Query psy14368
Match_columns 128
No_of_seqs 104 out of 1049
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 18:04:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14368.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14368hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5022 Myosin heavy chain [Cy 100.0 3E-36 6.4E-41 269.5 6.4 108 4-113 421-529 (1463)
2 PTZ00014 myosin-A; Provisional 100.0 1.2E-35 2.5E-40 260.2 7.3 106 7-114 458-563 (821)
3 cd01383 MYSc_type_VIII Myosin 100.0 2.2E-35 4.7E-40 254.7 7.6 103 9-113 363-465 (677)
4 cd01387 MYSc_type_XV Myosin mo 100.0 2.6E-35 5.7E-40 254.3 7.7 107 6-114 356-462 (677)
5 cd01381 MYSc_type_VII Myosin m 100.0 4.3E-35 9.3E-40 252.7 8.1 106 8-115 359-464 (671)
6 cd01382 MYSc_type_VI Myosin mo 100.0 5E-35 1.1E-39 253.8 7.5 106 7-114 393-498 (717)
7 cd01384 MYSc_type_XI Myosin mo 100.0 5.5E-35 1.2E-39 252.1 7.6 105 8-114 364-468 (674)
8 cd01379 MYSc_type_III Myosin m 100.0 6.5E-35 1.4E-39 250.9 7.0 104 9-114 371-474 (653)
9 cd01378 MYSc_type_I Myosin mot 100.0 9.3E-35 2E-39 250.8 7.4 106 7-114 362-469 (674)
10 cd01385 MYSc_type_IX Myosin mo 100.0 8.7E-35 1.9E-39 251.5 7.2 105 9-115 374-479 (692)
11 cd01377 MYSc_type_II Myosin mo 100.0 2.3E-34 5E-39 249.0 8.0 105 8-114 371-476 (693)
12 cd01380 MYSc_type_V Myosin mot 100.0 3.7E-34 8E-39 247.6 7.3 105 8-115 365-469 (691)
13 smart00242 MYSc Myosin. Large 100.0 1.6E-33 3.6E-38 243.2 7.4 105 8-114 366-470 (677)
14 cd00124 MYSc Myosin motor doma 100.0 3.8E-33 8.3E-38 241.0 7.2 107 7-115 358-464 (679)
15 cd01386 MYSc_type_XVIII Myosin 100.0 2.5E-32 5.4E-37 238.2 7.3 105 9-115 371-496 (767)
16 PF00063 Myosin_head: Myosin h 100.0 7.5E-32 1.6E-36 232.9 6.0 105 8-114 361-466 (689)
17 KOG0164|consensus 100.0 2.6E-31 5.6E-36 226.3 5.7 106 6-113 370-476 (1001)
18 KOG0161|consensus 100.0 3.2E-31 7E-36 244.3 6.3 106 6-114 443-549 (1930)
19 KOG0163|consensus 100.0 5E-29 1.1E-33 213.4 6.2 110 9-120 449-558 (1259)
20 KOG0162|consensus 100.0 4.5E-29 9.7E-34 213.1 4.2 105 5-111 377-486 (1106)
21 KOG0160|consensus 99.9 4E-27 8.6E-32 205.6 5.9 103 10-115 367-469 (862)
22 KOG4229|consensus 99.9 6.8E-25 1.5E-29 195.2 3.6 109 10-120 426-534 (1062)
23 PF11791 Aconitase_B_N: Aconit 23.8 53 0.0011 24.1 1.6 48 56-105 6-57 (154)
No 1
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=100.00 E-value=3e-36 Score=269.48 Aligned_cols=108 Identities=41% Similarity=0.635 Sum_probs=102.0
Q ss_pred cCCCCCCCcceeeecceeeecccCCCchhhhHhhhhhhhhhhhhhhhhhhhhhhhhhhcCcceeeeeeCCcHHHHHHHhc
Q psy14368 4 VRATEQDTNVTRRDTQELKHEYYYVTSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG 83 (128)
Q Consensus 4 ~~~~~~~~~~~i~di~~lfE~f~~~NsfeQlciN~anEkLq~~~~~~if~~e~eey~~Egi~~~~i~~~dn~~~ldLi~~ 83 (128)
+.|+..+..+|||||+| ||+|+ .|||||||||||||||||+|++++|+.||++|.+|||+|.+|+|.||++|+|||++
T Consensus 421 ~~~~~~~~fIGVLDIyG-FEiFE-kNSFEQlCINYtNEKLQQ~Fn~h~FklEQEeY~kE~IeW~~Idy~DnQ~~IDLIE~ 498 (1463)
T COG5022 421 DHSAAASNFIGVLDIYG-FEIFE-KNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFIDYFDNQPCIDLIEK 498 (1463)
T ss_pred cCccccccceeEEeecc-hhhhc-cCcHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCcchhHHHhc
Confidence 34555788999999999 99999 99999999999999999999999999999999999999999999999999999996
Q ss_pred -CCCcccccchhhhhcCCCCchhHHHHhhhh
Q psy14368 84 -KPNGLLCVLDDQAKRGNATLRYENMKLYID 113 (128)
Q Consensus 84 -~p~Gll~lLDeec~~p~~td~~~~~kl~~~ 113 (128)
.|.|||++|||||..|.++|++|..||...
T Consensus 499 ~~p~GIlslLDEE~~~p~atd~s~~sKL~~~ 529 (1463)
T COG5022 499 KNPLGILSLLDEECVMPHATDESFTSKLAQR 529 (1463)
T ss_pred cCCCchHhhhcHHhcCCCCCchHHHHHHHHH
Confidence 378999999999999999999999999763
No 2
>PTZ00014 myosin-A; Provisional
Probab=100.00 E-value=1.2e-35 Score=260.23 Aligned_cols=106 Identities=27% Similarity=0.295 Sum_probs=101.4
Q ss_pred CCCCCcceeeecceeeecccCCCchhhhHhhhhhhhhhhhhhhhhhhhhhhhhhhcCcceeeeeeCCcHHHHHHHhcCCC
Q psy14368 7 TEQDTNVTRRDTQELKHEYYYVTSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPN 86 (128)
Q Consensus 7 ~~~~~~~~i~di~~lfE~f~~~NsfeQlciN~anEkLq~~~~~~if~~e~eey~~Egi~~~~i~~~dn~~~ldLi~~~p~ 86 (128)
......+||||||| ||+|+ .|||||||||||||+||++|++++|..++++|.+|||+|..++|.||++|+|||++||.
T Consensus 458 ~~~~~~IGiLDI~G-FE~f~-~NSfEQLcINy~NEkLQq~F~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~idLie~k~~ 535 (821)
T PTZ00014 458 GGFKVFIGMLDIFG-FEVFK-NNSLEQLFINITNEMLQKNFVDIVFERESKLYKDEGISTEELEYTSNESVIDLLCGKGK 535 (821)
T ss_pred cccCceEEEEeccc-ccccC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCcHHHHHHHhcCCc
Confidence 34567899999999 99999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhhhcCCCCchhHHHHhhhhh
Q psy14368 87 GLLCVLDDQAKRGNATLRYENMKLYIDT 114 (128)
Q Consensus 87 Gll~lLDeec~~p~~td~~~~~kl~~~~ 114 (128)
|||++|||||++|++||++|++||+...
T Consensus 536 GIl~lLDEec~~p~~tD~~f~~kl~~~~ 563 (821)
T PTZ00014 536 SVLSILEDQCLAPGGTDEKFVSSCNTNL 563 (821)
T ss_pred cHHHHHHHHhCCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999999998654
No 3
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=100.00 E-value=2.2e-35 Score=254.71 Aligned_cols=103 Identities=45% Similarity=0.688 Sum_probs=99.9
Q ss_pred CCCcceeeecceeeecccCCCchhhhHhhhhhhhhhhhhhhhhhhhhhhhhhhcCcceeeeeeCCcHHHHHHHhcCCCcc
Q psy14368 9 QDTNVTRRDTQELKHEYYYVTSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGL 88 (128)
Q Consensus 9 ~~~~~~i~di~~lfE~f~~~NsfeQlciN~anEkLq~~~~~~if~~e~eey~~Egi~~~~i~~~dn~~~ldLi~~~p~Gl 88 (128)
....+||||||| ||+|+ .|||||||||||||+||++|++++|..++++|.+|||+|..++|.||++|+|||+++|.||
T Consensus 363 ~~~~IgiLDI~G-FE~f~-~NsfEQLcINyaNEkLQ~~f~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~ldLie~kp~Gi 440 (677)
T cd01383 363 TGRSISILDIYG-FESFD-KNSFEQFCINYANERLQQHFNRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGL 440 (677)
T ss_pred ccceEEEeeccc-cccCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccH
Confidence 467899999999 99999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhhcCCCCchhHHHHhhhh
Q psy14368 89 LCVLDDQAKRGNATLRYENMKLYID 113 (128)
Q Consensus 89 l~lLDeec~~p~~td~~~~~kl~~~ 113 (128)
|++|||||++|++||++|++|+...
T Consensus 441 l~lLdee~~~p~~tD~~f~~kl~~~ 465 (677)
T cd01383 441 LSLLDEESTFPNATDLTFANKLKQH 465 (677)
T ss_pred HHHhHHHHcCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999764
No 4
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=100.00 E-value=2.6e-35 Score=254.27 Aligned_cols=107 Identities=42% Similarity=0.581 Sum_probs=102.1
Q ss_pred CCCCCCcceeeecceeeecccCCCchhhhHhhhhhhhhhhhhhhhhhhhhhhhhhhcCcceeeeeeCCcHHHHHHHhcCC
Q psy14368 6 ATEQDTNVTRRDTQELKHEYYYVTSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKP 85 (128)
Q Consensus 6 ~~~~~~~~~i~di~~lfE~f~~~NsfeQlciN~anEkLq~~~~~~if~~e~eey~~Egi~~~~i~~~dn~~~ldLi~~~p 85 (128)
|+.....+||||||| ||+|+ .|||||||||||||+||++|++++|..++++|.+|||+|..++|.||++|+|||+++|
T Consensus 356 ~~~~~~~IgILDIfG-FE~f~-~NsfEQLcINyaNEkLQ~~f~~~vF~~eq~eY~~EgI~~~~i~f~dN~~~ldLi~~kp 433 (677)
T cd01387 356 PTQDTLSIAILDIYG-FEDLS-FNSFEQLCINYANENLQYLFNKIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKP 433 (677)
T ss_pred CCCCCceEEEEecCc-cccCC-CCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCcCChHHHHHHHhcCC
Confidence 455667899999999 99999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccchhhhhcCCCCchhHHHHhhhhh
Q psy14368 86 NGLLCVLDDQAKRGNATLRYENMKLYIDT 114 (128)
Q Consensus 86 ~Gll~lLDeec~~p~~td~~~~~kl~~~~ 114 (128)
.|||++|||||++|+++|++|++|+...+
T Consensus 434 ~Gil~lLdee~~~p~~td~~~~~kl~~~~ 462 (677)
T cd01387 434 YGILRILDDQCCFPQATDHTFLQKCHYHH 462 (677)
T ss_pred CchHHHHHHHhcCCCCchHHHHHHHHHhc
Confidence 99999999999999999999999997643
No 5
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=100.00 E-value=4.3e-35 Score=252.73 Aligned_cols=106 Identities=41% Similarity=0.616 Sum_probs=101.5
Q ss_pred CCCCcceeeecceeeecccCCCchhhhHhhhhhhhhhhhhhhhhhhhhhhhhhhcCcceeeeeeCCcHHHHHHHhcCCCc
Q psy14368 8 EQDTNVTRRDTQELKHEYYYVTSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNG 87 (128)
Q Consensus 8 ~~~~~~~i~di~~lfE~f~~~NsfeQlciN~anEkLq~~~~~~if~~e~eey~~Egi~~~~i~~~dn~~~ldLi~~~p~G 87 (128)
.....+||||||| ||+|+ .|||||||||||||+||++|++++|..++++|.+|||.|..++|.||++|+|||+++|.|
T Consensus 359 ~~~~~IgiLDIfG-FE~f~-~NsfEQLcINy~NEkLQ~~f~~~vf~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~kp~G 436 (671)
T cd01381 359 QSRNSIGVLDIFG-FENFD-VNSFEQLCINFANENLQQFFVQHIFKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLN 436 (671)
T ss_pred cccceEEEEecCC-cccCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccCccCcHHHHHHHhcCCCC
Confidence 4567899999999 99999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhhcCCCCchhHHHHhhhhhh
Q psy14368 88 LLCVLDDQAKRGNATLRYENMKLYIDTE 115 (128)
Q Consensus 88 ll~lLDeec~~p~~td~~~~~kl~~~~~ 115 (128)
||++|||||++|+++|++|++|+....+
T Consensus 437 il~lLDee~~~p~~td~~f~~kl~~~~~ 464 (671)
T cd01381 437 IMSLIDEESKFPKGTDQTMLEKLHSQHG 464 (671)
T ss_pred cceechHhhcCCCCCHHHHHHHHHHHhc
Confidence 9999999999999999999999987543
No 6
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=100.00 E-value=5e-35 Score=253.79 Aligned_cols=106 Identities=30% Similarity=0.504 Sum_probs=101.4
Q ss_pred CCCCCcceeeecceeeecccCCCchhhhHhhhhhhhhhhhhhhhhhhhhhhhhhhcCcceeeeeeCCcHHHHHHHhcCCC
Q psy14368 7 TEQDTNVTRRDTQELKHEYYYVTSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPN 86 (128)
Q Consensus 7 ~~~~~~~~i~di~~lfE~f~~~NsfeQlciN~anEkLq~~~~~~if~~e~eey~~Egi~~~~i~~~dn~~~ldLi~~~p~ 86 (128)
......+||||||| ||+|+ .|||||||||||||+||++|++++|..++++|.+|||+|..++|.||++|+|||++||.
T Consensus 393 ~~~~~~IgiLDIfG-FE~f~-~NsfEQLcINyaNEkLQ~~f~~~if~~Eq~~Y~~EgI~~~~i~~~DN~~~ldLie~k~~ 470 (717)
T cd01382 393 ETSSNFIGVLDIAG-FEYFE-HNSFEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLN 470 (717)
T ss_pred CCCCcEEEEEeccc-cccCC-CCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccHHHHHHHhcCCc
Confidence 34567899999999 99999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhhhcCCCCchhHHHHhhhhh
Q psy14368 87 GLLCVLDDQAKRGNATLRYENMKLYIDT 114 (128)
Q Consensus 87 Gll~lLDeec~~p~~td~~~~~kl~~~~ 114 (128)
|||++|||||++|++||++|++||....
T Consensus 471 Gil~lLDee~~~p~~tD~~f~~kl~~~~ 498 (717)
T cd01382 471 GILDILDEENRLPQPSDQHFTSVVHQKH 498 (717)
T ss_pred cHHHHhHHHhcCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999999998754
No 7
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=100.00 E-value=5.5e-35 Score=252.13 Aligned_cols=105 Identities=42% Similarity=0.620 Sum_probs=101.1
Q ss_pred CCCCcceeeecceeeecccCCCchhhhHhhhhhhhhhhhhhhhhhhhhhhhhhhcCcceeeeeeCCcHHHHHHHhcCCCc
Q psy14368 8 EQDTNVTRRDTQELKHEYYYVTSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNG 87 (128)
Q Consensus 8 ~~~~~~~i~di~~lfE~f~~~NsfeQlciN~anEkLq~~~~~~if~~e~eey~~Egi~~~~i~~~dn~~~ldLi~~~p~G 87 (128)
.....+||||||| ||+|+ .|||||||||||||+||++|++++|+.++++|.+|||+|..++|.||++|+|||+++|.|
T Consensus 364 ~~~~~IgiLDI~G-FE~f~-~NsfEQLcINyaNEkLQ~~f~~~if~~eq~eY~~EgI~~~~i~~~DN~~~ldLie~~~~G 441 (674)
T cd01384 364 DSKSLIGVLDIYG-FESFK-TNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGG 441 (674)
T ss_pred CCCeEEEEEeccc-ccccC-cCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccCCChHHHHHHHhcCCcc
Confidence 4567899999999 99999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhhcCCCCchhHHHHhhhhh
Q psy14368 88 LLCVLDDQAKRGNATLRYENMKLYIDT 114 (128)
Q Consensus 88 ll~lLDeec~~p~~td~~~~~kl~~~~ 114 (128)
||++|||||++|++||++|++||....
T Consensus 442 il~lLdee~~~p~~td~~f~~kl~~~~ 468 (674)
T cd01384 442 IIALLDEACMFPKSTHETFAQKLYQTF 468 (674)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHh
Confidence 999999999999999999999998754
No 8
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=100.00 E-value=6.5e-35 Score=250.94 Aligned_cols=104 Identities=41% Similarity=0.599 Sum_probs=100.1
Q ss_pred CCCcceeeecceeeecccCCCchhhhHhhhhhhhhhhhhhhhhhhhhhhhhhhcCcceeeeeeCCcHHHHHHHhcCCCcc
Q psy14368 9 QDTNVTRRDTQELKHEYYYVTSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGL 88 (128)
Q Consensus 9 ~~~~~~i~di~~lfE~f~~~NsfeQlciN~anEkLq~~~~~~if~~e~eey~~Egi~~~~i~~~dn~~~ldLi~~~p~Gl 88 (128)
....+|||||+| ||+|+ .||||||||||||||||++|++++|..++++|.+|||+|..++|.||++|+|||++||.||
T Consensus 371 ~~~~IgiLDI~G-FE~f~-~NsfEQLcINyaNEkLQ~~f~~~vf~~Eq~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gi 448 (653)
T cd01379 371 DQLNVGILDIFG-FENFK-KNSFEQLCINIANEQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGL 448 (653)
T ss_pred ccceEEEEeccc-cccCC-CCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHhHccCCCcH
Confidence 356899999999 99999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhhcCCCCchhHHHHhhhhh
Q psy14368 89 LCVLDDQAKRGNATLRYENMKLYIDT 114 (128)
Q Consensus 89 l~lLDeec~~p~~td~~~~~kl~~~~ 114 (128)
|++|||||++|++||++|++|+....
T Consensus 449 l~lLdee~~~~~~td~~~~~kl~~~~ 474 (653)
T cd01379 449 LALLDEESRFPQATDQTLVEKFEDNL 474 (653)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhc
Confidence 99999999999999999999997654
No 9
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=100.00 E-value=9.3e-35 Score=250.81 Aligned_cols=106 Identities=35% Similarity=0.545 Sum_probs=101.8
Q ss_pred CCCCCcceeeecceeeecccCCCchhhhHhhhhhhhhhhhhhhhhhhhhhhhhhhcCcceeeeeeCCcHHHHHHHhc-CC
Q psy14368 7 TEQDTNVTRRDTQELKHEYYYVTSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KP 85 (128)
Q Consensus 7 ~~~~~~~~i~di~~lfE~f~~~NsfeQlciN~anEkLq~~~~~~if~~e~eey~~Egi~~~~i~~~dn~~~ldLi~~-~p 85 (128)
......+||||||| ||+|+ .|||||||||||||+||++|++++|..++++|.+|||+|..++|.||++|+|||++ +|
T Consensus 362 ~~~~~~IgILDIfG-FE~f~-~NsfEQLcINyaNEkLQ~~f~~~~F~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~ 439 (674)
T cd01378 362 PGKNKVIGVLDIYG-FEIFQ-KNSFEQFCINYVNEKLQQIFIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRP 439 (674)
T ss_pred ccCcceEEEEeccc-ccccc-cccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCcCChHHHHHHHhcCCC
Confidence 45677899999999 99999 99999999999999999999999999999999999999999999999999999999 89
Q ss_pred CcccccchhhhhcC-CCCchhHHHHhhhhh
Q psy14368 86 NGLLCVLDDQAKRG-NATLRYENMKLYIDT 114 (128)
Q Consensus 86 ~Gll~lLDeec~~p-~~td~~~~~kl~~~~ 114 (128)
.|||++|||||++| +++|++|++|+....
T Consensus 440 ~Gil~lLdee~~~p~~~tD~~~~~kl~~~~ 469 (674)
T cd01378 440 PGIFSILDDVCATPHEGTDQTFLEKLNKKF 469 (674)
T ss_pred cchHHHHHHHHcCCCCCChHHHHHHHHHHh
Confidence 99999999999999 999999999998754
No 10
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=100.00 E-value=8.7e-35 Score=251.54 Aligned_cols=105 Identities=46% Similarity=0.748 Sum_probs=100.6
Q ss_pred CCCcceeeecceeeecccCC-CchhhhHhhhhhhhhhhhhhhhhhhhhhhhhhhcCcceeeeeeCCcHHHHHHHhcCCCc
Q psy14368 9 QDTNVTRRDTQELKHEYYYV-TSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNG 87 (128)
Q Consensus 9 ~~~~~~i~di~~lfE~f~~~-NsfeQlciN~anEkLq~~~~~~if~~e~eey~~Egi~~~~i~~~dn~~~ldLi~~~p~G 87 (128)
....+||||||| ||+|+ . |||||||||||||+||++|++++|..++++|.+|||.|..++|.||++|+|||++||.|
T Consensus 374 ~~~~IgiLDI~G-FE~f~-~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~G 451 (692)
T cd01385 374 SGLSIGVLDIFG-FEDFG-RCNSFEQLCINYANEQLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTG 451 (692)
T ss_pred cceEEEEEecCc-cccCC-CCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCcc
Confidence 356799999999 99999 8 99999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhhcCCCCchhHHHHhhhhhh
Q psy14368 88 LLCVLDDQAKRGNATLRYENMKLYIDTE 115 (128)
Q Consensus 88 ll~lLDeec~~p~~td~~~~~kl~~~~~ 115 (128)
||++|||||++|++||++|++|+....+
T Consensus 452 il~lLdee~~~p~~td~~~l~kl~~~~~ 479 (692)
T cd01385 452 LLYLLDEESNFPHATSQTLLAKFNQQHK 479 (692)
T ss_pred HHHHhHHHhcCCCCCHHHHHHHHHHHhC
Confidence 9999999999999999999999987543
No 11
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=100.00 E-value=2.3e-34 Score=248.96 Aligned_cols=105 Identities=40% Similarity=0.634 Sum_probs=100.7
Q ss_pred CCCCcceeeecceeeecccCCCchhhhHhhhhhhhhhhhhhhhhhhhhhhhhhhcCcceeeeee-CCcHHHHHHHhcCCC
Q psy14368 8 EQDTNVTRRDTQELKHEYYYVTSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPN 86 (128)
Q Consensus 8 ~~~~~~~i~di~~lfE~f~~~NsfeQlciN~anEkLq~~~~~~if~~e~eey~~Egi~~~~i~~-~dn~~~ldLi~~~p~ 86 (128)
.....+||||||| ||+|+ .|||||||||||||+||++|++++|+.++++|.+|||.|+.++| .||++|+|||+++|.
T Consensus 371 ~~~~~IgiLDIfG-FE~f~-~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~~~~dn~~~ldLie~~~~ 448 (693)
T cd01377 371 QRAYFIGVLDIAG-FEIFD-FNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPM 448 (693)
T ss_pred CCCceEEEEeccc-ccccC-CCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCCcHHHHHHHhcCCC
Confidence 4677899999999 99999 99999999999999999999999999999999999999999999 599999999999999
Q ss_pred cccccchhhhhcCCCCchhHHHHhhhhh
Q psy14368 87 GLLCVLDDQAKRGNATLRYENMKLYIDT 114 (128)
Q Consensus 87 Gll~lLDeec~~p~~td~~~~~kl~~~~ 114 (128)
|||++|||||++|++||++|++|+....
T Consensus 449 Gil~lLdee~~~~~~tD~~~~~kl~~~~ 476 (693)
T cd01377 449 GILSLLDEECVFPKATDKTFVEKLYDNH 476 (693)
T ss_pred chHhhhhHHhcCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999999998654
No 12
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=100.00 E-value=3.7e-34 Score=247.63 Aligned_cols=105 Identities=43% Similarity=0.669 Sum_probs=99.7
Q ss_pred CCCCcceeeecceeeecccCCCchhhhHhhhhhhhhhhhhhhhhhhhhhhhhhhcCcceeeeeeCCcHHHHHHHhcCCCc
Q psy14368 8 EQDTNVTRRDTQELKHEYYYVTSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNG 87 (128)
Q Consensus 8 ~~~~~~~i~di~~lfE~f~~~NsfeQlciN~anEkLq~~~~~~if~~e~eey~~Egi~~~~i~~~dn~~~ldLi~~~p~G 87 (128)
.....+||||||| ||+|+ .|||||||||||||+||++|++++|..++++|.+|||+|+.++|.||++|+|||++ |.|
T Consensus 365 ~~~~~IgiLDI~G-FE~f~-~NsfEQLcINyaNEkLQ~~f~~~iF~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~-~~G 441 (691)
T cd01380 365 KQTSFIGVLDIYG-FETFE-KNSFEQFCINYANEKLQQQFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIES-KLG 441 (691)
T ss_pred CccceEEEEecCc-ccccC-CCCHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHHHHHHHhC-CCc
Confidence 3456799999999 99999 99999999999999999999999999999999999999999999999999999996 689
Q ss_pred ccccchhhhhcCCCCchhHHHHhhhhhh
Q psy14368 88 LLCVLDDQAKRGNATLRYENMKLYIDTE 115 (128)
Q Consensus 88 ll~lLDeec~~p~~td~~~~~kl~~~~~ 115 (128)
||++|||||++|+++|++|++||.....
T Consensus 442 il~lLdee~~~p~~td~~f~~kl~~~~~ 469 (691)
T cd01380 442 ILSLLDEECRLPKGSDESWAQKLYNKLP 469 (691)
T ss_pred hHHHhHHhhcCCCCChHHHHHHHHHHhc
Confidence 9999999999999999999999987654
No 13
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=100.00 E-value=1.6e-33 Score=243.25 Aligned_cols=105 Identities=46% Similarity=0.694 Sum_probs=101.4
Q ss_pred CCCCcceeeecceeeecccCCCchhhhHhhhhhhhhhhhhhhhhhhhhhhhhhhcCcceeeeeeCCcHHHHHHHhcCCCc
Q psy14368 8 EQDTNVTRRDTQELKHEYYYVTSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNG 87 (128)
Q Consensus 8 ~~~~~~~i~di~~lfE~f~~~NsfeQlciN~anEkLq~~~~~~if~~e~eey~~Egi~~~~i~~~dn~~~ldLi~~~p~G 87 (128)
.....+||||||| ||+|+ .|||||||||||||+||++|++++|..++++|.+|||+|+.++|.||++|+|||+++|.|
T Consensus 366 ~~~~~IgiLDifG-FE~f~-~NsfEQLcINyaNEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dN~~~l~li~~~~~G 443 (677)
T smart00242 366 GSTYFIGVLDIYG-FEIFE-VNSFEQLCINYANEKLQQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPG 443 (677)
T ss_pred CCceEEEEEeccc-ccccc-cCCHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHHcCCcc
Confidence 5667899999999 99999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhhcCCCCchhHHHHhhhhh
Q psy14368 88 LLCVLDDQAKRGNATLRYENMKLYIDT 114 (128)
Q Consensus 88 ll~lLDeec~~p~~td~~~~~kl~~~~ 114 (128)
|+++|||||++|+++|++|++|+....
T Consensus 444 il~lLdee~~~~~~td~~~~~kl~~~~ 470 (677)
T smart00242 444 ILSLLDEECRFPKATDQTFLEKLNQTH 470 (677)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 999999999999999999999998754
No 14
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=99.98 E-value=3.8e-33 Score=241.04 Aligned_cols=107 Identities=43% Similarity=0.629 Sum_probs=102.4
Q ss_pred CCCCCcceeeecceeeecccCCCchhhhHhhhhhhhhhhhhhhhhhhhhhhhhhhcCcceeeeeeCCcHHHHHHHhcCCC
Q psy14368 7 TEQDTNVTRRDTQELKHEYYYVTSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPN 86 (128)
Q Consensus 7 ~~~~~~~~i~di~~lfE~f~~~NsfeQlciN~anEkLq~~~~~~if~~e~eey~~Egi~~~~i~~~dn~~~ldLi~~~p~ 86 (128)
......+||||||| ||+|+ .|||||||||||||+||++|++++|..++++|.+|||.|..++|.||++|+|||+++|.
T Consensus 358 ~~~~~~IgiLDi~G-FE~f~-~NsfEQLcINy~NEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~ldli~~~~~ 435 (679)
T cd00124 358 DGRSLFIGILDIFG-FEIFE-KNSFEQLCINYANEKLQQFFNQHVFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPG 435 (679)
T ss_pred CCCCceeeEEeccc-cccCC-CCCHHHHhcccchHHHHHHHHHHHHHHHHHHHHhcCCCccCCcCCCCHHHHHHHhcCCC
Confidence 45677899999999 99999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhhhcCCCCchhHHHHhhhhhh
Q psy14368 87 GLLCVLDDQAKRGNATLRYENMKLYIDTE 115 (128)
Q Consensus 87 Gll~lLDeec~~p~~td~~~~~kl~~~~~ 115 (128)
||+++|||||++|+++|++|++|+.....
T Consensus 436 Gi~~lLdee~~~~~~~d~~~~~kl~~~~~ 464 (679)
T cd00124 436 GLLSLLDEECLFPKGTDETFLEKLNNKLK 464 (679)
T ss_pred cHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999987543
No 15
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=99.97 E-value=2.5e-32 Score=238.17 Aligned_cols=105 Identities=26% Similarity=0.344 Sum_probs=96.4
Q ss_pred CCCcceeeecceeeecccCC------CchhhhHhhhhhhhhhhhhhhhhhhhhhhhhhhcCcceeeeee-CCcHHHHHHH
Q psy14368 9 QDTNVTRRDTQELKHEYYYV------TSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLV 81 (128)
Q Consensus 9 ~~~~~~i~di~~lfE~f~~~------NsfeQlciN~anEkLq~~~~~~if~~e~eey~~Egi~~~~i~~-~dn~~~ldLi 81 (128)
....+||||||| ||+|+ + |||||||||||||+||++|++++|+.++++|.+|||+|+.+.+ .||.+|++||
T Consensus 371 ~~~~IgiLDIfG-FE~f~-~n~~~~~NsfEQLcINyaNEkLQq~f~~~vF~~Eq~eY~~EGI~~~~~~~~~dn~~~i~li 448 (767)
T cd01386 371 SIASIMLVDTPG-FQNPA-SQGKDRAATFEELCHNYLQERLQLLFHHRTFVQPLERYAEEGVEVEFDLAEPSPGTTVALV 448 (767)
T ss_pred CCcEEEEEeccc-ccccc-cccccCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCchhhHHHh
Confidence 346899999999 99997 5 8999999999999999999999999999999999999986655 7999999999
Q ss_pred hcCC--------------CcccccchhhhhcCCCCchhHHHHhhhhhh
Q psy14368 82 EGKP--------------NGLLCVLDDQAKRGNATLRYENMKLYIDTE 115 (128)
Q Consensus 82 ~~~p--------------~Gll~lLDeec~~p~~td~~~~~kl~~~~~ 115 (128)
+++| .|||++|||||++|++||++|++||+...+
T Consensus 449 d~~p~~~~~~~~~~~~~~~GIl~lLDEec~~p~~tD~~f~~kl~~~~~ 496 (767)
T cd01386 449 DQAPQQVVVPAGLRAEDARGLLWLLDEEALVPGSSDDTFLERLFAAYG 496 (767)
T ss_pred hcccccccccchhhccCCCchhhhhhHhhcCCCCcHHHHHHHHHHHhc
Confidence 9865 599999999999999999999999987543
No 16
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=99.97 E-value=7.5e-32 Score=232.87 Aligned_cols=105 Identities=45% Similarity=0.731 Sum_probs=93.9
Q ss_pred CCCCcceeeecceeeecccCCCchhhhHhhhhhhhhhhhhhhhhhhhhhhhhhhcCcceeeeee-CCcHHHHHHHhcCCC
Q psy14368 8 EQDTNVTRRDTQELKHEYYYVTSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPN 86 (128)
Q Consensus 8 ~~~~~~~i~di~~lfE~f~~~NsfeQlciN~anEkLq~~~~~~if~~e~eey~~Egi~~~~i~~-~dn~~~ldLi~~~p~ 86 (128)
.....+||||||| ||+|. .|+|||||||||||+||++|++++|..++++|.+|||.|+.++| .||++|+|||+++|.
T Consensus 361 ~~~~~IgILDi~G-FE~~~-~N~fEQLciNyanErLq~~f~~~~f~~e~~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~ 438 (689)
T PF00063_consen 361 ENSSSIGILDIFG-FENFS-VNSFEQLCINYANERLQQFFNQHIFKSEQEEYKEEGIDWPFIDFNPDNQPCLDLIEKKPK 438 (689)
T ss_dssp S-SEEEEEEEEE--B---S-SB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCS-GCGHHHHHHHHHHSSTT
T ss_pred cccccCcccCccc-ccccc-ccccccceeeeccccccceeeeecccccccccccccccccccccccCchhhhhhhccccC
Confidence 4677899999999 99999 99999999999999999999999999999999999999999999 999999999999999
Q ss_pred cccccchhhhhcCCCCchhHHHHhhhhh
Q psy14368 87 GLLCVLDDQAKRGNATLRYENMKLYIDT 114 (128)
Q Consensus 87 Gll~lLDeec~~p~~td~~~~~kl~~~~ 114 (128)
|||++|||||++|+++|++|++|+....
T Consensus 439 Gil~lLdee~~~~~~sd~~fl~kl~~~~ 466 (689)
T PF00063_consen 439 GILSLLDEECLLPRGSDESFLEKLLKRH 466 (689)
T ss_dssp SHHHHHHHHCTSTTS-HHHHHHHHHHHH
T ss_pred CHHHHhhhhhhcccchhhHHHHHHHhhc
Confidence 9999999999999999999999998766
No 17
>KOG0164|consensus
Probab=99.97 E-value=2.6e-31 Score=226.26 Aligned_cols=106 Identities=37% Similarity=0.538 Sum_probs=99.0
Q ss_pred CCCCCCcceeeecceeeecccCCCchhhhHhhhhhhhhhhhhhhhhhhhhhhhhhhcCcceeeeeeCCcHHHHHHHhcCC
Q psy14368 6 ATEQDTNVTRRDTQELKHEYYYVTSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKP 85 (128)
Q Consensus 6 ~~~~~~~~~i~di~~lfE~f~~~NsfeQlciN~anEkLq~~~~~~if~~e~eey~~Egi~~~~i~~~dn~~~ldLi~~~p 85 (128)
+...+.-+|+|||+| ||+|+ .|||||||||||||||||.|++.++++|||||.+|||+|.+++|.+|..++||++.+.
T Consensus 370 ~~~~~~Vigvldiyg-feif~-~NSFEQfcINYCNEKLQQlFIel~LKqEQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~ 447 (1001)
T KOG0164|consen 370 LRKGNTVIGVLDIYG-FEIFQ-DNSFEQFCINYCNEKLQQLFIELVLKQEQEEYEREGIEWTHIDYFNNKIICDLVEQPH 447 (1001)
T ss_pred cccCceEEEEEEeee-EEeec-CCcHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCCceehhhcCCceeeehhccCc
Confidence 333456788999999 99999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccchhhhhcC-CCCchhHHHHhhhh
Q psy14368 86 NGLLCVLDDQAKRG-NATLRYENMKLYID 113 (128)
Q Consensus 86 ~Gll~lLDeec~~p-~~td~~~~~kl~~~ 113 (128)
.||++||||||+.| +.||.+|+++|...
T Consensus 448 ~GIlailDe~Cl~~G~vtD~tfL~~l~~~ 476 (1001)
T KOG0164|consen 448 KGILAILDEACLRPGTVTDETFLEKLNQK 476 (1001)
T ss_pred cchhhhhhHHhcCCCccchHHHHHHHHHH
Confidence 99999999999988 58999999998663
No 18
>KOG0161|consensus
Probab=99.97 E-value=3.2e-31 Score=244.31 Aligned_cols=106 Identities=41% Similarity=0.625 Sum_probs=101.5
Q ss_pred CCCCCCcceeeecceeeecccCCCchhhhHhhhhhhhhhhhhhhhhhhhhhhhhhhcCcceeeeee-CCcHHHHHHHhcC
Q psy14368 6 ATEQDTNVTRRDTQELKHEYYYVTSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGK 84 (128)
Q Consensus 6 ~~~~~~~~~i~di~~lfE~f~~~NsfeQlciN~anEkLq~~~~~~if~~e~eey~~Egi~~~~i~~-~dn~~~ldLi~~~ 84 (128)
.....+++||+||.| ||||+ .||||||||||+||+||++|++++|..++++|.+|||.|.+|+| .|-++|++||+ +
T Consensus 443 ~~~~~~fIgvLDiaG-FEIfe-~nSFEQLciNytnEkLQqfFnh~mFvlEqeeY~~EgIew~fidfG~Dlq~~idLIE-k 519 (1930)
T KOG0161|consen 443 KQQRDYFIGVLDIAG-FEIFE-FNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWDFIDFGLDLQPTIDLIE-K 519 (1930)
T ss_pred ccccCCcceeeeecc-ccccC-cCCHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHhCCceeeeccccchhhhHHHHh-c
Confidence 345678999999999 99999 99999999999999999999999999999999999999999999 89999999999 5
Q ss_pred CCcccccchhhhhcCCCCchhHHHHhhhhh
Q psy14368 85 PNGLLCVLDDQAKRGNATLRYENMKLYIDT 114 (128)
Q Consensus 85 p~Gll~lLDeec~~p~~td~~~~~kl~~~~ 114 (128)
|.||+++|||||.+|++||.+|+.||..++
T Consensus 520 p~Gi~slLdEEc~~PkAtd~tf~~kL~~~~ 549 (1930)
T KOG0161|consen 520 PMGILSLLDEECVVPKATDKTFLEKLCDQH 549 (1930)
T ss_pred hhhHHHHHHHHHhcCCCccchHHHHHHHHh
Confidence 889999999999999999999999999876
No 19
>KOG0163|consensus
Probab=99.95 E-value=5e-29 Score=213.42 Aligned_cols=110 Identities=36% Similarity=0.582 Sum_probs=103.1
Q ss_pred CCCcceeeecceeeecccCCCchhhhHhhhhhhhhhhhhhhhhhhhhhhhhhhcCcceeeeeeCCcHHHHHHHhcCCCcc
Q psy14368 9 QDTNVTRRDTQELKHEYYYVTSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGL 88 (128)
Q Consensus 9 ~~~~~~i~di~~lfE~f~~~NsfeQlciN~anEkLq~~~~~~if~~e~eey~~Egi~~~~i~~~dn~~~ldLi~~~p~Gl 88 (128)
+...+|+|||.| ||.|. +|||||||||||||+||++|++++++.+|+.|..||+.++.|.|.||++|++||+.|..||
T Consensus 449 St~fiGVLDiAG-FEyf~-~NSFEQFCINyCNEKLQ~FFNerILkeEQElYekEGLnv~ei~f~DNqDcIeL~E~K~~Gi 526 (1259)
T KOG0163|consen 449 STFFIGVLDIAG-FEYFA-VNSFEQFCINYCNEKLQKFFNERILKEEQELYEKEGLNVPEIEFTDNQDCIELIEAKSNGI 526 (1259)
T ss_pred ccceeEEEeecc-ceeee-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEeccchhHHHHHHHhccch
Confidence 345789999999 99999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhhcCCCCchhHHHHhhhhhhhHHHh
Q psy14368 89 LCVLDDQAKRGNATLRYENMKLYIDTEFMFDL 120 (128)
Q Consensus 89 l~lLDeec~~p~~td~~~~~kl~~~~~~~~~~ 120 (128)
|.|||||.++|+++++.|..+....++.-.+|
T Consensus 527 fdlLDEEaklP~~s~qhFT~~vHe~~k~HfRL 558 (1259)
T KOG0163|consen 527 FDLLDEEAKLPKPSYQHFTARVHESNKNHFRL 558 (1259)
T ss_pred hhhhhhhccCCCcchHHHHHHHHHhhhcceee
Confidence 99999999999999999999988766554444
No 20
>KOG0162|consensus
Probab=99.95 E-value=4.5e-29 Score=213.09 Aligned_cols=105 Identities=30% Similarity=0.505 Sum_probs=98.4
Q ss_pred CCCCCCCcceeeecceeeecccCCCchhhhHhhhhhhhhhhhhhhhhhhhhhhhhhhcCcceeeeeeCCcHHHHHHHhcC
Q psy14368 5 RATEQDTNVTRRDTQELKHEYYYVTSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGK 84 (128)
Q Consensus 5 ~~~~~~~~~~i~di~~lfE~f~~~NsfeQlciN~anEkLq~~~~~~if~~e~eey~~Egi~~~~i~~~dn~~~ldLi~~~ 84 (128)
.|+..+..+|||||+| ||||+ +||||||||||+||||||.|++.+++.|||+|.+|||.|.+|.|+||.-++|||+.|
T Consensus 377 ~~~~~~~sIGiLDIYG-FEIFe-~N~FEQ~CINfVNEKLQQIFIeLTLKaEQEeYvrE~I~WTpIkYFnNKvVCDLIE~K 454 (1106)
T KOG0162|consen 377 FKGSEEYSIGILDIYG-FEIFE-NNGFEQFCINFVNEKLQQIFIELTLKAEQEEYVREGIKWTPIKYFNNKVVCDLIENK 454 (1106)
T ss_pred CCCccccceeeEEeee-eeecc-cCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcccccchhhcCCeeeeehhhcc
Confidence 4778889999999999 99999 999999999999999999999999999999999999999999999999999999875
Q ss_pred -CCcccccchhhhhcC----CCCchhHHHHhh
Q psy14368 85 -PNGLLCVLDDQAKRG----NATLRYENMKLY 111 (128)
Q Consensus 85 -p~Gll~lLDeec~~p----~~td~~~~~kl~ 111 (128)
|.||+++|||.|... .+.|+.|+.||.
T Consensus 455 ~PPGims~ldD~~At~Ha~~~~aDqa~~qrLn 486 (1106)
T KOG0162|consen 455 RPPGIMSALDDVCATAHADSEGADQALLQRLN 486 (1106)
T ss_pred CCchHHHHHHHHHHHhccccchhHHHHHHHHH
Confidence 889999999999864 567888888886
No 21
>KOG0160|consensus
Probab=99.93 E-value=4e-27 Score=205.60 Aligned_cols=103 Identities=47% Similarity=0.706 Sum_probs=98.9
Q ss_pred CCcceeeecceeeecccCCCchhhhHhhhhhhhhhhhhhhhhhhhhhhhhhhcCcceeeeeeCCcHHHHHHHhcCCCccc
Q psy14368 10 DTNVTRRDTQELKHEYYYVTSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 89 (128)
Q Consensus 10 ~~~~~i~di~~lfE~f~~~NsfeQlciN~anEkLq~~~~~~if~~e~eey~~Egi~~~~i~~~dn~~~ldLi~~~p~Gll 89 (128)
...+|+|||+| ||.|+ .|+||||||||+||+||+.|++|+|+.++++|..|+|+|..++|.||++|+++|++ |.|++
T Consensus 367 ~~~igVLDiYg-FEsF~-~nsfeQfcINyanEkLqq~fnqHvfk~Eqeey~~e~i~Ws~ief~dNq~~~~lie~-~~Gi~ 443 (862)
T KOG0160|consen 367 ERFIGVLDIYG-FESFE-VNSFEQFCINYANEKLQQQFNQHVFKLEQEEYTKEEIDWSGIEFRDNQECLDLIEK-PLGIL 443 (862)
T ss_pred cceeeeehccc-ccccc-cCcHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhhccccccccCcCccchhhhhcc-ccchh
Confidence 45789999999 99999 99999999999999999999999999999999999999999999999999999996 99999
Q ss_pred ccchhhhhcCCCCchhHHHHhhhhhh
Q psy14368 90 CVLDDQAKRGNATLRYENMKLYIDTE 115 (128)
Q Consensus 90 ~lLDeec~~p~~td~~~~~kl~~~~~ 115 (128)
+||||+|.+|+++|.+|..||+....
T Consensus 444 ~Llde~c~lp~~t~~~~a~KL~~~~~ 469 (862)
T KOG0160|consen 444 ALLDEECMLPKGTDETLAQKLYQTLK 469 (862)
T ss_pred hccchhccCCCCCcchHHHHHHHHhc
Confidence 99999999999999999999988444
No 22
>KOG4229|consensus
Probab=99.90 E-value=6.8e-25 Score=195.22 Aligned_cols=109 Identities=42% Similarity=0.629 Sum_probs=103.6
Q ss_pred CCcceeeecceeeecccCCCchhhhHhhhhhhhhhhhhhhhhhhhhhhhhhhcCcceeeeeeCCcHHHHHHHhcCCCccc
Q psy14368 10 DTNVTRRDTQELKHEYYYVTSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 89 (128)
Q Consensus 10 ~~~~~i~di~~lfE~f~~~NsfeQlciN~anEkLq~~~~~~if~~e~eey~~Egi~~~~i~~~dn~~~ldLi~~~p~Gll 89 (128)
...+|++|||| ||.|. .|+|||+|||||||++|.+|++++|..++++|..|+|.|..+.|.||..|+|+|..||+||+
T Consensus 426 ~~~IgiLdiFg-fE~f~-~nsfEq~~in~Ane~lQ~~fnqhIf~~Eq~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gil 503 (1062)
T KOG4229|consen 426 ILSIGILDIFG-FENFE-RNSFEQLCINLANEQLQYYFNQHIFALEQEEYDNESIDWRNIEFADNRRRLDLISPKPMGIL 503 (1062)
T ss_pred cceeehhhhhc-ccchh-hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCeeeeeeeeccchhhhhccCccchh
Confidence 46789999999 99998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhcCCCCchhHHHHhhhhhhhHHHh
Q psy14368 90 CVLDDQAKRGNATLRYENMKLYIDTEFMFDL 120 (128)
Q Consensus 90 ~lLDeec~~p~~td~~~~~kl~~~~~~~~~~ 120 (128)
.+||||+.+|++||++.+.|+..+++..+-+
T Consensus 504 ~liDees~fP~~td~tl~~k~~~q~~~~~~y 534 (1062)
T KOG4229|consen 504 SLIDEESRFPKATDQTLLLKLNMQHGSNNLY 534 (1062)
T ss_pred heecccCcCCchHHHHHHHHhhhhhhccccc
Confidence 9999999999999999999999887764433
No 23
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=23.79 E-value=53 Score=24.07 Aligned_cols=48 Identities=19% Similarity=0.199 Sum_probs=23.2
Q ss_pred hhhhhhcCcceeeeeeCCcHHHHHHHhcCCCc----ccccchhhhhcCCCCchh
Q psy14368 56 QEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNG----LLCVLDDQAKRGNATLRY 105 (128)
Q Consensus 56 ~eey~~Egi~~~~i~~~dn~~~ldLi~~~p~G----ll~lLDeec~~p~~td~~ 105 (128)
..+-..+||+.-+++-.-....++++..+|.| ++.+|-+ +.|-+.|+.
T Consensus 6 v~eRa~~GipPlPL~a~Qt~~lielLk~~~~~~~~~lldLL~~--RV~PGVD~A 57 (154)
T PF11791_consen 6 VAERAALGIPPLPLNAEQTAELIELLKNPPAGEEAFLLDLLTN--RVPPGVDEA 57 (154)
T ss_dssp HHHHHCTT-------HHHHHHHHHHHHS--TT-HHHHHHHHHH--SS--TT-HH
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHhCCCCccHHHHHHHHHh--cCCCCCChH
Confidence 34446678876666544556788999988877 6666655 334455554
Done!