BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1437
(232 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Y5C|A Chain A, Structure Of Human Ferredoxin 2 (Fdx2)in Complex With
2fe2s Cluster
pdb|2Y5C|B Chain B, Structure Of Human Ferredoxin 2 (Fdx2)in Complex With
2fe2s Cluster
Length = 109
Score = 158 bits (399), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 68/106 (64%), Positives = 89/106 (83%)
Query: 115 EIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDA 174
++VN+ F+D+ G+R + G+VGDNVL+LA R+ + +EGACEASLAC+TCHVYV ++LD
Sbjct: 4 DVVNVVFVDRSGQRIPVSGRVGDNVLHLAQRHGVDLEGACEASLACSTCHVYVSEDHLDL 63
Query: 175 LPPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLPKATR 220
LPP EE+EDD+LD+AP L++NSRLGCQI+LT ELEG E TLPK TR
Sbjct: 64 LPPPEEREDDMLDMAPLLQENSRLGCQIVLTPELEGAEFTLPKITR 109
>pdb|2WLB|A Chain A, Adrenodoxin-Like Ferredoxin Etp1fd(516-618) Of
Schizosaccharomyces Pombe Mitochondria
pdb|2WLB|B Chain B, Adrenodoxin-Like Ferredoxin Etp1fd(516-618) Of
Schizosaccharomyces Pombe Mitochondria
Length = 103
Score = 104 bits (259), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 71/100 (71%)
Query: 117 VNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALP 176
+ + F+ +G+ I+G GD++L LAH I +EGACE S+AC+TCHV V E+ + L
Sbjct: 4 IKVFFVTPEGREIMIEGNEGDSILDLAHANNIDLEGACEGSVACSTCHVIVDPEHYELLD 63
Query: 177 PAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLP 216
P EE E+D+LDLA L++ SRLGCQ++L K+L+GI V +P
Sbjct: 64 PPEEDEEDMLDLAFGLEETSRLGCQVLLRKDLDGIRVRIP 103
>pdb|1L6V|A Chain A, Structure Of Reduced Bovine Adrenodoxin
Length = 128
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 72/114 (63%), Gaps = 3/114 (2%)
Query: 110 PKSEDEIVNITFIDKDGKRREIKGKVGDNVL--YLAHRYEIPMEGACEASLACTTCHVYV 167
SED+I + FI++DG+ KGK+GD++L + + +I GACE +LAC+TCH+
Sbjct: 1 SSSEDKIT-VHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIF 59
Query: 168 KHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLPKATRN 221
+ + L ++E+D+LDLA L D SRLGCQI LTK ++ + V +P A +
Sbjct: 60 EQHIFEKLEAITDEENDMLDLAYGLTDRSRLGCQICLTKAMDNMTVRVPDAVSD 113
>pdb|1CJE|A Chain A, Adrenodoxin From Bovine
pdb|1CJE|B Chain B, Adrenodoxin From Bovine
pdb|1CJE|C Chain C, Adrenodoxin From Bovine
pdb|1CJE|D Chain D, Adrenodoxin From Bovine
Length = 127
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 72/113 (63%), Gaps = 3/113 (2%)
Query: 111 KSEDEIVNITFIDKDGKRREIKGKVGDNVL--YLAHRYEIPMEGACEASLACTTCHVYVK 168
SED+I + FI++DG+ KGK+GD++L + + +I GACE +LAC+TCH+ +
Sbjct: 1 SSEDKIT-VHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFE 59
Query: 169 HEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLPKATRN 221
+ L ++E+D+LDLA L D SRLGCQI LTK ++ + V +P A +
Sbjct: 60 QHIFEKLEAITDEENDMLDLAYGLTDRSRLGCQICLTKAMDNMTVRVPDAVSD 112
>pdb|1L6U|A Chain A, Nmr Structure Of Oxidized Adrenodoxin
Length = 128
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 72/113 (63%), Gaps = 3/113 (2%)
Query: 111 KSEDEIVNITFIDKDGKRREIKGKVGDNVL--YLAHRYEIPMEGACEASLACTTCHVYVK 168
SED+I + FI++DG+ KGK+GD++L + + +I GACE +LAC+TCH+ +
Sbjct: 2 SSEDKIT-VHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFE 60
Query: 169 HEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLPKATRN 221
+ L ++E+D+LDLA L D SRLGCQI LTK ++ + V +P A +
Sbjct: 61 QHIFEKLEAITDEENDMLDLAYGLTDRSRLGCQICLTKAMDNMTVRVPDAVSD 113
>pdb|1E6E|B Chain B, Adrenodoxin ReductaseADRENODOXIN COMPLEX OF MITOCHONDRIAL
P450 Systems
pdb|1E6E|D Chain D, Adrenodoxin ReductaseADRENODOXIN COMPLEX OF MITOCHONDRIAL
P450 Systems
Length = 128
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 72/113 (63%), Gaps = 3/113 (2%)
Query: 111 KSEDEIVNITFIDKDGKRREIKGKVGDNVL--YLAHRYEIPMEGACEASLACTTCHVYVK 168
SED+I + FI++DG+ KGK+GD++L + + +I GACE +LAC+TCH+ +
Sbjct: 2 SSEDKIT-VHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFE 60
Query: 169 HEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLPKATRN 221
+ L ++E+D+LDLA L D SRLGCQI LTK ++ + V +P A +
Sbjct: 61 QHIFEKLEAITDEENDMLDLAYGLTDRSRLGCQICLTKAMDNMTVRVPDAVSD 113
>pdb|3P1M|A Chain A, Crystal Structure Of Human Ferredoxin-1 (Fdx1) In Complex
With Iron- Sulfur Cluster
pdb|3P1M|B Chain B, Crystal Structure Of Human Ferredoxin-1 (Fdx1) In Complex
With Iron- Sulfur Cluster
pdb|3P1M|C Chain C, Crystal Structure Of Human Ferredoxin-1 (Fdx1) In Complex
With Iron- Sulfur Cluster
pdb|3P1M|D Chain D, Crystal Structure Of Human Ferredoxin-1 (Fdx1) In Complex
With Iron- Sulfur Cluster
pdb|3P1M|E Chain E, Crystal Structure Of Human Ferredoxin-1 (Fdx1) In Complex
With Iron- Sulfur Cluster
pdb|3P1M|F Chain F, Crystal Structure Of Human Ferredoxin-1 (Fdx1) In Complex
With Iron- Sulfur Cluster
pdb|3P1M|G Chain G, Crystal Structure Of Human Ferredoxin-1 (Fdx1) In Complex
With Iron- Sulfur Cluster
pdb|3P1M|H Chain H, Crystal Structure Of Human Ferredoxin-1 (Fdx1) In Complex
With Iron- Sulfur Cluster
Length = 132
Score = 91.3 bits (225), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 71/111 (63%), Gaps = 3/111 (2%)
Query: 110 PKSEDEIVNITFIDKDGKRREIKGKVGDNVL--YLAHRYEIPMEGACEASLACTTCHVYV 167
SED+I + FI++DG+ KGKVGD++L + + +I GACE +LAC+TCH+
Sbjct: 2 SSSEDKIT-VHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIF 60
Query: 168 KHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLPKA 218
+ + L ++E+D+LDLA L D SRLGCQI LTK ++ + V +P+
Sbjct: 61 EDHIYEKLDAITDEENDMLDLAYGLTDRSRLGCQICLTKSMDNMTVRVPET 111
>pdb|3N9Z|C Chain C, Crystal Structure Of Human Cyp11a1 In Complex With 22-
Hydroxycholesterol
pdb|3N9Z|D Chain D, Crystal Structure Of Human Cyp11a1 In Complex With 22-
Hydroxycholesterol
pdb|3NA1|C Chain C, Crystal Structure Of Human Cyp11a1 In Complex With 20-
Hydroxycholesterol
pdb|3NA1|D Chain D, Crystal Structure Of Human Cyp11a1 In Complex With 20-
Hydroxycholesterol
Length = 123
Score = 90.5 bits (223), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 71/110 (64%), Gaps = 3/110 (2%)
Query: 111 KSEDEIVNITFIDKDGKRREIKGKVGDNVL--YLAHRYEIPMEGACEASLACTTCHVYVK 168
SED+I + FI++DG+ KGKVGD++L + + +I GACE +LAC+TCH+ +
Sbjct: 1 SSEDKIT-VHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFE 59
Query: 169 HEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLPKA 218
+ L ++E+D+LDLA L D SRLGCQI LTK ++ + V +P+
Sbjct: 60 DHIYEKLDAITDEENDMLDLAYGLTDRSRLGCQICLTKSMDNMTVRVPET 109
>pdb|3N9Y|C Chain C, Crystal Structure Of Human Cyp11a1 In Complex With
Cholesterol
pdb|3N9Y|D Chain D, Crystal Structure Of Human Cyp11a1 In Complex With
Cholesterol
Length = 114
Score = 90.1 bits (222), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 71/110 (64%), Gaps = 3/110 (2%)
Query: 111 KSEDEIVNITFIDKDGKRREIKGKVGDNVL--YLAHRYEIPMEGACEASLACTTCHVYVK 168
SED+I + FI++DG+ KGKVGD++L + + +I GACE +LAC+TCH+ +
Sbjct: 1 SSEDKIT-VHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFE 59
Query: 169 HEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLPKA 218
+ L ++E+D+LDLA L D SRLGCQI LTK ++ + V +P+
Sbjct: 60 DHIYEKLDAITDEENDMLDLAYGLTDRSRLGCQICLTKSMDNMTVRVPET 109
>pdb|2BT6|A Chain A, Ru(Bpy)2(Mbpy)-Modified Bovine Adrenodoxin
pdb|2BT6|B Chain B, Ru(Bpy)2(Mbpy)-Modified Bovine Adrenodoxin
Length = 108
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 68/107 (63%), Gaps = 2/107 (1%)
Query: 112 SEDEIVNITFIDKDGKRREIKGKVGDNVL--YLAHRYEIPMEGACEASLACTTCHVYVKH 169
S + + + FI++DG+ KGK+GD++L + + +I GACE +LAC+TCH+ +
Sbjct: 2 SSGDKITVHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQ 61
Query: 170 EYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLP 216
+ L ++E+D+LDLA L D SRLGCQI LTK ++ + V +P
Sbjct: 62 HIFEKLEAITDEENDMLDLAYGLTDRSRLGCQICLTKAMDNMTVRVP 108
>pdb|1AYF|A Chain A, Bovine Adrenodoxin (oxidized)
pdb|1AYF|B Chain B, Bovine Adrenodoxin (oxidized)
Length = 105
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 66/102 (64%), Gaps = 2/102 (1%)
Query: 117 VNITFIDKDGKRREIKGKVGDNVL--YLAHRYEIPMEGACEASLACTTCHVYVKHEYLDA 174
+ + FI++DG+ KGK+GD++L + + +I GACE +LAC+TCH+ + +
Sbjct: 4 ITVHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHIFEK 63
Query: 175 LPPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLP 216
L ++E+D+LDLA L D SRLGCQI LTK ++ + V +P
Sbjct: 64 LEAITDEENDMLDLAYGLTDRSRLGCQICLTKAMDNMTVRVP 105
>pdb|2JQR|B Chain B, Solution Model Of Crosslinked Complex Of Cytochrome C And
Adrenodoxin
Length = 105
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 65/102 (63%), Gaps = 2/102 (1%)
Query: 117 VNITFIDKDGKRREIKGKVGDNVL--YLAHRYEIPMEGACEASLACTTCHVYVKHEYLDA 174
+ + FI++DG+ KGK+GD++L + + +I GACE +LAC+TCH+ + +
Sbjct: 4 ITVHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHIFEK 63
Query: 175 LPPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLP 216
L ++E+D+LD A L D SRLGCQI LTK ++ + V +P
Sbjct: 64 LEAITDEENDMLDCAYGLTDRSRLGCQISLTKAMDNMTVRVP 105
>pdb|1OQQ|A Chain A, Crystal Structure Of C73sC85S MUTANT OF PUTIDAREDOXIN, A
[2FE-2s] Ferredoxin From Pseudomonas Putida, At 1.47a
Resolution
pdb|1OQQ|B Chain B, Crystal Structure Of C73sC85S MUTANT OF PUTIDAREDOXIN, A
[2FE-2s] Ferredoxin From Pseudomonas Putida, At 1.47a
Resolution
pdb|1XLN|A Chain A, Crystal Structure Of Oxidized C73sC85S PUTIDAREDOXIN, A
[2fe-2s] Ferredoxin From Pseudomonas Putida
pdb|1XLN|B Chain B, Crystal Structure Of Oxidized C73sC85S PUTIDAREDOXIN, A
[2fe-2s] Ferredoxin From Pseudomonas Putida
pdb|1XLO|A Chain A, Structure Of Reduced C73s/c85s Putidaredoxin, A [2fe-2s]
Ferredoxin From Pseudomonas Putida
pdb|1XLO|B Chain B, Structure Of Reduced C73s/c85s Putidaredoxin, A [2fe-2s]
Ferredoxin From Pseudomonas Putida
pdb|3LB8|C Chain C, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
pdb|3LB8|D Chain D, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
Length = 106
Score = 77.0 bits (188), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 59/100 (59%), Gaps = 2/100 (2%)
Query: 119 ITFIDKDGKRREIKGKVGDNVLYLAHRYEI-PMEGACEASLACTTCHVYVKHEYLDALPP 177
+ ++ DG RRE+ G +++ A I + G C S +C TCHVYV + D +P
Sbjct: 3 VVYVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVPA 62
Query: 178 AEEKEDDLLD-LAPFLKDNSRLGCQIILTKELEGIEVTLP 216
A E+E +L+ + LK NSRL CQII+T EL+GI V +P
Sbjct: 63 ANEREIGMLESVTAELKPNSRLSCQIIMTPELDGIVVDVP 102
>pdb|1GPX|A Chain A, C85s Gapdx, Nmr, 20 Structures
Length = 106
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 59/100 (59%), Gaps = 2/100 (2%)
Query: 119 ITFIDKDGKRREIKGKVGDNVLYLAHRYEI-PMEGACEASLACTTCHVYVKHEYLDALPP 177
+ ++ DG RRE+ G +++ A I + G C S +C TCHVYV + D +P
Sbjct: 3 VVYVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVPA 62
Query: 178 AEEKEDDLLD-LAPFLKDNSRLGCQIILTKELEGIEVTLP 216
A E+E +L+ + LK NSRL CQII+T EL+GI V +P
Sbjct: 63 ANEREIGMLECVTAELKPNSRLSCQIIMTPELDGIVVDVP 102
>pdb|1OQR|A Chain A, Crystal Structure Of C73s Mutant Of Putidaredoxin, A [2fe-
2s] Ferredoxin From Pseudomonas Putida, At 1.65a
Resolution
pdb|1OQR|B Chain B, Crystal Structure Of C73s Mutant Of Putidaredoxin, A [2fe-
2s] Ferredoxin From Pseudomonas Putida, At 1.65a
Resolution
pdb|1OQR|C Chain C, Crystal Structure Of C73s Mutant Of Putidaredoxin, A [2fe-
2s] Ferredoxin From Pseudomonas Putida, At 1.65a
Resolution
pdb|1XLP|A Chain A, Structure Of Oxidized C73s Putidaredoxin From Pseudomonas
Putida
pdb|1XLP|B Chain B, Structure Of Oxidized C73s Putidaredoxin From Pseudomonas
Putida
pdb|1XLP|C Chain C, Structure Of Oxidized C73s Putidaredoxin From Pseudomonas
Putida
pdb|1XLQ|A Chain A, Crystal Structure Of Reduced C73s Putidaredoxin From
Pseudomonas Putida
pdb|1XLQ|B Chain B, Crystal Structure Of Reduced C73s Putidaredoxin From
Pseudomonas Putida
pdb|1XLQ|C Chain C, Crystal Structure Of Reduced C73s Putidaredoxin From
Pseudomonas Putida
Length = 106
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 59/100 (59%), Gaps = 2/100 (2%)
Query: 119 ITFIDKDGKRREIKGKVGDNVLYLAHRYEI-PMEGACEASLACTTCHVYVKHEYLDALPP 177
+ ++ DG RRE+ G +++ A I + G C S +C TCHVYV + D +P
Sbjct: 3 VVYVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVPA 62
Query: 178 AEEKEDDLLD-LAPFLKDNSRLGCQIILTKELEGIEVTLP 216
A E+E +L+ + LK NSRL CQII+T EL+GI V +P
Sbjct: 63 ANEREIGMLESVTAELKPNSRLCCQIIMTPELDGIVVDVP 102
>pdb|3HUI|A Chain A, Crystal Structure Of The Mutant A105r Of [2fe-2s]
Ferredoxin In The Class I Cyp199a2 System From
Rhodopseudomonas Palustris
Length = 126
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 116 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIP-MEGACEASLACTTCHVYVKHEYLDA 174
+ I F+D G+ R ++ + G V+ A R IP +E C + AC TCHVYV + +
Sbjct: 21 MAKINFVDHTGETRTVEVEEGATVMEAAIRNAIPGVEAECGGACACATCHVYVDEAWREK 80
Query: 175 LPPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLPKATR 220
+ E+D+LD ++ NSRL CQI ++ EL+G+ VT P+ R
Sbjct: 81 VGGPSPMEEDMLDFGYDVRPNSRLSCQIKVSNELDGLIVTTPERQR 126
>pdb|1R7S|A Chain A, Putidaredoxin (Fe2s2 Ferredoxin), C73g Mutant
pdb|1R7S|B Chain B, Putidaredoxin (Fe2s2 Ferredoxin), C73g Mutant
pdb|1R7S|C Chain C, Putidaredoxin (Fe2s2 Ferredoxin), C73g Mutant
Length = 106
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 59/100 (59%), Gaps = 2/100 (2%)
Query: 119 ITFIDKDGKRREIKGKVGDNVLYLAHRYEI-PMEGACEASLACTTCHVYVKHEYLDALPP 177
+ ++ DG RRE+ G +++ A I + G C S +C TCHVYV + D +P
Sbjct: 3 VVYVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVPA 62
Query: 178 AEEKEDDLLD-LAPFLKDNSRLGCQIILTKELEGIEVTLP 216
A E+E +L+ + LK NSRL CQII+T EL+GI V +P
Sbjct: 63 ANEREIGMLEGVTAELKPNSRLCCQIIMTPELDGIVVDVP 102
>pdb|1PDX|A Chain A, Putidaredoxin
pdb|1YJI|A Chain A, Rdc-Refined Solution Nmr Structure Of Reduced
Putidaredoxin
pdb|1YJJ|A Chain A, Rdc-Refined Solution Nmr Structure Of Oxidized
Putidaredoxin
Length = 106
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 59/100 (59%), Gaps = 2/100 (2%)
Query: 119 ITFIDKDGKRREIKGKVGDNVLYLAHRYEI-PMEGACEASLACTTCHVYVKHEYLDALPP 177
+ ++ DG RRE+ G +++ A I + G C S +C TCHVYV + D +P
Sbjct: 3 VVYVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVPA 62
Query: 178 AEEKEDDLLD-LAPFLKDNSRLGCQIILTKELEGIEVTLP 216
A E+E +L+ + LK NSRL CQII+T EL+GI V +P
Sbjct: 63 ANEREIGMLECVTAELKPNSRLCCQIIMTPELDGIVVDVP 102
>pdb|1PUT|A Chain A, An Nmr-Derived Model For The Solution Structure Of
Oxidized Putidaredoxin, A 2fe, 2-S Ferredoxin From
Pseudomonas
Length = 106
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 59/100 (59%), Gaps = 2/100 (2%)
Query: 119 ITFIDKDGKRREIKGKVGDNVLYLAHRYEI-PMEGACEASLACTTCHVYVKHEYLDALPP 177
+ ++ DG RR++ G +++ A I + G C S +C TCHVYV + D +P
Sbjct: 3 VVYVSHDGTRRQLDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVPA 62
Query: 178 AEEKEDDLLD-LAPFLKDNSRLGCQIILTKELEGIEVTLP 216
A E+E +L+ + LK NSRL CQII+T EL+GI V +P
Sbjct: 63 ANEREIGMLECVTAELKPNSRLCCQIIMTPELDGIVVDVP 102
>pdb|1E9M|A Chain A, Ferredoxin Vi From Rhodobacter Capsulatus
pdb|1UWM|A Chain A, Reduced Ferredoxin 6 From Rhodobacter Capsulatus
Length = 106
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 58/102 (56%), Gaps = 4/102 (3%)
Query: 119 ITFIDKDGKRREIKGKVGDNVLYLAHRYEIP-MEGACEASLACTTCHVYVKHEYLDALPP 177
I FI+ +G R E++ K G V+ A +P ++ C + AC+TCH YV ++D LP
Sbjct: 3 IIFIEHNGTRHEVEAKPGLTVMEAARDNGVPGIDADCGGACACSTCHAYVDPAWVDKLPK 62
Query: 178 AEEKEDDLLDLA--PFLKDNSRLGCQIILTKELEGIEVTLPK 217
A E D++D A P SRL CQI +T L+G+ V LP+
Sbjct: 63 ALPTETDMIDFAYEPN-PATSRLTCQIKVTSLLDGLVVHLPE 103
>pdb|1I7H|A Chain A, Crystal Sturcuture Of Fdx
pdb|1I7H|B Chain B, Crystal Sturcuture Of Fdx
pdb|1I7H|C Chain C, Crystal Sturcuture Of Fdx
Length = 111
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 55/91 (60%), Gaps = 3/91 (3%)
Query: 131 IKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAP 190
++ G+ +L A R I +E ACE S ACTTCH V+ E D+LP + E+EDD+LD A
Sbjct: 19 LEANSGETILDAALRNGIEIEHACEKSCACTTCHCIVR-EGFDSLPESSEQEDDMLDKAW 77
Query: 191 FLKDNSRLGCQIILTKELEGIEVTLPKATRN 221
L+ SRL CQ +T E + V +P+ T N
Sbjct: 78 GLEPESRLSCQARVTD--EDLVVEIPRYTIN 106
>pdb|3LXF|A Chain A, Crystal Structure Of [2fe-2s] Ferredoxin Arx From
Novosphingobium Aromaticivorans
pdb|3LXF|B Chain B, Crystal Structure Of [2fe-2s] Ferredoxin Arx From
Novosphingobium Aromaticivorans
pdb|3LXF|C Chain C, Crystal Structure Of [2fe-2s] Ferredoxin Arx From
Novosphingobium Aromaticivorans
pdb|3LXF|D Chain D, Crystal Structure Of [2fe-2s] Ferredoxin Arx From
Novosphingobium Aromaticivorans
pdb|3LXF|E Chain E, Crystal Structure Of [2fe-2s] Ferredoxin Arx From
Novosphingobium Aromaticivorans
Length = 104
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 119 ITFIDKDGKRREIKGKVGDNVLYLAHRYEIP-MEGACEASLACTTCHVYVKHEYLDALPP 177
I +DG R EI+ + G +++ I + C +C TCHV V + D LP
Sbjct: 3 ILVTTRDGTRTEIQAEPGLSLMEALRDAGIDELLALCGGCCSCATCHVLVAPAFADRLPA 62
Query: 178 AEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEV 213
E+DLLD + +SRL CQI + +LEG+EV
Sbjct: 63 LSGDENDLLDSSDHRTPHSRLSCQITINDKLEGLEV 98
>pdb|3NA0|C Chain C, Crystal Structure Of Human Cyp11a1 In Complex With 20,22-
Dihydroxycholesterol
pdb|3NA0|D Chain D, Crystal Structure Of Human Cyp11a1 In Complex With 20,22-
Dihydroxycholesterol
Length = 68
Score = 58.9 bits (141), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/51 (50%), Positives = 35/51 (68%)
Query: 152 GACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQI 202
GACE +LAC+TCH+ + + L ++E+D+LDLA L D SRLGCQI
Sbjct: 17 GACEGTLACSTCHLIFEDHIYEKLDAITDEENDMLDLAYGLTDRSRLGCQI 67
>pdb|3AH7|A Chain A, Crystal Structure Of The Isc-Like [2fe-2s] Ferredoxin
(Fdxb) From Pseudomonas Putida Jcm 20004
Length = 113
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 56/91 (61%), Gaps = 3/91 (3%)
Query: 131 IKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAP 190
++ K G N+L LAH + I ME AC ACTTCH V+ + D+L A+E E+D+LD A
Sbjct: 19 VEVKPGTNILELAHDHHIEMESACGGVKACTTCHCIVRKGF-DSLEEADELEEDMLDKAW 77
Query: 191 FLKDNSRLGCQIILTKELEGIEVTLPKATRN 221
L+ SRLGCQ+ + E IE+ PK + N
Sbjct: 78 GLEAQSRLGCQVFVADEDLTIEI--PKYSLN 106
>pdb|1B9R|A Chain A, Terpredoxin From Pseudomonas Sp
Length = 105
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 119 ITFIDKDGKRREIKGKVGDNVLYLAHRYEIP-MEGACEASLACTTCHVYVKHEYLDALPP 177
+ FID+ + + G +++ +A + +P + C S C TC + ++ +++ +
Sbjct: 3 VVFIDEQSGEYAVDAQDGQSLMEVATQNGVPGIVAECGGSCVCATCRIEIEDAWVEIVGE 62
Query: 178 AEEKEDDLL-DLAPFLKDNSRLGCQIILTKELEGIEVTLP 216
A E+DLL + +RL CQ+ + ++G+ V +P
Sbjct: 63 ANPDENDLLQSTGEPMTAGTRLSCQVFIDPSMDGLIVRVP 102
>pdb|1S9V|A Chain A, Crystal Structure Of Hla-Dq2 Complexed With Deamidated
Gliadin Peptide
pdb|1S9V|D Chain D, Crystal Structure Of Hla-Dq2 Complexed With Deamidated
Gliadin Peptide
Length = 193
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 138 NVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKED 183
N+ +L++ + + EG E S + H + K YL LP AEE D
Sbjct: 120 NITWLSNGHSV-TEGVSETSFLSKSDHSFFKISYLTLLPSAEESYD 164
>pdb|4GG6|A Chain A, Protein Complex
pdb|4GG6|C Chain C, Protein Complex
Length = 192
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 138 NVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKED 183
N+ +L++ + + EG E S + H + K YL LP A+E D
Sbjct: 121 NITWLSNGHSV-TEGVSETSFLSKSDHSFFKISYLTFLPSADEIYD 165
>pdb|2NNA|A Chain A, Structure Of The Mhc Class Ii Molecule Hla-Dq8 Bound With
A Deamidated Gluten Peptide
Length = 184
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 138 NVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKED 183
N+ +L++ + + EG E S + H + K YL LP A+E D
Sbjct: 121 NITWLSNGHSV-TEGVSETSFLSKSDHSFFKISYLTFLPSADEIYD 165
>pdb|4D8P|A Chain A, Structural And Functional Studies Of The Trans-Encoded
Hla-Dq2.3 (Dqa103:01DQB102:01) MOLECULE
pdb|4D8P|C Chain C, Structural And Functional Studies Of The Trans-Encoded
Hla-Dq2.3 (Dqa103:01DQB102:01) MOLECULE
Length = 213
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 138 NVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKED 183
N+ +L++ + + EG E S + H + K YL LP A+E D
Sbjct: 121 NITWLSNGHSV-TEGVSETSFLSKSDHSFFKISYLTFLPSADEIYD 165
>pdb|2JQ9|A Chain A, Vps4a Mit-Chmp1a Complex
pdb|2K3W|A Chain A, Nmr Structure Of Vps4a-Mit-Chmp6
Length = 84
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 5 EEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETAN--SSSDENVAAWRQKAQQYLNR 62
++ I+ A + D+ E A YQ A + L + SD+ + R K QYL+R
Sbjct: 7 QKAIDLVTKATEEDKAKNYEEALRLYQHAVEYFLHAIKYEAHSDKAKESIRAKCVQYLDR 66
Query: 63 AEVLKD 68
AE LKD
Sbjct: 67 AEKLKD 72
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 104 EYEWQDPKSEDEIVNITFIDKDGKRREIKGKVGDNVLYLAHR----YEIPMEGACEASL- 158
EY+ Q + ED++ N+ +D E+ GD+ YL+ R Y + + A E SL
Sbjct: 77 EYDLQ--RCEDDLRNVGPVDAQVYLEEMSWNEGDHSFYLSCRCGGKYSVSKDEAEEVSLI 134
Query: 159 ACTTCHVYVK 168
+C TC + ++
Sbjct: 135 SCDTCSLIIE 144
>pdb|1YXR|A Chain A, Nmr Structure Of Vps4a Mit Domain
Length = 77
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 5 EEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETAN--SSSDENVAAWRQKAQQYLNR 62
++ I+ A + D+ E A YQ A + L + SD+ + R K QYL+R
Sbjct: 7 QKAIDLVTKATEEDKAKNYEEALRLYQHAVEYFLHAIKYEAHSDKAKESIRAKCVQYLDR 66
Query: 63 AEVLKDKIQ 71
AE LKD ++
Sbjct: 67 AEKLKDYLR 75
>pdb|2CPT|A Chain A, Solution Structure Of Mit Domain From Human Skd1
Length = 117
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 5 EEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETAN--SSSDENVAAWRQKAQQYLNR 62
++ I+ A A + D+ E A YQ A ++ L + D+ + R K +YL+R
Sbjct: 16 QKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDR 75
Query: 63 AEVLKDKIQVMFLRN 77
AE LK+ +L+N
Sbjct: 76 AEKLKE-----YLKN 85
>pdb|2JQH|A Chain A, Vps4b Mit
pdb|2JQK|A Chain A, Vps4b Mit-Chmp2b Complex
Length = 89
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 5 EEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETAN--SSSDENVAAWRQKAQQYLNR 62
++ I+ A A + D+ E A YQ A ++ L + D+ + R K +YL+R
Sbjct: 12 QKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDR 71
Query: 63 AEVLKDKIQVMFLRN 77
AE LK+ +L+N
Sbjct: 72 AEKLKE-----YLKN 81
>pdb|1L5P|A Chain A, Crystal Structure Of Trichomonas Vaginalis Ferredoxin
pdb|1L5P|B Chain B, Crystal Structure Of Trichomonas Vaginalis Ferredoxin
pdb|1L5P|C Chain C, Crystal Structure Of Trichomonas Vaginalis Ferredoxin
Length = 93
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 15/92 (16%)
Query: 124 KDGKRREIKGKVGDNVLY--LAHRYEIPMEGACEASLACTTC---HVYVKHEYLDALPPA 178
K G ++++K + D L+ L + + C+ + AC C HV K + A
Sbjct: 7 KGGVKKQLKFE-DDQTLFTVLTEAGLMSADDTCQGNKACGKCICKHVSGK------VAAA 59
Query: 179 EEKEDDLLDLAPFLKDNSRLGCQIILTKELEG 210
E+ E + L+ P N+RL C I L+ E +G
Sbjct: 60 EDDEKEFLEDQPA---NARLACAITLSGENDG 88
>pdb|1WR0|A Chain A, Structural Characterization Of The Mit Domain From Human
Vps4b
Length = 81
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 5 EEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETAN--SSSDENVAAWRQKAQQYLNR 62
++ I+ A A + D+ E A YQ A ++ L + D+ + R K +YL+R
Sbjct: 13 QKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDR 72
Query: 63 AEVLKDKIQ 71
AE LK+ ++
Sbjct: 73 AEKLKEYLK 81
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,131,992
Number of Sequences: 62578
Number of extensions: 282733
Number of successful extensions: 837
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 791
Number of HSP's gapped (non-prelim): 51
length of query: 232
length of database: 14,973,337
effective HSP length: 96
effective length of query: 136
effective length of database: 8,965,849
effective search space: 1219355464
effective search space used: 1219355464
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)