RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14368
         (128 letters)



>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
           discoideum, class-I myosin MyoE [TaxId: 44689]}
          Length = 684

 Score = 76.3 bits (187), Expect = 5e-18
 Identities = 34/88 (38%), Positives = 51/88 (57%)

Query: 24  EYYYVTSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG 83
           E +   SFEQL IN+ NE LQ  F +   + EQEEY +EGI W++IE+ +N    +L+E 
Sbjct: 383 EVFQNNSFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEK 442

Query: 84  KPNGLLCVLDDQAKRGNATLRYENMKLY 111
           KP GL+ +LD+      +T +     + 
Sbjct: 443 KPIGLISLLDEACLIAKSTDQTFLDSIC 470


>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
           (Gallus gallus), pectoral muscle [TaxId: 9031]}
          Length = 794

 Score = 72.8 bits (178), Expect = 8e-17
 Identities = 38/88 (43%), Positives = 50/88 (56%)

Query: 24  EYYYVTSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG 83
           E +   SFEQLCIN+ NE LQ +FN H+F  EQEEY KEGI W  I+F  +      +  
Sbjct: 419 EIFDFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWEFIDFGMDLAACIELIE 478

Query: 84  KPNGLLCVLDDQAKRGNATLRYENMKLY 111
           KP G+  +L+++     AT      KLY
Sbjct: 479 KPMGIFSILEEECMFPKATDTSFKNKLY 506


>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
           scallop (Aequipecten irradians) [TaxId: 31199]}
          Length = 789

 Score = 71.7 bits (175), Expect = 2e-16
 Identities = 39/88 (44%), Positives = 51/88 (57%)

Query: 24  EYYYVTSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG 83
           E +   SFEQLCINY NE LQ +FN H+F  EQEEY KEGI W  I+F  +      +  
Sbjct: 417 EIFDFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIE 476

Query: 84  KPNGLLCVLDDQAKRGNATLRYENMKLY 111
           KP G+L +L+++     A  +    KLY
Sbjct: 477 KPMGILSILEEECMFPKADDKSFQDKLY 504


>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
           (Gallus gallus), pectoral muscle [TaxId: 9031]}
          Length = 710

 Score = 70.1 bits (171), Expect = 9e-16
 Identities = 41/91 (45%), Positives = 53/91 (58%), Gaps = 3/91 (3%)

Query: 24  EYYYVTSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVE 82
           E + + SFEQLCINY NE LQ  FN  +F  EQEEY +EGI W  I+F  D   C++L+E
Sbjct: 391 EIFEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIE 450

Query: 83  G--KPNGLLCVLDDQAKRGNATLRYENMKLY 111
               P G+L +LD++     AT      KL 
Sbjct: 451 RPTNPPGVLALLDEECWFPKATDTSFVEKLI 481


>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
           (Gallus gallus), Va isoform [TaxId: 9031]}
          Length = 730

 Score = 68.2 bits (166), Expect = 4e-15
 Identities = 41/79 (51%), Positives = 52/79 (65%), Gaps = 1/79 (1%)

Query: 24  EYYYVTSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG 83
           E + + SFEQ CINYANE LQ  FN HVF+ EQEEY KE I W  I+F DN  C+ L+E 
Sbjct: 380 ETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEA 439

Query: 84  KPNGLLCVLDDQAKRGNAT 102
           K  G+L +LD++ K    +
Sbjct: 440 K-MGVLDLLDEECKMPKGS 457


>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
           {Dictyostelium discoideum [TaxId: 44689]}
          Length = 712

 Score = 65.5 bits (159), Expect = 4e-14
 Identities = 42/81 (51%), Positives = 56/81 (69%), Gaps = 2/81 (2%)

Query: 24  EYYYVTSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVE 82
           E + V SFEQLCINY NE LQ +FN H+F+ EQEEY KE I W  I+F  D+   + L++
Sbjct: 412 EIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLID 471

Query: 83  G-KPNGLLCVLDDQAKRGNAT 102
           G +P G+L +LD+Q+   NAT
Sbjct: 472 GRQPPGILALLDEQSVFPNAT 492


>d1pv1a_ c.69.1.34 (A:) Hypothetical esterase YJL068C {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 299

 Score = 25.6 bits (55), Expect = 1.9
 Identities = 9/39 (23%), Positives = 16/39 (41%)

Query: 5   RATEQDTNVTRRDTQELKHEYYYVTSFEQLCINYANEHL 43
           +AT     V  +      H YY+V++F      +   +L
Sbjct: 258 KATSWQDYVEIKKVHGFDHSYYFVSTFVPEHAEFHARNL 296


>d1e93a_ e.5.1.1 (A:) Catalase I {Proteus mirabilis [TaxId: 584]}
          Length = 476

 Score = 24.9 bits (54), Expect = 3.3
 Identities = 8/39 (20%), Positives = 10/39 (25%)

Query: 36  INYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDN 74
           I Y       +  Q  F+            W H E  D 
Sbjct: 377 ITYEPNSGGVFQEQPDFKEPPLSIEGAADHWNHREDEDY 415


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.137    0.423 

Gapped
Lambda     K      H
   0.267   0.0521    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 474,990
Number of extensions: 20261
Number of successful extensions: 68
Number of sequences better than 10.0: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 13
Length of query: 128
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 53
Effective length of database: 1,377,846
Effective search space: 73025838
Effective search space used: 73025838
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (22.8 bits)