Query psy14368
Match_columns 128
No_of_seqs 104 out of 1049
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 18:05:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14368.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14368hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v26_A Myosin VI; calmodulin-b 100.0 9.6E-37 3.3E-41 265.3 8.1 106 8-115 443-548 (784)
2 1lkx_A Myosin IE heavy chain; 100.0 8.5E-37 2.9E-41 262.9 7.5 105 8-114 377-481 (697)
3 1w7j_A Myosin VA; motor protei 100.0 4.4E-36 1.5E-40 261.4 7.8 103 9-114 429-531 (795)
4 4anj_A Unconventional myosin-V 100.0 7E-36 2.4E-40 265.7 8.0 107 7-115 446-552 (1052)
5 4db1_A Myosin-7; S1DC, cardiac 100.0 7.4E-36 2.5E-40 259.5 6.8 104 8-114 452-556 (783)
6 1w9i_A Myosin II heavy chain; 100.0 9.8E-36 3.3E-40 258.3 7.4 103 10-114 447-551 (770)
7 1kk8_A Myosin heavy chain, str 100.0 1.7E-35 5.9E-40 258.8 6.8 104 8-114 451-555 (837)
8 2dfs_A Myosin-5A; myosin-V, in 100.0 3.2E-35 1.1E-39 262.6 7.3 104 8-114 428-531 (1080)
9 2ycu_A Non muscle myosin 2C, a 100.0 5E-35 1.7E-39 259.6 7.5 104 9-114 425-531 (995)
10 1g8x_A Myosin II heavy chain f 100.0 2.4E-34 8.3E-39 255.5 7.4 104 9-114 446-551 (1010)
11 1i84_S Smooth muscle myosin he 100.0 3.6E-34 1.2E-38 257.4 6.2 104 9-114 456-562 (1184)
12 1y4m_A HERV-FRD_6P24.1 proviru 27.7 14 0.00048 21.4 0.2 26 73-98 25-50 (53)
13 1mof_A Moloney murine leukemia 23.2 17 0.0006 21.2 0.0 26 73-98 27-52 (55)
No 1
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=100.00 E-value=9.6e-37 Score=265.32 Aligned_cols=106 Identities=29% Similarity=0.486 Sum_probs=101.6
Q ss_pred CCCCcceeeecceeeecccCCCchhhhHhhhhhhhhhhhhhhhhhhhhhhhhhhcCcceeeeeeCCcHHHHHHHhcCCCc
Q psy14368 8 EQDTNVTRRDTQELKHEYYYVTSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNG 87 (128)
Q Consensus 8 ~~~~~~~i~di~~lfE~f~~~NsfeQlciN~anEkLq~~~~~~if~~e~eey~~Egi~~~~i~~~dn~~~ldLi~~~p~G 87 (128)
.....+|||||+| ||+|+ .||||||||||||||||++|++++|+.||++|.+|||+|..++|.||++|+|||+++|.|
T Consensus 443 ~~~~~IGvLDI~G-FE~f~-~NsFEQlcINyaNEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~DN~~~idLie~kp~G 520 (784)
T 2v26_A 443 TSSYFIGVLDIAG-FEYFE-HNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVG 520 (784)
T ss_dssp CCSEEEEEEECCC-CCCCS-SCCHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTS
T ss_pred cccceeeecccCC-cccCC-cCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCcccccccChHHHHHHHhhcccc
Confidence 4457899999999 99999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhhcCCCCchhHHHHhhhhhh
Q psy14368 88 LLCVLDDQAKRGNATLRYENMKLYIDTE 115 (128)
Q Consensus 88 ll~lLDeec~~p~~td~~~~~kl~~~~~ 115 (128)
||+||||||++|++||++|++||+....
T Consensus 521 IlslLDEe~~~p~~tD~~f~~kl~~~~~ 548 (784)
T 2v26_A 521 ILDILDEENRLPQPSDQHFTSAVHQKHK 548 (784)
T ss_dssp HHHHHHHHHHSSSCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHhC
Confidence 9999999999999999999999987554
No 2
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=100.00 E-value=8.5e-37 Score=262.93 Aligned_cols=105 Identities=33% Similarity=0.463 Sum_probs=101.0
Q ss_pred CCCCcceeeecceeeecccCCCchhhhHhhhhhhhhhhhhhhhhhhhhhhhhhhcCcceeeeeeCCcHHHHHHHhcCCCc
Q psy14368 8 EQDTNVTRRDTQELKHEYYYVTSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNG 87 (128)
Q Consensus 8 ~~~~~~~i~di~~lfE~f~~~NsfeQlciN~anEkLq~~~~~~if~~e~eey~~Egi~~~~i~~~dn~~~ldLi~~~p~G 87 (128)
.....+|||||+| ||+|+ .||||||||||||||||++|++++|+.||++|.+|||+|..++|.||++|+|||+++|.|
T Consensus 377 ~~~~~IGvLDI~G-FE~f~-~NsFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dN~~~idLie~kp~G 454 (697)
T 1lkx_A 377 EKGPVIGILDIYG-FEVFQ-NNSFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIG 454 (697)
T ss_dssp CCCCEEEEEECCC-CCCCS-SBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHTTSSSSS
T ss_pred CCceeEEeecccc-ccccC-cCCHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCHHHHHHHhcccCC
Confidence 4467899999999 99999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhhcCCCCchhHHHHhhhhh
Q psy14368 88 LLCVLDDQAKRGNATLRYENMKLYIDT 114 (128)
Q Consensus 88 ll~lLDeec~~p~~td~~~~~kl~~~~ 114 (128)
||+||||||++|++||++|++|++...
T Consensus 455 ilslLDEec~~p~~tD~~f~~kl~~~~ 481 (697)
T 1lkx_A 455 LISLLDEACLIAKSTDQTFLDSICKQF 481 (697)
T ss_dssp HHHHHHHHHHSTTCCHHHHHHHHHHHS
T ss_pred hhhhhHHhhCCCCCChHHHHHHHHHHh
Confidence 999999999999999999999998743
No 3
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=100.00 E-value=4.4e-36 Score=261.38 Aligned_cols=103 Identities=44% Similarity=0.656 Sum_probs=99.5
Q ss_pred CCCcceeeecceeeecccCCCchhhhHhhhhhhhhhhhhhhhhhhhhhhhhhhcCcceeeeeeCCcHHHHHHHhcCCCcc
Q psy14368 9 QDTNVTRRDTQELKHEYYYVTSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGL 88 (128)
Q Consensus 9 ~~~~~~i~di~~lfE~f~~~NsfeQlciN~anEkLq~~~~~~if~~e~eey~~Egi~~~~i~~~dn~~~ldLi~~~p~Gl 88 (128)
....+|||||+| ||+|+ .||||||||||||||||++|++++|+.||++|.+|||+|..++|.||++|+|||+++ .||
T Consensus 429 ~~~~IGvLDI~G-FE~f~-~NsFEQlcINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~DN~~~idLie~~-~GI 505 (795)
T 1w7j_A 429 QHSFIGVLDIYG-FETFE-INSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGV 505 (795)
T ss_dssp CSEEEEEEECCC-CCCCS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCCCCCHHHHHHHHST-TSH
T ss_pred ccceEEeeccCc-ccccC-cCCHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCCcccccCccccHHHHHHHHhc-CCH
Confidence 567899999999 99999 999999999999999999999999999999999999999999999999999999986 999
Q ss_pred cccchhhhhcCCCCchhHHHHhhhhh
Q psy14368 89 LCVLDDQAKRGNATLRYENMKLYIDT 114 (128)
Q Consensus 89 l~lLDeec~~p~~td~~~~~kl~~~~ 114 (128)
|+||||||++|++||++|++||+..+
T Consensus 506 lslLDEec~~p~~tD~~f~~kl~~~~ 531 (795)
T 1w7j_A 506 LDLLDEECKMPKGSDDTWAQKLYNTH 531 (795)
T ss_dssp HHHHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred HHhhhhhccCCCCChHHHHHHHHHHh
Confidence 99999999999999999999998765
No 4
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=100.00 E-value=7e-36 Score=265.73 Aligned_cols=107 Identities=29% Similarity=0.481 Sum_probs=102.0
Q ss_pred CCCCCcceeeecceeeecccCCCchhhhHhhhhhhhhhhhhhhhhhhhhhhhhhhcCcceeeeeeCCcHHHHHHHhcCCC
Q psy14368 7 TEQDTNVTRRDTQELKHEYYYVTSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPN 86 (128)
Q Consensus 7 ~~~~~~~~i~di~~lfE~f~~~NsfeQlciN~anEkLq~~~~~~if~~e~eey~~Egi~~~~i~~~dn~~~ldLi~~~p~ 86 (128)
......+|||||+| ||+|+ .|||||||||||||+||++|++++|+.++++|.+|||+|..++|.||++|+|||+++|.
T Consensus 446 ~~~~~~IGILDI~G-FE~f~-~NsFEQLCINyaNEkLQq~Fn~~vF~~EqeeY~~EgI~w~~I~f~DN~~~idLie~kp~ 523 (1052)
T 4anj_A 446 ETSSYFIGVLDIAG-FEYFE-HNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLV 523 (1052)
T ss_dssp SCCSEEEEEEECCC-CCCCS-SCCHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTT
T ss_pred ccccceEEEEecCC-Ccccc-cCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCcccCCcCCcHHHHHHHHcCcc
Confidence 34456799999999 99999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhhhcCCCCchhHHHHhhhhhh
Q psy14368 87 GLLCVLDDQAKRGNATLRYENMKLYIDTE 115 (128)
Q Consensus 87 Gll~lLDeec~~p~~td~~~~~kl~~~~~ 115 (128)
|||+||||||++|++||++|++|++..+.
T Consensus 524 GIl~lLDEe~~~p~~tD~~f~~kl~~~~~ 552 (1052)
T 4anj_A 524 GILDILDEENRLPQPSDQHFTSAVHQKHK 552 (1052)
T ss_dssp SHHHHHHHHHHSSSCCHHHHHHHHHHTTT
T ss_pred cHHHHHHHHhcCCCCcHHHHHHHHHHHhc
Confidence 99999999999999999999999987554
No 5
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=100.00 E-value=7.4e-36 Score=259.52 Aligned_cols=104 Identities=38% Similarity=0.658 Sum_probs=97.7
Q ss_pred CCCCcceeeecceeeecccCCCchhhhHhhhhhhhhhhhhhhhhhhhhhhhhhhcCcceeeeee-CCcHHHHHHHhcCCC
Q psy14368 8 EQDTNVTRRDTQELKHEYYYVTSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPN 86 (128)
Q Consensus 8 ~~~~~~~i~di~~lfE~f~~~NsfeQlciN~anEkLq~~~~~~if~~e~eey~~Egi~~~~i~~-~dn~~~ldLi~~~p~ 86 (128)
.....+|||||+| ||+|+ .||||||||||||||||++|++++|+.||++|.+|||+|..++| .||++|+|||++ |.
T Consensus 452 ~~~~~IGvLDI~G-FE~f~-~NsFEQlCINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~~Dn~~~idLiek-p~ 528 (783)
T 4db1_A 452 PRQYFIGVLDIAG-FEIFD-FNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIEK-PM 528 (783)
T ss_dssp CCSEEEEEEECCC-CCCCS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCGGGGGHHHHHHHHS-TT
T ss_pred CCCceEEEecccc-ccccc-cCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcccccccCChHHHHHHHhC-CC
Confidence 3456899999999 99999 99999999999999999999999999999999999999999999 599999999995 89
Q ss_pred cccccchhhhhcCCCCchhHHHHhhhhh
Q psy14368 87 GLLCVLDDQAKRGNATLRYENMKLYIDT 114 (128)
Q Consensus 87 Gll~lLDeec~~p~~td~~~~~kl~~~~ 114 (128)
|||+||||||++|++||++|++||+..+
T Consensus 529 Gil~lLDEec~~p~~tD~tf~~kl~~~~ 556 (783)
T 4db1_A 529 GIMSILEEECMFPKATDMTFKAKLFDNH 556 (783)
T ss_dssp SHHHHHCC-TTCTTCCHHHHHHHHHHHH
T ss_pred chHhhhhHHhcCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999999998754
No 6
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=100.00 E-value=9.8e-36 Score=258.31 Aligned_cols=103 Identities=43% Similarity=0.643 Sum_probs=98.5
Q ss_pred CCcceeeecceeeecccCCCchhhhHhhhhhhhhhhhhhhhhhhhhhhhhhhcCcceeeeee-CCcHHHHHHHhcC-CCc
Q psy14368 10 DTNVTRRDTQELKHEYYYVTSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGK-PNG 87 (128)
Q Consensus 10 ~~~~~i~di~~lfE~f~~~NsfeQlciN~anEkLq~~~~~~if~~e~eey~~Egi~~~~i~~-~dn~~~ldLi~~~-p~G 87 (128)
...+|||||+| ||+|+ .|||||||||||||+||++|++++|+.||++|.+|||+|..++| .||++|+|||+++ |.|
T Consensus 447 ~~~IGvLDI~G-FE~F~-~NsFEQlCINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek~~p~G 524 (770)
T 1w9i_A 447 AYFIGVLDIYG-FEIFK-VNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPG 524 (770)
T ss_dssp SEEEEEEECCC-CCCCS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCGGGGGHHHHHHHHCTTTTC
T ss_pred CCeeeeccCcc-ccccc-cCCHHHHHHHhhHHHHHHHHHhhhhHHHHHHhhccCCCceeeccccCcHHHHHHHhCCCCCc
Confidence 67899999999 99999 99999999999999999999999999999999999999999999 5999999999974 999
Q ss_pred ccccchhhhhcCCCCchhHHHHhhhhh
Q psy14368 88 LLCVLDDQAKRGNATLRYENMKLYIDT 114 (128)
Q Consensus 88 ll~lLDeec~~p~~td~~~~~kl~~~~ 114 (128)
||+||||||++|++||++|++||+.++
T Consensus 525 ilslLDEec~~p~~tD~~f~~kL~~~~ 551 (770)
T 1w9i_A 525 ILALLDEQSVFPNATDNTLITKLHSHF 551 (770)
T ss_dssp HHHHHHHHHSSSSCCHHHHHHHHHHHH
T ss_pred hhhhhhhhhCCCCCChHHHHHHHHHHh
Confidence 999999999999999999999986643
No 7
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=100.00 E-value=1.7e-35 Score=258.79 Aligned_cols=104 Identities=40% Similarity=0.708 Sum_probs=98.6
Q ss_pred CCCCcceeeecceeeecccCCCchhhhHhhhhhhhhhhhhhhhhhhhhhhhhhhcCcceeeeee-CCcHHHHHHHhcCCC
Q psy14368 8 EQDTNVTRRDTQELKHEYYYVTSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPN 86 (128)
Q Consensus 8 ~~~~~~~i~di~~lfE~f~~~NsfeQlciN~anEkLq~~~~~~if~~e~eey~~Egi~~~~i~~-~dn~~~ldLi~~~p~ 86 (128)
.....+|||||+| ||+|+ .|||||||||||||+||++|++++|+.||++|.+|||+|..++| .||++|+|||++ |.
T Consensus 451 ~~~~~IGvLDI~G-FE~f~-~NsFEQlcINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek-p~ 527 (837)
T 1kk8_A 451 KRNYYIGVLDIAG-FEIFD-FNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEK-PM 527 (837)
T ss_dssp CCCEEEEEEECCC-CCCCS-SBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSCCCCHHHHHHHHHHHS-TT
T ss_pred CCcceEEEEecCC-ccccc-cccHHHHHHHHhhHHHHHHHHHhhhHHHHHHhhhcCCceeecccccCHHHHHHHHhc-CC
Confidence 3467899999999 99999 99999999999999999999999999999999999999999999 599999999996 89
Q ss_pred cccccchhhhhcCCCCchhHHHHhhhhh
Q psy14368 87 GLLCVLDDQAKRGNATLRYENMKLYIDT 114 (128)
Q Consensus 87 Gll~lLDeec~~p~~td~~~~~kl~~~~ 114 (128)
|||+||||||++|++||++|++||+.++
T Consensus 528 GIlslLDEec~~p~~tD~tf~~kl~~~~ 555 (837)
T 1kk8_A 528 GILSILEEECMFPKADDKSFQDKLYQNH 555 (837)
T ss_dssp SHHHHHHHHTTCTTCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHhcCCCCChHHHHHHHHHHh
Confidence 9999999999999999999999986543
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=100.00 E-value=3.2e-35 Score=262.55 Aligned_cols=104 Identities=43% Similarity=0.654 Sum_probs=99.8
Q ss_pred CCCCcceeeecceeeecccCCCchhhhHhhhhhhhhhhhhhhhhhhhhhhhhhhcCcceeeeeeCCcHHHHHHHhcCCCc
Q psy14368 8 EQDTNVTRRDTQELKHEYYYVTSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNG 87 (128)
Q Consensus 8 ~~~~~~~i~di~~lfE~f~~~NsfeQlciN~anEkLq~~~~~~if~~e~eey~~Egi~~~~i~~~dn~~~ldLi~~~p~G 87 (128)
.....+||||||| ||+|+ .|||||||||||||+||++|++++|+.++++|.+|||+|..++|.||++|+|||+++ .|
T Consensus 428 ~~~~~IgvLDI~G-FE~f~-~NsFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dn~~~idlie~~-~G 504 (1080)
T 2dfs_A 428 KQHSFIGVLDIYG-FETFE-INSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MG 504 (1080)
T ss_dssp CCCEEEEEEEECC-CCCCS-SBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCCCCCCCHHHHHHHHST-TS
T ss_pred ccCceEEeeccCC-ccccC-cCCHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhcCCccccccccccHHHHHHHhcC-Cc
Confidence 3567899999999 99999 999999999999999999999999999999999999999999999999999999976 89
Q ss_pred ccccchhhhhcCCCCchhHHHHhhhhh
Q psy14368 88 LLCVLDDQAKRGNATLRYENMKLYIDT 114 (128)
Q Consensus 88 ll~lLDeec~~p~~td~~~~~kl~~~~ 114 (128)
||+||||||++|++||++|++||+..+
T Consensus 505 il~lLdee~~~p~~tD~~f~~kl~~~~ 531 (1080)
T 2dfs_A 505 VLDLLDEECKMPKGSDDTWAQKLYNTH 531 (1080)
T ss_dssp HHHHHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred eeeeccccccCCCCChHHHHHHHHHHh
Confidence 999999999999999999999998765
No 9
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=100.00 E-value=5e-35 Score=259.64 Aligned_cols=104 Identities=38% Similarity=0.608 Sum_probs=99.7
Q ss_pred CCCcceeeecceeeecccCCCchhhhHhhhhhhhhhhhhhhhhhhhhhhhhhhcCcceeeeee-CCcHHHHHHHhc--CC
Q psy14368 9 QDTNVTRRDTQELKHEYYYVTSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG--KP 85 (128)
Q Consensus 9 ~~~~~~i~di~~lfE~f~~~NsfeQlciN~anEkLq~~~~~~if~~e~eey~~Egi~~~~i~~-~dn~~~ldLi~~--~p 85 (128)
....+||||||| ||+|+ .|||||||||||||+||++|++++|+.++++|.+|||+|..++| .||++|+|||++ +|
T Consensus 425 ~~~~IgvLDI~G-FE~f~-~NsfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~p 502 (995)
T 2ycu_A 425 GASFLGILDIAG-FEIFQ-LNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIPWTFLDFGLDLQPCIDLIERPANP 502 (995)
T ss_dssp CSEEEEEEECCC-BCCCS-SBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHHHHCCSSS
T ss_pred ccceEEEecccc-ccccc-cchHHHHHHHhhHHHHHHHHHHhhhHHHHHHHhccCCCccccccccChHHHHHHHhccCCC
Confidence 467899999999 99999 99999999999999999999999999999999999999999999 699999999997 48
Q ss_pred CcccccchhhhhcCCCCchhHHHHhhhhh
Q psy14368 86 NGLLCVLDDQAKRGNATLRYENMKLYIDT 114 (128)
Q Consensus 86 ~Gll~lLDeec~~p~~td~~~~~kl~~~~ 114 (128)
.|||+||||||++|++||++|++||+..+
T Consensus 503 ~Gil~lLdee~~~p~~tD~~f~~kl~~~~ 531 (995)
T 2ycu_A 503 PGLLALLDEECWFPKATDKSFVEKVAQEQ 531 (995)
T ss_dssp CCHHHHHHHSSSSTTCCHHHHHHHHHHHH
T ss_pred CchhhhhHHHhcCCCCchHHHHHHHHHhc
Confidence 99999999999999999999999998765
No 10
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=100.00 E-value=2.4e-34 Score=255.48 Aligned_cols=104 Identities=42% Similarity=0.641 Sum_probs=99.0
Q ss_pred CCCcceeeecceeeecccCCCchhhhHhhhhhhhhhhhhhhhhhhhhhhhhhhcCcceeeeee-CCcHHHHHHHhc-CCC
Q psy14368 9 QDTNVTRRDTQELKHEYYYVTSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG-KPN 86 (128)
Q Consensus 9 ~~~~~~i~di~~lfE~f~~~NsfeQlciN~anEkLq~~~~~~if~~e~eey~~Egi~~~~i~~-~dn~~~ldLi~~-~p~ 86 (128)
....+|||||+| ||+|+ .|||||||||||||+||++|++++|+.++++|.+|||+|..++| .||++|+|||++ +|.
T Consensus 446 ~~~~IgvLDI~G-FE~f~-~NsfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~~ 523 (1010)
T 1g8x_A 446 KAYFIGVLDISG-FEIFK-VNSFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPP 523 (1010)
T ss_dssp CSEEEEEEECCC-CCCCS-SBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCCSHHHHHHHHCTTTT
T ss_pred cCceeeeccCcc-cccCC-cCcHHHHHHHhhhHHHHHHHHHHhhHHHHHHhhccCCCccccccccChHHHHHHHhcCCCC
Confidence 567899999999 99999 99999999999999999999999999999999999999999999 599999999997 499
Q ss_pred cccccchhhhhcCCCCchhHHHHhhhhh
Q psy14368 87 GLLCVLDDQAKRGNATLRYENMKLYIDT 114 (128)
Q Consensus 87 Gll~lLDeec~~p~~td~~~~~kl~~~~ 114 (128)
|||+||||||++|++||++|++|+....
T Consensus 524 Gil~lLdee~~~p~~td~~f~~kl~~~~ 551 (1010)
T 1g8x_A 524 GILALLDEQSVFPNATDNTLITKLHSHF 551 (1010)
T ss_dssp CHHHHHHHHTTSSSCCHHHHHHHHHHHH
T ss_pred eeehhhhHHhCCCCCChHHHHHHHHHHh
Confidence 9999999999999999999999987644
No 11
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=100.00 E-value=3.6e-34 Score=257.42 Aligned_cols=104 Identities=39% Similarity=0.611 Sum_probs=97.7
Q ss_pred CCCcceeeecceeeecccCCCchhhhHhhhhhhhhhhhhhhhhhhhhhhhhhhcCcceeeeee-CCcHHHHHHHhcC--C
Q psy14368 9 QDTNVTRRDTQELKHEYYYVTSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGK--P 85 (128)
Q Consensus 9 ~~~~~~i~di~~lfE~f~~~NsfeQlciN~anEkLq~~~~~~if~~e~eey~~Egi~~~~i~~-~dn~~~ldLi~~~--p 85 (128)
....+||||||| ||+|+ .|||||||||||||+||++|++++|..++++|..|||+|..++| .||++|+|||+++ |
T Consensus 456 ~~~~IgvLDi~G-FE~f~-~NsfeQlciNy~nEkLq~~f~~~~f~~eq~ey~~Egi~~~~i~~~~dn~~~~~lie~~~~~ 533 (1184)
T 1i84_S 456 GASFLGILDIAG-FEIFE-INSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNP 533 (1184)
T ss_dssp -CEEEEEEECCC-CCCCS-SBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCSCCCCCCCCCCHHHHHTTSCCSSS
T ss_pred CcceEEEeecCC-cCCCC-cchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCccccccCCCcHHHHHHHhCCCCC
Confidence 457899999999 99999 99999999999999999999999999999999999999999999 5999999999962 3
Q ss_pred CcccccchhhhhcCCCCchhHHHHhhhhh
Q psy14368 86 NGLLCVLDDQAKRGNATLRYENMKLYIDT 114 (128)
Q Consensus 86 ~Gll~lLDeec~~p~~td~~~~~kl~~~~ 114 (128)
.|||+||||||++|++||.+|++||+..+
T Consensus 534 ~Gil~lLdee~~~p~~td~~~~~kl~~~~ 562 (1184)
T 1i84_S 534 PGVLALLDEECWFPKATDTSFVEKLIQEQ 562 (1184)
T ss_dssp CCHHHHHHHTTSCTTCCHHHHHHHHHHHT
T ss_pred CCchhhhhhhhCCCCCChHHHHHHHHHHh
Confidence 49999999999999999999999998765
No 12
>1y4m_A HERV-FRD_6P24.1 provirus ancestral ENV polyprotei; coat protein, membrane fusion, endogenous retrovirus, membra protein; 1.60A {Homo sapiens} SCOP: h.3.2.1
Probab=27.70 E-value=14 Score=21.40 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=22.7
Q ss_pred CcHHHHHHHhcCCCcccccchhhhhc
Q psy14368 73 DNTLCLQLVEGKPNGLLCVLDDQAKR 98 (128)
Q Consensus 73 dn~~~ldLi~~~p~Gll~lLDeec~~ 98 (128)
.|...+|++..+..|+=..|.|+|.+
T Consensus 25 QNRraLDlL~a~~GG~C~~l~e~CC~ 50 (53)
T 1y4m_A 25 QNRRGLDMLTAAQGGICLALDEKCCF 50 (53)
T ss_dssp HHHHHHHHHTGGGTSHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHhCCccHHhcCchhc
Confidence 57888999988888999999999976
No 13
>1mof_A Moloney murine leukemia virus P15; glycoprotein, coat protein, polyprotein, transmembrane, SIGN protein; 1.70A {Moloney murine leukemia virus} SCOP: h.3.2.1
Probab=23.16 E-value=17 Score=21.16 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=22.5
Q ss_pred CcHHHHHHHhcCCCcccccchhhhhc
Q psy14368 73 DNTLCLQLVEGKPNGLLCVLDDQAKR 98 (128)
Q Consensus 73 dn~~~ldLi~~~p~Gll~lLDeec~~ 98 (128)
.|...+|++..+..|+=..|.|+|.+
T Consensus 27 QNRraLD~L~a~~GG~C~~l~e~CCf 52 (55)
T 1mof_A 27 QNRRGLDLLFLKEGGLCAALKEECAF 52 (55)
T ss_dssp HHHHHHHHHTGGGTCHHHHHTSCCCC
T ss_pred HHHHHHHHHHHHhCCccHHHcCchhc
Confidence 57888999988888999999999876
Done!