RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14362
(422 letters)
>gnl|CDD|239497 cd03403, Band_7_stomatin_like, Band_7_stomatin_like: A subgroup of
the band 7 domain of flotillin (reggie) like proteins
similar to stomatin and podicin (two lipid
raft-associated integral membrane proteins). Individual
proteins of this band 7 domain family may cluster to
form membrane microdomains which may in turn recruit
multiprotein complexes. Stomatin is widely expressed
and, highly expressed in red blood cells. It localizes
predominantly to the plasma membrane and to
intracellular vesicles of the endocytic pathway, where
it is present in higher order homo-oligomeric complexes
(of between 9 and 12 monomers). Stomatin interacts with
and regulates members of the degenerin/epithelia Na+
channel family in mechanosensory cells of Caenorhabditis
elegans and vertebrate neurons and, is implicated in
trafficking of Glut1 glucose transporters. Prohibitin is
a mitochondrial inner-membrane protein hypothesized to
act as a chaperone for the stabilization of
mitochondrial proteins. Podicin localizes to the plasma
membrane of podocyte foot processes and, is found in
higher order oligomers. Podocin plays a role in
regulating glomerular permeability. Mutations in the
podicin gene give rise to autosomal recessive steroid
resistant nephritic syndrome. This group also contains
proteins similar to three Caenorhabditis elegans
proteins: UNC-1, UNC-24 and, MEC-2. Mutations in the
unc-1 and unc-24 genes result in abnormal motion and
altered patterns of sensitivity to volatile anesthetics.
MEC-2 and UNC-24 proteins interact with MEC-4 which is
part of the degenerin channel complex required for
response to gentle body touch.
Length = 215
Score = 280 bits (718), Expect = 1e-93
Identities = 106/199 (53%), Positives = 140/199 (70%), Gaps = 3/199 (1%)
Query: 213 VQEYERAVIFRLGRLVSGGAKGPGIFFILPCMDSYVC-VDLRTRTYDVPPQEVLTKDSVT 271
V +YER V+ RLG+ GPG+ FI+P +D VDLR + DVPPQEV+TKD+VT
Sbjct: 1 VPQYERGVVERLGKYH--RTLGPGLHFIIPFIDRIAYKVDLREQVLDVPPQEVITKDNVT 58
Query: 272 VSVDAVVYYRVSNATISVANVANAHHSTKLLAQTTLRNVMGTRPLHEILSEREAISNTMQ 331
V VDAV+YYRV + +V V + ++ LAQTTLR+V+G L E+LSERE I+ +
Sbjct: 59 VRVDAVLYYRVVDPVKAVYGVEDYRYAISQLAQTTLRSVIGKMELDELLSEREEINAELV 118
Query: 332 LALDEATEDWGIKVERVEIKDVRLPVQLQRAMAAEAEATREARAKVIAAEGEHKASRALR 391
LDEAT+ WG+KVERVEIKD+ LP ++Q AMA +AEA RE RAK+I AEGE +A+ L
Sbjct: 119 EILDEATDPWGVKVERVEIKDIILPQEIQEAMAKQAEAEREKRAKIIEAEGERQAAILLA 178
Query: 392 EASEVISDSPAALQLRYLQ 410
EA++ + +PAALQLR L+
Sbjct: 179 EAAKQAAINPAALQLRELE 197
Score = 48.7 bits (117), Expect = 1e-06
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 56 KIDKRYIFIAAEGEHKASRALREASEVISDSPAALQLRYLQI 97
+ +KR I AEGE +A+ L EA++ + +PAALQLR L+
Sbjct: 157 EREKRAKIIEAEGERQAAILLAEAAKQAAINPAALQLRELET 198
>gnl|CDD|223407 COG0330, HflC, Membrane protease subunits, stomatin/prohibitin
homologs [Posttranslational modification, protein
turnover, chaperones].
Length = 291
Score = 170 bits (432), Expect = 7e-50
Identities = 91/220 (41%), Positives = 133/220 (60%), Gaps = 11/220 (5%)
Query: 190 MTGLSWFLVGITLPFSLFVCFKVVQEYERAVIFRLGRLVSGGAKGPGIFFILPCM----D 245
+ + ++ + L LF VV+E ER V+ R GR + PG+ F +P +
Sbjct: 1 LLLILIIILLVILIVLLFSSIFVVKEGERGVVLRFGR-YTRTLGEPGLHFKIPFPEAIEE 59
Query: 246 SYVCVDLRTRTYDV-PPQEVLTKDSVTVSVDAVVYYRVSNATISVANVANAHHSTKLLAQ 304
V VDLR RT DV PPQEV+TKD+V VSVDAVV YRV++ +V NV NA + + L Q
Sbjct: 60 VVVRVDLRERTLDVGPPQEVITKDNVIVSVDAVVQYRVTDPQKAVYNVENAEAALRQLVQ 119
Query: 305 TTLRNVMGTRPLHEILSEREA-ISNTMQLALDEATEDWGIKVERVEIKDVRLPVQLQRAM 363
+ LR+V+G L E+L+ER A I+ ++ LDEA + WGIKV VEIKD+ P ++Q AM
Sbjct: 120 SALRSVIGRMTLDELLTERRAEINAKIREILDEAADPWGIKVVDVEIKDIDPPEEVQAAM 179
Query: 364 AAEAEATREARAKVIAAEGEHKASR----ALREASEVISD 399
+ A R+ RA+++ AEGE +A+ EA+ ++++
Sbjct: 180 EKQMAAERDKRAEILEAEGEAQAAILRAEGEAEAAIILAE 219
>gnl|CDD|214581 smart00244, PHB, prohibitin homologues. prohibitin homologues.
Length = 160
Score = 159 bits (404), Expect = 2e-47
Identities = 84/161 (52%), Positives = 111/161 (68%), Gaps = 4/161 (2%)
Query: 209 CFKVVQEYERAVIFRLGRLVSGGAKGPGIFFILPCMDSYVCVDLRTRTYDVPPQEVLTKD 268
KVV E ER V+ RLGR++ GPG+ F++P +D VDLR +T DVPPQE +TKD
Sbjct: 2 AIKVVGEGERGVVERLGRVL--RVLGPGLHFLIPFIDDVKKVDLRAQTDDVPPQETITKD 59
Query: 269 SVTVSVDAVVYYRVSNATISVANVANAH-HSTKLLAQTTLRNVMGTRPLHEILS-EREAI 326
+V VSVDAVVYYRV + +V V +A + LAQTTLR+V+G R L E+L+ +RE I
Sbjct: 60 NVKVSVDAVVYYRVLDPLRAVYRVLDADYAVIEQLAQTTLRSVIGKRTLDELLTDQREKI 119
Query: 327 SNTMQLALDEATEDWGIKVERVEIKDVRLPVQLQRAMAAEA 367
S ++ L+EA E WGIKVE VEIKD+RLP +++ AM A+
Sbjct: 120 SENIREELNEAAEAWGIKVEDVEIKDIRLPEEIKEAMEAQQ 160
>gnl|CDD|216327 pfam01145, Band_7, SPFH domain / Band 7 family. This family has
been called SPFH, Band 7 or PHB domain. Recent
phylogenetic analysis has shown this domain to be a
slipin or Stomatin-like integral membrane domain
conserved from protozoa to mammals.
Length = 177
Score = 133 bits (336), Expect = 3e-37
Identities = 62/178 (34%), Positives = 94/178 (52%), Gaps = 7/178 (3%)
Query: 211 KVVQEYERAVIFRLGRLVSGGAKGPGIFFILPCMDSYVCVDLRTRTYDVPPQ-EVLTKDS 269
+V E V+ R G++ GPG+ F LP + + VD R +T +V VLTKD
Sbjct: 1 TIVPPGEVGVVTRFGKVS--RVLGPGLHFKLPFIQTITVVDTRLQTLEVTVDITVLTKDG 58
Query: 270 VTVSVDAVVYYRVSNATISVANVANAHHSTKLL---AQTTLRNVMGTRPLHEILSEREAI 326
V V+VD V YRV + VAN +LL ++ LR V+ L E+LS RE I
Sbjct: 59 VPVNVDVTVQYRVEDPAKLVANYTGEEDLQELLRPLVRSALREVIARYTLDELLSNREEI 118
Query: 327 SNTMQLALDEATEDWGIKVERVEIKDVRLPVQLQRAMAAEAEATREA-RAKVIAAEGE 383
+ ++ AL E E +G+++E V+I D+ P ++ A+ + A +EA A++ AE E
Sbjct: 119 AQEVKEALQEELEKYGLEIEDVQITDIDPPPEIAEAIEEKQAAEQEAEEAEIERAEAE 176
>gnl|CDD|239024 cd02106, Band_7, The band 7 domain of flotillin (reggie) like
proteins. This group contains proteins similar to
stomatin, prohibitin, flotillin, HlfK/C and podicin.
Many of these band 7 domain-containing proteins are
lipid raft-associated. Individual proteins of this band
7 domain family may cluster to form membrane
microdomains which may in turn recruit multiprotein
complexes. Microdomains formed from flotillin proteins
may in addition be dynamic units with their own
regulatory functions. Flotillins have been implicated
in signal transduction, vesicle trafficking,
cytoskeleton rearrangement and are known to interact
with a variety of proteins. Stomatin interacts with and
regulates members of the degenerin/epithelia Na+ channel
family in mechanosensory cells of Caenorhabditis elegans
and vertebrate neurons and participates in trafficking
of Glut1 glucose transporters. Prohibitin may act as a
chaperone for the stabilization of mitochondrial
proteins. Prokaryotic HflK/C plays a role in the
decision between lysogenic and lytic cycle growth during
lambda phage infection. Flotillins have been implicated
in the progression of prion disease, in the pathogenesis
of neurodegenerative diseases such as Parkinson's and
Alzheimer's disease and, in cancer invasion and
metastasis. Mutations in the podicin gene give rise to
autosomal recessive steroid resistant nephritic
syndrome.
Length = 121
Score = 126 bits (319), Expect = 2e-35
Identities = 53/120 (44%), Positives = 76/120 (63%), Gaps = 2/120 (1%)
Query: 250 VDLRTRTYDVPPQEVLTKDSVTVSVDAVVYYRVSNATISVANVANAHHST--KLLAQTTL 307
+DLR +T DVPPQEVLTKD+V V VDAVV YRV + ++ NV + + LAQ+ L
Sbjct: 2 IDLRRQTLDVPPQEVLTKDNVPVRVDAVVQYRVVDPVKALYNVRDPEDEEALRQLAQSAL 61
Query: 308 RNVMGTRPLHEILSEREAISNTMQLALDEATEDWGIKVERVEIKDVRLPVQLQRAMAAEA 367
R+V+G L E+L +R+ I+ ++ AL E + +GI+V V IKD+ P ++Q AM
Sbjct: 62 RSVIGKMTLDELLEDRDEIAAEVREALQEDLDKYGIEVVDVRIKDIDPPEEVQEAMEDRQ 121
>gnl|CDD|239499 cd03405, Band_7_HflC, Band_7_HflC: The band 7 domain of flotillin
(reggie) like proteins. This group includes proteins
similar to prokaryotic HlfC (High frequency of
lysogenization C). Although many members of the band 7
family are lipid raft associated, prokaryote plasma
membranes lack cholesterol and are unlikely to have
lipid raft domains. Individual proteins of this band 7
domain family may cluster to form membrane microdomains
which may in turn recruit multiprotein complexes.
Escherichia coli HflC is an integral membrane protein
which may localize to the plasma membrane. HflC
associates with another band 7 family member (HflK) to
form an HflKC complex. HflKC interacts with FtsH in a
large complex termed the FtsH holo-enzyme. FtsH is an
AAA ATP-dependent protease which exerts progressive
proteolysis against membrane-embedded and soluble
substrate proteins. HflKC can modulate the activity of
FtsH. HflKC plays a role in the decision between
lysogenic and lytic cycle growth during lambda phage
infection.
Length = 242
Score = 122 bits (309), Expect = 2e-32
Identities = 65/205 (31%), Positives = 99/205 (48%), Gaps = 22/205 (10%)
Query: 210 FKVVQEYERAVIFRLGRLVSGGAKGPGIFFILPCMDSYVCVDLRTRTYDVPPQEVLTKDS 269
+V E E+AV+ R G +V PG+ F LP + D R T D PQ VLTKD
Sbjct: 1 LFIVDEGEQAVVLRFGEVV-RVVTEPGLHFKLPFIQQVKKFDKRILTLDSDPQRVLTKDK 59
Query: 270 VTVSVDAVVYYRVSNAT---ISVANVANAHHSTKLLAQ---TTLRNVMGTRPLHEILS-E 322
+ VDA +R+++ +V A + L Q + LR G R L E++S E
Sbjct: 60 KRLIVDAYAKWRITDPLRFYQAVGGEERAAET--RLDQIVNSALRAEFGKRTLIELVSGE 117
Query: 323 REAISNTMQLALDEATEDWGIKVERVEIKDVRLPVQLQRA----MAAEAEATREARAKVI 378
R + ++ A+ E ++ GI+V V IK + LP ++ + M AE RE A
Sbjct: 118 RGELMEEIRRAVAEEAKELGIEVVDVRIKRIDLPEEVSESVYRRMRAE----RERIAAEF 173
Query: 379 AAEGEHKA----SRALREASEVISD 399
AEGE +A + A RE + ++++
Sbjct: 174 RAEGEEEAERIRADADRERTVILAE 198
>gnl|CDD|239498 cd03404, Band_7_HflK, Band_7_HflK: The band 7 domain of flotillin
(reggie) like proteins. This group includes proteins
similar to prokaryotic HlfK (High frequency of
lysogenization K). Although many members of the band 7
family are lipid raft associated, prokaryote plasma
membranes lack cholesterol and are unlikely to have
lipid raft domains. Individual proteins of this band 7
domain family may cluster to form membrane microdomains
which may in turn recruit multiprotein complexes.
Escherichia coli HflK is an integral membrane protein
which may localize to the plasma membrane. HflK
associates with another band 7 family member (HflC) to
form an HflKC complex. HflKC interacts with FtsH in a
large complex termed the FtsH holo-enzyme. FtsH is an
AAA ATP-dependent protease which exerts progressive
proteolysis against membrane-embedded and soluble
substrate proteins. HflKC can modulate the activity of
FtsH. HflKC plays a role in the decision between
lysogenic and lytic cycle growth during lambda phage
infection.
Length = 266
Score = 88.8 bits (221), Expect = 5e-20
Identities = 62/221 (28%), Positives = 97/221 (43%), Gaps = 39/221 (17%)
Query: 210 FKVVQEYERAVIFRLGRLVSGGAKGPGIFFILPCMDSYVCVDLRTRTYDVPPQE------ 263
F +VQ ER V+ R G+ PG+ + LP V V + V
Sbjct: 15 FYIVQPGERGVVLRFGKYSR--TVEPGLHWKLPYPIEVVEVVPVFQLRSVGIPVRVGSVR 72
Query: 264 -------VLTKDSVTVSVDAVVYYRVSNATISVANVANAHHSTKLLAQTTLRNVMGTRPL 316
+LT D V V+ V YR+S+ + NV + + + A++ +R V+G L
Sbjct: 73 SVPGESLMLTGDENIVDVEFAVQYRISDPYDYLFNVRDPEGTLRQAAESAMREVVGRSTL 132
Query: 317 HEILSE-REAISNT----MQLALDEATEDWGIKVERVEIKDVRLPVQLQRA----MAAEA 367
++L+E RE I+ +Q LD GI++ V ++D P ++Q A A
Sbjct: 133 DDVLTEGREEIAQDVRELLQAILDAY--KAGIEIVGVNLQDADPPEEVQDAFDDVNKARQ 190
Query: 368 EATR---EARA---KVIA-AEGEHKASRALREA----SEVI 397
+ R EA A +V+ A GE A+R ++EA EVI
Sbjct: 191 DRERLINEAEAYANEVVPKARGE--AARIIQEAEAYKEEVI 229
>gnl|CDD|130988 TIGR01933, hflK, HflK protein. HflK and HflC are paralogs encoded
by tandem genes in Proteobacteria, spirochetes, and some
other bacterial lineages. The HflKC complex is anchored
in the membrane and exposed to the periplasm. The
complex is not active as a protease, but rather binds to
and appears to modulate the ATP-dependent protease FtsH.
The overall function of HflKC is not fully
described.//Regulation of FtsH by HflKC appears to be
negative (PMID:8947034,PMID:96367) [SS 8/27/03].
Length = 261
Score = 69.4 bits (170), Expect = 2e-13
Identities = 49/196 (25%), Positives = 81/196 (41%), Gaps = 25/196 (12%)
Query: 210 FKVVQEYERAVIFRLGRLVSGGAKGPGIFFILPCMDSYVCVDLRTRTYDVPPQEV----- 264
+ E ER V+ R G+ PG+ + P ++ Y V V
Sbjct: 1 IYTIGEAERGVVLRFGKYHR--TVDPGLNWKPPFIE---------EVYPVNVTAVRNLRK 49
Query: 265 ----LTKDSVTVSVDAVVYYRVSNATISVANVANAHHSTKLLAQTTLRNVMGTRPLHEIL 320
LT D V+V+ V YR+++ + +V N S + + LR V+G + +IL
Sbjct: 50 QGLMLTGDENIVNVEMNVQYRITDPYKYLFSVENPEDSLRQATDSALRGVIGDSTMDDIL 109
Query: 321 SE-REAISNTMQLALDEATE--DWGIKVERVEIKDVRLPVQLQRAMAAEAEATREARAKV 377
+E R I + L+E + D GI V V + R P +++ A + RE +
Sbjct: 110 TEGRSQIREDTKERLNEIIDNYDLGITVTDVNFQSARPPEEVKEAF-DDVIIAREDEERY 168
Query: 378 IAAEGEHKASRALREA 393
I E E A+ + +A
Sbjct: 169 I-NEAEAYANEVVPKA 183
>gnl|CDD|233644 TIGR01932, hflC, HflC protein. HflK and HflC are paralogs encoded
by tandem genes in Proteobacteria, spirochetes, and some
other bacterial lineages. The HflKC complex is anchored
in the membrane and exposed to the periplasm. The
complex is not active as a protease, but rather binds to
and appears to modulate the ATP-dependent protease FtsH.
The overall function of HflKC is not fully described
[Protein fate, Degradation of proteins, peptides, and
glycopeptides, Regulatory functions, Protein
interactions].
Length = 317
Score = 62.9 bits (153), Expect = 5e-11
Identities = 50/238 (21%), Positives = 95/238 (39%), Gaps = 40/238 (16%)
Query: 196 FLVGITLPFSLFVCFKVVQEYERAVIFRLGRLV-----SGGAKGPGIFFILPCMDSYVCV 250
+V + L LF F +++E ER +I R G+++ PG+ F +P ++
Sbjct: 6 IVVIVLLIVVLFQPFFIIKEGERGIITRFGKILKDNNHHVLVYEPGLHFKIPFIEHVKIF 65
Query: 251 DLRTRTYDVPPQEVLTKDSVTVSVDAVVYYRVSN-----ATISVANVANAHHSTKLLAQT 305
D + +T D P + TK+ + +D + +R+ + + ++ A K
Sbjct: 66 DAKIQTMDGRPDRIPTKEKKDIIIDTYIRWRIEDFKKYYLSTGGGTISAAEVLIKRKIDD 125
Query: 306 TLRNVMGTRPLHEILSE------------------------------REAISNTMQLALD 335
LR+ +G L EI+ RE ++ + +
Sbjct: 126 RLRSEIGVLGLKEIVRSSNDQLDTLVSKLALNRGGKINKIAMTITKGREILAREISQIAN 185
Query: 336 EATEDWGIKVERVEIKDVRLPVQLQRAMAAEAEATREARAKVIAAEGEHKASRALREA 393
+D GI+V V IK + +L ++ + RE A++ ++GE KA L +A
Sbjct: 186 SQLKDIGIEVVDVRIKKINYSDELSESIYNRMRSEREQIARMHRSQGEEKAEEILGKA 243
>gnl|CDD|239501 cd03407, Band_7_4, A subgroup of the band 7 domain of flotillin
(reggie) like proteins. This subgroup contains proteins
similar to stomatin, prohibitin, flotillin, HlfK/C and
podicin. Many of these band 7 domain-containing
proteins are lipid raft-associated. Individual proteins
of this band 7 domain family may cluster to form
membrane microdomains which may in turn recruit
multiprotein complexes. Microdomains formed from
flotillin proteins may in addition be dynamic units with
their own regulatory functions. Flotillins have been
implicated in signal transduction, vesicle trafficking,
cytoskeleton rearrangement and are known to interact
with a variety of proteins. Stomatin interacts with and
regulates members of the degenerin/epithelia Na+ channel
family in mechanosensory cells of Caenorhabditis elegans
and vertebrate neurons and participates in trafficking
of Glut1 glucose transporters. Prohibitin may act as a
chaperone for the stabilization of mitochondrial
proteins. Prokaryotic HflK/C plays a role in the
decision between lysogenic and lytic cycle growth during
lambda phage infection. Flotillins have been implicated
in the progression of prion disease, in the pathogenesis
of neurodegenerative diseases such as Parkinson's and
Alzheimer's disease and, in cancer invasion and
metastasis. Mutations in the podicin gene give rise to
autosomal recessive steroid resistant nephritic
syndrome.
Length = 262
Score = 58.1 bits (141), Expect = 1e-09
Identities = 51/195 (26%), Positives = 85/195 (43%), Gaps = 15/195 (7%)
Query: 219 AVIFRLGRLVSGGAKGPGIFFILPCMDSYV-CVDLRTRTYDVPPQEVLTKDSVTVSVDAV 277
A+I R G+ PG F++P +++ + LR + DV E TKD+V V+V
Sbjct: 5 AIIERFGKFF--KVAWPGCHFVIPLVETVAGRLSLRVQQLDVR-VETKTKDNVFVTVVGQ 61
Query: 278 VYYRVSNATISVA--NVANAHHSTKLLAQTTLRNVMGTRPLHEILSEREAISNTMQLALD 335
+ YRVS + A + N + LR + L E+ +++ I+ ++ L
Sbjct: 62 IQYRVSEENATDAFYKLGNPEEQIQSYVFDVLRARIPKLTLDELFEQKDEIAKAVEEELR 121
Query: 336 EATEDWGIKVERVEIKDVRLPVQLQRAMAAEAEATREARAKVIAAEGEHKASRALREASE 395
EA +G ++ I D+ +++RAM A R+ A V AE E K
Sbjct: 122 EAMSRYGFEIVATLITDIDPDAEVKRAMNEINAAQRQRVAAVHKAEAE-KIKD------- 173
Query: 396 VISDSPAALQLRYLQ 410
I + A + + LQ
Sbjct: 174 -IKAAEADAEAKRLQ 187
>gnl|CDD|239495 cd03401, Band_7_prohibitin, Band_7_prohibitin. A subgroup of the
band 7 domain of flotillin (reggie) like proteins. This
subgroup group includes proteins similar to prohibitin
(a lipid raft-associated integral membrane protein).
Individual proteins of this band 7 domain family may
cluster to form membrane microdomains which may in turn
recruit multiprotein complexes. These microdomains in
addition to being stable scaffolds may also be also
dynamic units with their own regulatory functions.
Prohibitin is a mitochondrial inner-membrane protein
which may act as a chaperone for the stabilization of
mitochondrial proteins. Human prohibitin forms a
heter-oligomeric complex with Bap-37 (prohibitin 2, a
band 7 domain carrying homologue). This complex may
protect non-assembled membrane proteins against
proteolysis by the m-AAA protease. Prohibitin and Bap-37
yeast homologues have been implicated in yeast longevity
and, in the maintenance of mitochondrial morphology.
Length = 196
Score = 56.1 bits (136), Expect = 3e-09
Identities = 49/195 (25%), Positives = 84/195 (43%), Gaps = 33/195 (16%)
Query: 217 ERAVIFRLGRLVSGGAKGPGIFFILPCMDSYVCVDLRTRTYDVPPQEVLT--KDSVTVSV 274
RAV+F G V G G+ F +P + D+R R ++ E T KD V++
Sbjct: 9 HRAVLFNRGGGVKDLVYGEGLHFRIPWFQKPIIFDVRARPRNI---ESTTGSKDLQMVNI 65
Query: 275 DAVVYYRVSNATISVANVANAHHSTKL---------LAQTTLRNVMGTRPLHEILSEREA 325
V +R + + + + + L+ V+ E++++RE
Sbjct: 66 TLRVLFRPD-----ASQLPRIYQNLGEDYDERVLPSIINEVLKAVVAQFTAEELITQREE 120
Query: 326 ISNTMQLALDEATEDWGIKVERVEIKDVRLPVQLQRAMAA------EAE--------ATR 371
+S ++ AL E +D+GI ++ V I + + +A+ A EAE A +
Sbjct: 121 VSALIREALTERAKDFGIILDDVSITHLTFSKEFTKAVEAKQVAQQEAERAKFVVEKAEQ 180
Query: 372 EARAKVIAAEGEHKA 386
E +A VI AEGE +A
Sbjct: 181 EKQAAVIRAEGEAEA 195
>gnl|CDD|239494 cd03400, Band_7_1, A subgroup of the band 7 domain of flotillin
(reggie) like proteins. This subgroup contains proteins
similar to stomatin, prohibitin, flotillin, HlfK/C and
podicin. Many of these band 7 domain-containing
proteins are lipid raft-associated. Individual proteins
of this band 7 domain family may cluster to form
membrane microdomains which may in turn recruit
multiprotein complexes. Microdomains formed from
flotillin proteins may in addition be dynamic units with
their own regulatory functions. Flotillins have been
implicated in signal transduction, vesicle trafficking,
cytoskeleton rearrangement and are known to interact
with a variety of proteins. Stomatin interacts with and
regulates members of the degenerin/epithelia Na+ channel
family in mechanosensory cells of Caenorhabditis elegans
and vertebrate neurons and participates in trafficking
of Glut1 glucose transporters. Prohibitin may act as a
chaperone for the stabilization of mitochondrial
proteins. Prokaryotic HflK/C plays a role in the
decision between lysogenic and lytic cycle growth during
lambda phage infection. Flotillins have been implicated
in the progression of prion disease, in the pathogenesis
of neurodegenerative diseases such as Parkinson's and
Alzheimer's disease and, in cancer invasion and
metastasis. Mutations in the podicin gene give rise to
autosomal recessive steroid resistant nephritic
syndrome.
Length = 124
Score = 47.0 bits (112), Expect = 1e-06
Identities = 24/105 (22%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 263 EVLTKDSVTVSVDAVVYYRVSNATISVANVANAHHSTKLLAQTTL----RNVMGTRPLHE 318
+VL+K+ ++++ D V YR++ + + + + + T R V G +
Sbjct: 15 DVLSKEGLSINADVSVQYRINPNKAAAVHSKLGTDYARKIVRPTFRSLVREVTGRYTAEQ 74
Query: 319 ILS-EREAISNTMQLALDEATEDWGIKVERVEIKDVRLPVQLQRA 362
I S +R+ I + ++ L E G+ +E V +++++LP Q+ A
Sbjct: 75 IYSTKRKEIESAIKKELIEEFVGDGLILEEVLLRNIKLPDQIADA 119
>gnl|CDD|236799 PRK10930, PRK10930, FtsH protease regulator HflK; Provisional.
Length = 419
Score = 48.7 bits (116), Expect = 3e-06
Identities = 52/200 (26%), Positives = 88/200 (44%), Gaps = 11/200 (5%)
Query: 210 FKVVQEYERAVIFRLGRLVSGGAKGPGIFFILPCMDSYVCVDLRTRTYDVPPQEVLTKDS 269
F ++E ER V+ R G+ PG+ + +D V++ +LT D
Sbjct: 97 FYTIKEAERGVVTRFGKF--SHLVEPGLNWKPTFIDEVKPVNVEAVRELAASGVMLTSDE 154
Query: 270 VTVSVDAVVYYRVSNATISVANVANAHHSTKLLAQTTLRNVMGTRPLHEILSE-REAISN 328
V V+ V YRV++ + +V + S + + LR V+G + IL+E R I +
Sbjct: 155 NVVRVEMNVQYRVTDPEKYLFSVTSPDDSLRQATDSALRGVIGKYTMDRILTEGRTVIRS 214
Query: 329 TMQLALDEATE--DWGIKVERVEIKDVRLPVQLQRAMAAEAEATREARAKVIAAEGEHKA 386
Q L+E D GI + V + R P +++ A +A A RE + I E E
Sbjct: 215 DTQRELEETIRPYDMGITLLDVNFQAARPPEEVKAAF-DDAIAARENEQQYI-REAEAYT 272
Query: 387 S----RALREASEVISDSPA 402
+ RA +A ++ ++ A
Sbjct: 273 NEVQPRANGQAQRILEEARA 292
>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 548
Score = 46.0 bits (109), Expect = 3e-05
Identities = 40/223 (17%), Positives = 79/223 (35%), Gaps = 37/223 (16%)
Query: 196 FLVGITLPFSLFVCFKVVQEYERAVIFRLGRLVSGGAKG-------PGIFFILPCMDSYV 248
++ I + F ++ A+I +L S G G ++P +
Sbjct: 20 VILVILVLIFFGKRFYIIARPNEALIRTGSKLGSKDEAGGGQKVVRGGGAIVMPIFQTIE 79
Query: 249 CVDLRTRTYDVPPQEVLTKDSVTVSVDAVVYYRVSNATISVANVA----------NAHHS 298
+ L T +V V TKD + ++V+AV Y ++ + +A A +
Sbjct: 80 RMSLTTIKLEVEIDNVYTKDGMPLNVEAVAYVKIGDTFQDIATAAERFGGKGSREDLEQL 139
Query: 299 TKLLAQTTLRNVMGTRPLHEILSEREAISNTMQLALDEATEDWGIKVERVEIKDVRLPVQ 358
+ + LR V+ + E+ +R + +Q + + G+ ++ + I D+ +
Sbjct: 140 AEDTLEGALRAVLAQMTVEELNEDRLGFAQVVQEVVGDDLSKMGLVLDSLAINDINDTSK 199
Query: 359 --------------------LQRAMAAEAEATREARAKVIAAE 381
LQ A AE EA +E + A
Sbjct: 200 ENQDPNNYLDALGRRRIAQVLQDAEIAENEAEKETEIAIAEAN 242
Score = 38.7 bits (90), Expect = 0.006
Identities = 31/85 (36%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 322 EREAISNTMQLALDEATEDWGIKVERVEIKDVRLPVQLQRAMAAEAEATREARAKVIAAE 381
E E Q AL A E + E+VEI VR A A AE EA A +
Sbjct: 378 ETEEAERAEQAALVAAAEA--AEQEQVEI-AVRAEAAKAEAEAQAAEIKAEAEAIREKGK 434
Query: 382 GEHKASRALREASEVISDSPAALQL 406
E +A RAL EA +V+ D+ AA
Sbjct: 435 AEAEAKRALAEAIQVLGDAAAAELF 459
>gnl|CDD|239493 cd03399, Band_7_flotillin, Band_7_flotillin: a subgroup of the band
7 domain of flotillin (reggie) like proteins. This
subgroup contains proteins similar to stomatin,
prohibitin, flotillin, HlfK/C and podicin. These two
proteins are lipid raft-associated. Individual proteins
of this band 7 domain family may cluster to form
membrane microdomains which may in turn recruit
multiprotein complexes. Microdomains formed from
flotillin proteins may in addition be dynamic units with
their own regulatory functions. Flotillins have been
implicated in signal transduction, vesicle trafficking,
cytoskeleton rearrangement and, interact with a variety
of proteins. Flotillins may play a role in the
progression of prion disease, in the pathogenesis of
neurodegenerative diseases such as Parkinson's and
Alzheimer's disease and, in cancer invasion and
metastasis.
Length = 128
Score = 42.2 bits (100), Expect = 5e-05
Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 9/113 (7%)
Query: 251 DLRTRTYDVPPQEVLTKDSVTVSVDAVVYYRVSNATISVANVA------NAHHSTKLLAQ 304
L + V + V+T+D V V V AV +V ++A A + +L+ +
Sbjct: 3 SLTSMVLRVGSEAVITRDGVRVDVTAVFQVKVGGTEEAIATAAERFLGKSEEEIEELVKE 62
Query: 305 T---TLRNVMGTRPLHEILSEREAISNTMQLALDEATEDWGIKVERVEIKDVR 354
LR V+GT + EI +R+ + +Q + G++++ IKD+
Sbjct: 63 VLEGHLRAVVGTMTVEEIYEDRDKFAEQVQEVVAPDLNKMGLELDSFTIKDIT 115
>gnl|CDD|182913 PRK11029, PRK11029, FtsH protease regulator HflC; Provisional.
Length = 334
Score = 41.6 bits (98), Expect = 5e-04
Identities = 56/250 (22%), Positives = 103/250 (41%), Gaps = 55/250 (22%)
Query: 196 FLVGITLPFSLFVCFKVVQEYERAVIFRLGRLVSGGAK-----GPGIFFILPCMDSYVCV 250
+V + L S+FV V+E ER ++ R G+++ PG+ F +P +++ +
Sbjct: 10 IIVLVVLYMSVFV----VKEGERGIVLRFGKVLRDDDNKPLVYAPGLHFKIPFIETVKML 65
Query: 251 DLRTRTYDVPPQEVLTKDSVTVSVDAVVYYRVSN------AT----ISVANV-ANAHHST 299
D R +T D +TK+ + VD+ + +R+S+ AT IS A V S
Sbjct: 66 DARIQTMDNQADRFVTKEKKDLIVDSYIKWRISDFSRYYLATGGGDISQAEVLLKRKFSD 125
Query: 300 KLLAQ------------------TTLRNVM--GTRPLHEILSEREAISNTMQLALDEATE 339
+L ++ +R+ + G+ + ++ A A E
Sbjct: 126 RLRSEIGRLDVKDIVTDSRGRLTLDVRDALNSGSAGTEDEVATPAADDAIASAAERVEAE 185
Query: 340 DWG--------------IKVERVEIKDVRLPVQLQRAMAAEAEATREARAKVIAAEGEHK 385
G I+V V IK + LP ++ A+ A REA A+ ++G+ +
Sbjct: 186 TKGKVPVINPNSMAALGIEVVDVRIKQINLPTEVSDAIYNRMRAEREAVARRHRSQGQEE 245
Query: 386 ASRALREASE 395
A + LR ++
Sbjct: 246 AEK-LRATAD 254
>gnl|CDD|239496 cd03402, Band_7_2, A subgroup of the band 7 domain of flotillin
(reggie) like proteins. This subgroup contains proteins
similar to stomatin, prohibitin, flotillin, HlfK/C and
podicin. Many of these band 7 domain-containing
proteins are lipid raft-associated. Individual proteins
of this band 7 domain family may cluster to form
membrane microdomains which may in turn recruit
multiprotein complexes. Microdomains formed from
flotillin proteins may in addition be dynamic units with
their own regulatory functions. Flotillins have been
implicated in signal transduction, vesicle trafficking,
cytoskeleton rearrangement and are known to interact
with a variety of proteins. Stomatin interacts with and
regulates members of the degenerin/epithelia Na+ channel
family in mechanosensory cells of Caenorhabditis elegans
and vertebrate neurons and participates in trafficking
of Glut1 glucose transporters. Prohibitin may act as a
chaperone for the stabilization of mitochondrial
proteins. Prokaryotic HflK/C plays a role in the
decision between lysogenic and lytic cycle growth during
lambda phage infection. Flotillins have been implicated
in the progression of prion disease, in the pathogenesis
of neurodegenerative diseases such as Parkinson's and
Alzheimer's disease and, in cancer invasion and
metastasis. Mutations in the podicin gene give rise to
autosomal recessive steroid resistant nephritic
syndrome.
Length = 219
Score = 38.8 bits (91), Expect = 0.002
Identities = 38/177 (21%), Positives = 74/177 (41%), Gaps = 18/177 (10%)
Query: 210 FKVVQEYERAVIFRLGRLVSGGAKGPGIFFILPCMDSYVCVDLRTRTYDVPPQEVLTKDS 269
VV+ + V+ GR + G + G+ ++ P V LR R ++ +V +
Sbjct: 2 LFVVEPNQARVLVLFGRYI-GTIRRTGLRWVNPFSSKKR-VSLRVRNFESEKLKVNDANG 59
Query: 270 VTVSVDAVVYYRVSNATISVANVANAHHSTKLLAQTTLRNVMGTRPLHEILSER------ 323
+ + AV+ +RV + +V NV + + +++ LR+V P + +++
Sbjct: 60 NPIEIAAVIVWRVVDTAKAVFNVDDYEEFVHIQSESALRHVASQYPYDDPVNKETSLRGN 119
Query: 324 -EAISNTMQLALDEATEDWGIKVERVEIKDVRLP-------VQLQRAMAAEAEATRE 372
+ +S+ + L E G++V VE + L LQR A+ A R
Sbjct: 120 SDEVSDELARELQERLAVAGVEV--VEARITHLAYAPEIAQAMLQRQQASAIIAARR 174
>gnl|CDD|236975 PRK11770, PRK11770, hypothetical protein; Provisional.
Length = 135
Score = 33.7 bits (78), Expect = 0.057
Identities = 19/81 (23%), Positives = 25/81 (30%), Gaps = 22/81 (27%)
Query: 133 ICGSLMTGLSWFLVG-------ITLPFSLFVCFK-------PYLNRINKVFSSLFSADNA 178
+ G T L W L G I +PF CFK P+ V D
Sbjct: 11 VLGGFWTALGWLLAGLVSCITIIGIPFG-RACFKIAKLSLWPFGKEAVHV-------DEL 62
Query: 179 DPSDAGICGSLMTGLSWFLVG 199
G L+ + WF+
Sbjct: 63 TKDIGTGAGGLLLNIIWFIFF 83
>gnl|CDD|217511 pfam03358, FMN_red, NADPH-dependent FMN reductase.
Length = 151
Score = 33.7 bits (78), Expect = 0.063
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 11/71 (15%)
Query: 327 SNTMQLA---LDEATEDWGIKVERVEIKDVRLPVQLQRAMAAEA-EATREARAKVIAAEG 382
SNT +LA + E G +VE +++ D+ LP+ + A + +E R K+ AA+G
Sbjct: 14 SNTRKLAEWAAELLEEA-GAEVELIDLADLPLPLYDEDLEACGDPDDVQELREKIAAADG 72
Query: 383 ------EHKAS 387
E+ S
Sbjct: 73 IIIVTPEYNGS 83
>gnl|CDD|150189 pfam09432, THP2, Tho complex subunit THP2. The THO complex plays a
role in coupling transcription elongation to mRNA
export. It is composed of subunits THP2, HPR1, THO2 and
MFT1.
Length = 132
Score = 32.1 bits (73), Expect = 0.17
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 331 QLALDEA--TEDWGIKVERVEIKDVRLPVQLQRAMA---AEAEATREARAKVIAAEGEHK 385
+L++D A E E V + P +LQ + AEA RA+++ E K
Sbjct: 10 RLSVDLAKQLERSDFSSEVVLVNKWGPPPELQAILKQYDAEAPDIEVLRAELLKYLDEIK 69
Query: 386 ASRA 389
RA
Sbjct: 70 MERA 73
>gnl|CDD|235999 PRK07353, PRK07353, F0F1 ATP synthase subunit B'; Validated.
Length = 140
Score = 32.3 bits (74), Expect = 0.18
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 14/111 (12%)
Query: 302 LAQTTLRNVMGTRPLHEILSEREA-ISNTMQLA---LDEATEDWGIKVER---VEIKDVR 354
+ T + N + +P+ +++ ERE I A L EA K+E ++ R
Sbjct: 16 VLLTFILNALFYKPVGKVVEEREDYIRTNRAEAKERLAEAE-----KLEAQYEQQLASAR 70
Query: 355 LPVQLQRAMAAEAEATREARAKVIAAEGEHKASRALREASEVISDSPAALQ 405
Q AEAEA + A + A+ E +AS+ + E+ AAL
Sbjct: 71 KQAQ-AVIAEAEAEADKLAAEALAEAQAEAQASKE-KARREIEQQKQAALA 119
>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein;
Provisional.
Length = 530
Score = 32.2 bits (74), Expect = 0.51
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 310 VMGTRPLHEILSEREAISNTMQLALDEATEDWGIKVERVEIK 351
+MG L E+ ER+ I AL E +E+ G+KV +E+K
Sbjct: 86 IMGHTELWEVKQERDRI-----YALPEMSEEDGMKVADLEVK 122
>gnl|CDD|234634 PRK00103, PRK00103, rRNA large subunit methyltransferase;
Provisional.
Length = 157
Score = 31.2 bits (72), Expect = 0.55
Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 11/66 (16%)
Query: 325 AISNTMQLALDEATEDW------GIKVERVEIKDVRLP--VQLQRAMAAEAEATREA--- 373
A+ L + ++ +K+E +EI D + P ++ A E E A
Sbjct: 7 AVGKLKPKWLKDGIAEYLKRFPRYLKLELIEIPDEKRPKNADAEQIKAKEGERILAALPK 66
Query: 374 RAKVIA 379
A+VIA
Sbjct: 67 GARVIA 72
>gnl|CDD|202427 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain.
Transcription of the anti-viral guanylate-binding
protein (GBP) is induced by interferon-gamma during
macrophage induction. This family contains GBP1 and
GPB2, both GTPases capable of binding GTP, GDP and GMP.
Length = 297
Score = 31.9 bits (73), Expect = 0.62
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 316 LHEILSEREAISNTMQLALDEA-TE-DWGIKVERVEIKDVRLPVQLQRAMAAEAEATREA 373
L E L+ +EA+ + L D+A T + I+ ER + + +L R E E EA
Sbjct: 178 LQEFLNSKEAVEEAI-LQTDQALTAKEKAIEAERAKAEAAEAEQELLREKQKEEEQMMEA 236
Query: 374 RAK 376
+ +
Sbjct: 237 QER 239
>gnl|CDD|218704 pfam05701, DUF827, Plant protein of unknown function (DUF827).
This family consists of several plant proteins of
unknown function. Several sequences in this family are
described as being "myosin heavy chain-like".
Length = 484
Score = 31.5 bits (71), Expect = 1.0
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 10/92 (10%)
Query: 316 LHEILSEREAISNTMQLALDEATEDWGIKVERVEIKDVRLPVQLQRAMAAEAEATREARA 375
L E E E +++++ L+ + K + K V +P++LQ+A + EAE R+
Sbjct: 299 LREKEGEAEEAASSLEAELNRTKSE---KESKAREKMVEIPLKLQQASS-EAEEARKE-- 352
Query: 376 KVIAAEGEHKASRALREASEVISDSPAALQLR 407
AE + R L+E +E + +LR
Sbjct: 353 ----AEAAREELRKLKEEAEQTKAALETAELR 380
>gnl|CDD|216390 pfam01252, Peptidase_A8, Signal peptidase (SPase) II.
Length = 143
Score = 30.1 bits (69), Expect = 1.1
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 184 GICGSLMTGLSWFLVGITLPFSLFVCFKVVQEYERAVIFRLG-RLVSGGA 232
G SL +G WFL I L L + + +++ +R+ + + L+ GGA
Sbjct: 43 GAAFSLFSGQRWFLSLIALLAILALLYYLLRLKKRSRLAAIALGLILGGA 92
Score = 27.4 bits (62), Expect = 7.5
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 132 GICGSLMTGLSWFLVGITLPFSLFVCFKPYLNRINK 167
G SL +G WFL I L L + + YL R+ K
Sbjct: 43 GAAFSLFSGQRWFLSLIALLAILALLY--YLLRLKK 76
>gnl|CDD|239502 cd03408, Band_7_5, A subgroup of the band 7 domain of flotillin
(reggie) like proteins. This subgroup contains proteins
similar to stomatin, prohibitin, flotillin, HlfK/C and
podicin. Many of these band 7 domain-containing
proteins are lipid raft-associated. Individual proteins
of this band 7 domain family may cluster to form
membrane microdomains which may in turn recruit
multiprotein complexes. Microdomains formed from
flotillin proteins may in addition be dynamic units with
their own regulatory functions. Flotillins have been
implicated in signal transduction, vesicle trafficking,
cytoskeleton rearrangement and are known to interact
with a variety of proteins. Stomatin interacts with and
regulates members of the degenerin/epithelia Na+ channel
family in mechanosensory cells of Caenorhabditis elegans
and vertebrate neurons and participates in trafficking
of Glut1 glucose transporters. Prohibitin may act as a
chaperone for the stabilization of mitochondrial
proteins. Prokaryotic HflK/C plays a role in the
decision between lysogenic and lytic cycle growth during
lambda phage infection. Flotillins have been implicated
in the progression of prion disease, in the pathogenesis
of neurodegenerative diseases such as Parkinson's and
Alzheimer's disease and, in cancer invasion and
metastasis. Mutations in the podicin gene give rise to
autosomal recessive steroid resistant nephritic
syndrome.
Length = 207
Score = 30.4 bits (69), Expect = 1.2
Identities = 9/40 (22%), Positives = 22/40 (55%)
Query: 323 REAISNTMQLALDEATEDWGIKVERVEIKDVRLPVQLQRA 362
R+ +S ++ AL +G+++ V I+ + P ++Q+
Sbjct: 163 RDELSKAVREALAPWFASFGLELVSVYIESISYPDEVQKL 202
>gnl|CDD|226400 COG3883, COG3883, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 265
Score = 30.8 bits (70), Expect = 1.3
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 10/83 (12%)
Query: 321 SEREAISNTMQLALDEATEDWGIKVERVEIKDVRLPVQLQRAMAAEAEATREARAKVIAA 380
+E+ A+ LA EA+ E+ +++ + L A AAEA A +EA AK A
Sbjct: 193 AEKNAL--IAALAAKEAS----ALGEKAALEEQK---ALAEAAAAEA-AKQEAAAKAAAQ 242
Query: 381 EGEHKASRALREASEVISDSPAA 403
E + A +++S +A
Sbjct: 243 EQAALQAAATAAQPSAVTESASA 265
>gnl|CDD|144386 pfam00765, Autoind_synth, Autoinducer synthetase.
Length = 182
Score = 30.0 bits (68), Expect = 1.5
Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 24/87 (27%)
Query: 31 RQKIFGDQL--KVSIMHAGGREFDRGQKIDKRYIFIAAEGEHKASRALREASEVISDSPA 88
R+K F D+L V+ + G EFD ++ Y+ +G S
Sbjct: 17 RKKTFKDRLDWDVNCSN--GMEFDEYDNLNTTYLLGIKDGRVVCS--------------- 59
Query: 89 ALQLRYLQI--PGVPKGTFQPYLGRIN 113
+R+++ P + GTF Y I+
Sbjct: 60 ---VRFIETKYPNMITGTFSSYFDDIS 83
>gnl|CDD|227201 COG4864, COG4864, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 328
Score = 30.6 bits (69), Expect = 1.6
Identities = 36/124 (29%), Positives = 57/124 (45%), Gaps = 17/124 (13%)
Query: 289 VANVANAHHSTKLL------AQTTLRNVMGTRPLHEILSEREA---ISNTM--QLALDEA 337
V+ + ++ TK+L ++T L + + EILS A I + +L ++A
Sbjct: 179 VSTIGSSDEHTKVLENPDSISKTVLEKGLDSGTAFEILSIDIADVDIGKNIGAKLQTEQA 238
Query: 338 TEDWGIKVERVEIKDVRLPVQLQRAMAAEAEATREARAKVIAAEGE--HKASRALREASE 395
D I + E + + V L++ M A E E RAKV+ AE E S ALRE +
Sbjct: 239 EADKNIAQAKAE-ERRAMAVALEQEMRARVE---EMRAKVVEAEAEVPLALSEALREGNI 294
Query: 396 VISD 399
+ D
Sbjct: 295 GVMD 298
>gnl|CDD|237462 PRK13665, PRK13665, hypothetical protein; Provisional.
Length = 316
Score = 30.6 bits (70), Expect = 1.6
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 7/39 (17%)
Query: 361 RAMAAEAE-----ATREARAKVIAAEGE--HKASRALRE 392
RAMA E +E RAKV+ AE E + ALR
Sbjct: 254 RAMAVALEQEMKAKVQEMRAKVVEAEAEVPLAMAEALRS 292
>gnl|CDD|219524 pfam07698, 7TM-7TMR_HD, 7TM receptor with intracellular HD
hydrolase. These bacterial 7TM receptor proteins have
an intracellular pfam01966. This entry corresponds to
the 7 helix transmembrane domain. These proteins also
contain an N-terminal extracellular domain.
Length = 189
Score = 29.0 bits (66), Expect = 3.0
Identities = 10/50 (20%), Positives = 18/50 (36%)
Query: 183 AGICGSLMTGLSWFLVGITLPFSLFVCFKVVQEYERAVIFRLGRLVSGGA 232
+ LM G + + L L V + R+ + + G LV+
Sbjct: 87 LALLLGLMFGNNLEFLLYALLGGLVGALSVRRLRSRSQLLQAGLLVALVN 136
>gnl|CDD|235535 PRK05621, PRK05621, F0F1 ATP synthase subunit gamma; Validated.
Length = 284
Score = 29.3 bits (67), Expect = 3.5
Identities = 15/49 (30%), Positives = 18/49 (36%), Gaps = 17/49 (34%)
Query: 158 FKPYLNRINKVFSSLFSADNADP-----------------SDAGICGSL 189
+PY +I KV S L SA D SD G+CG
Sbjct: 42 SRPYAEKIRKVISHLASASEYDHPLLVEREVKRVGYIVVTSDRGLCGGY 90
>gnl|CDD|205692 pfam13514, AAA_27, AAA domain. This domain is found in a number of
double-strand DNA break proteins. This domain contains a
P-loop motif.
Length = 1118
Score = 29.7 bits (67), Expect = 3.8
Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 4/93 (4%)
Query: 303 AQTTLRNVMGTRPLHEILSEREAISNTMQLALDEATEDWGIKVERVEIKDVRLPVQLQRA 362
+ TL G L +++E A+ L E+ +E +E + L ++ A
Sbjct: 873 LERTLVRAGGGLSLEALVAEAAALDPD---ELPARLEELARDIEELEEELNELAQEVGAA 929
Query: 363 MAAEAEATREARAKVIAAEGEHKASRALREASE 395
A + A + AE E + LR+ +E
Sbjct: 930 KQELARMDGGSTAAELEAERESLLA-QLRDLAE 961
>gnl|CDD|221431 pfam12127, YdfA_immunity, SigmaW regulon antibacterial. This
protein is found in bacteria. Proteins in this family
are about 330 amino acids in length. The operon from
which this protein is derived confers immunity for the
host species to a broad range of antibacterial
compounds, unlike the specific immunity proteins that
are linked to and co-regulated with their
antibiotic-synthesis proteins.
Length = 318
Score = 29.2 bits (66), Expect = 4.4
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 7/38 (18%)
Query: 361 RAMAAEAE-----ATREARAKVIAAEGEHKASRALREA 393
RAMA E +E RAKV+ AE E +A+ EA
Sbjct: 250 RAMAVAREQEMKAKVQEMRAKVVEAEAE--VPKAMAEA 285
>gnl|CDD|226711 COG4260, COG4260, Membrane protease subunit, stomatin/prohibitin
family [Amino acid transport and metabolism].
Length = 345
Score = 28.7 bits (64), Expect = 5.5
Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 309 NVMGTRPLHEILSEREAISNTMQLALDEATEDWGIKVERVEIKDVRLPVQLQRAM 363
N G + + + +S M LDE +G+ V+ ++ + P + Q +
Sbjct: 177 NQSGV-RFSFLTANQMELSKYMAEVLDEQWTQYGMAVDSFQVASISYPDESQALI 230
>gnl|CDD|226433 COG3919, COG3919, Predicted ATP-grasp enzyme [General function
prediction only].
Length = 415
Score = 28.7 bits (64), Expect = 5.5
Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 346 ERVEIKDVRLPVQLQRAMAAEAEATREARAKVIAAEGEHKASRALREASEVI 397
+ ++ PV L+ M EARAK A + AL A E I
Sbjct: 139 IDTLVDELTFPVILKPGMGGSV--HFEARAKAFTAADNEEMKLALHRAYEEI 188
>gnl|CDD|173256 PRK14795, PRK14795, lipoprotein signal peptidase; Provisional.
Length = 158
Score = 28.0 bits (63), Expect = 6.4
Identities = 30/93 (32%), Positives = 41/93 (44%), Gaps = 15/93 (16%)
Query: 144 FLVGITLPFSLFVCFKPYLNRINKVFSSLFSADNADPSDAGICGSLMTGLS-WFLVGITL 202
+LV LP V P+L +L+ N GI S+++G+ W LV ITL
Sbjct: 25 YLVEHRLPLGEQVPLLPFL--------ALYRTYNL-----GIAFSMLSGMHGWGLVAITL 71
Query: 203 PFSLFVCFKVVQEYERAVIFRLG-RLVSGGAKG 234
FV + + V RLG L+ GGA G
Sbjct: 72 AVIAFVLWLWWRTAPDRVFARLGFALIIGGAIG 104
>gnl|CDD|215253 PLN02459, PLN02459, probable adenylate kinase.
Length = 261
Score = 28.3 bits (63), Expect = 7.0
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 65 AAEGEHKASRALREASEVISD-SPAA---LQLRYLQIPGVPKGTFQPYLGRINKVP 116
+E + K++ AL + D S A + +L PGV KGT+ L ++ VP
Sbjct: 1 LSERDAKSTSALADDLASACDRSLAKGRNVNWVFLGCPGVGKGTYASRLSKLLGVP 56
>gnl|CDD|240439 PTZ00491, PTZ00491, major vault protein; Provisional.
Length = 850
Score = 28.8 bits (65), Expect = 7.0
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 7/68 (10%)
Query: 343 IKVERVEIKDVRL-----PVQLQRAMAAEAEATREARAKVIAAEGEHKASRALREASEVI 397
K E K + L V+ AEA A EA A++I AE E + + +A +
Sbjct: 692 AKAEEQRTKLLELQAESAAVESSGQSRAEALA--EAEARLIEAEAEVEQAELRAKALRIE 749
Query: 398 SDSPAALQ 405
+++
Sbjct: 750 AEAELEKL 757
>gnl|CDD|169406 PRK08366, vorA, 2-ketoisovalerate ferredoxin oxidoreductase subunit
alpha; Reviewed.
Length = 390
Score = 28.4 bits (63), Expect = 8.1
Identities = 16/57 (28%), Positives = 30/57 (52%)
Query: 365 AEAEATREARAKVIAAEGEHKASRALREASEVISDSPAALQLRYLQFQYSKFSACAG 421
A A A AR +V+AA + + + +E I++ A +Q ++ ++S +AC G
Sbjct: 11 AAAYAALHARVQVVAAYPITPQTSIIEKIAEFIANGEADIQYVPVESEHSAMAACIG 67
>gnl|CDD|182308 PRK10209, PRK10209, acid-resistance membrane protein; Provisional.
Length = 190
Score = 27.6 bits (62), Expect = 8.4
Identities = 35/149 (23%), Positives = 57/149 (38%), Gaps = 42/149 (28%)
Query: 111 RINKVPIFIGLLADNADPSDAGICGSLMTGLSWFLVGITLPFSLFVCFKPYLNRINKVFS 170
+I V +FIG L + P +G S + G+ GI L LF NR + +
Sbjct: 25 QIIAVLLFIGGLLCLSFPFVSGDALSTVVGILLICSGIALIVGLFA------NRSHNFWP 78
Query: 171 SLFSADNADPSDAGICGSLMTGLSWFLVG---ITLP----FSLFVCFKVVQEYERAVIFR 223
L ++ G+++ ++G I P FSL A +F
Sbjct: 79 ML--------------SGILLGVAYLVLGYFFIRNPEVGMFSLAAFI--------AGLFC 116
Query: 224 LG---RLVSG----GAKGPGIFFILPCMD 245
+G RL+SG KG + ++ +D
Sbjct: 117 VGGIIRLMSGYKQRKMKGSWLQIVIGVLD 145
>gnl|CDD|217780 pfam03886, DUF330, Protein of unknown function (DUF330). The
proteins in this family are uncharacterized. The
proteins are 170-190 amino residues in length.
Length = 159
Score = 27.7 bits (62), Expect = 8.5
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 352 DVRLPVQLQRAMAAEA-EATREARAKVIAAEGEHKASRALREASEVISDSPAAL 404
D RL V +QR A A+ +++ A G+ ASR+ R + + D AAL
Sbjct: 90 DYRLQVDVQRFEGDPGGTAVLSAQWRLLDAGGQVLASRSFRISEPLAGDGYAAL 143
>gnl|CDD|148708 pfam07259, ProSAAS, ProSAAS precursor. This family consists of
several mammalian proSAAS precursor proteins. ProSAAS
mRNA is expressed primarily in brain and other
neuroendocrine tissues (pituitary, adrenal, pancreas);
within brain, the mRNA is broadly distributed among
neurons. ProSAAS is thought to be an endogenous
inhibitor of prohormone convertase 1 may function as a
neuropeptide. N-terminal fragments of proSAAS in
intracellular Pick Bodies (PBs) may cause a functional
disturbance of neurons in Pick's disease.
Length = 203
Score = 27.9 bits (61), Expect = 9.3
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 358 QLQRAMAAEAEATREARAKVIAAEGEHKASRALR 391
+ RA+A EA R+ARA AAE E + +R LR
Sbjct: 74 EAARALAHLLEAERQARAAAAAAEAEDQNARVLR 107
>gnl|CDD|180941 PRK07352, PRK07352, F0F1 ATP synthase subunit B; Validated.
Length = 174
Score = 27.6 bits (62), Expect = 9.6
Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 28/93 (30%)
Query: 307 LRNVMGTRPLHEILSER-EAISNTMQLA---LDEATEDWGIKVERVEIKDVRLPVQLQRA 362
R +G +IL ER EAI ++ A L +A + L Q+
Sbjct: 40 GRGFLG-----KILEERREAILQALKEAEERLRQAAQ--------------ALAEAQQKL 80
Query: 363 MAAEAEATR-----EARAKVIAAEGEHKASRAL 390
A+ EA R +ARA+ I AE E +A +
Sbjct: 81 AQAQQEAERIRADAKARAEAIRAEIEKQAIEDM 113
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.135 0.390
Gapped
Lambda K H
0.267 0.0747 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,468,158
Number of extensions: 2127517
Number of successful extensions: 2290
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2241
Number of HSP's successfully gapped: 75
Length of query: 422
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 323
Effective length of database: 6,546,556
Effective search space: 2114537588
Effective search space used: 2114537588
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.9 bits)