RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14362
         (422 letters)



>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 143

 Score =  118 bits (297), Expect = 8e-33
 Identities = 22/133 (16%), Positives = 50/133 (37%), Gaps = 9/133 (6%)

Query: 250 VDLRTRTYDVPPQEVLTKDSVTVSVDAVVYYRVSNATISVAN---------VANAHHSTK 300
           + L   T     ++V T + V ++V  V   ++      +A          V +  +   
Sbjct: 10  ISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVL 69

Query: 301 LLAQTTLRNVMGTRPLHEILSEREAISNTMQLALDEATEDWGIKVERVEIKDVRLPVQLQ 360
              +  LR+++GT  + +I  +R+  +  ++          GI++    IKDV   V   
Sbjct: 70  QTLEGHLRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYL 129

Query: 361 RAMAAEAEATREA 373
            ++     +   +
Sbjct: 130 SSLGKTQTSGPSS 142


>d1kzfa_ d.108.1.3 (A:) Acyl-homoserinelactone synthase EsaI
          {Pantoea stewartii subsp. stewartii [TaxId: 66271]}
          Length = 210

 Score = 31.2 bits (70), Expect = 0.19
 Identities = 18/66 (27%), Positives = 28/66 (42%)

Query: 8  MMETEINNHAIVVTNDVAHNNKDRQKIFGDQLKVSIMHAGGREFDRGQKIDKRYIFIAAE 67
          M+E    ++  + T       K R+K F D+L   ++ + G E D       RYI    E
Sbjct: 1  MLELFDVSYEELQTTRSEELYKLRKKTFSDRLGWEVICSQGMESDEFDGPGTRYILGICE 60

Query: 68 GEHKAS 73
          G+   S
Sbjct: 61 GQLVCS 66


>d1gpja1 a.151.1.1 (A:303-404) Glutamyl tRNA-reductase dimerization
           domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}
          Length = 102

 Score = 25.2 bits (55), Expect = 7.6
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 372 EARAKVIAAEGEHKASRALREASEV 396
            +    +  E    ASRALR ASE+
Sbjct: 76  TSAIMELPDEYRRAASRALRRASEL 100


>d1vhoa1 b.49.3.1 (A:70-152) Putative endoglucanase TM1048
           {Thermotoga maritima [TaxId: 2336]}
          Length = 83

 Score = 24.6 bits (54), Expect = 8.3
 Identities = 8/41 (19%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 306 TLRNVMGTRPLH-EILSEREAISNTMQLALDEATEDWGIKV 345
             R V+G    H +    R+ +    ++ +D +  + G++V
Sbjct: 38  IERGVIGMLAPHLQDSESRKKVPTYDEIFVDLSLCERGVRV 78


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.135    0.390 

Gapped
Lambda     K      H
   0.267   0.0562    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,487,442
Number of extensions: 68019
Number of successful extensions: 165
Number of sequences better than 10.0: 1
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 9
Length of query: 422
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 334
Effective length of database: 1,199,356
Effective search space: 400584904
Effective search space used: 400584904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.0 bits)