RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14362
(422 letters)
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH,
membrane fusion, trafficking, transmembrane, membrane
protein; 3.20A {Pyrococcus horikoshii}
Length = 188
Score = 295 bits (757), Expect = e-100
Identities = 88/166 (53%), Positives = 118/166 (71%)
Query: 245 DSYVCVDLRTRTYDVPPQEVLTKDSVTVSVDAVVYYRVSNATISVANVANAHHSTKLLAQ 304
+ V VDLRT+ DVP QE +TKD+V V V+AVVY+RV + +V V N +T ++Q
Sbjct: 4 EKAVIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRVVDPVKAVTQVKNYIMATSQISQ 63
Query: 305 TTLRNVMGTRPLHEILSEREAISNTMQLALDEATEDWGIKVERVEIKDVRLPVQLQRAMA 364
TTLR+V+G L E+LSER+ ++ +Q +DEAT+ WGIKV VEIKDV LP +Q+AMA
Sbjct: 64 TTLRSVIGQAHLDELLSERDKLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQKAMA 123
Query: 365 AEAEATREARAKVIAAEGEHKASRALREASEVISDSPAALQLRYLQ 410
+AEA RE RA++ AE E +A+ LREA+E+IS+ P ALQLR LQ
Sbjct: 124 RQAEAERERRARITLAEAERQAAEKLREAAEIISEHPMALQLRTLQ 169
Score = 62.2 bits (152), Expect = 1e-11
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 58 DKRYIFIAAEGEHKASRALREASEVISDSPAALQLRYLQI 97
++R AE E +A+ LREA+E+IS+ P ALQLR LQ
Sbjct: 131 ERRARITLAEAERQAAEKLREAAEIISEHPMALQLRTLQT 170
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane
protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A
Length = 133
Score = 226 bits (579), Expect = 5e-74
Identities = 91/131 (69%), Positives = 110/131 (83%)
Query: 239 FILPCMDSYVCVDLRTRTYDVPPQEVLTKDSVTVSVDAVVYYRVSNATISVANVANAHHS 298
P DS VD+RT ++D+PPQEVLTKDSVT+SVD VVYYRV NAT++VAN+ NA +
Sbjct: 3 LGSPSTDSAAKVDMRTISFDIPPQEVLTKDSVTISVDGVVYYRVQNATLAVANITNADSA 62
Query: 299 TKLLAQTTLRNVMGTRPLHEILSEREAISNTMQLALDEATEDWGIKVERVEIKDVRLPVQ 358
T+LLAQTTLRN +GT+ L +ILS+RE I++ MQ LD+AT+DWGIKVERVEIKDV+LPVQ
Sbjct: 63 TRLLAQTTLRNALGTKNLSQILSDREEIAHHMQSTLDDATDDWGIKVERVEIKDVKLPVQ 122
Query: 359 LQRAMAAEAEA 369
LQRAMAAEAEA
Sbjct: 123 LQRAMAAEAEA 133
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus
horikoshii}
Length = 113
Score = 160 bits (407), Expect = 1e-48
Identities = 50/107 (46%), Positives = 71/107 (66%)
Query: 250 VDLRTRTYDVPPQEVLTKDSVTVSVDAVVYYRVSNATISVANVANAHHSTKLLAQTTLRN 309
VDLR DVPPQEV+ KD+V V+VDAVVYY+V + +V NV++ + LAQT LR
Sbjct: 5 VDLREHVIDVPPQEVICKDNVVVTVDAVVYYQVIDPVKAVYNVSDFLMAIVKLAQTNLRA 64
Query: 310 VMGTRPLHEILSEREAISNTMQLALDEATEDWGIKVERVEIKDVRLP 356
++G L E LS R+ I+ ++ LD+ T+ WG+K+ RVEI+ + P
Sbjct: 65 IIGEMELDETLSGRDIINARLREELDKITDRWGVKITRVEIQRIDPP 111
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, cell adhesion; NMR
{Mus musculus} SCOP: d.43.2.1
Length = 143
Score = 130 bits (328), Expect = 1e-36
Identities = 21/133 (15%), Positives = 49/133 (36%), Gaps = 9/133 (6%)
Query: 250 VDLRTRTYDVPPQEVLTKDSVTVSVDAVVYYRVSNATISVANVA---------NAHHSTK 300
+ L T ++V T + V ++V V ++ +A + +
Sbjct: 10 ISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVL 69
Query: 301 LLAQTTLRNVMGTRPLHEILSEREAISNTMQLALDEATEDWGIKVERVEIKDVRLPVQLQ 360
+ LR+++GT + +I +R+ + ++ GI++ IKDV V
Sbjct: 70 QTLEGHLRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYL 129
Query: 361 RAMAAEAEATREA 373
++ + +
Sbjct: 130 SSLGKTQTSGPSS 142
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 54.7 bits (131), Expect = 4e-08
Identities = 59/313 (18%), Positives = 93/313 (29%), Gaps = 97/313 (30%)
Query: 60 RYIF-IAAEGEHKASRALREASEVISDS-------PAALQLRYLQIPGVPKGTFQPYLGR 111
+F I ++A ++ DS P+ + L I + + Q Y+ +
Sbjct: 301 TVLFFIGVRC-YEAYPNTSLPPSILEDSLENNEGVPSPM----LSISNLTQEQVQDYVNK 355
Query: 112 INK-VP----IFIGLLADNADPSDAGICG---SLMTGLSWFLVGITLPFSLFVCFKPYLN 163
N +P + I L+ N + + G SL GL+ L P L P+
Sbjct: 356 TNSHLPAGKQVEISLV--NG-AKNLVVSGPPQSLY-GLNLTLRKAKAPSGLDQSRIPFSE 411
Query: 164 RINK-VFSSLFSADNADPSDAGICGSLMTGLSWFLVGITLPF-SLFVCFKVVQEY-ERAV 220
R K FS+ F P + PF S A
Sbjct: 412 R--KLKFSNRF-----LP-------------------VASPFHS---------HLLVPAS 436
Query: 221 IFRLGRLVSGGAKGPGIFFILPCMDSYVCVDLRTRTYDVPPQEVLTKDSVTVSVDAVVYY 280
LV +P D++ DLR + + + VD ++
Sbjct: 437 DLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISER----------IVDCIIRL 486
Query: 281 RV--SNATISVANVANAHH-------STKLLAQTTLRNVMGTRPLHEILSEREAISNTMQ 331
V T A H L T RN GT R ++ T+
Sbjct: 487 PVKWETTT-----QFKATHILDFGPGGASGLGVLTHRNKDGT-------GVRVIVAGTLD 534
Query: 332 LALDEATEDWGIK 344
+ D +D+G K
Sbjct: 535 INPD---DDYGFK 544
Score = 48.9 bits (116), Expect = 3e-06
Identities = 64/438 (14%), Positives = 132/438 (30%), Gaps = 127/438 (28%)
Query: 72 ASRALR------EASEVISDS--PAALQLR--YLQIPGVPKGTF----QP-----YLGRI 112
++R L E ++ + A QL+ + +I P F +P +G+
Sbjct: 5 STRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK- 63
Query: 113 NKVPIFIGLLADNADPSDAG-ICGSLMTGL----SWFLVG--I-TLPFSLFVCFKPYLNR 164
F+G ++ +PS G L L + +L G I L L L +
Sbjct: 64 -----FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVK 118
Query: 165 INKVFSSLFSADNA--DPSDAGICGSLMTGLSWFLVGITLPFSLF-------VCFKVVQE 215
++ + +A P D +L + G ++F F+ +++
Sbjct: 119 TKELIKNYITARIMAKRPFDKKSNSALFRAVG---EGNAQLVAIFGGQGNTDDYFEELRD 175
Query: 216 -YE------RAVIFR----LGRLVSGGAKGPGIFFILPCMDSYVCVDLR---TRTYDVPP 261
Y+ +I L L+ +F + ++ + P
Sbjct: 176 LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF-------TQGL-NILEWLENPSNTPD 227
Query: 262 QEVLTKDSVTVS------VDAVVYY---------------RVSNATISVANVANAHHSTK 300
++ L S+ +S + Y + AT + A
Sbjct: 228 KDYL--LSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTA----V 281
Query: 301 LLAQTT-----LRNV---------MGTRPLHEILSEREAISNTMQLALDEATEDWGIKVE 346
+A+T +V +G R + ++ ++ E + + V
Sbjct: 282 AIAETDSWESFFVSVRKAITVLFFIGVR------CYEAYPNTSLPPSILEDSLENNEGVP 335
Query: 347 R--VEIKDVRLPVQLQRAMAAEAEATREARAKVIAAEGEHKASRALREASEVISDSPAAL 404
+ I ++ Q+Q + + I+ ++ L V+S P +L
Sbjct: 336 SPMLSISNLTQE-QVQDYVNKTNSHLPAGKQVEISL---VNGAKNL-----VVSGPPQSL 386
Query: 405 QLRYLQFQYSKFSACAGK 422
L K A +G
Sbjct: 387 YG--LNLTLRKAKAPSGL 402
Score = 48.1 bits (114), Expect = 5e-06
Identities = 61/344 (17%), Positives = 101/344 (29%), Gaps = 133/344 (38%)
Query: 32 QKIFGDQLKVSIMHAGGREFDRGQKIDKRYIFIAAE----GEHKASRALREASEVISD-- 85
I + +H GG +G++I + Y + E G+ K + +E +E +
Sbjct: 1662 LDIVINNPVNLTIHFGGE---KGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYT 1718
Query: 86 --SPAALQLRYLQIPGVPKGTFQPYLGRINKVPIFIGLLADNADPSDAGICG-SLMTGLS 142
S L L Q T QP L + K F L + P+DA G SL G
Sbjct: 1719 FRSEKGL-LSATQF------T-QPALTLMEKA-AFEDLKSKGLIPADATFAGHSL--G-- 1765
Query: 143 WFLVGITLPFSLFVCFKPYLNRINKVFSSLFSADNADPSDAGICGSLMTGLSWFLVGITL 202
Y ++L S A + +
Sbjct: 1766 -----------------EY--------AALASL-------ADV----------------M 1777
Query: 203 PFSLFVCFKVVQEYERAVIFRLGRL----VSGGAKGPGIFFILPCMDSYVCVDLRTRTYD 258
V +VV + R G V G + ++ V
Sbjct: 1778 SIESLV--EVV--FYR------GMTMQVAVPRDELGRSNYGMIAINPGRVAASF------ 1821
Query: 259 VPPQEVLTKDSVTVSVDAVVYYRVSNATISVANVANAHHSTKLLAQTTLRNVMGTRPLHE 318
QE ++ VV RV T + + N + NV
Sbjct: 1822 --SQE---------ALQYVV-ERVGKRTGWLVEIVN-Y------------NVEN------ 1850
Query: 319 ILSEREAISNTMQLALDEATE--DWGIKVERVEIKDVRLPVQLQ 360
++ + ++ ALD T ++ IK+++ I + L L
Sbjct: 1851 ---QQYVAAGDLR-ALDTVTNVLNF-IKLQK--IDIIELQKSLS 1887
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 48.7 bits (115), Expect = 3e-06
Identities = 76/450 (16%), Positives = 132/450 (29%), Gaps = 118/450 (26%)
Query: 9 METEINNHAIVVTNDVAHNNKDRQKIFGDQLKVSIMHAGGREFDRGQKIDK-RYIFIAAE 67
M+ E T + + KD +F D FD D + I E
Sbjct: 7 MDFE--------TGEHQYQYKDILSVFEDAFV--------DNFDCKDVQDMPKSILSKEE 50
Query: 68 GEHKASRALREASEVISDSPAALQLRYLQIPGVPKGTFQPYLGRINKVPIFIG-LLADNA 126
+H +I A L + K V F+ +L N
Sbjct: 51 IDH-----------IIMSKDAVSGTLRLFWTLLSKQE--------EMVQKFVEEVLRINY 91
Query: 127 DPSDAGICGSLMTGLSWFLVGITLPFSLFVCFKPYLNRINKVFSSLF------------S 174
LM+ + ++ +++ + L N+VF+ +
Sbjct: 92 K--------FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA 143
Query: 175 ADNADPSDA-GICGSLMTGL--SWFLVGITLPFSLFVC--FKVVQEYERAVIF--RLGRL 227
P+ I G + G +W + L VC +KV + + IF L
Sbjct: 144 LLELRPAKNVLIDG--VLGSGKTW-VA-------LDVCLSYKVQCKMDFK-IFWLNLKNC 192
Query: 228 VSGGAKGPGIFFILPCMDSYVCVDLRTRTYDVPPQEVLTKDSVTVSVDAVVYYRV-SNAT 286
S + +L + + + +R+ D L S+ + ++ + N
Sbjct: 193 NSPET----VLEMLQKLLYQIDPNWTSRS-DHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 287 ISVANVANAHH------STKLLAQTTLRN------VMGTRPLHEILSEREAISNTMQLAL 334
+ + NV NA S K+L TT R + H L M L
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILL-TT-RFKQVTDFLSAATTTHISLDHHS-----MTLTP 300
Query: 335 DEATEDWGIKVERVEIKDVRLPVQLQRAMAAEAEATREARAKVIAAEGEHKASR------ 388
DE + +K +D LP E T R +IA +
Sbjct: 301 DE-VKSLLLKYLDCRPQD--LP--------REVLTTNPRRLSIIAESIRDGLATWDNWKH 349
Query: 389 -ALREASEVISDSPAALQLRYLQFQYSKFS 417
+ + +I S L+ + + + S
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 32.8 bits (74), Expect = 0.14
Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
Query: 18 IVVTNDVAHNNKDRQKIFGDQLKVS----IMHAGGREFDRGQKIDKRYIFIAAE 67
+ + + + K+ D+ KV I+ G E ++ K+++ IA E
Sbjct: 118 MAIQVNYSSEVKENSVDSDDKAKVPPLIRIV--SGLELSDTKQKGKKFLVIAYE 169
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 32.1 bits (72), Expect = 0.25
Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 6/43 (13%)
Query: 363 MAAEAEATR---EARAKVIAA--EGEHKASRALRE-ASEVISD 399
+ E E+ R E + K + + RE A + + +
Sbjct: 80 LTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEE 122
>1kzf_A Acyl-homoserinelactone synthase ESAI; alpha-beta, autoinducer
synthase, quorum sensing, bacterial pathogenesis,
ligase; 1.80A {Pantoea stewartii subsp} SCOP: d.108.1.3
PDB: 1k4j_A
Length = 230
Score = 30.4 bits (68), Expect = 0.93
Identities = 18/66 (27%), Positives = 28/66 (42%)
Query: 8 MMETEINNHAIVVTNDVAHNNKDRQKIFGDQLKVSIMHAGGREFDRGQKIDKRYIFIAAE 67
M+E ++ + T K R+K F D+L ++ + G E D RYI E
Sbjct: 21 MLELFDVSYEELQTTRSEELYKLRKKTFSDRLGWEVICSQGMESDEFDGPGTRYILGICE 80
Query: 68 GEHKAS 73
G+ S
Sbjct: 81 GQLVCS 86
>1mki_A Probable glutaminase YBGJ; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG, hydrolase; HET: SEP; 2.00A {Bacillus
subtilis} SCOP: e.3.1.2 PDB: 2osu_A* 3brm_A* 3agf_A
Length = 330
Score = 30.0 bits (67), Expect = 1.3
Identities = 9/49 (18%), Positives = 15/49 (30%), Gaps = 1/49 (2%)
Query: 114 KVPIFIGLLADNADPSDAGICGSLMTGLSWFLVGITLPFSLFVCFKPYL 162
+ +I L + S GIC G + F++ K
Sbjct: 36 QSANYIPALG-KVNDSQLGICVLEPDGTMIHAGDWNVSFTMQSISKVIS 83
>2pby_A Glutaminase; secsg, riken, structural genomics, PSI, protein
structure initiative, riken structural
genomics/proteomics initiative, RSGI; 2.07A {Geobacillus
kaustophilus}
Length = 308
Score = 30.0 bits (67), Expect = 1.5
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Query: 114 KVPIFIGLLADNADPSDAGICGSLMTGLSWFLVGITLPFSLFVCFKPYL 162
KV +I L A+P++ I +T+ +L K
Sbjct: 24 KVADYIPALG-KANPNELSIAIYTPDDEVVSAGDVTVKVTLQSISKIIA 71
>3agd_A Salt-tolerant glutaminase; glutaminase super family, hydrolase;
2.20A {Micrococcus luteus} PDB: 3age_A* 3if5_A 3ih8_A
3ih9_A 3iha_A* 3ihb_A 2dfw_A
Length = 456
Score = 29.8 bits (66), Expect = 1.8
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 114 KVPIFIGLLADNADPSDAGICGSLMTGLSWFLVGITLPFSLFVCFKPYL 162
+ +I +LA ADP GI + TG + F++ KP+
Sbjct: 23 ETAQYIPVLA-EADPDRFGIALATPTGRLHCAGDADVEFTIQSASKPFT 70
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase,
flavodoxin, oligomerization, flavoprotein,
oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} PDB:
1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Length = 174
Score = 29.2 bits (66), Expect = 1.8
Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 4/62 (6%)
Query: 321 SEREAISNTMQLALDEATEDWGIKVERVEIKDVRLPVQLQRAMAAEAEATREARAKVIAA 380
+ R+ T A + +++ + LPV A +E +E + +V A
Sbjct: 9 TPRKH-GRTRIAA-SYIAA--LYHTDLIDLSEFVLPVFNGEAEQSELLKVQELKQRVTKA 64
Query: 381 EG 382
+
Sbjct: 65 DA 66
>1u60_A Probable glutaminase YBAS; structural genomics, APC5046, PSI,
protein structure initiat midwest center for structural
genomics, MCSG; 1.61A {Escherichia coli} SCOP: e.3.1.2
Length = 310
Score = 29.6 bits (66), Expect = 2.2
Identities = 9/49 (18%), Positives = 14/49 (28%), Gaps = 1/49 (2%)
Query: 114 KVPIFIGLLADNADPSDAGICGSLMTGLSWFLVGITLPFSLFVCFKPYL 162
+ +I LA N A + G + F+L K
Sbjct: 25 QNADYIPFLA-NVPGQLAAVAIVTCDGNVYSAGDSDYRFALESISKVCT 72
>3qg2_A Bifunctional dihydrofolate reductase-thymidylate; pyrimethamine,
antifolate resistance, oxidoreductase, transferase; HET:
CP6 NDP UMP; 2.30A {Plasmodium falciparum} PDB: 3jsu_A*
3qgt_A*
Length = 608
Score = 29.1 bits (65), Expect = 3.2
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 158 FKPYLNRINKVFSSLFSADNADPSDAGICGSLMTGL 193
FKP NRIN + S ++ D I + +
Sbjct: 116 FKPLSNRINVILSRTLKKEDF-DEDVYIINKVEDLI 150
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Length = 540
Score = 29.2 bits (65), Expect = 3.3
Identities = 8/79 (10%), Positives = 30/79 (37%)
Query: 3 DSRDDMMETEINNHAIVVTNDVAHNNKDRQKIFGDQLKVSIMHAGGREFDRGQKIDKRYI 62
+S + + ++ D AHN + K F ++ ++ +E + +++++
Sbjct: 162 NSVFCNKDDCLKLEDYLIVIDEAHNLLEADKWFTRKISRKMLERALKEIEIVERLNRIDA 221
Query: 63 FIAAEGEHKASRALREASE 81
+ + + + +
Sbjct: 222 KKVKDYINLLIDYMSKLIK 240
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding
protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A
{Neurospora crassa} PDB: 2xdy_A
Length = 388
Score = 28.6 bits (63), Expect = 3.8
Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 12/98 (12%)
Query: 210 FKVVQEYERAVIFRLGRLVSGGAKGPGIFFILPCMDSYVCVDLRTRTYDVPPQEVLTKDS 269
F++V + E ++ +LV K P I I+ + Y V E+ D
Sbjct: 251 FQMVIKDELPLVRAACKLVYPAGKLPRITLIV------SVKGSGSAHYTVLVDEIFRADY 304
Query: 270 VTVSVDAV------VYYRVSNATISVANVANAHHSTKL 301
+ D + + Y AT +V+ A+++ +
Sbjct: 305 GNKAADTLEQLTHDMCYLFGRATKAVSICPPAYYADLV 342
>2r5r_A UPF0343 protein NE1163; APC86493, DUF198, structural genomics,
PSI-2, protein structure initiative; 3.05A {Nitrosomonas
europaea atcc 19718}
Length = 271
Score = 28.0 bits (62), Expect = 6.2
Identities = 20/106 (18%), Positives = 30/106 (28%), Gaps = 14/106 (13%)
Query: 327 SNTMQLALDEATED-------WGIKVERVEIKDVRLPVQLQRAMAAEAEATREARAKV-- 377
SN M +D D I ++RV IK +R PV + + V
Sbjct: 1 SNAMNKQIDLPIADVQGSLDTRHIAIDRVGIKAIRHPVVVADKGGGSQHTVAQFNMYVNL 60
Query: 378 -IAAEGEH--KASRALREASEVISDSPAALQLRYLQFQYSKFSACA 420
+G H + L I S + + S
Sbjct: 61 PHNFKGTHMSRFVEILNSHEREI--SVESFEEILRSMVSRLESDSG 104
>3hj3_A Chain A, crystal structure of DHFR; TS, enzyme, crossover,
non-active site, oxidoreductase; HET: UMP CB3 MTX NDP;
2.70A {Cryptosporidium hominis} PDB: 1qzf_A* 1sej_A*
3dl5_A* 3dl6_A* 2oip_A*
Length = 521
Score = 28.2 bits (63), Expect = 6.7
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 158 FKPYLNRINKVFSSLFSADNADPSDAGICGSL 189
+P NRI V SS D ADP + + +L
Sbjct: 64 RRPLKNRIIVVISSSLPQDEADP-NVVVFRNL 94
>3voy_A Glutaminase kidney isoform, mitochondrial; hydrolase; 2.20A {Homo
sapiens} PDB: 3czd_A 3voz_A* 3vp0_A* 3vp1_A* 3vp2_A
3vp3_A 3vp4_A
Length = 315
Score = 28.0 bits (62), Expect = 6.8
Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 10/68 (14%)
Query: 104 TFQPYLGRI---------NKVPIFIGLLADNADPSDAGICGSLMTGLSWFLVGITLPFSL 154
+F ++ + KV +I LA P G+ + G +PF L
Sbjct: 8 SFTSHIDELYESAKKQSGGKVADYIPQLA-KFSPDLWGVSVCTVDGQRHSTGDTKVPFCL 66
Query: 155 FVCFKPYL 162
C KP
Sbjct: 67 QSCVKPLK 74
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 28.2 bits (62), Expect = 7.1
Identities = 17/82 (20%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 322 EREAISNTMQLALDEATEDWGIKVERVEIKDVRLPVQLQRAMAAEAEATREARAKVIAAE 381
E+EA + + + +E + E +E++ + + V+ AEAE+ EA I E
Sbjct: 681 EQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAAR--IEGE 738
Query: 382 GEHKASRALREASEVISDSPAA 403
G ++ +A + +++
Sbjct: 739 GSVLQAKLKAQALAIETEAELE 760
>1nnf_A Iron-utilization periplasmic protein; iron-binding protein,
EDTA-Fe-protein complex, metal binding protein; HET:
EDT; 1.10A {Haemophilus influenzae} SCOP: c.94.1.1 PDB:
1mrp_A 1d9v_A 3od7_A 3odb_A 1qvs_A 2o6a_A 2o68_A 3kn8_A
3kn7_A 2o69_A 1qw0_A 1o7t_A* 1xc1_A* 1r1n_A* 1d9y_A
Length = 309
Score = 27.3 bits (61), Expect = 8.7
Identities = 8/44 (18%), Positives = 14/44 (31%), Gaps = 4/44 (9%)
Query: 328 NTMQLALDEATEDWGIKVERVEIKDVRLPVQLQRAMAAEAEATR 371
++ GIKV K +L + + E + T
Sbjct: 11 EAATAVAKAFEQETGIKVTLNSGKSEQL---AGQ-LKEEGDKTP 50
>4fak_A Ribosomal RNA large subunit methyltransferase H; alpha/beta
methyltransferase rossmann fold, rRNA methylation rRNA,
ribosomal protein; HET: SAM PG4; 1.70A {Staphylococcus
aureus} PDB: 1vh0_A
Length = 163
Score = 26.7 bits (60), Expect = 8.9
Identities = 10/58 (17%), Positives = 25/58 (43%), Gaps = 10/58 (17%)
Query: 343 IKVERVEIKDVRLP-----VQLQRAMAAEAEATREA---RAKVIA--AEGEHKASRAL 390
K++ +E+ D + P ++++ E + ++ VI +G+ +S L
Sbjct: 35 TKIDIIEVPDEKAPENMSDKEIEQVKEKEGQRILAKIKPQSTVITLEIQGKMLSSEGL 92
>1ne7_A Glucosamine-6-phosphate isomerase; V-type like allosteric enzyme,
conformational disorder, conformational differences,
hydrolase; HET: GLC 16G AGP; 1.75A {Homo sapiens} SCOP:
c.124.1.1
Length = 289
Score = 27.4 bits (61), Expect = 8.9
Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 4/36 (11%)
Query: 60 RYIFIAAEGEHKASRALREASE--VISDSPA-ALQL 92
R + I G HKA AL +A E V A Q
Sbjct: 197 REVMILITGAHKA-FALYKAIEEGVNHMWTVSAFQQ 231
>3hn6_A Glucosamine-6-phosphate deaminase; niaid, ssgcid, decode, UW, SBRI,
infectious disease, LYME DI non-hodgkin lymphomas,
neuroborreliosis; 2.20A {Borrelia burgdorferi}
Length = 289
Score = 27.4 bits (61), Expect = 9.4
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 60 RYIFIAAEGEHKASRALREASE--VISDSPA-ALQL 92
+ + I G +KA RAL+ A E V ALQL
Sbjct: 218 QEVLIIVNGHNKA-RALKHAIEKGVNHMWTISALQL 252
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.390
Gapped
Lambda K H
0.267 0.0818 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,402,623
Number of extensions: 393195
Number of successful extensions: 914
Number of sequences better than 10.0: 1
Number of HSP's gapped: 911
Number of HSP's successfully gapped: 34
Length of query: 422
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 326
Effective length of database: 4,021,377
Effective search space: 1310968902
Effective search space used: 1310968902
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.3 bits)