATEDWGIKVERVEIKDVRLPV- 357 (422)
Q Consensus 288 ~~~---------~~~~~~~~l~~~~~~alR~vv~~~tld~ll~~R~~i~~~i~~~L~~~l~~~GI~V~~V~I~~i~~P~- 357 (422)
.+. +..+....+..++++..|.+++++|++++|.+|.++...+.+..+.+|.++||+|.+++|.++...+
T Consensus 78 lL~~A~e~flgK~~~eIn~~vl~tlEGh~Rai~asmTvEEIyKdrk~F~k~Vfeva~~dl~~mGi~I~s~tiKdl~D~~g 157 (428)
T KOG2668|consen 78 LLLYACEQFLGKSSNEINELVLGTLEGHTRAILASMTVEEIYKDRKEFKKEVFEVAQLDLGQMGIVIYSATIKDLVDVPG 157 (428)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhhhHHHHHHHhccHHHHHhhHHHHHHHHHHHhhhhhhhcceEEEEeEhhhhhcccc
Confidence 221 1234566778889999999999999999999999999999999999999999999999999998766
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH------HHHHHHHHHHhcCHHH
Q psy14362 358 -QLQRAMAAEAEATREARAKVIAAEGEHKAS------RALREASEVISDSPAA 403 (422)
Q Consensus 358 -~v~~Ai~~~~~Ae~ea~A~i~~Ae~ea~aa------~~~aeAa~~l~~~p~~ 403 (422)
+|...+.....|+-.++|++-.||+++++- .....++++.+++...
T Consensus 158 ~~YlssLGka~taev~rdArIgvAEAk~eaGikEa~~~~~~~aak~~aetkI~ 210 (428)
T KOG2668|consen 158 HEYLSSLGKATTAEVARDARIGVAEAKREAGIKEATGLTEQNAAKIDAETKIA 210 (428)
T ss_pred hHHHHHhhhHHHHHHHhhcccchHHhhhhcchhhhhHHHHHhHHhhhhhhhHH
Confidence 799999999999988888888888877662 3333445555555433
No 27
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local
Probab=99.51 E-value=5.1e-14 Score=132.18 Aligned_cols=110 Identities=28% Similarity=0.262 Sum_probs=105.0
Q ss_pred CchHHhhhhhHHHHHHHHHHhhhhcCCc----ceEEeccCCCcHHHHHHHHHHhhchhhhhhhHHHHhhchHHHHHHHHH
Q psy14362 2 SDSRDDMMETEINNHAIVVTNDVAHNNK----DRQKIFGDQLKVSIMHAGGREFDRGQKIDKRYIFIAAEGEHKASRALR 77 (422)
Q Consensus 2 ~~~~~~l~~r~~i~~~i~~~~~~~~~~w----~~vei~di~~~~~~~~am~~~~~ae~~r~~~a~~~~a~~~~~~~~~~~ 77 (422)
.++++++++|+.|++.|++.++...++| .+|.|+||.+|++++++|...++| +|+++|+++.|+||.++++..+
T Consensus 101 ~~~~el~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~i~~i~~p~~~~~ai~~~~~A--~~~~~a~i~~A~ge~~a~~~~a 178 (215)
T cd03403 101 MELDELLSEREEINAELVEILDEATDPWGVKVERVEIKDIILPQEIQEAMAKQAEA--EREKRAKIIEAEGERQAAILLA 178 (215)
T ss_pred ccHHHHHhhHHHHHHHHHHHHHHHHhccCeEEEEEEEeeecCCHHHHHHHHHHHHH--HHHHHHHHHHhHHHHHHHHHHH
Confidence 4689999999999999999999999999 999999999999999999999999 7999999999999999999999
Q ss_pred HHHHHhccChhHhhhhhhhccCCCCccccccccccCCceEEEe
Q psy14362 78 EASEVISDSPAALQLRYLQIPGVPKGTFQPYLGRINKVPIFIG 120 (422)
Q Consensus 78 ~a~~~~~~~~~a~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (422)
||.+....||.++++|+++.+ ..++++.+.++||.|
T Consensus 179 ea~~~~~~~~~~~~~~~~e~~-------~~~~~~~~~~~~~~~ 214 (215)
T cd03403 179 EAAKQAAINPAALQLRELETL-------EEIAKEAASTVVFPA 214 (215)
T ss_pred HHHHHHccCHHHHHHHHHHHH-------HHHHhccCCeEEeeC
Confidence 999999889999999999999 888888898888876
No 28
>KOG2620|consensus
Probab=99.47 E-value=3.9e-14 Score=132.18 Aligned_cols=82 Identities=21% Similarity=0.111 Sum_probs=76.9
Q ss_pred CchHHhhhhhHHHHHHHHHHhhhhcCCc----ceEEeccCCCcHHHHHHHHHHhhchhhhhhhHHHHhhchHHHHHHHHH
Q psy14362 2 SDSRDDMMETEINNHAIVVTNDVAHNNK----DRQKIFGDQLKVSIMHAGGREFDRGQKIDKRYIFIAAEGEHKASRALR 77 (422)
Q Consensus 2 ~~~~~~l~~r~~i~~~i~~~~~~~~~~w----~~vei~di~~~~~~~~am~~~~~ae~~r~~~a~~~~a~~~~~~~~~~~ 77 (422)
-.||++|++|+.||..|.+.|+.+.+.| .|+||+||.||+.+++||..|.+| ||.|||.|..+|||++++++.+
T Consensus 114 ltLD~vFeer~~ln~sI~eainkA~~~wG~~clr~eIrDI~pp~~V~~AM~~q~~A--eR~krAailesEger~~~InrA 191 (301)
T KOG2620|consen 114 LTLDKVFEERNSLNKSIVEAINKAMEAWGYECLRYEIRDIEPPPSVKRAMNMQNEA--ERMKRAAILESEGERIAQINRA 191 (301)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCCHHHHHHHHHHHHH--HHHHHHHHhhhhhhhHHhhhhh
Confidence 3699999999999999999999999999 999999999999999999999999 7999999999999999999999
Q ss_pred HH---HHHhcc
Q psy14362 78 EA---SEVISD 85 (422)
Q Consensus 78 ~a---~~~~~~ 85 (422)
|+ ++++++
T Consensus 192 EGek~s~iL~s 202 (301)
T KOG2620|consen 192 EGEKESKILAS 202 (301)
T ss_pred cchhhhHHhhh
Confidence 88 445533
No 29
>PF13421 Band_7_1: SPFH domain-Band 7 family
Probab=99.41 E-value=1.7e-11 Score=114.80 Aligned_cols=158 Identities=16% Similarity=0.287 Sum_probs=125.5
Q ss_pred ceeEEecCCeEEEEEECCeeecCcccccceEEE-------------------ccccceEEEEEeeeEE-eecCC-Ccc--
Q psy14362 208 VCFKVVQEYERAVIFRLGRLVSGGAKGPGIFFI-------------------LPCMDSYVCVDLRTRT-YDVPP-QEV-- 264 (422)
Q Consensus 208 ~~~~~V~~ge~gVv~~fGk~~~~~v~~pGlh~~-------------------~P~i~~v~~v~~r~~~-~~~~~-~~~-- 264 (422)
.+-.+|++||.+|.++-|++.+ +.+||.|-. .||-..|+.|+++... ..+.. .++
T Consensus 14 GS~LiV~egQ~Avfv~~G~i~d--~~~pG~y~l~T~n~P~l~~l~~~~~Gg~spf~~eVyFvn~~~~~~~kwGT~~pi~~ 91 (211)
T PF13421_consen 14 GSQLIVREGQCAVFVNDGKIAD--VFGPGRYTLDTDNIPILSTLKNWKFGGESPFKAEVYFVNTKEITNIKWGTPNPIPY 91 (211)
T ss_pred CCEEEECCCCEEEEEECCEEEE--EecCceEEEecCCchHHHHHhhhccCCCCCceEEEEEEECeEecCCccCCCCCeee
Confidence 4567999999999999999994 899999932 3666678899987763 33332 222
Q ss_pred ccCC--CceEEEEEEEEEEecchHHHHHhh---------cChHHHHHHHHHHHHHHHhc--ccchhHHHhhHHHHHHHHH
Q psy14362 265 LTKD--SVTVSVDAVVYYRVSNATISVANV---------ANAHHSTKLLAQTTLRNVMG--TRPLHEILSEREAISNTMQ 331 (422)
Q Consensus 265 ~T~D--~~~V~V~~~V~yrI~d~~~~~~~~---------~~~~~~l~~~~~~alR~vv~--~~tld~ll~~R~~i~~~i~ 331 (422)
...+ .+.+...+++.|||.||..++.++ .+....++..+...+-++++ ++++.++-.+..+|++.++
T Consensus 92 ~D~~~~~v~lra~G~ys~rI~Dp~~F~~~~vg~~~~~~~~~i~~~l~~~i~~~i~~~l~~~~~~~~~i~a~~~eis~~~~ 171 (211)
T PF13421_consen 92 RDPEYGPVRLRAFGTYSFRIVDPVLFIRNLVGTQSEFTTEEINEQLRSEIVQAIADALAESKISILDIPAHLDEISEALK 171 (211)
T ss_pred cCCCCCcEEEEEEEEEEEEEeCHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 2222 246777788899999999987654 34455677777777777776 4688899999999999999
Q ss_pred HHHHHHhhcCCeEEEEEEeeccCCcHHHHHHHHHHH
Q psy14362 332 LALDEATEDWGIKVERVEIKDVRLPVQLQRAMAAEA 367 (422)
Q Consensus 332 ~~L~~~l~~~GI~V~~V~I~~i~~P~~v~~Ai~~~~ 367 (422)
+.++..++.||++|.++.|.++.+|++++++++++.
T Consensus 172 ~~l~~~~~~~Gi~l~~f~I~~i~~pee~~~~i~~~~ 207 (211)
T PF13421_consen 172 EKLNPEFERYGIELVDFGIESISFPEEVQKAIDKRA 207 (211)
T ss_pred HHHHHHHHhcCcEEEEEEEEeecCCHHHHHHHHHHH
Confidence 999999999999999999999999999999998754
No 30
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.26 E-value=2.1e-11 Score=118.15 Aligned_cols=112 Identities=11% Similarity=0.007 Sum_probs=84.8
Q ss_pred CchHHhhhhhHHHHHHHHHHhhhhcCCc----ceEEeccCCCcHHHHHHHHHHhhchhhhhhhHH-----------HHhh
Q psy14362 2 SDSRDDMMETEINNHAIVVTNDVAHNNK----DRQKIFGDQLKVSIMHAGGREFDRGQKIDKRYI-----------FIAA 66 (422)
Q Consensus 2 ~~~~~~l~~r~~i~~~i~~~~~~~~~~w----~~vei~di~~~~~~~~am~~~~~ae~~r~~~a~-----------~~~a 66 (422)
.+||++|++|+.|+..|++.+++..++| .+|+|+||.||+++++||..++.| +|+++|. +..|
T Consensus 100 ~~l~eil~~R~~I~~~i~~~l~~~l~~~GI~V~~v~I~~i~~p~~v~~A~~~~~~A--~~~~~a~~~~Aea~~~~~i~~A 177 (262)
T cd03407 100 LTLDELFEQKDEIAKAVEEELREAMSRYGFEIVATLITDIDPDAEVKRAMNEINAA--QRQRVAAVHKAEAEKIKDIKAA 177 (262)
T ss_pred ccHHHHHhhHHHHHHHHHHHHHHHHHhcCcEEEEEEEEecCCCHHHHHHHHHHHHH--HHHHHHHHHHhhHHHHHHHHHH
Confidence 4799999999999999999999999999 999999999999999999999999 6777644 4444
Q ss_pred chHHHHHHHHHHH-------------H------HHh--ccChhHh----hhhhhhccCCCCccccccccccCCceEEEee
Q psy14362 67 EGEHKASRALREA-------------S------EVI--SDSPAAL----QLRYLQIPGVPKGTFQPYLGRINKVPIFIGL 121 (422)
Q Consensus 67 ~~~~~~~~~~~~a-------------~------~~~--~~~~~a~----~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (422)
+||.++.+..+|| . +.| .+.|.++ .-+||+++ +.++++.| +++|+|.
T Consensus 178 ~~ea~a~~~~Aeg~a~a~~~~A~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~e~~-------~~~~~~~~-kviv~p~ 249 (262)
T cd03407 178 EADAEAKRLQGVGAAEQRQAIADGLRESILSLADAVPGMTAKDVMDLLLVNQYFDTL-------KAYGRSSS-TVVFRPH 249 (262)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHH-------HHHHhCCC-CEEEecC
Confidence 4554444443332 0 011 1223333 35799999 88888888 7788885
Q ss_pred cc
Q psy14362 122 LA 123 (422)
Q Consensus 122 ~~ 123 (422)
..
T Consensus 250 ~~ 251 (262)
T cd03407 250 GP 251 (262)
T ss_pred CC
Confidence 44
No 31
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=4e-11 Score=117.81 Aligned_cols=111 Identities=23% Similarity=0.158 Sum_probs=89.5
Q ss_pred CchHHhhhhhH-HHHHHHHHHhhhhcCCc----ceEEeccCCCcHHHHHHHHHHhhchhhhhhhHHHHhhch--------
Q psy14362 2 SDSRDDMMETE-INNHAIVVTNDVAHNNK----DRQKIFGDQLKVSIMHAGGREFDRGQKIDKRYIFIAAEG-------- 68 (422)
Q Consensus 2 ~~~~~~l~~r~-~i~~~i~~~~~~~~~~w----~~vei~di~~~~~~~~am~~~~~ae~~r~~~a~~~~a~~-------- 68 (422)
.++|+++++|+ .||..|++.+++.+++| .+|+|+|+.||+++++||.+|+.| ||++|+++..|||
T Consensus 129 ~~~~e~~~~~~~~i~~~i~~~l~~~~~~~Gi~V~~V~i~~i~~p~ev~~a~~~~~~A--er~~ra~i~~Ae~~~~~~~~~ 206 (291)
T COG0330 129 MTLDELLTERRAEINAKIREILDEAADPWGIKVVDVEIKDIDPPEEVQAAMEKQMAA--ERDKRAEILEAEGEAQAAILR 206 (291)
T ss_pred ccHHHHhhCchHHHHHHHHHHHHHhhhhcCcEEEEEEEeecCCCHHHHHHHHHHHHH--HHHHHHHHHHhHhHHhhhhhh
Confidence 47999999999 99999999999999999 999999999999999999999999 7999999998887
Q ss_pred ---HHHHHHHHHHHH--------------HHhccC-------hhHhhhhhhhccCCCCccccccccccCCceEEEee
Q psy14362 69 ---EHKASRALREAS--------------EVISDS-------PAALQLRYLQIPGVPKGTFQPYLGRINKVPIFIGL 121 (422)
Q Consensus 69 ---~~~~~~~~~~a~--------------~~~~~~-------~~a~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (422)
+.++++.++||. +++.+. +....+||++.+ -......+.+.+++|.
T Consensus 207 a~g~~~a~~i~aea~~~a~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-------~~~~~~~~~~~v~~p~ 276 (291)
T COG0330 207 AEGEAEAAIILAEAEAEAEVIARAEADAAKIIAAALREAPAAPQALAQRYLEEL-------LEIALAGNSKVVVVPN 276 (291)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhhccHHHHHHHhhcccccchhHHHHHHHHHHH-------HHHhhCCCCeEEEecC
Confidence 777777777776 333322 334788999888 3333333555555553
No 32
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=99.03 E-value=1.2e-09 Score=108.96 Aligned_cols=73 Identities=10% Similarity=-0.041 Sum_probs=62.9
Q ss_pred CchHHhhh-hhHHHHHHHHHHhhhh---------------------------------------cCCc----ceEEeccC
Q psy14362 2 SDSRDDMM-ETEINNHAIVVTNDVA---------------------------------------HNNK----DRQKIFGD 37 (422)
Q Consensus 2 ~~~~~~l~-~r~~i~~~i~~~~~~~---------------------------------------~~~w----~~vei~di 37 (422)
.+||++++ +|++|+..+++.+++. +.+| .+|+|+||
T Consensus 134 ~tldei~~~~R~~i~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GI~V~~V~i~~i 213 (334)
T PRK11029 134 LDVKDIVTDSRGRLTLDVRDALNSGSAGTEDEVATPAADDAIASAAERVEAETKGKVPVINPNSMAALGIEVVDVRIKQI 213 (334)
T ss_pred cCHHHHHHhhHHHHHHHHHHHHHHhhhcccccccccccccccccchhhcccccccccccccccccccCCcEEEEEEEEec
Confidence 57999997 6999999999999964 3689 99999999
Q ss_pred CCcHHHHHHHHHHhhchhhhhhhHHHHhhchHHHHHHHH
Q psy14362 38 QLKVSIMHAGGREFDRGQKIDKRYIFIAAEGEHKASRAL 76 (422)
Q Consensus 38 ~~~~~~~~am~~~~~ae~~r~~~a~~~~a~~~~~~~~~~ 76 (422)
.||+++++||..+|+| ||+++|..+.||||.+|.+..
T Consensus 214 ~~P~~v~~ai~~~~~A--ere~~a~~~~aege~~a~~~~ 250 (334)
T PRK11029 214 NLPTEVSDAIYNRMRA--EREAVARRHRSQGQEEAEKLR 250 (334)
T ss_pred CCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 788888777777776665433
No 33
>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism]
Probab=98.90 E-value=5.1e-08 Score=92.47 Aligned_cols=160 Identities=14% Similarity=0.184 Sum_probs=123.3
Q ss_pred ceeEEecCCeEEEEEECCeeecCcccccceE-------------------EEccccceEEEEEeeeEE-eecC-CCcccc
Q psy14362 208 VCFKVVQEYERAVIFRLGRLVSGGAKGPGIF-------------------FILPCMDSYVCVDLRTRT-YDVP-PQEVLT 266 (422)
Q Consensus 208 ~~~~~V~~ge~gVv~~fGk~~~~~v~~pGlh-------------------~~~P~i~~v~~v~~r~~~-~~~~-~~~~~T 266 (422)
.+..+|.|++-++...-|++.+ -.-++|.+ |..|+-+.|+.|+++.+. +.+. ++++.-
T Consensus 39 Gs~l~Vrp~qmamfvn~G~I~d-vf~e~G~y~v~~~t~P~L~tlk~~kfgf~sp~k~eVyfvntqe~~girwGT~qpin~ 117 (345)
T COG4260 39 GSILHVRPNQMAMFVNGGQIAD-VFAEAGYYKVTTQTLPSLFTLKRFKFGFESPFKQEVYFVNTQEIKGIRWGTPQPINY 117 (345)
T ss_pred CcEEEEecCceEEEEcCCEEEe-eecCCceeEeeecccchhhhhhcceecCCCcccceEEEEecceecceecCCCCCeec
Confidence 3567899999999999999885 23337754 234667788999998876 5443 233333
Q ss_pred CC-----CceEEEEEEEEEEecchHHHHHh---------hcChHHHHHHHHHHHHHHHhcccc--hhHHHhhHHHHHHHH
Q psy14362 267 KD-----SVTVSVDAVVYYRVSNATISVAN---------VANAHHSTKLLAQTTLRNVMGTRP--LHEILSEREAISNTM 330 (422)
Q Consensus 267 ~D-----~~~V~V~~~V~yrI~d~~~~~~~---------~~~~~~~l~~~~~~alR~vv~~~t--ld~ll~~R~~i~~~i 330 (422)
.| +.++...++..|+|+||..++-. ++|.++.+-..+..+|...+.++- +.++-.+--+|++.+
T Consensus 118 ~dn~~~g~l~lRa~Gtys~kvtDpi~fi~~I~g~~dvy~v~di~~q~ls~~m~al~tai~q~G~~~~~ltan~~elsk~m 197 (345)
T COG4260 118 FDNFYNGELFLRAHGTYSIKVTDPILFIQQIPGNRDVYTVDDINQQYLSEFMGALATAINQSGVRFSFLTANQMELSKYM 197 (345)
T ss_pred ccccccceeEEeecceEEEEecCHHHHHHhccCCCceEEHHHHHHHHHHHHHHHHHHHHHhcCceehhhhhhHHHHHHHH
Confidence 34 47788889999999999997643 345556666677788888887763 445556889999999
Q ss_pred HHHHHHHhhcCCeEEEEEEeeccCCcHHHHHHHHHHHH
Q psy14362 331 QLALDEATEDWGIKVERVEIKDVRLPVQLQRAMAAEAE 368 (422)
Q Consensus 331 ~~~L~~~l~~~GI~V~~V~I~~i~~P~~v~~Ai~~~~~ 368 (422)
.+.|...+..||..|++|+|-+|++|++.++.++.+..
T Consensus 198 ~e~Ld~q~~q~Gm~v~sfqvaSisypde~Q~lin~r~s 235 (345)
T COG4260 198 AEVLDEQWTQYGMAVDSFQVASISYPDESQALINMRNS 235 (345)
T ss_pred HHHHhHHHHhhCceEeeEEEEEecCcHHHHHHHHhhcc
Confidence 99999999999999999999999999999999976544
No 34
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=98.88 E-value=7.6e-09 Score=98.88 Aligned_cols=68 Identities=12% Similarity=-0.040 Sum_probs=58.0
Q ss_pred CchHHhhhh-hHHHHHHHHHHhhhhcCCc----ceEEeccCCCcHHHHHHHHHHhhchhhhhhhHHHHhhchHHH
Q psy14362 2 SDSRDDMME-TEINNHAIVVTNDVAHNNK----DRQKIFGDQLKVSIMHAGGREFDRGQKIDKRYIFIAAEGEHK 71 (422)
Q Consensus 2 ~~~~~~l~~-r~~i~~~i~~~~~~~~~~w----~~vei~di~~~~~~~~am~~~~~ae~~r~~~a~~~~a~~~~~ 71 (422)
.++|+++++ |++|+..|.+.+++..++| .+|.|+||.+|+++++||...++| +|+++|..+.||||.+
T Consensus 108 ~~~~el~~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~i~~ai~~~~~a--e~~~~a~~~~ae~~~~ 180 (242)
T cd03405 108 RTLIELVSGERGELMEEIRRAVAEEAKELGIEVVDVRIKRIDLPEEVSESVYRRMRA--ERERIAAEFRAEGEEE 180 (242)
T ss_pred CCHHHHHHhHHHHHHHHHHHHHHHHHHccCcEEEEEEEEeccCCHHHHHHHHHHHHH--HHHHHHHHHHhhhHHH
Confidence 468999988 9999999999999999999 999999999999999999999999 5666655544444333
No 35
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=98.86 E-value=1.1e-08 Score=99.16 Aligned_cols=95 Identities=11% Similarity=-0.023 Sum_probs=72.3
Q ss_pred CchHHhhh-hhHHHHHHHHHHhhhhcCCc------ceEEeccCCCcHHHHHHHHHHhhchhhhhhhHH------------
Q psy14362 2 SDSRDDMM-ETEINNHAIVVTNDVAHNNK------DRQKIFGDQLKVSIMHAGGREFDRGQKIDKRYI------------ 62 (422)
Q Consensus 2 ~~~~~~l~-~r~~i~~~i~~~~~~~~~~w------~~vei~di~~~~~~~~am~~~~~ae~~r~~~a~------------ 62 (422)
.++|++++ +|++|++.|.+.+++..++| ++|.|+||.||+++++||++.+.|+ +++++.
T Consensus 103 ~~l~eil~~~R~~i~~~i~~~l~~~~~~~~~GI~V~~v~I~~i~~p~~v~~a~~~~~~a~--q~~~~~~~~ae~~~~~~~ 180 (261)
T TIGR01933 103 STMDDILTEGRSQIREDTKERLNEIIDNYDLGITVTDVNFQSARPPEEVKEAFDDVIIAR--EDEERYINEAEAYANEVV 180 (261)
T ss_pred CcHHHHHHhCHHHHHHHHHHHHHHHHhhhcCCcEEEEEEEEecCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 47899998 89999999999999999977 9999999999999999999999994 443332
Q ss_pred ----------HHhhchHHHHHHHHHHH--------HHHhccChhH-hhhhhhhcc
Q psy14362 63 ----------FIAAEGEHKASRALREA--------SEVISDSPAA-LQLRYLQIP 98 (422)
Q Consensus 63 ----------~~~a~~~~~~~~~~~~a--------~~~~~~~~~a-~~lr~l~~~ 98 (422)
++.|||+.++.+..++| +..|..+|.. -.++||+++
T Consensus 181 ~~a~~~a~~~~~~Aea~~~~~~~~a~g~a~~~~~~~~ay~~~p~~~~~~~~le~~ 235 (261)
T TIGR01933 181 PKARGDAQRIIEEARGYKERRINRAKGDVARFTKLLAEYKKAPDVTRERLYLETM 235 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 34444444444333322 2236677776 567789988
No 36
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=98.74 E-value=4.4e-08 Score=97.58 Aligned_cols=83 Identities=14% Similarity=0.107 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHhhhhcCCc----ceEEeccCCCcHHHHHHHHHHhhchhhhhhhHHH-----------------------
Q psy14362 11 TEINNHAIVVTNDVAHNNK----DRQKIFGDQLKVSIMHAGGREFDRGQKIDKRYIF----------------------- 63 (422)
Q Consensus 11 r~~i~~~i~~~~~~~~~~w----~~vei~di~~~~~~~~am~~~~~ae~~r~~~a~~----------------------- 63 (422)
|+.|...|.+.+.+...+| .+|.|+||.||+++++||...++| ||+++|..
T Consensus 173 r~~l~~~i~~~~~~~~~~~Gi~V~~V~I~~i~~p~~v~~Ai~~~~~a--ere~~a~~~r~ege~~a~~i~a~A~~e~~~~ 250 (317)
T TIGR01932 173 REILAREISQIANSQLKDIGIEVVDVRIKKINYSDELSESIYNRMRS--EREQIARMHRSQGEEKAEEILGKAEYEVRKI 250 (317)
T ss_pred hhhHHHHHHHHHHHHHhcCCcEEEEEEEEecCCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445678888999999999 999999999999999999999999 45543332
Q ss_pred ----------HhhchHHHHHHHHHHHHHHhccChhHh-hhhhhhcc
Q psy14362 64 ----------IAAEGEHKASRALREASEVISDSPAAL-QLRYLQIP 98 (422)
Q Consensus 64 ----------~~a~~~~~~~~~~~~a~~~~~~~~~a~-~lr~l~~~ 98 (422)
+.|+||.++.+.+ ++.|..+|.-+ ..|||+++
T Consensus 251 ~aeA~a~a~~~~Aegea~a~~~~---~~a~~~~p~~~~~~~~le~~ 293 (317)
T TIGR01932 251 LSEAYRTARIIKGEGDAEAAKIY---SDAYGKDPEFYSFWRSLEAY 293 (317)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH---HHHHccCHHHHHHHHHHHHH
Confidence 2333333322222 23477888775 48999999
No 37
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=98.60 E-value=1.2e-07 Score=92.60 Aligned_cols=79 Identities=9% Similarity=0.018 Sum_probs=73.1
Q ss_pred CchHHhhh-hhHHHHHHHHHHhhhhcCCc------ceEEeccCCCcHHHHHHHHHHhhchhhhhhh--------HHHHhh
Q psy14362 2 SDSRDDMM-ETEINNHAIVVTNDVAHNNK------DRQKIFGDQLKVSIMHAGGREFDRGQKIDKR--------YIFIAA 66 (422)
Q Consensus 2 ~~~~~~l~-~r~~i~~~i~~~~~~~~~~w------~~vei~di~~~~~~~~am~~~~~ae~~r~~~--------a~~~~a 66 (422)
.+||++++ .|++|+..+++.+++..++| .+|.|+||.||+++++|| .+|.| ||+++ |.+..|
T Consensus 113 ~tldeVis~~Rd~I~~~I~~~l~e~l~~y~~GI~I~dV~I~~id~P~~V~~af-erM~a--ER~k~~~~~~~~~~~~~~a 189 (280)
T cd03406 113 HTLQEVYIDLFDQIDENLKLALQKDLTRMAPGLEIQAVRVTKPKIPEAIRRNY-ELMEA--EKTKLLIAIQKQKVVEKEA 189 (280)
T ss_pred CCHHHHHhccHHHHHHHHHHHHHHHHhccCCCcEEEEEEEEecCCCHHHHHHH-HHHHH--HHHhhhhccchhHHHHHHh
Confidence 47999998 89999999999999999988 999999999999999999 79999 79999 999999
Q ss_pred chHHHHHHHHHHHHHHh
Q psy14362 67 EGEHKASRALREASEVI 83 (422)
Q Consensus 67 ~~~~~~~~~~~~a~~~~ 83 (422)
|||+.++..-+||..-.
T Consensus 190 e~~~~~~~~~a~~~~~~ 206 (280)
T cd03406 190 ETERKKAVIEAEKVAQV 206 (280)
T ss_pred hHHHHHHHHHHHHHhhH
Confidence 99999999888886433
No 38
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=98.56 E-value=2.7e-07 Score=89.54 Aligned_cols=64 Identities=13% Similarity=-0.023 Sum_probs=54.1
Q ss_pred CchHHhhhh-hHHHHHHHHHHhhhhcCCc------ceEEeccCCCcHHHHHHHHHHhhchhhhhhhHHHHhhc
Q psy14362 2 SDSRDDMME-TEINNHAIVVTNDVAHNNK------DRQKIFGDQLKVSIMHAGGREFDRGQKIDKRYIFIAAE 67 (422)
Q Consensus 2 ~~~~~~l~~-r~~i~~~i~~~~~~~~~~w------~~vei~di~~~~~~~~am~~~~~ae~~r~~~a~~~~a~ 67 (422)
..+++++++ |++|+..|++.+.+..++| ++|.|+||.||+++++||++...|+ +++++.+..|+
T Consensus 130 ~~~~eil~~~R~~i~~~i~~~l~~~~~~~~~Gi~v~~v~i~~i~~p~~i~~a~~~~~~A~--q~~~~~~~eae 200 (266)
T cd03404 130 STLDDVLTEGREEIAQDVRELLQAILDAYKAGIEIVGVNLQDADPPEEVQDAFDDVNKAR--QDRERLINEAE 200 (266)
T ss_pred CcHHHHHHhCHHHHHHHHHHHHHHHhhccCCCeEEEEEEEEeCCCCHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 478999998 9999999999999998877 9999999999999999999998884 44444443333
No 39
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=98.46 E-value=4.8e-07 Score=83.62 Aligned_cols=78 Identities=14% Similarity=0.005 Sum_probs=62.5
Q ss_pred CchHHhhhhhHHHHHHHHHHhhhhcCCc----ceEEeccCCCcHHHHHHHHHHhhchhhhhhhH--HHHhhchHHHHHHH
Q psy14362 2 SDSRDDMMETEINNHAIVVTNDVAHNNK----DRQKIFGDQLKVSIMHAGGREFDRGQKIDKRY--IFIAAEGEHKASRA 75 (422)
Q Consensus 2 ~~~~~~l~~r~~i~~~i~~~~~~~~~~w----~~vei~di~~~~~~~~am~~~~~ae~~r~~~a--~~~~a~~~~~~~~~ 75 (422)
..++|++++|++|+..|++.+.+..++| ++|.|+||.+|+++++||++...|+ ++..+| .+..|++|.++...
T Consensus 109 ~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai~~k~~a~-q~~~~a~~~~~~a~~ea~~~~~ 187 (196)
T cd03401 109 FTAEELITQREEVSALIREALTERAKDFGIILDDVSITHLTFSKEFTKAVEAKQVAQ-QEAERAKFVVEKAEQEKQAAVI 187 (196)
T ss_pred CCHHHHHhhHHHHHHHHHHHHHHHHHhCCeEEEEEEEEeccCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999 9999999999999999999755554 333333 35666666666666
Q ss_pred HHHHH
Q psy14362 76 LREAS 80 (422)
Q Consensus 76 ~~~a~ 80 (422)
.++|.
T Consensus 188 ~A~ge 192 (196)
T cd03401 188 RAEGE 192 (196)
T ss_pred Hhhhh
Confidence 65553
No 40
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=98.32 E-value=1.5e-06 Score=89.34 Aligned_cols=60 Identities=3% Similarity=-0.113 Sum_probs=52.8
Q ss_pred CchHHhhhh-hHHHHHHHHHHhhhhcCCc------ceEEeccCCCcHHHHHHHHHHhhchhhhhhhHHH
Q psy14362 2 SDSRDDMME-TEINNHAIVVTNDVAHNNK------DRQKIFGDQLKVSIMHAGGREFDRGQKIDKRYIF 63 (422)
Q Consensus 2 ~~~~~~l~~-r~~i~~~i~~~~~~~~~~w------~~vei~di~~~~~~~~am~~~~~ae~~r~~~a~~ 63 (422)
..||++|++ |++|+.++++.+++..++| .+|+|+||.||+++++||.++..| ++++++.+
T Consensus 199 ~tldevLt~~R~~I~~~i~~~l~e~l~~y~~GI~V~~V~I~di~pP~eV~~Af~~v~~A--re~~~~~i 265 (419)
T PRK10930 199 YTMDRILTEGRTVIRSDTQRELEETIRPYDMGITLLDVNFQAARPPEEVKAAFDDAIAA--RENEQQYI 265 (419)
T ss_pred CCHHHHhhccHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEeecCCCHHHHHHHHHHHHH--HHHHHHHH
Confidence 579999985 9999999999999999998 899999999999999999999999 44444333
No 41
>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=98.12 E-value=4.6e-06 Score=78.77 Aligned_cols=70 Identities=9% Similarity=-0.131 Sum_probs=60.7
Q ss_pred CchHHhhh-------hhHHHHHHHHHHhhhhcCCc----ceEEeccCCCcHHHHHHHHHHhhchhhhhhhHHHHhhchHH
Q psy14362 2 SDSRDDMM-------ETEINNHAIVVTNDVAHNNK----DRQKIFGDQLKVSIMHAGGREFDRGQKIDKRYIFIAAEGEH 70 (422)
Q Consensus 2 ~~~~~~l~-------~r~~i~~~i~~~~~~~~~~w----~~vei~di~~~~~~~~am~~~~~ae~~r~~~a~~~~a~~~~ 70 (422)
..+|++++ +|++|+++|++.+++.+++| .+|+|+|+.+|+++++||.+.++| ||++.|+-..++|++
T Consensus 104 ~~~d~il~~~~~l~~~r~~I~~~l~~~l~~~l~~~GI~V~~v~I~~l~~p~ei~~am~~R~~A--e~~~~Ar~~~~~Ga~ 181 (219)
T cd03402 104 YPYDDPVNKETSLRGNSDEVSDELARELQERLAVAGVEVVEARITHLAYAPEIAQAMLQRQQA--SAIIAARRKIVEGAV 181 (219)
T ss_pred CcHHHHhccccccccCHHHHHHHHHHHHHHHHHhhCcEEEEEEEEeecCCHHHHHHHHHHHHH--HHHHHHHHHHhcccc
Confidence 45788875 67999999999999999999 999999999999999999999999 688888777777765
Q ss_pred HHH
Q psy14362 71 KAS 73 (422)
Q Consensus 71 ~~~ 73 (422)
.-.
T Consensus 182 ~~~ 184 (219)
T cd03402 182 GMV 184 (219)
T ss_pred hHH
Confidence 443
No 42
>PTZ00491 major vault protein; Provisional
Probab=97.96 E-value=0.00048 Score=75.16 Aligned_cols=147 Identities=13% Similarity=0.168 Sum_probs=103.4
Q ss_pred eEEecCCeEEEEEECCe-eecCcccccceEEEccccceEEEEEeee------EE-----eecCC------CccccCCCce
Q psy14362 210 FKVVQEYERAVIFRLGR-LVSGGAKGPGIFFILPCMDSYVCVDLRT------RT-----YDVPP------QEVLTKDSVT 271 (422)
Q Consensus 210 ~~~V~~ge~gVv~~fGk-~~~~~v~~pGlh~~~P~i~~v~~v~~r~------~~-----~~~~~------~~~~T~D~~~ 271 (422)
.|.||-+...=|+-+-. ..+ -+.||-+.+.-|- +.+..+++.. .. +.+.+ ..+-|+|...
T Consensus 464 ~~~vphn~avqvydyk~~~~R-vv~GP~~v~L~pd-E~ftvlsLSgg~PK~~n~i~~l~l~lGPdf~tD~i~vET~DhAr 541 (850)
T PTZ00491 464 TYKVPHNAAVQLYDYKTKKSR-VVFGPDLVMLEPD-EEFTVLSLSGGKPKVPNQIHSLHLFLGPDFMTDVIHVETSDHAR 541 (850)
T ss_pred EEEcCCCcEEEEEEcccCceE-EEECCceEEecCC-CceEEEEecCCCCCCcchhhhhhhhhCCccceeEEEEEEcccce
Confidence 57888777766664422 222 5799999988885 5666665521 11 11111 1266999999
Q ss_pred EEEEEEEEEEec----chH--HHHHhhcChHHHHHHHHHHHHHHHhcccchhHHHhhHHH-HHHHHHHHHHH--------
Q psy14362 272 VSVDAVVYYRVS----NAT--ISVANVANAHHSTKLLAQTTLRNVMGTRPLHEILSEREA-ISNTMQLALDE-------- 336 (422)
Q Consensus 272 V~V~~~V~yrI~----d~~--~~~~~~~~~~~~l~~~~~~alR~vv~~~tld~ll~~R~~-i~~~i~~~L~~-------- 336 (422)
+.++.+..|+.. ||. ..+|.+.|+-...-..+-+.+|..+++.+.|++..+-.. |.+.+.-..+.
T Consensus 542 L~l~LsYnW~F~v~~~d~~~~~k~Fsv~DFvGd~Ck~iaSrIR~aVA~~~Fd~FHknsa~iiR~aVFg~~~e~~~~r~~l 621 (850)
T PTZ00491 542 LALQLSYNWYFDVTDGNPEDAQKCFSVPDFVGDACKTIASRVRAAVASEPFDEFHKNSAKIIRQAVFGSNDETGEVRDSL 621 (850)
T ss_pred EEEEEEEEEEEecCCCChhhHhheeccCchHHHHHHHHHHHHHHHHhcCCHHHHhccHHHHHHHHhccCcCCCCccccce
Confidence 999999999986 565 468999999999999999999999999999999985332 33333331111
Q ss_pred HhhcCCeEEEEEEeeccCCcHH
Q psy14362 337 ATEDWGIKVERVEIKDVRLPVQ 358 (422)
Q Consensus 337 ~l~~~GI~V~~V~I~~i~~P~~ 358 (422)
.+...|+.|++|.|+++.|-++
T Consensus 622 ~F~~N~lvit~VDvqsvEpvD~ 643 (850)
T PTZ00491 622 RFPANNLVITNVDVQSVEPVDE 643 (850)
T ss_pred EEccCCeEEEEEeeeeeeecCH
Confidence 2235699999999999998543
No 43
>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=97.27 E-value=0.00046 Score=58.99 Aligned_cols=48 Identities=10% Similarity=-0.112 Sum_probs=44.8
Q ss_pred CchHHhhh-hhHHHHHHHHHHhhhhcCCc----ceEEeccCCCcHHHHHHHHH
Q psy14362 2 SDSRDDMM-ETEINNHAIVVTNDVAHNNK----DRQKIFGDQLKVSIMHAGGR 49 (422)
Q Consensus 2 ~~~~~~l~-~r~~i~~~i~~~~~~~~~~w----~~vei~di~~~~~~~~am~~ 49 (422)
.+++++++ +|++|++.+++.+.+..++| .+|.|+||.+|+++++|++.
T Consensus 70 ~~~~e~i~~~R~~i~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~P~~v~~aI~~ 122 (124)
T cd03400 70 YTAEQIYSTKRKEIESAIKKELIEEFVGDGLILEEVLLRNIKLPDQIADAIEA 122 (124)
T ss_pred CCHHHHhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEEecccCCHHHHHHHHh
Confidence 46899996 79999999999999999999 99999999999999999874
No 44
>PF01145 Band_7: SPFH domain / Band 7 family; InterPro: IPR001107 Band 7 protein is an integral membrane protein which is thought to regulate cation conductance. A variety of proteins belong to this family. These include the prohibitins, cytoplasmic anti-proliferative proteins and stomatin, an erythrocyte membrane protein. Bacterial HflC protein also belongs to this family. Note: Band 4.1 (IPR021187 from INTERPRO) and Band 7 proteins refer to human erythrocyte membrane proteins separated by SDS polyacrylamide gels and stained with coomassie blue [].; PDB: 2RPB_A 3BK6_B 1WIN_A.
Probab=97.23 E-value=0.00044 Score=62.18 Aligned_cols=66 Identities=11% Similarity=-0.069 Sum_probs=58.4
Q ss_pred CchHHhhhhhHHHHHHHHHHhhhhcCCc----ceEEeccCCCcHHHHHHHHHHhhchhhhhh-hHHHHhhchH
Q psy14362 2 SDSRDDMMETEINNHAIVVTNDVAHNNK----DRQKIFGDQLKVSIMHAGGREFDRGQKIDK-RYIFIAAEGE 69 (422)
Q Consensus 2 ~~~~~~l~~r~~i~~~i~~~~~~~~~~w----~~vei~di~~~~~~~~am~~~~~ae~~r~~-~a~~~~a~~~ 69 (422)
..++++++.|+++...+++.+.+..++| .+|.|.|+.+|++++++|.....| +.++ ++++..||+|
T Consensus 108 ~~~~~~~~~r~~~~~~v~~~l~~~~~~~Gi~i~~v~i~~~~~~~~~~~~i~~~~~a--~~~~~~~~~~~a~~e 178 (179)
T PF01145_consen 108 YSLEEIYSNREEIADEVREQLQEALEEYGIEITSVQITDIDPPQEVEEAIEEKQRA--EQEAQQAEIERAEAE 178 (179)
T ss_dssp S-HHHHHHTHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEECTTHHHHHHHHHHH--HHHH-HHHHHHHHHH
T ss_pred eehHHhhhhhhhhhHhHHHHHhhhccccEEEEEEEEEeecCCCHHHHHHHHHHHHH--HHHHHHHHHHHHhhC
Confidence 3578999999999999999999999999 999999999999999999999999 5666 6776666665
No 45
>KOG3090|consensus
Probab=96.94 E-value=0.0016 Score=60.37 Aligned_cols=91 Identities=18% Similarity=0.175 Sum_probs=79.4
Q ss_pred chHHhhhhhHHHHHHHHHHhhhhcCCc----ceEEeccCCCcHHHHHHHHHHh--------------hchhhhhhhHHHH
Q psy14362 3 DSRDDMMETEINNHAIVVTNDVAHNNK----DRQKIFGDQLKVSIMHAGGREF--------------DRGQKIDKRYIFI 64 (422)
Q Consensus 3 ~~~~~l~~r~~i~~~i~~~~~~~~~~w----~~vei~di~~~~~~~~am~~~~--------------~ae~~r~~~a~~~ 64 (422)
.-.+++++|++....|++++-+...++ ..|-|....+.++--.|.+..- +| |.+||.+|+
T Consensus 146 NASqLITQRe~VSrliRk~L~eRA~~Fni~LDDVSiT~l~F~~efTaAiEaKQvA~QeAqRA~F~VekA--~qek~~~iv 223 (290)
T KOG3090|consen 146 NASQLITQREQVSRLIRKILTERAADFNIALDDVSITELTFGKEFTAAIEAKQVAAQEAQRAKFIVEKA--EQEKQSAIV 223 (290)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccceEeecceeeeeecCHHHHHHHHHHHHHHHHHhhhhhhhHHH--HHhhhhhhh
Confidence 446899999999999999999999998 9999999999999888765321 23 458899999
Q ss_pred hhchHHHHHHHHHHHHHHhccChhHhhhhhhhcc
Q psy14362 65 AAEGEHKASRALREASEVISDSPAALQLRYLQIP 98 (422)
Q Consensus 65 ~a~~~~~~~~~~~~a~~~~~~~~~a~~lr~l~~~ 98 (422)
.||||-++|+++-||.. +||+=+.||-+++-
T Consensus 224 rAqGEaksAqliGeAi~---nn~~fi~Lrki~aA 254 (290)
T KOG3090|consen 224 RAQGEAKSAQLIGEAIK---NNPAFITLRKIEAA 254 (290)
T ss_pred hhccchHHHHHHHHHHh---CCccceeehhHHHH
Confidence 99999999999999865 99988999999887
No 46
>KOG3083|consensus
Probab=96.71 E-value=0.0013 Score=61.06 Aligned_cols=94 Identities=17% Similarity=0.160 Sum_probs=77.1
Q ss_pred CCchHHhhhhhHHHHHHHHHHhhhhcCCc----ceEEeccCCCcHHHHHHHHHH--------------hhchhhhhhhHH
Q psy14362 1 MSDSRDDMMETEINNHAIVVTNDVAHNNK----DRQKIFGDQLKVSIMHAGGRE--------------FDRGQKIDKRYI 62 (422)
Q Consensus 1 ~~~~~~~l~~r~~i~~~i~~~~~~~~~~w----~~vei~di~~~~~~~~am~~~--------------~~ae~~r~~~a~ 62 (422)
++|-++++++||.+.+.+...+-+..... +.|.|.....-++--+|+++. .+| |.+|+|.
T Consensus 133 ~FdA~eliTqRe~vS~~v~~~lt~rA~~Fgl~LddvsiThltfGkEFt~AvE~KQVAQQEAErarFvVeKA--eQqk~aa 210 (271)
T KOG3083|consen 133 RFDAGELITQRELVSRQVSNDLTERAATFGLILDDVSITHLTFGKEFTEAVEAKQVAQQEAERARFVVEKA--EQQKKAA 210 (271)
T ss_pred hccccchhhhhHHHHHHHHHHHHHHHHhhCeeechhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhhhh
Confidence 36788999999999999999999998888 889999999999988887642 234 4578899
Q ss_pred HHhhchHHHHHHHHHHHHHHhccChhHhhhhhhhcc
Q psy14362 63 FIAAEGEHKASRALREASEVISDSPAALQLRYLQIP 98 (422)
Q Consensus 63 ~~~a~~~~~~~~~~~~a~~~~~~~~~a~~lr~l~~~ 98 (422)
||.||||-+||+..+.+-..-.+ .-|.||.++.-
T Consensus 211 vIsAEGds~aA~li~~sla~aG~--gLielrrlEAa 244 (271)
T KOG3083|consen 211 VISAEGDSKAAELIANSLATAGD--GLIELRRLEAA 244 (271)
T ss_pred eeecccchHHHHHHHHHHhhcCC--ceeeehhhhhH
Confidence 99999999999999888654322 34888888876
No 47
>PF12221 HflK_N: Bacterial membrane protein N terminal; InterPro: IPR020980 HflK is a bacterial membrane protein which is thought, together with the HflC protein, to form a membrane protease complex whose activity is modulated by the GTPase HflX []. This entry represents the N-terminal, membrane-spanning, region of of HflK responsible for anchoring the protein in the bacterial membrane. It is often found in association with PF01145 from PFAM.
Probab=96.51 E-value=0.0015 Score=45.00 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=21.7
Q ss_pred cCCCchhhccHHHHHHHHhhhccc
Q psy14362 149 TLPFSLFVCFKPYLNRINKVFSSL 172 (422)
Q Consensus 149 ~~P~dL~~~~r~~~~~L~~~fg~~ 172 (422)
..||||+++|+.++++|+++||++
T Consensus 18 ~gPPDLdel~r~l~~kl~~~fgg~ 41 (42)
T PF12221_consen 18 QGPPDLDELFRKLQDKLGGLFGGG 41 (42)
T ss_pred CCCCCHHHHHHHHHHHHhcccCCC
Confidence 359999999999999999999864
No 48
>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. These two proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and, interact with a variety of proteins. Flotillins may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis.
Probab=96.45 E-value=0.0015 Score=56.11 Aligned_cols=48 Identities=8% Similarity=-0.077 Sum_probs=43.9
Q ss_pred CchHHhhhhhHHHHHHHHHHhhhhcCCc----ceEEeccCCCcHHHHHHHHH
Q psy14362 2 SDSRDDMMETEINNHAIVVTNDVAHNNK----DRQKIFGDQLKVSIMHAGGR 49 (422)
Q Consensus 2 ~~~~~~l~~r~~i~~~i~~~~~~~~~~w----~~vei~di~~~~~~~~am~~ 49 (422)
..|++++++|++++++|.+.++...++| .+|.|+||.+|++..+++.+
T Consensus 75 ~tl~el~~~R~~i~~~i~~~v~~~~~~~Gi~i~~v~I~~i~~~~~~~~~~~~ 126 (128)
T cd03399 75 MTVEEIYEDRDKFAEQVQEVVAPDLNKMGLELDSFTIKDITDTDGYLNNLGD 126 (128)
T ss_pred CCHHHHHHhHHHHHHHHHHHHHHHHHHCCCEEEEEeeEEecCCCCCHHHcCC
Confidence 3689999999999999999999999999 99999999999997776643
No 49
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=96.24 E-value=0.32 Score=43.62 Aligned_cols=80 Identities=10% Similarity=0.160 Sum_probs=62.8
Q ss_pred CceEEEEEEEEEEecchHHHHHhhcChHHHHHHHHHHHHHHHhcccchhHHHh--hHHHHHHHHHHHHHHHhhcCCeEEE
Q psy14362 269 SVTVSVDAVVYYRVSNATISVANVANAHHSTKLLAQTTLRNVMGTRPLHEILS--EREAISNTMQLALDEATEDWGIKVE 346 (422)
Q Consensus 269 ~~~V~V~~~V~yrI~d~~~~~~~~~~~~~~l~~~~~~alR~vv~~~tld~ll~--~R~~i~~~i~~~L~~~l~~~GI~V~ 346 (422)
+...-+.+.+.|++.|... .-.++... ..+++++...+++.|.+++-+ +++.+..++++.+++.|..-+ .|.
T Consensus 76 ~~~~~v~i~i~l~~~n~~~-~~el~~~~----p~vrd~li~lfsskt~~eL~t~~Gke~Lk~ei~~~in~~L~~g~-~V~ 149 (159)
T COG1580 76 PKDRYVKIAITLEVANKAL-LEELEEKK----PEVRDALLMLFSSKTAAELSTPEGKEKLKAEIKDRINTILKEGQ-VVK 149 (159)
T ss_pred CCcEEEEEEEEEeeCCHHH-HHHHHHhh----HHHHHHHHHHHHhCCHHHhcCchhHHHHHHHHHHHHHHHHhcCC-eeE
Confidence 5667788999999966543 22222222 357788999999999999998 599999999999999998755 889
Q ss_pred EEEeeccC
Q psy14362 347 RVEIKDVR 354 (422)
Q Consensus 347 ~V~I~~i~ 354 (422)
+|.++++.
T Consensus 150 dV~fT~fi 157 (159)
T COG1580 150 DVLFTNFI 157 (159)
T ss_pred EEeeehhh
Confidence 99888764
No 50
>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins. This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role i
Probab=94.94 E-value=0.042 Score=45.42 Aligned_cols=49 Identities=4% Similarity=-0.128 Sum_probs=45.0
Q ss_pred CchHHhhhhhHHHHHHHHHHhhhhcCCc----ceEEeccCCCcHHHHHHHHHH
Q psy14362 2 SDSRDDMMETEINNHAIVVTNDVAHNNK----DRQKIFGDQLKVSIMHAGGRE 50 (422)
Q Consensus 2 ~~~~~~l~~r~~i~~~i~~~~~~~~~~w----~~vei~di~~~~~~~~am~~~ 50 (422)
..++++.++|++|++.+++.+....+.| .++.|.++.+|+++.++++..
T Consensus 68 ~~~~~~~~~r~~i~~~v~~~l~~~~~~~Gi~i~~v~i~~i~~~~~~~~ai~~~ 120 (121)
T cd02106 68 MTLDELLEDRDEIAAEVREALQEDLDKYGIEVVDVRIKDIDPPEEVQEAMEDR 120 (121)
T ss_pred ccHHHHHhhHHHHHHHHHHHHHHHHHhcCCEEEEEEEEecCCCHHHHHHHHhh
Confidence 3578899999999999999999999999 999999999999999998753
No 51
>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365. Its function is not known. The proteins in this family are found in bacteria. They are about 330 amino acids in length and encoded by a gene located in an operon which confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins.
Probab=94.67 E-value=0.45 Score=45.92 Aligned_cols=104 Identities=15% Similarity=0.250 Sum_probs=77.0
Q ss_pred EEeecCCCccccCCCceEEEEEEEEEEecchHHHHHhhcChHHHHHHHHHHHHHHHhcccchhHHHhhHHHHHHHHHHHH
Q psy14362 255 RTYDVPPQEVLTKDSVTVSVDAVVYYRVSNATISVANVANAHHSTKLLAQTTLRNVMGTRPLHEILSEREAISNTMQLAL 334 (422)
Q Consensus 255 ~~~~~~~~~~~T~D~~~V~V~~~V~yrI~d~~~~~~~~~~~~~~l~~~~~~alR~vv~~~tld~ll~~R~~i~~~i~~~L 334 (422)
..++.|......+||..+.+...|..|-+ -+-+..-...+..+-.+-+..+-.+=+.-+..+++.+-+.|++.+.+.
T Consensus 125 kVI~~P~i~aVAkdGIql~~kArVTVRaN--i~rLVGGAgEeTIiARVGEgIVttiGSa~~hk~VLEnPd~ISk~VL~k- 201 (316)
T PF12127_consen 125 KVIDTPTIAAVAKDGIQLKVKARVTVRAN--IDRLVGGAGEETIIARVGEGIVTTIGSAESHKEVLENPDSISKTVLEK- 201 (316)
T ss_pred eeecCcchhhhhcCCeEEEEEEEEEEEec--HHHhccCCCcHHHHHHHccceeeeeccchhHHHHhcCHHHHHHHHHhh-
Confidence 33444555567899999999888888872 233455566777788888888877777888899999999999887653
Q ss_pred HHHhh-cCCeEEEEEEeeccCCcHHHHHHH
Q psy14362 335 DEATE-DWGIKVERVEIKDVRLPVQLQRAM 363 (422)
Q Consensus 335 ~~~l~-~~GI~V~~V~I~~i~~P~~v~~Ai 363 (422)
-|+ ..-++|.++.|-|++.-+.+=..+
T Consensus 202 --gLDagTAFeIlSIDIaDidVG~NIGA~L 229 (316)
T PF12127_consen 202 --GLDAGTAFEILSIDIADIDVGENIGAKL 229 (316)
T ss_pred --CCCcCceeEEEEeeeeccccchhhchhh
Confidence 444 357999999999999877654433
No 52
>PF11978 MVP_shoulder: Shoulder domain; InterPro: IPR021870 This domain is found in the Major Vault Protein and has been called the shoulder domain []. This family includes two bacterial proteins A6FXE2 from SWISSPROT and A1ZGE7 from SWISSPROT. This suggests that some bacteria may possess vault particles. ; PDB: 2ZUO_G 2QZV_B 2ZV5_c 2ZV4_Y.
Probab=94.17 E-value=0.27 Score=41.42 Aligned_cols=92 Identities=9% Similarity=0.119 Sum_probs=66.0
Q ss_pred cccCCCceEEEEEEEEEEec----chH--HHHHhhcChHHHHHHHHHHHHHHHhcccchhHHHhhHHHH-HHHHH-----
Q psy14362 264 VLTKDSVTVSVDAVVYYRVS----NAT--ISVANVANAHHSTKLLAQTTLRNVMGTRPLHEILSEREAI-SNTMQ----- 331 (422)
Q Consensus 264 ~~T~D~~~V~V~~~V~yrI~----d~~--~~~~~~~~~~~~l~~~~~~alR~vv~~~tld~ll~~R~~i-~~~i~----- 331 (422)
+-|+|...+.+..+..|+.. ++. ..+|++.|+-...-..+-+-+|..+++.+.+++..+-..| ...+.
T Consensus 11 VET~DhArL~L~LsYnw~F~v~~~~~~~~~k~F~VpDFVGd~Ck~iaSRIR~aVa~~~Fd~FHknSa~iiR~aVFg~~~~ 90 (118)
T PF11978_consen 11 VETADHARLQLQLSYNWHFDVDRKDPEDAAKLFSVPDFVGDACKAIASRIRGAVASVTFDDFHKNSARIIRQAVFGFDEN 90 (118)
T ss_dssp EE-TT-EEEEEEEEEEEEE--TTTHHHHHHHTTSSTTHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHSTS---
T ss_pred EeecccceeeEEEEEEEEEecCCCChhHHHHhcCCcchHHHHHHHHHHHHHHHHhcCcHHHHcccHHHHHHHHhcCCCCC
Confidence 45899999999999999884 333 4579999998889999999999999999999999863332 22211
Q ss_pred HHHH--HHhhcCCeEEEEEEeeccCC
Q psy14362 332 LALD--EATEDWGIKVERVEIKDVRL 355 (422)
Q Consensus 332 ~~L~--~~l~~~GI~V~~V~I~~i~~ 355 (422)
..++ -.+..-|+.|++|.|+++.|
T Consensus 91 ~~~r~~~~F~~N~LvIt~vDvqsvEp 116 (118)
T PF11978_consen 91 GEVRDGLRFPANNLVITSVDVQSVEP 116 (118)
T ss_dssp E--SS-EEETTTTEEEEEEEEEEEEE
T ss_pred CCccceeEEcCCCeEEEEEeeeEecc
Confidence 1111 11234599999999999876
No 53
>PRK06654 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=92.69 E-value=2.3 Score=38.83 Aligned_cols=83 Identities=13% Similarity=0.237 Sum_probs=56.7
Q ss_pred cccCCC--ceEEEEEEEEEEecchHHHHHhhcChHHHHHHHHHHHHHHHhcccchhHHHhhHHHHHHHHHHHHHHHhhcC
Q psy14362 264 VLTKDS--VTVSVDAVVYYRVSNATISVANVANAHHSTKLLAQTTLRNVMGTRPLHEILSEREAISNTMQLALDEATEDW 341 (422)
Q Consensus 264 ~~T~D~--~~V~V~~~V~yrI~d~~~~~~~~~~~~~~l~~~~~~alR~vv~~~tld~ll~~R~~i~~~i~~~L~~~l~~~ 341 (422)
+.+.|. ...-+.+++.|...|+.. .-....- ...+++++..++++.+.+|+- +++.+.+++++.++..|.+-
T Consensus 93 vNLaD~~~~r~~vki~l~~e~~d~~l-~~EL~~r----~pqIRD~Ii~~LssKt~~eL~-Gk~~LKeEI~~rIN~iL~~G 166 (181)
T PRK06654 93 GNTADTPPKTFVVKLALGYAENNKNI-LNELGRR----KVRLKDIIREYFSQKTGQELK-NESQIKAEIKARINSILRNG 166 (181)
T ss_pred EEcCCCCCceEEEEEEEEEEcCCHHH-HHHHHhc----cHHHHHHHHHHHHhCCHHHHc-CHHHHHHHHHHHHHHhcCCC
Confidence 334444 444577788888755543 2222222 234667778888889999999 88999999999999888753
Q ss_pred CeEEEEEEeeccC
Q psy14362 342 GIKVERVEIKDVR 354 (422)
Q Consensus 342 GI~V~~V~I~~i~ 354 (422)
.|.+|.++++.
T Consensus 167 --kV~~VYFTeFv 177 (181)
T PRK06654 167 --EIKDIAFTQID 177 (181)
T ss_pred --ceEEEEEEEEE
Confidence 47777777653
No 54
>PRK13665 hypothetical protein; Provisional
Probab=92.03 E-value=0.79 Score=44.06 Aligned_cols=104 Identities=15% Similarity=0.244 Sum_probs=72.3
Q ss_pred EEeecCCCccccCCCceEEEEEEEEEEecchHHHHHhhcChHHHHHHHHHHHHHHHhcccchhHHHhhHHHHHHHHHHHH
Q psy14362 255 RTYDVPPQEVLTKDSVTVSVDAVVYYRVSNATISVANVANAHHSTKLLAQTTLRNVMGTRPLHEILSEREAISNTMQLAL 334 (422)
Q Consensus 255 ~~~~~~~~~~~T~D~~~V~V~~~V~yrI~d~~~~~~~~~~~~~~l~~~~~~alR~vv~~~tld~ll~~R~~i~~~i~~~L 334 (422)
..++.|......+||..+.+...|..|-+ -.-+..-...+..+-.+-+..+-.+=+.-+-.+++.+-+.|++.+.
T Consensus 130 kVI~~P~i~aVAkdGIql~~kARVTVRaN--i~rLVGGAgEeTIiARVGEgIVttIGSa~~hk~VLEnPd~ISk~VL--- 204 (316)
T PRK13665 130 KVIETPFIAAVAKDGIEVKAKARVTVRAN--IDRLVGGAGEETIIARVGEGIVSTIGSSESHKEVLENPDSISKTVL--- 204 (316)
T ss_pred eeecCCcchhhcccCeEEEEEEEEEeehh--HHHHhCCCcceeeEeeecCceeecccCcchHHHHhcCHHHHHHHHH---
Confidence 34454555577899999998888887752 1233444445555666666776666677788899999999986654
Q ss_pred HHHhhc-CCeEEEEEEeeccCCcHHHHHHH
Q psy14362 335 DEATED-WGIKVERVEIKDVRLPVQLQRAM 363 (422)
Q Consensus 335 ~~~l~~-~GI~V~~V~I~~i~~P~~v~~Ai 363 (422)
.+-|+. .-++|.++.|-|++.-+.+=..+
T Consensus 205 ~kGLDagTAFeIlSIDIADvdVG~NIGA~L 234 (316)
T PRK13665 205 SKGLDAGTAFEILSIDIADVDVGKNIGAKL 234 (316)
T ss_pred hccCCcCceeEEEEEeeeccccchhhchhh
Confidence 444553 57999999999999887654433
No 55
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=91.65 E-value=5.9 Score=35.71 Aligned_cols=50 Identities=10% Similarity=0.069 Sum_probs=40.4
Q ss_pred HHHHHHHHHhcccchhHHHh--hHHHHHHHHHHHHHHHhhcCCeEEEEEEeecc
Q psy14362 302 LAQTTLRNVMGTRPLHEILS--EREAISNTMQLALDEATEDWGIKVERVEIKDV 353 (422)
Q Consensus 302 ~~~~alR~vv~~~tld~ll~--~R~~i~~~i~~~L~~~l~~~GI~V~~V~I~~i 353 (422)
.+++.+-.++++.+.+++.+ +++.+.+++.+.++..+.+- .|++|.++++
T Consensus 112 ~Ird~i~~~Ls~~~~~~L~~~~Gk~~Lr~ei~~~in~~l~~~--~V~~VlFt~F 163 (166)
T PRK12785 112 RVTDAFQTYLRELRPSDLNGSAGLFRLKEELLRRVNVALAPA--QVNAVLFKEV 163 (166)
T ss_pred HHHHHHHHHHHhCCHHHhcChHHHHHHHHHHHHHHHhhcCCC--ceeEEEEEee
Confidence 45566677788899999987 59999999999999988763 4888888765
No 56
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=89.73 E-value=7 Score=34.29 Aligned_cols=50 Identities=16% Similarity=0.285 Sum_probs=41.8
Q ss_pred HHHHHHHHHhcccchhHHHh--hHHHHHHHHHHHHHHHhhcCCeEEEEEEeecc
Q psy14362 302 LAQTTLRNVMGTRPLHEILS--EREAISNTMQLALDEATEDWGIKVERVEIKDV 353 (422)
Q Consensus 302 ~~~~alR~vv~~~tld~ll~--~R~~i~~~i~~~L~~~l~~~GI~V~~V~I~~i 353 (422)
.+++.+-.++++.+.+|+-+ +|+.+.+++++.++..+.+ | .|.+|.++++
T Consensus 88 ~Ird~ii~~L~~~~~~~l~~~~G~~~Lr~el~~~in~~l~~-g-~V~~Vyft~f 139 (142)
T PRK07718 88 QVKNIIIEELADMNAEDFKGKKGLEALKEQLKEKINNLMQE-G-KVEKVYITSF 139 (142)
T ss_pred hhHHHHHHHHHcCCHHHhcChhHHHHHHHHHHHHHHHhhcc-C-ceEEEEEEee
Confidence 46677777888899999987 6999999999999998876 4 6888888764
No 57
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=86.66 E-value=23 Score=31.67 Aligned_cols=78 Identities=8% Similarity=0.083 Sum_probs=52.0
Q ss_pred CceEEEEEEEEEEecchHHHHHhhcChHHHHHHHHHHHHHHHhcccchhHHHh--hHHHHHHHHHHHHHHHhhcCC--eE
Q psy14362 269 SVTVSVDAVVYYRVSNATISVANVANAHHSTKLLAQTTLRNVMGTRPLHEILS--EREAISNTMQLALDEATEDWG--IK 344 (422)
Q Consensus 269 ~~~V~V~~~V~yrI~d~~~~~~~~~~~~~~l~~~~~~alR~vv~~~tld~ll~--~R~~i~~~i~~~L~~~l~~~G--I~ 344 (422)
...+.+++++. +.|+.. .-.+.... ..+++.+-.++++.+.+++.+ +++.+.+++++.++..+..-+ -.
T Consensus 78 ~rylkv~i~L~--~~~~~~-~~~l~~~~----p~IRd~ii~~Ls~k~~~~L~~~eGk~~Lk~ei~~~in~~l~~~~~~~~ 150 (162)
T PRK07021 78 DRVLYVGLTLR--LPDEAT-RERLKDYL----PEVRSRLLLLLSRKHAAELATEEGKQKLAAEIKQTLSQPLVPGQPPQV 150 (162)
T ss_pred ceEEEEEEEEE--ECCHHH-HHHHHHhC----HHHHHHHHHHHhcCCHHHhcCHHHHHHHHHHHHHHHHHHHhccCCCCc
Confidence 44555555554 445543 22222222 236666777788899999987 699999999999999987532 35
Q ss_pred EEEEEeecc
Q psy14362 345 VERVEIKDV 353 (422)
Q Consensus 345 V~~V~I~~i 353 (422)
|.+|.++++
T Consensus 151 V~~VlFt~f 159 (162)
T PRK07021 151 VTDVLFTAF 159 (162)
T ss_pred eeEEeeeec
Confidence 888887764
No 58
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=86.19 E-value=27 Score=32.00 Aligned_cols=50 Identities=16% Similarity=0.329 Sum_probs=41.8
Q ss_pred HHHHHHHHHhcccchhHHHh--hHHHHHHHHHHHHHHHhhcCCeEEEEEEeecc
Q psy14362 302 LAQTTLRNVMGTRPLHEILS--EREAISNTMQLALDEATEDWGIKVERVEIKDV 353 (422)
Q Consensus 302 ~~~~alR~vv~~~tld~ll~--~R~~i~~~i~~~L~~~l~~~GI~V~~V~I~~i 353 (422)
.+++++-.++++.+.+++.+ +++.+.+++.+.++..+.+ | .|.+|.++++
T Consensus 128 ~IRD~ii~~Ls~kt~~dL~t~~Gk~~Lk~ei~~~iN~~L~~-g-~V~~VyFT~F 179 (182)
T PRK08455 128 VIRDIIIRILSSKTVEEVSTNKGKERLKDEIVGKLNEFLID-G-FIKNVFFTDF 179 (182)
T ss_pred HHHHHHHHHHHcCCHHHhcCHHHHHHHHHHHHHHHHHHhcc-C-ceeEEEeEee
Confidence 46777778888999999987 5999999999999999976 3 5788888765
No 59
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=84.85 E-value=29 Score=31.25 Aligned_cols=53 Identities=15% Similarity=0.247 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhcccchhHHHh--hHHHHHHHHHHHHHHHhhcC-C-eEEEEEEeecc
Q psy14362 301 LLAQTTLRNVMGTRPLHEILS--EREAISNTMQLALDEATEDW-G-IKVERVEIKDV 353 (422)
Q Consensus 301 ~~~~~alR~vv~~~tld~ll~--~R~~i~~~i~~~L~~~l~~~-G-I~V~~V~I~~i 353 (422)
..+++.+-.++++.+.+++-+ +++.+.+++.+.++..++.. | -.|.+|.++++
T Consensus 111 p~IRd~i~~~Ls~k~~~~L~~~~gk~~Lr~el~~~i~~~l~~~~g~~~V~~VlFt~f 167 (170)
T PRK05696 111 PLIESALLMTFSSATVDQLSTPAGKEELRQKALASVQETLQKVTGKPVVEKVLFTGF 167 (170)
T ss_pred HHHHHHHHHHHhcCCHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCceeEEeeeec
Confidence 346778888889999999987 59999999998888887653 3 25888888765
No 60
>PF03748 FliL: Flagellar basal body-associated protein FliL; InterPro: IPR005503 This FliL protein controls the rotational direction of the flagella during chemotaxis []. FliL is a cytoplasmic membrane protein associated with the basal body [].; GO: 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009425 bacterial-type flagellum basal body
Probab=82.02 E-value=24 Score=28.22 Aligned_cols=50 Identities=10% Similarity=0.224 Sum_probs=40.5
Q ss_pred HHHHHHHHHhcccchhHHHh--hHHHHHHHHHHHHHHHhhcCCeEEEEEEeecc
Q psy14362 302 LAQTTLRNVMGTRPLHEILS--EREAISNTMQLALDEATEDWGIKVERVEIKDV 353 (422)
Q Consensus 302 ~~~~alR~vv~~~tld~ll~--~R~~i~~~i~~~L~~~l~~~GI~V~~V~I~~i 353 (422)
.+.+++..++++.+.+++-+ +++.+.+++.+.+++.+.+- .|.+|.++++
T Consensus 45 ~ird~ii~~l~~~~~~~l~~~~g~~~Lk~~l~~~in~~l~~~--~V~~V~ft~f 96 (99)
T PF03748_consen 45 RIRDAIISYLSSKTAEDLSGPEGKERLKDELKDRINKILGKG--KVKDVYFTDF 96 (99)
T ss_pred HHHHHHHHHHHcCCHHHhcChhhHHHHHHHHHHHHHHhhccC--cEEEEEEEEE
Confidence 56777788888899999997 59999999999999988542 3777777654
No 61
>PRK05697 flagellar basal body-associated protein FliL-like protein; Validated
Probab=66.19 E-value=53 Score=28.62 Aligned_cols=75 Identities=21% Similarity=0.188 Sum_probs=51.6
Q ss_pred EEEEEEEEecchHHHHHhhcChHHHHHHHHHHHHHHHhcccchhHHHh--hHHHHHHHHHHHHHHHhhcC-C-eEEEEEE
Q psy14362 274 VDAVVYYRVSNATISVANVANAHHSTKLLAQTTLRNVMGTRPLHEILS--EREAISNTMQLALDEATEDW-G-IKVERVE 349 (422)
Q Consensus 274 V~~~V~yrI~d~~~~~~~~~~~~~~l~~~~~~alR~vv~~~tld~ll~--~R~~i~~~i~~~L~~~l~~~-G-I~V~~V~ 349 (422)
+.+.+..++.|+... -.+.... ..+++.+-..+++.+.+++-+ +|+.+.+++.+.++..+..- | -.|++|.
T Consensus 56 Lkv~i~l~~~d~~~~-~~le~~~----P~IRd~ii~lLs~~t~~eL~t~eGke~Lr~eil~~in~~L~~~~g~~~V~~Vl 130 (137)
T PRK05697 56 VKIDVELMVKDPDDL-AAVEHHD----PLIRNALVELLGQQTEDKVKSLTGREEIRQECLKQVNELLEQETGKPLVVDLL 130 (137)
T ss_pred EEEEEEEEECCHHHH-HHHHHhC----HHHHHHHHHHHHcCCHHHhcCHHHHHHHHHHHHHHHHHHHhhccCCCceeEEe
Confidence 344444456666532 2222222 346777788889999999987 69999999999999999752 2 2578888
Q ss_pred eecc
Q psy14362 350 IKDV 353 (422)
Q Consensus 350 I~~i 353 (422)
++++
T Consensus 131 FT~F 134 (137)
T PRK05697 131 FTKY 134 (137)
T ss_pred eeee
Confidence 7764
No 62
>PRK04057 30S ribosomal protein S3Ae; Validated
Probab=50.70 E-value=1.1e+02 Score=28.59 Aligned_cols=82 Identities=12% Similarity=0.186 Sum_probs=58.2
Q ss_pred ccccCCCceEEEEEEEEEEecchHHHHHhhcChHHHHHHHHHHHHHHHhcccchhHHHhh--HHHHHHHHHHHHHHHhhc
Q psy14362 263 EVLTKDSVTVSVDAVVYYRVSNATISVANVANAHHSTKLLAQTTLRNVMGTRPLHEILSE--REAISNTMQLALDEATED 340 (422)
Q Consensus 263 ~~~T~D~~~V~V~~~V~yrI~d~~~~~~~~~~~~~~l~~~~~~alR~vv~~~tld~ll~~--R~~i~~~i~~~L~~~l~~ 340 (422)
.+.|+||..+.+-+.+.-.-. ........+|....+.+...+++.+++++... -+.|+.+|....+...--
T Consensus 101 dvkTkDGy~lRv~~i~~T~~r-------a~~sq~~~IRk~m~~~i~~~~~~~~~~e~V~~~i~g~i~~eI~~~~k~IyPl 173 (203)
T PRK04057 101 DVTTKDGYKVRVKPVALTTKR-------ARTSQKHAIRKIMEEIIEEKASELTFEEFVQEIVFGKLASEIYKEAKKIYPL 173 (203)
T ss_pred EEEcCCCCEEEEEEEEEEchh-------hhhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHccchHHHHHHHhhhhccCc
Confidence 578999999888776643221 22345567888899999999999999999975 566777777776665333
Q ss_pred CCeEEEEEEee
Q psy14362 341 WGIKVERVEIK 351 (422)
Q Consensus 341 ~GI~V~~V~I~ 351 (422)
--++|..+.+.
T Consensus 174 r~veIrKvkvl 184 (203)
T PRK04057 174 RRVEIRKSKVL 184 (203)
T ss_pred ceEEEEEEEEE
Confidence 35666666555
No 63
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.19 E-value=55 Score=35.10 Aligned_cols=76 Identities=13% Similarity=-0.016 Sum_probs=64.2
Q ss_pred chHHhhhhhHHHHHHHHHHhhhhcCCc----ceEEeccCCCc-------HHHHHHHHHHhhchhhhhhhHHHHhhchHHH
Q psy14362 3 DSRDDMMETEINNHAIVVTNDVAHNNK----DRQKIFGDQLK-------VSIMHAGGREFDRGQKIDKRYIFIAAEGEHK 71 (422)
Q Consensus 3 ~~~~~l~~r~~i~~~i~~~~~~~~~~w----~~vei~di~~~-------~~~~~am~~~~~ae~~r~~~a~~~~a~~~~~ 71 (422)
.+.++.++|..-...+.+.+....+.- +++.|+|+.-+ ....+|..+--.+ +-.+++.|..+|.+++
T Consensus 156 t~~el~edR~~F~~~V~~~v~~dL~k~Gl~l~s~~I~~i~d~~~~~~d~~~yLda~G~r~i~--qv~~~a~ia~~E~~~~ 233 (548)
T COG2268 156 TVEELNEDRLGFAQVVQEVVGDDLSKMGLVLDSLAINDINDTSKENQDPNNYLDALGRRRIA--QVLQDAEIAENEAEKE 233 (548)
T ss_pred CHHHHhhHHhhHHHHHHHHHHHHHHhcCeeeeeeeecccccccccccChhhhhhhcChHHHH--HHHHHHHHHHhhhhhh
Confidence 456889999999999999998888865 99999999999 9999998888667 5677788999999988
Q ss_pred HHHHHHHHH
Q psy14362 72 ASRALREAS 80 (422)
Q Consensus 72 ~~~~~~~a~ 80 (422)
..+...++-
T Consensus 234 t~i~i~~a~ 242 (548)
T COG2268 234 TEIAIAEAN 242 (548)
T ss_pred hHHHHHhhh
Confidence 877776543
No 64
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=38.88 E-value=2.8e+02 Score=30.64 Aligned_cols=55 Identities=18% Similarity=0.224 Sum_probs=32.7
Q ss_pred HHHHHH-HhhcCCeEEEEEE----eeccCCcHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy14362 331 QLALDE-ATEDWGIKVERVE----IKDVRLPVQLQRAMAAEAEATREARAKVIAAEGEHK 385 (422)
Q Consensus 331 ~~~L~~-~l~~~GI~V~~V~----I~~i~~P~~v~~Ai~~~~~Ae~ea~A~i~~Ae~ea~ 385 (422)
-..|.+ .|...||.|++-. +-....|++++...+++..++.+++.+..+++.+++
T Consensus 520 ~D~iRd~~L~~~Gi~l~D~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (651)
T PTZ00399 520 CDKLRDEWLPNLGIRIEDKPDGPSVWKLDDKEELQREKEEKEALKEQKRLRKLKKQEEKK 579 (651)
T ss_pred HHHHHHHHHHHCCCEEEEcCCCceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555 5888899999852 223345677777777666655555544444443333
No 65
>smart00244 PHB prohibitin homologues. prohibitin homologues
Probab=35.43 E-value=23 Score=30.59 Aligned_cols=28 Identities=11% Similarity=-0.078 Sum_probs=26.0
Q ss_pred CchHHhhh-hhHHHHHHHHHHhhhhcCCc
Q psy14362 2 SDSRDDMM-ETEINNHAIVVTNDVAHNNK 29 (422)
Q Consensus 2 ~~~~~~l~-~r~~i~~~i~~~~~~~~~~w 29 (422)
.+++++++ +|+++++.+++.+.+..++|
T Consensus 106 ~~~~~i~~~~r~~i~~~v~~~l~~~~~~~ 134 (160)
T smart00244 106 MTLDELLTDEREKISENIREELNERAEAW 134 (160)
T ss_pred ccHHHHHHhhHHHHHHHHHHHHHHHHHhC
Confidence 46899999 79999999999999999999
No 66
>COG4864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.61 E-value=2.3e+02 Score=26.83 Aligned_cols=88 Identities=13% Similarity=0.199 Sum_probs=52.7
Q ss_pred CCCceEEEEEEEEEEecchHHHHHhhcChHHHHHHHHHHHHHHHhcccchhHHHhhHHHHHHHHHHHHHHHhh-cCCeEE
Q psy14362 267 KDSVTVSVDAVVYYRVSNATISVANVANAHHSTKLLAQTTLRNVMGTRPLHEILSEREAISNTMQLALDEATE-DWGIKV 345 (422)
Q Consensus 267 ~D~~~V~V~~~V~yrI~d~~~~~~~~~~~~~~l~~~~~~alR~vv~~~tld~ll~~R~~i~~~i~~~L~~~l~-~~GI~V 345 (422)
-||..|.....+..|- .-.-+..-...+..+-.+-+..+-.+-++..-.+++.+-+.|++.+.+ +-|+ ..-+++
T Consensus 141 m~gievkakaritvra--ni~rlvggageetviarvgegivstigss~~h~~vlenpd~isktvl~---kgld~gtafei 215 (328)
T COG4864 141 MNGIEVKAKARITVRA--NIERLVGGAGEETVIARVGEGIVSTIGSSDEHTKVLENPDSISKTVLE---KGLDSGTAFEI 215 (328)
T ss_pred ccceEEEEEEEEEehh--hHHHHhCCCCchhhhhhhccceeeccCCCcchhhHhcCccHHHHHHHH---ccCCCCceeEE
Confidence 4555555444443332 222344444555556555555554444555667888888888887654 2333 246899
Q ss_pred EEEEeeccCCcHHH
Q psy14362 346 ERVEIKDVRLPVQL 359 (422)
Q Consensus 346 ~~V~I~~i~~P~~v 359 (422)
.++.|-+++....+
T Consensus 216 lsidiadvdigkni 229 (328)
T COG4864 216 LSIDIADVDIGKNI 229 (328)
T ss_pred EEeeeecccccccc
Confidence 99999998887654
No 67
>PHA02571 a-gt.4 hypothetical protein; Provisional
Probab=28.58 E-value=3.5e+02 Score=22.63 Aligned_cols=59 Identities=17% Similarity=0.177 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhh
Q psy14362 360 QRAMAAEAEATREARAKVIAAEGEHKASRALREASEVISDSPAALQLRYLQFQYSKFSA 418 (422)
Q Consensus 360 ~~Ai~~~~~Ae~ea~A~i~~Ae~ea~aa~~~aeAa~~l~~~p~~~~lr~lE~~~~~l~~ 418 (422)
..-+.++.+++.+++|...-...-++..+...-|...+-++....-.-.|.|+.+++++
T Consensus 20 ~~~~q~~~e~eA~kkA~K~lkKN~rEIkRL~~HAe~al~~~Nk~~Y~YAI~KLR~i~kQ 78 (109)
T PHA02571 20 LSELQARNEAEAEKKAAKILKKNRREIKRLKKHAEEALFDNNKEQYVYAIKKLRDIYKQ 78 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHcC
Confidence 33445555666777777777777777777666666555444333334456666666654
No 68
>PF01015 Ribosomal_S3Ae: Ribosomal S3Ae family; InterPro: IPR001593 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists of proteins that have from 220 to 250 amino acids and represents Rps1 (eukaryotic) and Rps3Ae (archaeal and eukaryotic).; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XZN_4 2XZM_4 3U5C_B 3U5G_B.
Probab=27.70 E-value=1.9e+02 Score=26.77 Aligned_cols=68 Identities=13% Similarity=0.177 Sum_probs=46.6
Q ss_pred ccccCCCceEEEEEEEEEEecchHHHHHhhcChHHHHHHHHHHHHHHHhcccchhHHHhh--HHHHHHHHHHHHHHH
Q psy14362 263 EVLTKDSVTVSVDAVVYYRVSNATISVANVANAHHSTKLLAQTTLRNVMGTRPLHEILSE--REAISNTMQLALDEA 337 (422)
Q Consensus 263 ~~~T~D~~~V~V~~~V~yrI~d~~~~~~~~~~~~~~l~~~~~~alR~vv~~~tld~ll~~--R~~i~~~i~~~L~~~ 337 (422)
.+.|+||..+.+-+...=+=. ........++....+.+.+.+++.+++++... -+.++.+|....+..
T Consensus 107 dvkT~DGy~lRvf~i~fT~~r-------a~~sq~~~IRk~m~~ii~~~~~~~~~~e~V~~li~~~i~~eI~k~~k~I 176 (194)
T PF01015_consen 107 DVKTKDGYLLRVFCIAFTKKR-------AKSSQIKAIRKKMVEIITEEASELDLKELVKKLIPGSIGKEIEKACKKI 176 (194)
T ss_dssp EEEETTTEEEEEEEEEEE-----------TCHHHHHHHHHHHHHHHHHCCTSHHHHHHHHHCTTHHHHHHHHHHCTT
T ss_pred EEEcCCCcEEEEEEEEEEeec-------ccchHHHHHHHHHHHHHHHHhccCcHHHHHHHHccchHHHHHHHHhccc
Confidence 477999988876655432221 22234466888899999999999999999975 566666666655544
No 69
>COG3462 Predicted membrane protein [Function unknown]
Probab=27.45 E-value=1.4e+02 Score=25.10 Aligned_cols=14 Identities=21% Similarity=0.273 Sum_probs=6.4
Q ss_pred hhhhHHHHHhhhhc
Q psy14362 135 GSLMTGLSWFLVGI 148 (422)
Q Consensus 135 ~~~~~~~~~~~~~i 148 (422)
.|+++++.=++..+
T Consensus 9 ~w~ligliavi~~v 22 (117)
T COG3462 9 AWLLIGLIAVIAVV 22 (117)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555544444433
No 70
>KOG2962|consensus
Probab=26.68 E-value=3.1e+02 Score=26.20 Aligned_cols=41 Identities=2% Similarity=-0.036 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhhhhcCCc------ceEEeccCCCcHHHHHHHHHHhhc
Q psy14362 12 EINNHAIVVTNDVAHNNK------DRQKIFGDQLKVSIMHAGGREFDR 53 (422)
Q Consensus 12 ~~i~~~i~~~~~~~~~~w------~~vei~di~~~~~~~~am~~~~~a 53 (422)
|+|++.++..+.+..... ..|-+.-=.+|+.+.+-.+ +|++
T Consensus 142 DqIDE~lK~ALQ~Dl~~mAPGl~iqaVRVTKPkIPEaiRrN~E-~ME~ 188 (322)
T KOG2962|consen 142 DQIDENLKDALQADLTRMAPGLEIQAVRVTKPKIPEAIRRNFE-LMEA 188 (322)
T ss_pred HHHhHHHHHHHHHHHHhhCCCcEEEEEEecCCCChHHHHHhHH-HHHH
Confidence 667777777776655544 7788888889999988765 4666
No 71
>PF07009 DUF1312: Protein of unknown function (DUF1312); InterPro: IPR010739 This family consists of several bacterial proteins of around 120 residues in length. The function of this family is unknown.; PDB: 4ESN_B 1NPP_B 1M1G_D 1NPR_A 1M1H_A 2KPP_A 3LD7_C.
Probab=26.63 E-value=76 Score=26.49 Aligned_cols=21 Identities=24% Similarity=0.059 Sum_probs=12.1
Q ss_pred eeEEecCCeEEEEEECCeeec
Q psy14362 209 CFKVVQEYERAVIFRLGRLVS 229 (422)
Q Consensus 209 ~~~~V~~ge~gVv~~fGk~~~ 229 (422)
....-..+..++|+.-|+..+
T Consensus 19 ~~~~~~~~~~~~I~~~g~~~~ 39 (113)
T PF07009_consen 19 NSGNNSGGKYAVIYVDGKEVK 39 (113)
T ss_dssp ------SEEEEEEEETTEEEE
T ss_pred hcccCCCCeEEEEEECCEEEE
Confidence 445666777888889998764
No 72
>KOG2668|consensus
Probab=26.31 E-value=1.3e+02 Score=30.40 Aligned_cols=92 Identities=9% Similarity=0.008 Sum_probs=63.9
Q ss_pred HHhhhhhHHHHHHHHHHhhhhcCCc----ceEEeccCCCcH--HHHHHHHHHhhchhhhhhhHHHHhhchHHHHHHHHHH
Q psy14362 5 RDDMMETEINNHAIVVTNDVAHNNK----DRQKIFGDQLKV--SIMHAGGREFDRGQKIDKRYIFIAAEGEHKASRALRE 78 (422)
Q Consensus 5 ~~~l~~r~~i~~~i~~~~~~~~~~w----~~vei~di~~~~--~~~~am~~~~~ae~~r~~~a~~~~a~~~~~~~~~~~~ 78 (422)
.+++..|++-...+.+...--.++. -++-|||+.=.+ +-.+++.+.-+| +-.+.|+|-.||++.++-++.++
T Consensus 116 EEIyKdrk~F~k~Vfeva~~dl~~mGi~I~s~tiKdl~D~~g~~YlssLGka~ta--ev~rdArIgvAEAk~eaGikEa~ 193 (428)
T KOG2668|consen 116 EEIYKDRKEFKKEVFEVAQLDLGQMGIVIYSATIKDLVDVPGHEYLSSLGKATTA--EVARDARIGVAEAKREAGIKEAT 193 (428)
T ss_pred HHHHhhHHHHHHHHHHHhhhhhhhcceEEEEeEhhhhhcccchHHHHHhhhHHHH--HHHhhcccchHHhhhhcchhhhh
Confidence 5677788888888877766666665 788899986555 788888777777 56778888888888887655444
Q ss_pred ------HHHHhccChhHhhhhhhhcc
Q psy14362 79 ------ASEVISDSPAALQLRYLQIP 98 (422)
Q Consensus 79 ------a~~~~~~~~~a~~lr~l~~~ 98 (422)
++++.+++..+=.-|..+..
T Consensus 194 ~~~~~~aak~~aetkI~~~qR~~el~ 219 (428)
T KOG2668|consen 194 GLTEQNAAKIDAETKIASAQRTKELI 219 (428)
T ss_pred HHHHHhHHhhhhhhhHHHhhhhHHHH
Confidence 45555555555444543333
No 73
>COG1890 RPS1A Ribosomal protein S3AE [Translation, ribosomal structure and biogenesis]
Probab=25.16 E-value=5.8e+02 Score=24.00 Aligned_cols=85 Identities=13% Similarity=0.188 Sum_probs=58.9
Q ss_pred CccccCCCceEEEEEEEEEEecchHHHHHhhcChHHHHHHHHHHHHHHHhcccchhHHHhh--HHHHHHHHHHHHHHHhh
Q psy14362 262 QEVLTKDSVTVSVDAVVYYRVSNATISVANVANAHHSTKLLAQTTLRNVMGTRPLHEILSE--REAISNTMQLALDEATE 339 (422)
Q Consensus 262 ~~~~T~D~~~V~V~~~V~yrI~d~~~~~~~~~~~~~~l~~~~~~alR~vv~~~tld~ll~~--R~~i~~~i~~~L~~~l~ 339 (422)
..+.|+||..+.|.+.+.-+=. --......++....+.+.+-.+..++++++.. -+.++.+|.+.-++..-
T Consensus 108 ~dVkTkDGy~~RV~~~~~T~~r-------a~tSqk~aIRk~M~eii~~~a~e~~f~~fv~~li~g~i~~~I~~~akkIyP 180 (214)
T COG1890 108 VDVKTKDGYVLRVKAMAFTRRR-------AKTSQKRAIRKIMFEIIEEKASELTFEEFVQELIPGRIAAEIEEAAKKIYP 180 (214)
T ss_pred EEEEecCCcEEEEEEEEEEehh-------cccchHHHHHHHHHHHHHHHhccCCHHHHHHHHhhhhHHHHHHHHhhhccc
Confidence 3588999999888766532211 12234567888999999999999999999874 57777777776665532
Q ss_pred cCCeEEEEEEeecc
Q psy14362 340 DWGIKVERVEIKDV 353 (422)
Q Consensus 340 ~~GI~V~~V~I~~i 353 (422)
=--++|..+.+...
T Consensus 181 Lr~veIrK~kvl~~ 194 (214)
T COG1890 181 LRKVEIRKSKVLKE 194 (214)
T ss_pred chheEEEeeeeecc
Confidence 22567777666543
No 74
>PRK13665 hypothetical protein; Provisional
Probab=24.16 E-value=2e+02 Score=28.06 Aligned_cols=39 Identities=8% Similarity=0.057 Sum_probs=26.1
Q ss_pred HHhhhhhHHHHHHHHHH-hhhhcCCc-ceEEeccCCCcHHH
Q psy14362 5 RDDMMETEINNHAIVVT-NDVAHNNK-DRQKIFGDQLKVSI 43 (422)
Q Consensus 5 ~~~l~~r~~i~~~i~~~-~~~~~~~w-~~vei~di~~~~~~ 43 (422)
-++|++=|.|...+.+. +|..|.== .|+.|-||.+-+++
T Consensus 190 k~VLEnPd~ISk~VL~kGLDagTAFeIlSIDIADvdVG~NI 230 (316)
T PRK13665 190 KEVLENPDSISKTVLSKGLDAGTAFEILSIDIADVDVGKNI 230 (316)
T ss_pred HHHhcCHHHHHHHHHhccCCcCceeEEEEEeeeccccchhh
Confidence 46788888888665433 44443322 89999999887665
No 75
>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365. Its function is not known. The proteins in this family are found in bacteria. They are about 330 amino acids in length and encoded by a gene located in an operon which confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins.
Probab=23.14 E-value=1.7e+02 Score=28.69 Aligned_cols=39 Identities=8% Similarity=-0.031 Sum_probs=25.6
Q ss_pred HHhhhhhHHHHHHHHHHhhhhcCCc--ceEEeccCCCcHHH
Q psy14362 5 RDDMMETEINNHAIVVTNDVAHNNK--DRQKIFGDQLKVSI 43 (422)
Q Consensus 5 ~~~l~~r~~i~~~i~~~~~~~~~~w--~~vei~di~~~~~~ 43 (422)
-++|++=|.|...+.+.=-++.... .++.|-||.+-+++
T Consensus 185 k~VLEnPd~ISk~VL~kgLDagTAFeIlSIDIaDidVG~NI 225 (316)
T PF12127_consen 185 KEVLENPDSISKTVLEKGLDAGTAFEILSIDIADIDVGENI 225 (316)
T ss_pred HHHhcCHHHHHHHHHhhCCCcCceeEEEEeeeeccccchhh
Confidence 3577888888777654422222334 89999999887654
No 76
>COG4864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.03 E-value=1.9e+02 Score=27.48 Aligned_cols=39 Identities=8% Similarity=0.005 Sum_probs=27.0
Q ss_pred HHhhhhhHHHHHHHHHH-hhhhcCCc-ceEEeccCCCcHHH
Q psy14362 5 RDDMMETEINNHAIVVT-NDVAHNNK-DRQKIFGDQLKVSI 43 (422)
Q Consensus 5 ~~~l~~r~~i~~~i~~~-~~~~~~~w-~~vei~di~~~~~~ 43 (422)
-++|++-+.|.+.+.+. +|..|.-= .++.|-|+.+.+.+
T Consensus 189 ~~vlenpd~isktvl~kgld~gtafeilsidiadvdigkni 229 (328)
T COG4864 189 TKVLENPDSISKTVLEKGLDSGTAFEILSIDIADVDIGKNI 229 (328)
T ss_pred hhHhcCccHHHHHHHHccCCCCceeEEEEeeeecccccccc
Confidence 46788888888876654 34333322 88999999887765
No 77
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=20.63 E-value=1.9e+02 Score=27.48 Aligned_cols=38 Identities=16% Similarity=0.081 Sum_probs=22.5
Q ss_pred cchhhhhHHHHHhhhhccCCCchhhcc--HHHHHHHHhhhc
Q psy14362 132 GICGSLMTGLSWFLVGITLPFSLFVCF--KPYLNRINKVFS 170 (422)
Q Consensus 132 ~~~~~~~~~~~~~~~~i~~P~dL~~~~--r~~~~~L~~~fg 170 (422)
|+.+-|+++..|.+++..+.+ ++..| .-+++.+++..-
T Consensus 153 gi~aml~Vf~LF~lvmt~g~d-~m~fl~v~~ly~~ia~~ik 192 (230)
T PF03904_consen 153 GIGAMLFVFMLFALVMTIGSD-FMDFLHVDHLYKAIASKIK 192 (230)
T ss_pred hHHHHHHHHHHHHHHHHhccc-chhhhhHHHHHHHHHHHHh
Confidence 677777777777776655544 33333 356666665443
Done!