RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14368
(128 letters)
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane,
vanadate, transport, PRE- powerstroke, transition state,
protein transport; HET: ADP; 1.75A {Sus scrofa} PDB:
2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Length = 784
Score = 133 bits (337), Expect = 1e-37
Identities = 32/79 (40%), Positives = 49/79 (62%)
Query: 24 EYYYVTSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG 83
EY+ SFEQ CINY NE LQ +FN+ + + EQE Y KEG+ + + DN C+ L+E
Sbjct: 457 EYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEA 516
Query: 84 KPNGLLCVLDDQAKRGNAT 102
+ G+L +LD++ + +
Sbjct: 517 RLVGILDILDEENRLPQPS 535
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter
domain, contractIle protein; HET: ADP; 3.00A
{Dictyostelium discoideum} SCOP: c.37.1.9
Length = 697
Score = 130 bits (329), Expect = 2e-36
Identities = 33/73 (45%), Positives = 47/73 (64%)
Query: 30 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 89
SFEQL IN+ NE LQ F + + EQEEY +EGI W++IE+ +N +L+E KP GL+
Sbjct: 397 SFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLI 456
Query: 90 CVLDDQAKRGNAT 102
+LD+ +T
Sbjct: 457 SLLDEACLIAKST 469
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 125 bits (317), Expect = 7e-35
Identities = 40/79 (50%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Query: 24 EYYYVTSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG 83
E + + SFEQ CINYANE LQ FN HVF+ EQEEY KE I W I+F DN C+ L+E
Sbjct: 442 ETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIE- 500
Query: 84 KPNGLLCVLDDQAKRGNAT 102
G+L +LD++ K +
Sbjct: 501 AKMGVLDLLDEECKMPKGS 519
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken,
molecular motor, ATPase, ELC, IQ motif, muscle protein,
ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1
c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Length = 795
Score = 125 bits (316), Expect = 1e-34
Identities = 39/73 (53%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 30 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 89
SFEQ CINYANE LQ FN HVF+ EQEEY KE I W I+F DN C+ L+E G+L
Sbjct: 448 SFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIE-AKMGVL 506
Query: 90 CVLDDQAKRGNAT 102
+LD++ K +
Sbjct: 507 DLLDEECKMPKGS 519
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 120 bits (304), Expect = 4e-33
Identities = 39/82 (47%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 24 EYYYVTSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVE 82
E + + SFEQLCINY NE LQ FN +F EQEEY +EGI W ++F D C+ L+E
Sbjct: 438 EIFQLNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIPWTFLDFGLDLQPCIDLIE 497
Query: 83 G--KPNGLLCVLDDQAKRGNAT 102
P GLL +LD++ AT
Sbjct: 498 RPANPPGLLALLDEECWFPKAT 519
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta,
contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB:
2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A*
1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A*
1o1g_A*
Length = 783
Score = 120 bits (302), Expect = 6e-33
Identities = 38/74 (51%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
Query: 30 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGL 88
SFEQLCIN+ NE LQ +FN H+F EQEEY KEGI W I+F D C+ L+E KP G+
Sbjct: 472 SFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIE-KPMGI 530
Query: 89 LCVLDDQAKRGNAT 102
+ +L+++ AT
Sbjct: 531 MSILEEECMFPKAT 544
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain,
mutant, muscle contraction; HET: ADP; 1.75A
{Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A*
1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A*
1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A*
1jx2_A* 3mjx_A* 2jhr_A* ...
Length = 770
Score = 120 bits (302), Expect = 7e-33
Identities = 40/75 (53%), Positives = 53/75 (70%), Gaps = 2/75 (2%)
Query: 30 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PNG 87
SFEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+ P G
Sbjct: 465 SFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPG 524
Query: 88 LLCVLDDQAKRGNAT 102
+L +LD+Q+ NAT
Sbjct: 525 ILALLDEQSVFPNAT 539
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
motor, contractIle PROT; HET: ADP; 2.30A {Argopecten
irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A*
2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Length = 837
Score = 119 bits (301), Expect = 8e-33
Identities = 40/80 (50%), Positives = 52/80 (65%), Gaps = 2/80 (2%)
Query: 24 EYYYVTSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVE 82
E + SFEQLCINY NE LQ +FN H+F EQEEY KEGI W I+F D +C+ L+E
Sbjct: 465 EIFDFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIE 524
Query: 83 GKPNGLLCVLDDQAKRGNAT 102
KP G+L +L+++ A
Sbjct: 525 -KPMGILSILEEECMFPKAD 543
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 119 bits (300), Expect = 1e-32
Identities = 40/75 (53%), Positives = 53/75 (70%), Gaps = 2/75 (2%)
Query: 30 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PNG 87
SFEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+ P G
Sbjct: 465 SFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPG 524
Query: 88 LLCVLDDQAKRGNAT 102
+L +LD+Q+ NAT
Sbjct: 525 ILALLDEQSVFPNAT 539
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 115 bits (290), Expect = 2e-31
Identities = 39/82 (47%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 24 EYYYVTSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVE 82
E + + SFEQLCINY NE LQ FN +F EQEEY +EGI W I+F D C++L+E
Sbjct: 469 EIFEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIE 528
Query: 83 GK--PNGLLCVLDDQAKRGNAT 102
P G+L +LD++ AT
Sbjct: 529 RPTNPPGVLALLDEECWFPKAT 550
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.5 bits (73), Expect = 0.028
Identities = 14/85 (16%), Positives = 26/85 (30%), Gaps = 3/85 (3%)
Query: 12 NVTRRDTQELKHEY--YYVTSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHI 69
+V + K ++ +++ E LQ Q + + I+ R
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 70 EFSDNTLCLQLVEGKPNGLLCVLDD 94
L + N LL VL +
Sbjct: 229 SIQAELRRLLKSKPYENCLL-VLLN 252
>2i6j_A Ssoptp, sulfolobus solfataricus protein tyrosine phosphatase; PTP
domain, hydrolase; 1.66A {Sulfolobus solfataricus} PDB:
2i6i_A 2i6m_A 3ro1_A* 2i6o_A* 2dxp_A* 2i6p_A*
Length = 161
Score = 26.0 bits (57), Expect = 3.2
Identities = 7/34 (20%), Positives = 11/34 (32%)
Query: 40 NEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSD 73
E + + Y K G++ HI D
Sbjct: 36 PEDWEIEESWGDKDYYLSILKKNGLQPLHIPIPD 69
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 25.1 bits (54), Expect = 6.5
Identities = 14/68 (20%), Positives = 20/68 (29%), Gaps = 13/68 (19%)
Query: 8 EQDTNVTRRDTQELKHEYYYVTSFEQLCINYANEHL-QYYFNQHVFQYEQEEYNKEGIRW 66
EQ + D E ++ A + L ++ Q EQ E NK R
Sbjct: 93 EQRKRLQELDAASKVME-------QEW-REKAKKDLEEWNQRQS----EQVEKNKINNRI 140
Query: 67 RHIEFSDN 74
F
Sbjct: 141 ADKAFYQQ 148
>1fpz_A Cyclin-dependent kinase inhibitor 3; alpha-beta sandwich,
hydrolase; 2.00A {Homo sapiens} SCOP: c.45.1.1 PDB:
1fq1_A*
Length = 212
Score = 25.0 bits (54), Expect = 7.3
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 54 YEQEEYNKEGIRWRHIEFSDNT 75
+ Y + GI H +D
Sbjct: 91 NLLDLYQQCGIITHHHPIADGG 112
>3i6y_A Esterase APC40077; lipase, structural genomics, PSI-2, PR structure
initiative, midwest center for structural genomic
hydrolase; HET: MSE; 1.75A {Oleispira antarctica} PDB:
3s8y_A
Length = 280
Score = 24.9 bits (54), Expect = 8.3
Identities = 8/42 (19%), Positives = 19/42 (45%)
Query: 2 FCVRATEQDTNVTRRDTQELKHEYYYVTSFEQLCINYANEHL 43
A+ + + R + H YY++ SF + + + + +L
Sbjct: 237 LEAAASSNNYPLELRSHEGYDHSYYFIASFIEDHLRFHSNYL 278
>1zld_A PTR TOXA, PTR necrosis toxin; beta-sandwich, RGD-motif; 1.65A
{Pyrenophora tritici-repentis} PDB: 1zle_A
Length = 118
Score = 24.6 bits (53), Expect = 8.9
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 7 TEQDTNVTRRDTQELKHEYYYVTSFEQLCIN 37
T+ D VTR D EL +Y + C+N
Sbjct: 72 TQWDNTVTRGDVYELFGDYALIQGRGSFCLN 102
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.137 0.423
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,901,522
Number of extensions: 98059
Number of successful extensions: 211
Number of sequences better than 10.0: 1
Number of HSP's gapped: 199
Number of HSP's successfully gapped: 29
Length of query: 128
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 45
Effective length of database: 4,384,350
Effective search space: 197295750
Effective search space used: 197295750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.4 bits)