Query psy14362
Match_columns 422
No_of_seqs 379 out of 2329
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 17:58:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14362.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14362hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bk6_A PH stomatin; archaea, t 100.0 4.8E-32 1.6E-36 248.4 15.5 176 243-418 2-177 (188)
2 4fvg_A Stomatin; mixed alpha-b 99.9 1.1E-26 3.7E-31 201.2 11.1 131 239-369 3-133 (133)
3 2rpb_A Hypothetical membrane p 99.8 1.5E-20 5E-25 157.7 7.4 110 249-358 4-113 (113)
4 1win_A Flotillin 2; BAND 7 dom 99.8 4.2E-21 1.4E-25 168.1 3.2 128 243-370 3-139 (143)
5 3bk6_A PH stomatin; archaea, t 99.8 1.1E-18 3.7E-23 159.5 8.2 95 2-98 73-171 (188)
6 1win_A Flotillin 2; BAND 7 dom 98.8 1.3E-09 4.3E-14 94.9 2.6 53 2-54 83-139 (143)
7 4fvg_A Stomatin; mixed alpha-b 98.7 5.5E-09 1.9E-13 89.7 2.3 52 2-53 78-133 (133)
8 2zuo_A MVP, major vault protei 98.0 0.00016 5.6E-09 77.3 18.4 146 210-358 459-648 (861)
9 2rpb_A Hypothetical membrane p 97.1 0.00019 6.5E-09 59.0 2.8 41 2-42 69-113 (113)
10 3j20_A 30S ribosomal protein S 30.0 2.1E+02 0.0073 25.3 8.5 81 263-350 108-190 (198)
11 2d7c_C RAB11 family-interactin 29.8 34 0.0012 22.6 2.4 22 3-24 5-26 (42)
12 3e56_A Putative uncharacterize 21.1 1.4E+02 0.0046 23.0 4.6 43 5-47 52-102 (113)
No 1
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=99.98 E-value=4.8e-32 Score=248.40 Aligned_cols=176 Identities=50% Similarity=0.696 Sum_probs=165.8
Q ss_pred ccceEEEEEeeeEEeecCCCccccCCCceEEEEEEEEEEecchHHHHHhhcChHHHHHHHHHHHHHHHhcccchhHHHhh
Q psy14362 243 CMDSYVCVDLRTRTYDVPPQEVLTKDSVTVSVDAVVYYRVSNATISVANVANAHHSTKLLAQTTLRNVMGTRPLHEILSE 322 (422)
Q Consensus 243 ~i~~v~~v~~r~~~~~~~~~~~~T~D~~~V~V~~~V~yrI~d~~~~~~~~~~~~~~l~~~~~~alR~vv~~~tld~ll~~ 322 (422)
|++++..+|+|.++++++++.++|+|+++|+|+++++|||.||.++++++.|+...+.+.+++++|+++|++++++++++
T Consensus 2 fi~~v~~vd~r~~~~~v~~~~v~TkD~~~V~v~~~v~yrI~dp~~~~~~v~~~~~~i~~~~~~~lR~vig~~~l~ell~~ 81 (188)
T 3bk6_A 2 IFEKAVIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRVVDPVKAVTQVKNYIMATSQISQTTLRSVIGQAHLDELLSE 81 (188)
T ss_dssp CEEECCCCCSSCEEEEEEEEEEECTTSCEEEEEEEEEEEESCHHHHHHSSSCHHHHHHHHHHHHHHHHHHTSCHHHHHHC
T ss_pred ceEEEEEEeeeEEEEecCCceeEcCCCCEEEEEEEEEEEECCHHHHHHHhcCHHHHHHHHHHHHHHHHHccCCHHHHHhh
Confidence 57899999999999999988999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEEEEEeeccCCcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCHH
Q psy14362 323 REAISNTMQLALDEATEDWGIKVERVEIKDVRLPVQLQRAMAAEAEATREARAKVIAAEGEHKASRALREASEVISDSPA 402 (422)
Q Consensus 323 R~~i~~~i~~~L~~~l~~~GI~V~~V~I~~i~~P~~v~~Ai~~~~~Ae~ea~A~i~~Ae~ea~aa~~~aeAa~~l~~~p~ 402 (422)
|++|+..+++.+++.+++|||.|.+|.|++++||+++.++|.++++|+++++|.+.+|+|++++++..++|++.++.+|.
T Consensus 82 R~~i~~~i~~~l~~~~~~~GI~v~~v~I~~i~~p~ev~~a~~~~~~Aere~~A~i~~Aege~~a~~~~a~a~~~~~~~~~ 161 (188)
T 3bk6_A 82 RDKLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQKAMARQAEAERERRARITLAEAERQAAEKLREAAEIISEHPM 161 (188)
T ss_dssp HHHHHHHHHHHHHHHTGGGTEEEEEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHhcCeEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhh
Q psy14362 403 ALQLRYLQFQYSKFSA 418 (422)
Q Consensus 403 ~~~lr~lE~~~~~l~~ 418 (422)
++++|+||+|.+.++.
T Consensus 162 ~l~lr~le~~~~ia~~ 177 (188)
T 3bk6_A 162 ALQLRTLQTISDVAGD 177 (188)
T ss_dssp HHHHHHTTC-------
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999999988764
No 2
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A
Probab=99.94 E-value=1.1e-26 Score=201.25 Aligned_cols=131 Identities=69% Similarity=0.988 Sum_probs=108.2
Q ss_pred EEccccceEEEEEeeeEEeecCCCccccCCCceEEEEEEEEEEecchHHHHHhhcChHHHHHHHHHHHHHHHhcccchhH
Q psy14362 239 FILPCMDSYVCVDLRTRTYDVPPQEVLTKDSVTVSVDAVVYYRVSNATISVANVANAHHSTKLLAQTTLRNVMGTRPLHE 318 (422)
Q Consensus 239 ~~~P~i~~v~~v~~r~~~~~~~~~~~~T~D~~~V~V~~~V~yrI~d~~~~~~~~~~~~~~l~~~~~~alR~vv~~~tld~ 318 (422)
++.||++++.++|+|.++++++++.++|+|++.|.|++.++|||.||.+|++++.|++..+...++++||+++|++++++
T Consensus 3 l~~P~id~v~~vd~R~~~~d~~~q~vlT~D~~~v~Vd~~v~yrI~Dp~~~~~~v~~~~~~l~~~~~~~lR~vig~~~lde 82 (133)
T 4fvg_A 3 LGSPSTDSAAKVDMRTISFDIPPQEVLTKDSVTISVDGVVYYRVQNATLAVANITNADSATRLLAQTTLRNALGTKNLSQ 82 (133)
T ss_dssp -----------CCCSCEEEEEEEEEEECTTCCEEEEEEEEEEEESCHHHHHHSSSCHHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred CCCCceeEEEEEEeEEEEecCCCeEEEeCCCCEEEEEEEEEEEEeehHHhHhhhhhHHHHHHHHHHHHHHHHhccccHHH
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHHHHHHHHHhhcCCeEEEEEEeeccCCcHHHHHHHHHHHHH
Q psy14362 319 ILSEREAISNTMQLALDEATEDWGIKVERVEIKDVRLPVQLQRAMAAEAEA 369 (422)
Q Consensus 319 ll~~R~~i~~~i~~~L~~~l~~~GI~V~~V~I~~i~~P~~v~~Ai~~~~~A 369 (422)
++++|++|+.++++.+++.+++|||+|.+|.|++++||+++++||.++++|
T Consensus 83 il~~r~~i~~~i~~~l~~~~~~~GI~V~~V~ikdi~~P~~v~~am~~~~~A 133 (133)
T 4fvg_A 83 ILSDREEIAHHMQSTLDDATDDWGIKVERVEIKDVKLPVQLQRAMAAEAEA 133 (133)
T ss_dssp HHHCHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEECCCC-----------
T ss_pred HHhhHHHHHHHHHHHHHHHHhcCCEEEEEEEEEecCCCHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999877665
No 3
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii}
Probab=99.82 E-value=1.5e-20 Score=157.74 Aligned_cols=110 Identities=45% Similarity=0.703 Sum_probs=106.8
Q ss_pred EEEeeeEEeecCCCccccCCCceEEEEEEEEEEecchHHHHHhhcChHHHHHHHHHHHHHHHhcccchhHHHhhHHHHHH
Q psy14362 249 CVDLRTRTYDVPPQEVLTKDSVTVSVDAVVYYRVSNATISVANVANAHHSTKLLAQTTLRNVMGTRPLHEILSEREAISN 328 (422)
Q Consensus 249 ~v~~r~~~~~~~~~~~~T~D~~~V~V~~~V~yrI~d~~~~~~~~~~~~~~l~~~~~~alR~vv~~~tld~ll~~R~~i~~ 328 (422)
++|+|.++++++++.++|+|+++|+++++++|||.||.++++++.+++..++..+++++|+++|++++++++++|++|+.
T Consensus 4 ~vd~r~~~~~~~~~~v~T~D~~~v~v~~~v~~rI~dp~~~~~~v~~~~~~l~~~~~~~lR~vig~~~l~ei~~~R~~i~~ 83 (113)
T 2rpb_A 4 HVDLREHVIDVPPQEVICKDNVVVTVDAVVYYQVIDPVKAVYNVSDFLMAIVKLAQTNLRAIIGEMELDETLSGRDIINA 83 (113)
T ss_dssp CCCCCCEEEECCCEEEECTTSCEEEECEEEEEEESCTTTCTTTTTHHHHHHHHHHHHHHHHHHTSCCTTHHHHCHHHHHH
T ss_pred EEeeeEEEEecCcceeEeCCCCEEEEEEEEEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCcHHHHHhCHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCeEEEEEEeeccCCcHH
Q psy14362 329 TMQLALDEATEDWGIKVERVEIKDVRLPVQ 358 (422)
Q Consensus 329 ~i~~~L~~~l~~~GI~V~~V~I~~i~~P~~ 358 (422)
.+++.+++.+++|||+|.+|.|++++||++
T Consensus 84 ~i~~~l~~~~~~~Gi~v~~v~I~~i~~p~e 113 (113)
T 2rpb_A 84 RLREELDKITDRWGVKITRVEIQRIDPPKD 113 (113)
T ss_dssp HHHHHHHHHHGGGTEECCCEEECCCBCCCC
T ss_pred HHHHHHHHHHHhcCeEEEEEEEEEecCCCC
Confidence 999999999999999999999999999974
No 4
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1
Probab=99.81 E-value=4.2e-21 Score=168.09 Aligned_cols=128 Identities=16% Similarity=0.216 Sum_probs=115.3
Q ss_pred ccceEEEEEeeeEEeecCCCccccCCCceEEEEEEEEEEec-chHHHHHhhcC--------hHHHHHHHHHHHHHHHhcc
Q psy14362 243 CMDSYVCVDLRTRTYDVPPQEVLTKDSVTVSVDAVVYYRVS-NATISVANVAN--------AHHSTKLLAQTTLRNVMGT 313 (422)
Q Consensus 243 ~i~~v~~v~~r~~~~~~~~~~~~T~D~~~V~V~~~V~yrI~-d~~~~~~~~~~--------~~~~l~~~~~~alR~vv~~ 313 (422)
|++++.++|+|.++++++++.++|+|+.++.|++.++|||. ||..+.+...+ ....+.+.+++.||+++|+
T Consensus 3 ~i~~v~~vdlr~~~ldv~~q~viTkD~v~v~Vdavv~~rI~dd~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~LR~viG~ 82 (143)
T 1win_A 3 SGSSGQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGT 82 (143)
T ss_dssp CCCCCCSCCCSCEEECCCEEEEECSSSCEEEECCEEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEEECceEEEeCCcceeEcCCCCEEEEEEEEEEEECCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhc
Confidence 57889999999999999999999999999999999999998 67765443322 3455788899999999999
Q ss_pred cchhHHHhhHHHHHHHHHHHHHHHhhcCCeEEEEEEeeccCCcHHHHHHHHHHHHHH
Q psy14362 314 RPLHEILSEREAISNTMQLALDEATEDWGIKVERVEIKDVRLPVQLQRAMAAEAEAT 370 (422)
Q Consensus 314 ~tld~ll~~R~~i~~~i~~~L~~~l~~~GI~V~~V~I~~i~~P~~v~~Ai~~~~~Ae 370 (422)
+++++++++|++|...+++.+++.+++|||+|.+|.|+++++|+++++||.+++.||
T Consensus 83 ~tldeils~R~~i~~~v~~~~~~~~~~~Gi~V~~v~IkdI~~p~~~~~am~~~~~Ae 139 (143)
T 1win_A 83 LTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTSG 139 (143)
T ss_dssp SCHHHHHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTCHHHHHCCCCCCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEeecChHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999998776664
No 5
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=99.75 E-value=1.1e-18 Score=159.52 Aligned_cols=95 Identities=29% Similarity=0.311 Sum_probs=92.2
Q ss_pred CchHHhhhhhHHHHHHHHHHhhhhcCCc----ceEEeccCCCcHHHHHHHHHHhhchhhhhhhHHHHhhchHHHHHHHHH
Q psy14362 2 SDSRDDMMETEINNHAIVVTNDVAHNNK----DRQKIFGDQLKVSIMHAGGREFDRGQKIDKRYIFIAAEGEHKASRALR 77 (422)
Q Consensus 2 ~~~~~~l~~r~~i~~~i~~~~~~~~~~w----~~vei~di~~~~~~~~am~~~~~ae~~r~~~a~~~~a~~~~~~~~~~~ 77 (422)
.++|+++++|++|+..|++.+++.+++| .+|+|+||.||+++++||+++|+| ||+++|+++.||||.+|++.++
T Consensus 73 ~~l~ell~~R~~i~~~i~~~l~~~~~~~GI~v~~v~I~~i~~p~ev~~a~~~~~~A--ere~~A~i~~Aege~~a~~~~a 150 (188)
T 3bk6_A 73 AHLDELLSERDKLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQKAMARQAEA--ERERRARITLAEAERQAAEKLR 150 (188)
T ss_dssp SCHHHHHHCHHHHHHHHHHHHHHHTGGGTEEEEEEEEEEEEEETTHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHhhHHHHHHHHHHHHHHHHHhcCeEEEEEEEEecCCCHHHHHHHHHHHHH--HHHHHHHHHHhHHHHHHHHHHH
Confidence 4789999999999999999999999999 999999999999999999999999 7999999999999999999999
Q ss_pred HHHHHhccChhHhhhhhhhcc
Q psy14362 78 EASEVISDSPAALQLRYLQIP 98 (422)
Q Consensus 78 ~a~~~~~~~~~a~~lr~l~~~ 98 (422)
+|++.|+.+|.+|+||||+++
T Consensus 151 ~a~~~~~~~~~~l~lr~le~~ 171 (188)
T 3bk6_A 151 EAAEIISEHPMALQLRTLQTI 171 (188)
T ss_dssp HHHHHHHHCTTHHHHHHTTC-
T ss_pred HHHHHHHhCHHHHHHHHHHHH
Confidence 999999999999999999999
No 6
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1
Probab=98.81 E-value=1.3e-09 Score=94.94 Aligned_cols=53 Identities=9% Similarity=-0.057 Sum_probs=51.3
Q ss_pred CchHHhhhhhHHHHHHHHHHhhhhcCCc----ceEEeccCCCcHHHHHHHHHHhhch
Q psy14362 2 SDSRDDMMETEINNHAIVVTNDVAHNNK----DRQKIFGDQLKVSIMHAGGREFDRG 54 (422)
Q Consensus 2 ~~~~~~l~~r~~i~~~i~~~~~~~~~~w----~~vei~di~~~~~~~~am~~~~~ae 54 (422)
.+||++|++|++|++.|++.+++.+++| .+|+||||.+|+++++||++|+.||
T Consensus 83 ~tldeils~R~~i~~~v~~~~~~~~~~~Gi~V~~v~IkdI~~p~~~~~am~~~~~Ae 139 (143)
T 1win_A 83 LTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTSG 139 (143)
T ss_dssp SCHHHHHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTCHHHHHCCCCCCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEeecChHHHHHHHHHHHhhc
Confidence 3799999999999999999999999999 9999999999999999999999995
No 7
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A
Probab=98.67 E-value=5.5e-09 Score=89.73 Aligned_cols=52 Identities=21% Similarity=0.171 Sum_probs=40.0
Q ss_pred CchHHhhhhhHHHHHHHHHHhhhhcCCc----ceEEeccCCCcHHHHHHHHHHhhc
Q psy14362 2 SDSRDDMMETEINNHAIVVTNDVAHNNK----DRQKIFGDQLKVSIMHAGGREFDR 53 (422)
Q Consensus 2 ~~~~~~l~~r~~i~~~i~~~~~~~~~~w----~~vei~di~~~~~~~~am~~~~~a 53 (422)
..||++|++|++|+.+|++.+++.+++| .+|+||||.||+++++||+++|+|
T Consensus 78 ~~ldeil~~r~~i~~~i~~~l~~~~~~~GI~V~~V~ikdi~~P~~v~~am~~~~~A 133 (133)
T 4fvg_A 78 KNLSQILSDREEIAHHMQSTLDDATDDWGIKVERVEIKDVKLPVQLQRAMAAEAEA 133 (133)
T ss_dssp SCHHHHHHCHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEECCCC-----------
T ss_pred ccHHHHHhhHHHHHHHHHHHHHHHHhcCCEEEEEEEEEecCCCHHHHHHHHHHhcC
Confidence 5799999999999999999999999999 999999999999999999999987
No 8
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=98.04 E-value=0.00016 Score=77.31 Aligned_cols=146 Identities=12% Similarity=0.145 Sum_probs=102.9
Q ss_pred eEEecCCeEEEEEEC--CeeecCcccccceEEEccccceEEEEEee-----------eEEeecCC------CccccCCCc
Q psy14362 210 FKVVQEYERAVIFRL--GRLVSGGAKGPGIFFILPCMDSYVCVDLR-----------TRTYDVPP------QEVLTKDSV 270 (422)
Q Consensus 210 ~~~V~~ge~gVv~~f--Gk~~~~~v~~pGlh~~~P~i~~v~~v~~r-----------~~~~~~~~------~~~~T~D~~ 270 (422)
.|.|+.+.+.-++-+ |+-. -++||-+.+.-|- +.+..+++. ...+.+.+ ..+-|+|..
T Consensus 459 ~~rvphnaaVqvyDy~~~~~R--vvfGP~lv~L~Pd-E~ftvlsLSgg~PK~~~~i~sl~L~lGPdf~tD~i~vET~DhA 535 (861)
T 2zuo_A 459 SYRVPHNAAVQVYDYRAKRAR--VVFGPELVTLDPE-EQFTVLSLSAGRPKRPHARRALCLLLGPDFFTDVITIETADHA 535 (861)
T ss_dssp EEECCTTEEEEEECSSSCCEE--EECSSCEEECCSS-CEECCEEECCSSSCCTTSEEESSEECSSCEEEEEEEEECTTCC
T ss_pred EEEcCCCeEEEEEecCCCceE--EEECCcEEEECCC-ccEEEEEecCCCCCCCCceEEEEeeeCCccceEEEEEEEcCce
Confidence 578999988888865 4333 5799999776663 555555542 11112222 136799999
Q ss_pred eEEEEEEEEEEec--ch---H--HHHHhhcChHHHHHHHHHHHHHHHhcccchhHHHhhHHHHHHH-HHH----------
Q psy14362 271 TVSVDAVVYYRVS--NA---T--ISVANVANAHHSTKLLAQTTLRNVMGTRPLHEILSEREAISNT-MQL---------- 332 (422)
Q Consensus 271 ~V~V~~~V~yrI~--d~---~--~~~~~~~~~~~~l~~~~~~alR~vv~~~tld~ll~~R~~i~~~-i~~---------- 332 (422)
.+.+..++.|+.. |+ . ..+|.+.|+-...-..+-+.+|..+++.++|++..+-..|-.. +.-
T Consensus 536 rL~L~LsYnW~F~~~d~~~~~~~~k~Fsv~DFvGd~Ck~iaSriR~aVA~~~Fd~FHknsa~iir~aVFg~~~~~~~~~~ 615 (861)
T 2zuo_A 536 RLQLQLAYNWHFELKNRNDPAEAAKLFSVPDFVGDACKAIASRVRGAVASVTFDDFHKNSARIIRMAVFGFEMSEDTGPD 615 (861)
T ss_dssp EEEEEEEEEEEECCTTTTCHHHHHGGGSSSSHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSCCC--------
T ss_pred EEEEEEEEEEEEeccCCCChhhhhhhccCCchHHHHHHHHHHHHHHHhhcCcHHHHhhhHHHHHHHhhcCCCcccccccc
Confidence 9999999999883 44 3 3579999999889999999999999999999999875544222 110
Q ss_pred -----HHH--HHhhcCCeEEEEEEeeccCCcHH
Q psy14362 333 -----ALD--EATEDWGIKVERVEIKDVRLPVQ 358 (422)
Q Consensus 333 -----~L~--~~l~~~GI~V~~V~I~~i~~P~~ 358 (422)
... -.+...|+.|++|.|+++.|-++
T Consensus 616 ~~~~~~~~~~~~F~~N~lvitsVDvqsvEpvDq 648 (861)
T 2zuo_A 616 GTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQ 648 (861)
T ss_dssp -----CCCSCEECTTTCEEEEEEEEEEEEESSH
T ss_pred cccccCcccceEEccCCeEEEEEeeeeecccCH
Confidence 000 11334599999999999998654
No 9
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii}
Probab=97.14 E-value=0.00019 Score=59.03 Aligned_cols=41 Identities=12% Similarity=0.025 Sum_probs=38.8
Q ss_pred CchHHhhhhhHHHHHHHHHHhhhhcCCc----ceEEeccCCCcHH
Q psy14362 2 SDSRDDMMETEINNHAIVVTNDVAHNNK----DRQKIFGDQLKVS 42 (422)
Q Consensus 2 ~~~~~~l~~r~~i~~~i~~~~~~~~~~w----~~vei~di~~~~~ 42 (422)
..|++++++|++|++.|++.+++.+++| .+|+|+||.||++
T Consensus 69 ~~l~ei~~~R~~i~~~i~~~l~~~~~~~Gi~v~~v~I~~i~~p~e 113 (113)
T 2rpb_A 69 MELDETLSGRDIINARLREELDKITDRWGVKITRVEIQRIDPPKD 113 (113)
T ss_dssp CCTTHHHHCHHHHHHHHHHHHHHHHGGGTEECCCEEECCCBCCCC
T ss_pred CcHHHHHhCHHHHHHHHHHHHHHHHHhcCeEEEEEEEEEecCCCC
Confidence 4689999999999999999999999999 9999999999974
No 10
>3j20_A 30S ribosomal protein S3AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=29.98 E-value=2.1e+02 Score=25.30 Aligned_cols=81 Identities=10% Similarity=0.122 Sum_probs=56.5
Q ss_pred ccccCCCceEEEEEEEEEEecchHHHHHhhcChHHHHHHHHHHHHHHHhcccchhHHHhh--HHHHHHHHHHHHHHHhhc
Q psy14362 263 EVLTKDSVTVSVDAVVYYRVSNATISVANVANAHHSTKLLAQTTLRNVMGTRPLHEILSE--REAISNTMQLALDEATED 340 (422)
Q Consensus 263 ~~~T~D~~~V~V~~~V~yrI~d~~~~~~~~~~~~~~l~~~~~~alR~vv~~~tld~ll~~--R~~i~~~i~~~L~~~l~~ 340 (422)
.+.|.||..+.+-+...-.- . .-......++....+.+...+++.+++++... -+.++.+|....+...-=
T Consensus 108 dVkT~DGy~lRvf~i~fT~k-r------a~~sQ~~~IRk~m~eii~~~~~~~~l~e~V~~li~~~i~~eI~k~~k~IyPl 180 (198)
T 3j20_A 108 NITTKDGYKLRVMAMAIAMR-R------IQTSQERAIRKIMQEIIYKKAEELNFKDFVLESVNGKIAAEIAKEAKKIYPL 180 (198)
T ss_dssp EEECTTSCEEEEEEEEEECS-S------CCCTHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHSHHHHHHHHHHHHHHSCE
T ss_pred EEEecCCCEEEEEEEEEEec-c------ccchhhhHHHHHHHHHHHHHhccCCHHHHHHHHcCChHHHHHHHhhCccccc
Confidence 47799999988877654322 1 22344567888899999999999999999986 488888888887776322
Q ss_pred CCeEEEEEEe
Q psy14362 341 WGIKVERVEI 350 (422)
Q Consensus 341 ~GI~V~~V~I 350 (422)
.-++|..+.+
T Consensus 181 ~~V~IrKvKv 190 (198)
T 3j20_A 181 RKAEIRKIKV 190 (198)
T ss_dssp EEEEEEEEEE
T ss_pred ceEEEEEEEE
Confidence 2344444433
No 11
>2d7c_C RAB11 family-interacting protein 3; GTP-ASE, coiled-coil, protein transport; HET: GTP MES; 1.75A {Homo sapiens} SCOP: h.1.31.1
Probab=29.83 E-value=34 Score=22.63 Aligned_cols=22 Identities=14% Similarity=0.027 Sum_probs=19.2
Q ss_pred chHHhhhhhHHHHHHHHHHhhh
Q psy14362 3 DSRDDMMETEINNHAIVVTNDV 24 (422)
Q Consensus 3 ~~~~~l~~r~~i~~~i~~~~~~ 24 (422)
+|-+.|.+++++|.+++..||.
T Consensus 5 eL~~~l~~qee~n~~Le~YID~ 26 (42)
T 2d7c_C 5 ELMEAIQKQEEINFRLQDYIDR 26 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5667889999999999999985
No 12
>3e56_A Putative uncharacterized protein; alpha-beta sandwich, interlocked homodimer, ASR1734, unknown; 2.01A {Nostoc punctiforme}
Probab=21.10 E-value=1.4e+02 Score=23.03 Aligned_cols=43 Identities=5% Similarity=-0.049 Sum_probs=33.3
Q ss_pred HHhhhhhHHHHHHHHHHhhhhcCCc--------ceEEeccCCCcHHHHHHH
Q psy14362 5 RDDMMETEINNHAIVVTNDVAHNNK--------DRQKIFGDQLKVSIMHAG 47 (422)
Q Consensus 5 ~~~l~~r~~i~~~i~~~~~~~~~~w--------~~vei~di~~~~~~~~am 47 (422)
..+|++||++-+-+...+.+.++++ .-.||.|..-++.|.+-+
T Consensus 52 ksll~DreQLlqvllDA~teGSDdfLE~LqasVkaqeise~kASPqMRRQL 102 (113)
T 3e56_A 52 KSLLSDREQLLQVLLDALTEGSDDFLETLQASVKAQEVSEFKASPQMRRQL 102 (113)
T ss_dssp GGGSSCHHHHHHHHHHHHHHCCTTTEEEEEEEEEEEEECGGGSCHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 3589999999999999999999998 344666666677665543
Done!