Query psy1437
Match_columns 232
No_of_seqs 280 out of 1469
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 18:07:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1437.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1437hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3309|consensus 100.0 4.3E-36 9.2E-41 238.1 10.8 126 105-232 34-159 (159)
2 PLN02593 adrenodoxin-like ferr 100.0 1.7E-33 3.7E-38 219.0 12.7 116 117-232 1-117 (117)
3 PTZ00490 Ferredoxin superfamil 100.0 2.4E-28 5.2E-33 195.5 13.1 109 114-222 33-142 (143)
4 TIGR02007 fdx_isc ferredoxin, 99.9 1.1E-22 2.4E-27 156.6 11.0 95 123-222 12-106 (110)
5 cd02681 MIT_calpain7_1 MIT: do 99.9 5.2E-22 1.1E-26 142.8 9.0 71 2-72 1-73 (76)
6 COG0633 Fdx Ferredoxin [Energy 99.9 9.3E-22 2E-26 149.6 9.9 100 116-218 1-101 (102)
7 cd02683 MIT_1 MIT: domain cont 99.9 3E-21 6.6E-26 139.5 10.4 74 3-76 2-76 (77)
8 TIGR02008 fdx_plant ferredoxin 99.8 2.3E-20 5E-25 140.6 9.1 95 116-221 2-96 (97)
9 cd02682 MIT_AAA_Arch MIT: doma 99.8 4E-20 8.8E-25 132.2 9.3 68 3-70 2-70 (75)
10 cd02684 MIT_2 MIT: domain cont 99.8 6.6E-20 1.4E-24 131.9 9.3 70 4-73 3-73 (75)
11 CHL00134 petF ferredoxin; Vali 99.8 2.7E-19 5.9E-24 135.3 9.4 94 117-221 4-98 (99)
12 cd02677 MIT_SNX15 MIT: domain 99.8 6.1E-19 1.3E-23 126.8 9.3 68 2-69 1-69 (75)
13 cd02678 MIT_VPS4 MIT: domain c 99.8 8.1E-19 1.8E-23 126.2 9.4 72 2-73 1-73 (75)
14 PF04212 MIT: MIT (microtubule 99.8 2E-18 4.3E-23 122.0 10.1 68 3-70 1-69 (69)
15 PLN03136 Ferredoxin; Provision 99.8 2.5E-18 5.5E-23 138.5 9.2 93 116-220 54-146 (148)
16 PTZ00038 ferredoxin; Provision 99.7 3.6E-18 7.8E-23 142.5 8.6 94 116-221 95-188 (191)
17 TIGR01941 nqrF NADH:ubiquinone 99.7 6.7E-18 1.5E-22 156.5 10.5 94 117-218 30-123 (405)
18 KOG0739|consensus 99.7 6.1E-18 1.3E-22 149.2 9.1 74 2-75 5-80 (439)
19 cd02656 MIT MIT: domain contai 99.7 1.8E-17 4E-22 119.0 9.0 70 3-72 2-72 (75)
20 PRK10713 2Fe-2S ferredoxin Yfa 99.7 1.9E-17 4.1E-22 121.6 9.0 83 116-215 1-84 (84)
21 cd02680 MIT_calpain7_2 MIT: do 99.7 5.3E-17 1.2E-21 116.3 8.6 65 4-71 3-71 (75)
22 smart00745 MIT Microtubule Int 99.7 2E-16 4.2E-21 114.0 10.0 70 2-71 3-73 (77)
23 PRK05464 Na(+)-translocating N 99.7 1.9E-16 4.1E-21 147.0 10.7 92 116-217 35-126 (409)
24 cd00207 fer2 2Fe-2S iron-sulfu 99.7 2E-16 4.4E-21 114.7 7.7 84 119-214 1-84 (84)
25 COG2871 NqrF Na+-transporting 99.7 1.4E-16 3E-21 139.3 6.8 96 117-222 37-132 (410)
26 COG3894 Uncharacterized metal- 99.6 4.6E-16 1E-20 144.1 6.1 91 116-220 1-91 (614)
27 PRK07609 CDP-6-deoxy-delta-3,4 99.6 1.2E-15 2.5E-20 138.0 8.5 92 117-220 3-94 (339)
28 PRK11872 antC anthranilate dio 99.6 1.8E-15 3.8E-20 137.3 9.2 92 118-218 4-95 (340)
29 PF00111 Fer2: 2Fe-2S iron-sul 99.6 1.5E-15 3.3E-20 109.1 5.8 75 123-205 2-78 (78)
30 PRK05713 hypothetical protein; 99.6 3E-15 6.4E-20 134.2 7.2 80 124-216 6-85 (312)
31 TIGR02160 PA_CoA_Oxy5 phenylac 99.5 7.4E-14 1.6E-18 126.8 8.4 90 115-215 261-351 (352)
32 PRK10684 HCP oxidoreductase, N 99.5 1E-13 2.3E-18 125.2 8.5 86 114-213 246-331 (332)
33 KOG4509|consensus 99.3 4.9E-12 1.1E-16 103.9 7.2 83 3-85 11-95 (247)
34 PF13510 Fer2_4: 2Fe-2S iron-s 98.9 2.4E-09 5.2E-14 78.2 4.5 70 114-215 1-79 (82)
35 PRK07569 bidirectional hydroge 98.8 7.6E-09 1.6E-13 89.5 6.5 71 116-217 3-78 (234)
36 PRK08166 NADH dehydrogenase su 98.6 9.7E-08 2.1E-12 96.4 7.4 76 116-217 1-81 (847)
37 PTZ00305 NADH:ubiquinone oxido 98.1 5.2E-06 1.1E-10 73.7 5.8 47 117-168 69-121 (297)
38 PRK06259 succinate dehydrogena 98.1 4.8E-06 1E-10 79.1 5.3 60 129-217 23-88 (486)
39 PRK12814 putative NADPH-depend 97.9 2E-05 4.4E-10 77.6 5.8 71 116-217 3-78 (652)
40 PRK09908 xanthine dehydrogenas 97.8 5.8E-05 1.3E-09 61.6 6.8 52 115-168 5-57 (159)
41 PRK08493 NADH dehydrogenase su 97.8 2.8E-05 6.1E-10 78.2 6.0 68 116-216 1-73 (819)
42 PRK07860 NADH dehydrogenase su 97.8 4.1E-05 8.8E-10 77.1 6.9 72 114-216 2-78 (797)
43 PF13085 Fer2_3: 2Fe-2S iron-s 97.8 3.2E-05 6.9E-10 59.5 4.8 62 129-216 21-92 (110)
44 PRK08640 sdhB succinate dehydr 97.7 4.8E-05 1E-09 66.6 5.6 62 128-216 24-99 (249)
45 PRK09130 NADH dehydrogenase su 97.7 5E-05 1.1E-09 75.3 6.3 49 116-169 1-54 (687)
46 COG1034 NuoG NADH dehydrogenas 97.7 4.7E-05 1E-09 75.1 5.3 50 116-170 1-55 (693)
47 PRK13552 frdB fumarate reducta 97.7 7.6E-05 1.6E-09 64.9 5.7 62 128-215 25-93 (239)
48 PRK12577 succinate dehydrogena 97.6 0.00017 3.7E-09 65.5 7.6 40 128-168 20-65 (329)
49 cd02679 MIT_spastin MIT: domai 97.6 0.00056 1.2E-08 49.6 8.5 40 2-41 3-42 (79)
50 PRK09129 NADH dehydrogenase su 97.6 0.00011 2.3E-09 73.8 6.4 70 116-216 1-75 (776)
51 PRK11433 aldehyde oxidoreducta 97.5 0.00024 5.3E-09 60.7 6.8 51 117-170 50-102 (217)
52 PRK07570 succinate dehydrogena 97.5 0.00023 5.1E-09 62.3 5.8 58 129-206 22-90 (250)
53 TIGR01973 NuoG NADH-quinone ox 97.5 0.00019 4E-09 70.1 5.7 65 125-216 4-73 (603)
54 PLN00129 succinate dehydrogena 97.4 0.0003 6.5E-09 62.4 6.1 59 130-214 65-131 (276)
55 PRK12385 fumarate reductase ir 97.4 0.00022 4.7E-09 62.3 5.1 61 129-215 27-93 (244)
56 TIGR00384 dhsB succinate dehyd 97.4 0.00014 3E-09 62.4 3.5 41 128-170 16-62 (220)
57 COG3383 Uncharacterized anaero 97.3 0.00027 5.9E-09 69.6 5.3 51 114-170 3-58 (978)
58 TIGR03193 4hydroxCoAred 4-hydr 97.3 0.00046 1E-08 55.8 5.7 44 124-168 6-51 (148)
59 COG0479 FrdB Succinate dehydro 97.0 0.0013 2.8E-08 57.0 5.9 60 129-214 22-88 (234)
60 PRK12576 succinate dehydrogena 97.0 0.0023 5E-08 57.0 7.5 55 114-170 6-72 (279)
61 TIGR03198 pucE xanthine dehydr 97.0 0.0018 4E-08 52.5 5.8 48 119-168 4-53 (151)
62 COG2080 CoxS Aerobic-type carb 97.0 0.0021 4.6E-08 52.2 6.0 49 118-168 3-53 (156)
63 PRK12386 fumarate reductase ir 96.9 0.0023 5E-08 56.1 6.6 40 128-168 21-66 (251)
64 PRK12575 succinate dehydrogena 96.7 0.0014 3E-08 57.0 3.6 62 129-216 25-92 (235)
65 PRK05950 sdhB succinate dehydr 96.5 0.0049 1.1E-07 53.2 5.4 41 128-170 19-66 (232)
66 PF08969 USP8_dimer: USP8 dime 96.4 0.021 4.6E-07 43.9 7.8 71 3-74 34-112 (115)
67 PRK09800 putative hypoxanthine 95.9 0.016 3.5E-07 59.6 6.3 49 119-168 3-52 (956)
68 TIGR02963 xanthine_xdhA xanthi 95.8 0.012 2.6E-07 56.0 4.8 44 124-168 5-51 (467)
69 PF00515 TPR_1: Tetratricopept 94.8 0.074 1.6E-06 31.1 4.4 30 7-36 1-30 (34)
70 TIGR03313 Se_sel_red_Mo probab 94.6 0.053 1.1E-06 56.0 5.3 44 124-168 3-48 (951)
71 KOG2282|consensus 93.9 0.099 2.1E-06 50.0 5.1 55 109-169 26-85 (708)
72 PLN00192 aldehyde oxidase 93.4 0.13 2.8E-06 55.0 5.6 48 119-168 6-56 (1344)
73 TIGR02969 mam_aldehyde_ox alde 93.3 0.11 2.4E-06 55.5 4.9 48 119-168 3-53 (1330)
74 TIGR03311 Se_dep_Molyb_1 selen 93.2 0.12 2.5E-06 52.9 4.8 42 124-168 5-48 (848)
75 PF13176 TPR_7: Tetratricopept 93.1 0.2 4.4E-06 30.1 4.0 26 10-35 2-27 (36)
76 TIGR01372 soxA sarcosine oxida 92.8 0.37 8E-06 50.0 7.8 71 119-216 13-94 (985)
77 KOG2709|consensus 92.5 0.43 9.4E-06 44.8 6.9 71 4-74 19-103 (560)
78 PF13181 TPR_8: Tetratricopept 91.0 0.63 1.4E-05 26.9 4.4 28 9-36 3-30 (34)
79 PF13414 TPR_11: TPR repeat; P 90.7 0.36 7.9E-06 32.5 3.5 32 5-36 1-32 (69)
80 PF07719 TPR_2: Tetratricopept 89.8 0.94 2E-05 25.9 4.4 28 9-36 3-30 (34)
81 PF12063 DUF3543: Domain of un 89.7 0.91 2E-05 39.5 6.0 51 23-73 69-138 (238)
82 KOG2880|consensus 89.6 1.9 4E-05 39.7 8.0 67 3-70 31-104 (424)
83 PF13424 TPR_12: Tetratricopep 88.9 4 8.7E-05 28.0 7.9 34 7-41 5-38 (78)
84 PF13424 TPR_12: Tetratricopep 86.0 1.6 3.6E-05 30.0 4.4 31 7-37 46-76 (78)
85 PF13374 TPR_10: Tetratricopep 85.8 2.2 4.8E-05 25.3 4.5 35 7-41 2-36 (42)
86 PF14938 SNAP: Soluble NSF att 83.7 7.4 0.00016 34.2 8.5 67 6-75 113-180 (282)
87 smart00028 TPR Tetratricopepti 82.6 2.1 4.5E-05 22.5 3.1 26 10-35 4-29 (34)
88 PF12063 DUF3543: Domain of un 80.6 13 0.00027 32.4 8.6 38 3-41 161-199 (238)
89 cd09247 BRO1_Alix_like_2 Prote 79.9 9.9 0.00021 34.7 8.1 36 6-41 252-287 (346)
90 KOG2997|consensus 79.7 1.9 4.1E-05 39.2 3.3 33 3-35 15-47 (366)
91 cd01760 RBD Ubiquitin-like dom 78.7 4.2 9.1E-05 28.8 4.2 25 120-144 3-27 (72)
92 cd09240 BRO1_Alix Protein-inte 77.4 12 0.00026 34.2 7.9 36 6-41 254-289 (346)
93 PRK00054 dihydroorotate dehydr 76.6 1.8 3.8E-05 37.3 2.1 32 138-170 195-232 (250)
94 cd09241 BRO1_ScRim20-like Prot 75.9 12 0.00026 34.3 7.5 36 6-41 236-271 (355)
95 KOG0547|consensus 75.0 3 6.4E-05 40.2 3.3 30 7-36 115-144 (606)
96 KOG4648|consensus 74.5 2.4 5.2E-05 39.3 2.4 33 4-36 94-126 (536)
97 KOG1840|consensus 74.0 23 0.0005 34.3 9.1 69 3-71 279-349 (508)
98 KOG0545|consensus 73.6 6 0.00013 35.1 4.6 40 6-45 176-217 (329)
99 KOG1840|consensus 72.8 31 0.00067 33.4 9.7 57 13-69 247-315 (508)
100 cd09242 BRO1_ScBro1_like Prote 72.5 14 0.00031 33.7 7.1 36 6-41 243-278 (348)
101 smart00455 RBD Raf-like Ras-bi 72.2 8 0.00017 27.1 4.2 23 122-144 5-27 (70)
102 COG4630 XdhA Xanthine dehydrog 71.5 11 0.00023 35.4 5.9 51 116-168 6-59 (493)
103 PF03704 BTAD: Bacterial trans 71.1 22 0.00049 27.4 7.1 18 17-34 72-89 (146)
104 PF12688 TPR_5: Tetratrico pep 71.0 5.1 0.00011 31.1 3.3 25 11-35 5-29 (120)
105 PF02196 RBD: Raf-like Ras-bin 70.3 10 0.00022 26.6 4.4 27 117-145 3-29 (71)
106 PRK08345 cytochrome-c3 hydroge 68.4 3.2 6.9E-05 36.7 1.9 39 131-170 217-266 (289)
107 PF13414 TPR_11: TPR repeat; P 68.2 10 0.00022 25.1 4.0 18 3-20 18-35 (69)
108 cd06220 DHOD_e_trans_like2 FAD 68.1 3.8 8.2E-05 34.8 2.2 31 137-168 180-216 (233)
109 cd06219 DHOD_e_trans_like1 FAD 67.7 4.5 9.9E-05 34.8 2.6 30 137-167 193-228 (248)
110 KOG0553|consensus 67.6 17 0.00037 32.8 6.2 28 10-37 84-111 (304)
111 PLN02906 xanthine dehydrogenas 67.5 5.6 0.00012 42.8 3.7 32 136-168 1-33 (1319)
112 PF10418 DHODB_Fe-S_bind: Iron 66.8 4.1 8.8E-05 25.5 1.6 18 152-170 4-21 (40)
113 PF05168 HEPN: HEPN domain; I 66.7 14 0.00031 27.0 4.9 39 3-41 4-42 (118)
114 cd09246 BRO1_Alix_like_1 Prote 66.7 26 0.00057 32.1 7.6 36 6-41 246-281 (353)
115 PRK10370 formate-dependent nit 66.7 12 0.00026 31.2 4.9 54 5-68 127-195 (198)
116 cd06221 sulfite_reductase_like 65.9 4.1 8.8E-05 35.2 2.0 29 137-166 203-240 (253)
117 cd06218 DHOD_e_trans FAD/NAD b 65.5 6.3 0.00014 33.9 3.1 32 137-169 193-230 (246)
118 PF03097 BRO1: BRO1-like domai 65.4 45 0.00097 30.4 8.8 63 6-68 238-308 (377)
119 PF13428 TPR_14: Tetratricopep 65.1 13 0.00029 22.8 3.8 25 11-35 5-29 (44)
120 PF13174 TPR_6: Tetratricopept 65.0 9.3 0.0002 21.3 2.8 26 10-35 3-28 (33)
121 PRK06222 ferredoxin-NADP(+) re 64.6 5.6 0.00012 35.0 2.6 30 138-168 195-230 (281)
122 cd09239 BRO1_HD-PTP_like Prote 64.5 25 0.00055 32.4 7.0 36 6-41 251-286 (361)
123 KOG2003|consensus 64.2 66 0.0014 31.2 9.6 65 3-73 641-732 (840)
124 cd09243 BRO1_Brox_like Protein 63.1 41 0.00088 31.0 8.0 35 6-40 247-281 (353)
125 cd09034 BRO1_Alix_like Protein 62.8 27 0.00058 31.5 6.8 37 5-41 249-285 (345)
126 PRK15359 type III secretion sy 62.2 12 0.00026 29.4 3.9 17 19-35 70-86 (144)
127 PF12968 DUF3856: Domain of Un 61.4 17 0.00036 28.8 4.4 30 10-39 103-132 (144)
128 PF02824 TGS: TGS domain; Int 61.0 16 0.00034 24.6 3.8 32 122-155 4-35 (60)
129 KOG0550|consensus 60.0 11 0.00025 35.6 3.8 17 19-35 261-277 (486)
130 PRK15359 type III secretion sy 59.9 38 0.00083 26.5 6.5 32 4-35 74-120 (144)
131 cd01791 Ubl5 UBL5 ubiquitin-li 59.0 20 0.00043 25.1 4.2 36 116-151 1-40 (73)
132 PF03658 Ub-RnfH: RnfH family 57.7 15 0.00032 26.9 3.4 33 117-149 3-36 (84)
133 PF02255 PTS_IIA: PTS system, 57.6 32 0.00068 25.6 5.2 35 6-40 13-47 (96)
134 PF13432 TPR_16: Tetratricopep 57.0 27 0.00059 22.8 4.5 21 14-34 4-24 (65)
135 PF14559 TPR_19: Tetratricopep 56.9 9.3 0.0002 25.2 2.1 17 19-35 3-19 (68)
136 TIGR02911 sulfite_red_B sulfit 56.7 6.6 0.00014 34.2 1.7 28 138-166 204-240 (261)
137 PF02071 NSF: Aromatic-di-Alan 56.7 4.6 0.0001 18.8 0.4 11 26-36 1-11 (12)
138 KOG0547|consensus 55.6 15 0.00033 35.5 3.9 32 4-35 519-565 (606)
139 KOG1156|consensus 55.5 53 0.0012 32.8 7.7 35 1-35 54-103 (700)
140 PRK10454 PTS system N,N'-diace 55.3 33 0.00072 26.5 5.1 35 6-40 30-64 (115)
141 cd00215 PTS_IIA_lac PTS_IIA, P 55.3 35 0.00075 25.5 5.1 35 6-40 14-48 (97)
142 PF13371 TPR_9: Tetratricopept 55.0 40 0.00086 22.4 5.1 16 4-19 11-26 (73)
143 PRK08221 anaerobic sulfite red 54.7 6.9 0.00015 34.1 1.5 29 137-166 205-242 (263)
144 PRK09591 celC cellobiose phosp 54.0 37 0.0008 25.7 5.1 35 6-40 19-53 (104)
145 KOG3049|consensus 53.7 20 0.00044 31.0 4.0 33 135-168 75-113 (288)
146 TIGR02552 LcrH_SycD type III s 53.0 49 0.0011 24.7 5.9 23 12-34 56-78 (135)
147 PRK02603 photosystem I assembl 52.7 26 0.00056 28.0 4.5 30 6-35 34-63 (172)
148 PF08910 Aida_N: Aida N-termin 52.4 1E+02 0.0023 23.5 8.1 60 9-69 7-72 (106)
149 cd01816 Raf_RBD Ubiquitin doma 52.4 23 0.0005 25.3 3.5 24 123-146 6-29 (74)
150 PRK05802 hypothetical protein; 52.1 11 0.00024 34.1 2.3 30 138-168 268-305 (320)
151 PRK12778 putative bifunctional 50.9 12 0.00027 37.6 2.8 29 138-167 195-229 (752)
152 cd01817 RGS12_RBD Ubiquitin do 50.9 28 0.0006 24.8 3.7 38 123-170 6-47 (73)
153 COG1683 Uncharacterized conser 50.2 6.4 0.00014 32.1 0.5 34 137-170 89-122 (156)
154 TIGR00823 EIIA-LAC phosphotran 49.6 48 0.001 24.8 5.1 33 7-39 17-49 (99)
155 PLN03098 LPA1 LOW PSII ACCUMUL 49.1 28 0.00061 33.2 4.6 24 13-36 118-141 (453)
156 PF12569 NARP1: NMDA receptor- 48.4 38 0.00082 32.9 5.5 60 4-72 210-284 (517)
157 PLN03088 SGT1, suppressor of 48.3 23 0.00049 32.4 3.8 32 4-35 18-64 (356)
158 COG2250 Uncharacterized conser 48.2 48 0.001 26.0 5.2 39 3-41 9-47 (132)
159 PF03990 DUF348: Domain of unk 47.6 48 0.001 20.6 4.2 30 119-150 2-31 (43)
160 PF14346 DUF4398: Domain of un 47.5 1.1E+02 0.0024 22.4 6.9 34 4-37 42-75 (103)
161 PF06552 TOM20_plant: Plant sp 47.3 1.1E+02 0.0025 25.6 7.5 20 48-67 91-110 (186)
162 PF11470 TUG-UBL1: GLUT4 regul 47.1 22 0.00047 24.6 2.7 24 122-145 2-25 (65)
163 PLN03098 LPA1 LOW PSII ACCUMUL 47.0 24 0.00051 33.7 3.8 30 6-35 74-103 (453)
164 PRK08364 sulfur carrier protei 47.0 45 0.00099 22.9 4.4 35 115-150 3-37 (70)
165 smart00748 HEPN Higher Eukaryt 46.5 45 0.00099 24.8 4.7 37 5-41 2-38 (113)
166 KOG0543|consensus 45.6 1.2E+02 0.0026 28.6 8.0 67 2-68 271-350 (397)
167 PF09537 DUF2383: Domain of un 45.6 1.1E+02 0.0024 22.6 6.7 44 25-74 15-58 (111)
168 KOG0430|consensus 45.5 36 0.00078 36.2 5.0 45 124-169 7-54 (1257)
169 PRK02603 photosystem I assembl 45.0 40 0.00086 26.9 4.4 28 9-36 74-101 (172)
170 KOG4626|consensus 44.0 22 0.00049 35.5 3.2 24 12-35 393-416 (966)
171 cd01818 TIAM1_RBD Ubiquitin do 43.5 35 0.00075 24.5 3.3 32 123-154 6-41 (77)
172 PRK06437 hypothetical protein; 43.5 47 0.001 22.8 4.0 25 125-149 9-33 (67)
173 PRK01777 hypothetical protein; 41.8 72 0.0016 23.7 5.0 36 116-151 3-41 (95)
174 cd09245 BRO1_UmRIM23-like Prot 41.3 1.4E+02 0.003 28.2 7.9 35 6-40 295-329 (413)
175 CHL00033 ycf3 photosystem I as 41.3 1.5E+02 0.0033 23.2 7.3 18 18-35 83-100 (168)
176 TIGR00990 3a0801s09 mitochondr 39.9 39 0.00085 32.9 4.3 29 7-35 127-155 (615)
177 PLN03088 SGT1, suppressor of 39.9 88 0.0019 28.5 6.3 18 2-19 50-67 (356)
178 PF13429 TPR_15: Tetratricopep 39.6 1.1E+02 0.0025 26.1 6.8 30 6-35 145-174 (280)
179 cd01145 TroA_c Periplasmic bin 39.3 90 0.0019 25.9 5.8 45 30-74 117-161 (203)
180 PF10516 SHNi-TPR: SHNi-TPR; 39.1 48 0.001 20.3 3.1 22 20-41 14-35 (38)
181 smart00671 SEL1 Sel1-like repe 39.0 33 0.00071 19.4 2.3 16 20-35 18-33 (36)
182 KOG2991|consensus 38.6 2.6E+02 0.0056 25.0 8.5 68 9-76 237-307 (330)
183 PF14938 SNAP: Soluble NSF att 38.2 1.3E+02 0.0029 26.2 7.0 31 9-39 76-106 (282)
184 cd01020 TroA_b Metal binding p 37.8 94 0.002 27.0 5.9 46 29-74 103-148 (264)
185 PF05008 V-SNARE: Vesicle tran 37.5 1.4E+02 0.003 20.7 6.4 46 26-71 30-78 (79)
186 cd06192 DHOD_e_trans_like FAD/ 37.4 18 0.00039 30.8 1.3 30 138-168 192-229 (243)
187 PRK10370 formate-dependent nit 36.9 62 0.0013 26.9 4.5 31 5-35 56-101 (198)
188 cd01018 ZntC Metal binding pro 36.6 1E+02 0.0022 26.7 6.0 48 28-75 119-166 (266)
189 PRK12779 putative bifunctional 36.6 29 0.00063 36.2 2.9 30 138-168 861-896 (944)
190 PF01297 TroA: Periplasmic sol 36.5 1.2E+02 0.0025 26.0 6.3 46 29-74 100-145 (256)
191 PRK12370 invasion protein regu 36.4 50 0.0011 31.9 4.3 32 4-35 320-366 (553)
192 KOG0060|consensus 35.8 2E+02 0.0043 28.7 8.2 22 53-74 377-398 (659)
193 KOG0603|consensus 35.6 24 0.00052 34.8 2.0 66 3-68 96-166 (612)
194 TIGR02521 type_IV_pilW type IV 35.3 67 0.0015 25.3 4.4 18 18-35 76-93 (234)
195 KOG2003|consensus 35.1 47 0.001 32.1 3.7 62 10-73 595-662 (840)
196 COG1447 CelC Phosphotransferas 34.6 1E+02 0.0022 23.5 4.9 35 6-40 18-52 (105)
197 PF08238 Sel1: Sel1 repeat; I 34.1 32 0.0007 19.9 1.7 14 22-35 23-36 (39)
198 PRK14065 exodeoxyribonuclease 34.0 1.3E+02 0.0027 22.1 5.0 35 5-39 28-64 (86)
199 PRK11189 lipoprotein NlpI; Pro 33.9 70 0.0015 28.2 4.5 29 7-35 64-92 (296)
200 PRK12775 putative trifunctiona 33.5 31 0.00066 36.3 2.5 30 137-167 194-229 (1006)
201 PRK14064 exodeoxyribonuclease 33.4 1.8E+02 0.0038 20.7 6.6 32 4-35 8-41 (75)
202 PRK15179 Vi polysaccharide bio 33.4 46 0.00099 33.6 3.6 29 6-34 153-181 (694)
203 COG1516 FliS Flagellin-specifi 33.2 1.2E+02 0.0026 24.0 5.3 39 3-41 27-65 (132)
204 PRK07440 hypothetical protein; 32.5 82 0.0018 21.8 3.8 30 116-150 4-33 (70)
205 KOG4234|consensus 32.2 1.1E+02 0.0025 26.5 5.3 50 12-70 173-226 (271)
206 CHL00033 ycf3 photosystem I as 31.9 1.1E+02 0.0024 24.1 5.1 23 19-41 125-147 (168)
207 PF06957 COPI_C: Coatomer (COP 31.5 1.3E+02 0.0027 28.6 6.0 54 8-61 205-260 (422)
208 PRK05659 sulfur carrier protei 30.9 69 0.0015 21.4 3.2 24 125-150 6-29 (66)
209 PF11945 WASH_WAHD: WAHD domai 30.7 1.6E+02 0.0035 26.5 6.3 52 22-73 15-69 (297)
210 PF06069 PerC: PerC transcript 30.5 1.7E+02 0.0038 21.6 5.4 46 12-64 5-51 (90)
211 cd01809 Scythe_N Ubiquitin-lik 29.9 1.1E+02 0.0023 20.4 4.0 25 118-142 2-26 (72)
212 KOG4555|consensus 29.5 1.3E+02 0.0029 24.3 5.0 30 8-37 44-73 (175)
213 KOG4234|consensus 28.9 1.7E+02 0.0036 25.5 5.7 65 5-71 132-196 (271)
214 PF09753 Use1: Membrane fusion 28.7 88 0.0019 27.1 4.2 46 26-75 28-74 (251)
215 PF02185 HR1: Hr1 repeat; Int 28.5 2E+02 0.0042 19.6 5.5 46 29-75 15-61 (70)
216 cd01019 ZnuA Zinc binding prot 28.3 2.1E+02 0.0045 25.2 6.6 46 29-74 129-174 (286)
217 TIGR00364 exsB protein. This p 28.2 52 0.0011 27.2 2.6 28 137-164 162-196 (201)
218 TIGR02795 tol_pal_ybgF tol-pal 28.0 95 0.0021 22.0 3.8 25 11-35 6-30 (119)
219 cd01017 AdcA Metal binding pro 28.0 1.7E+02 0.0037 25.5 6.0 47 29-75 121-167 (282)
220 PF10300 DUF3808: Protein of u 27.9 2.2E+02 0.0048 27.1 7.1 51 16-70 330-380 (468)
221 PF12862 Apc5: Anaphase-promot 27.5 1.3E+02 0.0028 21.7 4.3 33 7-39 41-73 (94)
222 PF13815 Dzip-like_N: Iguana/D 27.5 2.8E+02 0.006 21.1 7.1 49 25-74 59-107 (118)
223 PRK15363 pathogenicity island 27.4 41 0.00089 27.5 1.8 20 16-35 78-97 (157)
224 TIGR00990 3a0801s09 mitochondr 27.4 78 0.0017 30.8 4.0 15 4-18 483-497 (615)
225 PRK11189 lipoprotein NlpI; Pro 27.2 1.1E+02 0.0023 26.9 4.6 24 12-35 103-126 (296)
226 cd01763 Sumo Small ubiquitin-r 26.5 2E+02 0.0044 20.4 5.2 37 114-150 9-49 (87)
227 KOG3906|consensus 26.4 1.4E+02 0.003 26.9 4.9 48 21-73 219-266 (399)
228 COG5010 TadD Flp pilus assembl 26.3 64 0.0014 28.5 2.8 26 13-38 140-165 (257)
229 KOG4162|consensus 25.9 2.9E+02 0.0063 28.3 7.6 61 3-64 409-471 (799)
230 cd00189 TPR Tetratricopeptide 25.6 99 0.0022 19.6 3.3 15 20-34 13-27 (100)
231 PRK10972 Z-ring-associated pro 25.5 74 0.0016 24.4 2.8 27 116-145 5-33 (109)
232 cd01016 TroA Metal binding pro 25.4 2E+02 0.0043 25.1 5.9 46 29-74 109-154 (276)
233 PRK10153 DNA-binding transcrip 25.2 94 0.002 30.1 4.1 50 14-70 427-476 (517)
234 cd01995 ExsB ExsB is a transcr 25.1 57 0.0012 25.9 2.3 30 135-164 125-158 (169)
235 cd00089 HR1 Protein kinase C-r 25.1 2.3E+02 0.005 19.4 6.2 46 29-74 23-69 (72)
236 cd01806 Nedd8 Nebb8-like ubiq 25.0 1.4E+02 0.0031 20.0 4.0 25 118-142 2-26 (76)
237 KOG4797|consensus 24.9 3E+02 0.0064 21.2 5.8 42 21-69 48-89 (123)
238 PF11334 DUF3136: Protein of u 24.8 1.3E+02 0.0027 20.9 3.5 37 21-62 4-41 (64)
239 PF02561 FliS: Flagellar prote 24.8 3.1E+02 0.0068 20.7 8.1 39 3-41 25-63 (122)
240 PRK05685 fliS flagellar protei 24.7 2.1E+02 0.0045 22.3 5.3 39 3-41 31-69 (132)
241 PF11976 Rad60-SLD: Ubiquitin- 24.7 1.4E+02 0.003 20.0 3.9 35 117-151 1-39 (72)
242 PF10531 SLBB: SLBB domain; I 24.6 1.4E+02 0.003 19.6 3.7 24 129-152 12-35 (59)
243 PRK14067 exodeoxyribonuclease 24.6 2.4E+02 0.0051 20.3 5.1 34 4-37 9-44 (80)
244 PLN02789 farnesyltranstransfer 24.3 1.1E+02 0.0024 27.6 4.2 16 5-20 125-140 (320)
245 KOG4014|consensus 24.0 2.2E+02 0.0049 24.4 5.5 56 4-72 184-239 (248)
246 cd01810 ISG15_repeat2 ISG15 ub 24.0 1.5E+02 0.0032 20.2 4.0 31 120-150 2-36 (74)
247 cd01805 RAD23_N Ubiquitin-like 23.7 1.6E+02 0.0034 20.0 4.0 25 118-142 2-26 (77)
248 cd01790 Herp_N Homocysteine-re 23.6 1.7E+02 0.0036 21.0 4.2 26 117-142 2-29 (79)
249 PRK12370 invasion protein regu 23.6 1.2E+02 0.0025 29.4 4.4 32 4-35 354-400 (553)
250 PRK14068 exodeoxyribonuclease 23.6 2.8E+02 0.006 19.7 7.4 35 4-38 8-44 (76)
251 KOG1586|consensus 23.2 4.6E+02 0.01 23.3 7.5 23 17-39 123-146 (288)
252 KOG0543|consensus 23.1 2.8E+02 0.0062 26.1 6.6 50 14-63 215-264 (397)
253 KOG2460|consensus 22.8 2E+02 0.0043 28.2 5.6 59 13-71 428-490 (593)
254 TIGR02521 type_IV_pilW type IV 22.6 1.5E+02 0.0033 23.2 4.3 30 6-35 30-59 (234)
255 PF01476 LysM: LysM domain; I 22.6 72 0.0016 19.1 1.9 20 132-151 2-21 (44)
256 cd01804 midnolin_N Ubiquitin-l 22.4 2E+02 0.0043 20.0 4.4 26 117-142 2-27 (78)
257 PF04652 DUF605: Vta1 like; I 22.3 2.7E+02 0.0059 25.3 6.4 58 8-71 4-61 (380)
258 TIGR02899 spore_safA spore coa 22.2 50 0.0011 19.4 1.1 19 133-151 1-19 (44)
259 KOG4626|consensus 21.9 77 0.0017 32.0 2.7 9 62-70 512-520 (966)
260 cd01807 GDX_N ubiquitin-like d 21.4 1.9E+02 0.0041 19.7 4.0 33 118-150 2-38 (74)
261 COG2440 FixX Ferredoxin-like p 21.2 40 0.00088 25.4 0.6 14 156-169 66-79 (99)
262 cd01803 Ubiquitin Ubiquitin. U 21.1 1.9E+02 0.0041 19.4 4.0 25 118-142 2-26 (76)
263 KOG2581|consensus 21.1 1.9E+02 0.0042 27.6 5.1 98 3-106 224-334 (493)
264 PF07720 TPR_3: Tetratricopept 21.0 1.6E+02 0.0036 17.6 3.2 18 14-31 8-25 (36)
265 cd01792 ISG15_repeat1 ISG15 ub 21.0 1.9E+02 0.0042 20.1 4.1 26 117-142 3-28 (80)
266 PF10602 RPN7: 26S proteasome 20.8 2.7E+02 0.0059 22.7 5.5 54 12-70 41-106 (177)
267 PF02609 Exonuc_VII_S: Exonucl 20.7 2.5E+02 0.0054 18.1 7.5 34 5-38 2-37 (53)
268 cd00118 LysM Lysin domain, fou 20.7 91 0.002 17.5 2.1 20 131-150 3-22 (46)
269 PRK09545 znuA high-affinity zi 20.7 3.3E+02 0.0072 24.3 6.5 44 32-75 156-199 (311)
270 PRK00977 exodeoxyribonuclease 20.6 3.3E+02 0.0071 19.5 7.4 35 4-38 12-48 (80)
271 PRK12721 secretion system appa 20.6 3E+02 0.0065 25.3 6.2 47 86-150 259-305 (349)
272 TIGR02552 LcrH_SycD type III s 20.6 1.9E+02 0.0041 21.3 4.3 27 9-35 19-45 (135)
273 cd01802 AN1_N ubiquitin-like d 20.4 2.9E+02 0.0062 20.6 5.1 35 116-150 27-65 (103)
274 cd01812 BAG1_N Ubiquitin-like 20.4 1.8E+02 0.0038 19.3 3.7 25 117-142 1-25 (71)
275 PTZ00044 ubiquitin; Provisiona 20.2 2.1E+02 0.0046 19.3 4.1 32 118-149 2-37 (76)
276 cd01137 PsaA Metal binding pro 20.1 2.8E+02 0.0061 24.4 5.8 46 29-74 125-170 (287)
277 COG1730 GIM5 Predicted prefold 20.0 4.7E+02 0.01 21.0 7.4 43 21-71 90-132 (145)
No 1
>KOG3309|consensus
Probab=100.00 E-value=4.3e-36 Score=238.09 Aligned_cols=126 Identities=57% Similarity=0.956 Sum_probs=119.5
Q ss_pred ccccCCCCCCceeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHh
Q psy1437 105 YEWQDPKSEDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDD 184 (232)
Q Consensus 105 ~~~~~~~~~~~mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~ 184 (232)
.+|..+++.+ |+|+|++++|.+..+.+..|+|||++|.++||++++.|+|+-+|+||||+|.+.+++++++|.++|.+
T Consensus 34 ~~~~~~~~e~--i~Itfv~~dG~~~~i~g~vGdtlLd~ah~n~idleGACEgslACSTCHViv~~~~yekl~ep~DeE~D 111 (159)
T KOG3309|consen 34 PSKGPRKVED--IKITFVDPDGEEIKIKGKVGDTLLDAAHENNLDLEGACEGSLACSTCHVIVDEEYYEKLPEPEDEEND 111 (159)
T ss_pred cccCCCCCce--EEEEEECCCCCEEEeeeecchHHHHHHHHcCCCccccccccccccceEEEEcHHHHhcCCCCcchHHH
Confidence 4555555543 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCcCCCCCCcEEeeeeEEecCCCceEEEecCcccccccCCCCCCCC
Q psy1437 185 LLDLAPFLKDNSRLGCQIILTKELEGIEVTLPKATRNFYVDGHTPKPH 232 (232)
Q Consensus 185 ~L~~~~~~~~g~RLaCQ~~~~~dl~g~~V~lp~~~~~~~~~~~~~~~~ 232 (232)
+|+.+..+.++|||+||+.++++|+||+|.||..+||+++|||+|+||
T Consensus 112 mLDlA~gLt~tSRLGCQI~l~keldG~~v~vP~atrn~~vd~~~~kph 159 (159)
T KOG3309|consen 112 MLDLAFGLTETSRLGCQIVLTKELDGMRVAVPEATRNFRVDGFVPKPH 159 (159)
T ss_pred HHHhhhccccccccceEEEeccccCCcEEECccccccccccCCCCCCC
Confidence 999999999999999999999999999999999999999999999999
No 2
>PLN02593 adrenodoxin-like ferredoxin protein
Probab=100.00 E-value=1.7e-33 Score=219.02 Aligned_cols=116 Identities=53% Similarity=0.948 Sum_probs=109.2
Q ss_pred eEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEe-cCCccCCCCCChhHHhhcCCcCCCCCC
Q psy1437 117 VNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVK-HEYLDALPPAEEKEDDLLDLAPFLKDN 195 (232)
Q Consensus 117 v~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~-~g~~~~l~~~~~~E~~~L~~~~~~~~g 195 (232)
|+|+|++++|.+++|.+.+|+|||++++++|+++++.|||.|.||||+|+|+ .++.+.++++++.|.++|+...++.++
T Consensus 1 ~~V~fi~~~G~~~~v~~~~G~tLl~a~~~~gi~i~~~CgG~g~C~tC~V~V~~~~~~~~l~~~~~~E~~~L~~~~~~~~~ 80 (117)
T PLN02593 1 ISVTFVDKDGEERTVKAPVGMSLLEAAHENDIELEGACEGSLACSTCHVIVMDEKVYNKLPEPTDEENDMLDLAFGLTET 80 (117)
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHcCCCCCccCCCcceeCCCEEEEecCccccCCCCCChHHHHHHhcccCCCCC
Confidence 5899999999999999999999999999999999999999999999999994 556788999999999999855788999
Q ss_pred cEEeeeeEEecCCCceEEEecCcccccccCCCCCCCC
Q psy1437 196 SRLGCQIILTKELEGIEVTLPKATRNFYVDGHTPKPH 232 (232)
Q Consensus 196 ~RLaCQ~~~~~dl~g~~V~lp~~~~~~~~~~~~~~~~ 232 (232)
||||||+.+.++|+|++|+||+..+|+.+++|+|+||
T Consensus 81 sRLaCQ~~v~~~~~~~~v~ip~~~~~~~~~~~~~~~~ 117 (117)
T PLN02593 81 SRLGCQVIAKPELDGMRLALPAATRNFAVDGHVPKPH 117 (117)
T ss_pred eEecceeEeecCCCCEEEEcCchhccccccCCCCCCC
Confidence 9999999999999999999999999999999999999
No 3
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=99.96 E-value=2.4e-28 Score=195.48 Aligned_cols=109 Identities=32% Similarity=0.584 Sum_probs=101.2
Q ss_pred CceeEEEEEeCCCCEEEEEecCCchHHHHHHHC-CCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCC
Q psy1437 114 DEIVNITFIDKDGKRREIKGKVGDNVLYLAHRY-EIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFL 192 (232)
Q Consensus 114 ~~mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~-gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~ 192 (232)
...|+|+|++++|.+++|++++|+|||+++.++ ++++++.|||.|+||||||+|.+||++.++++++.|.++|+...++
T Consensus 33 ~g~v~I~~~~~dG~~~~v~~~~G~sLLeal~~~~~i~i~~~CGG~g~CgtC~V~V~~g~~~~l~~~~~~E~~~L~~~~~~ 112 (143)
T PTZ00490 33 PGKVKVCVKKRDGTHCDVEVPVGMSLMHALRDVAKLDVEGTCNGCMQCATCHVYLSAASFKKLGGPSEEEEDVLAKALDV 112 (143)
T ss_pred CCcEEEEEEcCCCCEEEEEECCCccHHHHHHHcCCCCccccCCCCCEeCCCEEEECCCccccCCCCChHHHHHhhccccC
Confidence 345999999999999999999999999999995 6899999999999999999999999999999999999999865589
Q ss_pred CCCcEEeeeeEEecCCCceEEEecCccccc
Q psy1437 193 KDNSRLGCQIILTKELEGIEVTLPKATRNF 222 (232)
Q Consensus 193 ~~g~RLaCQ~~~~~dl~g~~V~lp~~~~~~ 222 (232)
.+|||||||+.+++||+|++|++|+...|.
T Consensus 113 ~~gsRLaCQi~v~~~ldgl~V~vp~~~~~~ 142 (143)
T PTZ00490 113 KETSRLACQVDLTPEMDGLEVELPSYVTNR 142 (143)
T ss_pred CCCcEEeeeEEEecCCCCEEEEeCcccccc
Confidence 999999999999999999999999887653
No 4
>TIGR02007 fdx_isc ferredoxin, 2Fe-2S type, ISC system. This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes.
Probab=99.89 E-value=1.1e-22 Score=156.60 Aligned_cols=95 Identities=41% Similarity=0.650 Sum_probs=82.2
Q ss_pred eCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCCcEEeeee
Q psy1437 123 DKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQI 202 (232)
Q Consensus 123 ~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g~RLaCQ~ 202 (232)
.++|.. |++.+|+|||++++++|+++++.|+|.|+||||+|+|.+|. ..+++++..|.+.|+...++.++||||||+
T Consensus 12 ~p~~~~--~~~~~g~tLL~a~~~~gi~i~~~CgG~G~CgtC~v~V~~G~-~~~~~~~~~e~~~L~~~~~~~~~~RLaCq~ 88 (110)
T TIGR02007 12 CPEGAV--VEAKPGETILDVALDNGIEIEHACEKSCACTTCHCIVREGF-DSLEEASEQEEDMLDKAWGLEPDSRLSCQA 88 (110)
T ss_pred CCCCeE--EEECCCChHHHHHHHcCCCccccCCCCceeCCCEEEEeecc-ccCCCCCHHHHHHHhhccCCCCCcEEeeeE
Confidence 466754 99999999999999999999999999999999999999995 668888888988987545788999999999
Q ss_pred EEecCCCceEEEecCccccc
Q psy1437 203 ILTKELEGIEVTLPKATRNF 222 (232)
Q Consensus 203 ~~~~dl~g~~V~lp~~~~~~ 222 (232)
.+.++ +++|++|..+++.
T Consensus 89 ~~~~~--dl~v~~~~~~~~~ 106 (110)
T TIGR02007 89 VVADE--DLVVEIPKYTINH 106 (110)
T ss_pred EEcCC--CEEEEECchhhhh
Confidence 99853 4999999766543
No 5
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=99.87 E-value=5.2e-22 Score=142.82 Aligned_cols=71 Identities=28% Similarity=0.506 Sum_probs=66.6
Q ss_pred CchHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh-cc-CChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 2 GLPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA-NS-SSDENVAAWRQKAQQYLNRAEVLKDKIQV 72 (232)
Q Consensus 2 ~~~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~-~e-~~~~~~~~~~~k~~eY~~RaE~lk~~~~~ 72 (232)
++.++|++++++||++|++|+|++|+.||++||++|+.++ ++ +|++.++.||+|+.+||+|||+||+++..
T Consensus 1 ~le~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~~~~~~~n~~~k~~ir~K~~eYl~RAE~Lk~~l~~ 73 (76)
T cd02681 1 ALERDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIYAEMAGTLNDSHLKTIQEKSNEYLDRAQALHQLVQG 73 (76)
T ss_pred CHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3678999999999999999999999999999999999986 66 89999999999999999999999999853
No 6
>COG0633 Fdx Ferredoxin [Energy production and conversion]
Probab=99.87 E-value=9.3e-22 Score=149.58 Aligned_cols=100 Identities=39% Similarity=0.572 Sum_probs=84.8
Q ss_pred eeEEEEEeCCCCE-EEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCC
Q psy1437 116 IVNITFIDKDGKR-REIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKD 194 (232)
Q Consensus 116 mv~Vt~~~~~G~~-~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~ 194 (232)
|.+++|+..++.. ..+.+..|+|||++|.++||++++.|+| |.||||+|+|.+| ++.++++++.|.++|+ +....+
T Consensus 1 ~~~~~~v~~~~~~~~~~~~~~g~tiLe~a~~~gi~i~~~C~~-g~C~TC~v~v~~G-~~~v~~~~~~e~~~l~-~~~~~~ 77 (102)
T COG0633 1 MPKIAFVTIDGEGDVTEAVNEGETLLEAAERNGIPIEYACRG-GACGTCRVKVLEG-FDEVSPPEESEEDLLD-AAGLEG 77 (102)
T ss_pred CCceEEEeccCCcceEEeccCCcHHHHHHHHCCCcceecCCC-CccCccEEEEecC-cccCCCcchHHHHHHH-hhccCC
Confidence 3456666666643 4455666999999999999999999997 6999999999999 6889999999999997 677889
Q ss_pred CcEEeeeeEEecCCCceEEEecCc
Q psy1437 195 NSRLGCQIILTKELEGIEVTLPKA 218 (232)
Q Consensus 195 g~RLaCQ~~~~~dl~g~~V~lp~~ 218 (232)
++||+||+.+.+|++..++..|..
T Consensus 78 ~~rL~Cq~~~~~d~~i~~~~~~~~ 101 (102)
T COG0633 78 NSRLSCQCRVKGDLDIEVVEEPEY 101 (102)
T ss_pred CcEEeeeeEECCCcceEEEeccCC
Confidence 999999999999988888888753
No 7
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=99.86 E-value=3e-21 Score=139.49 Aligned_cols=74 Identities=23% Similarity=0.333 Sum_probs=69.8
Q ss_pred chHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1437 3 LPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA-NSSSDENVAAWRQKAQQYLNRAEVLKDKIQVMFLR 76 (232)
Q Consensus 3 ~~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~-~e~~~~~~~~~~~k~~eY~~RaE~lk~~~~~~~~~ 76 (232)
...+|++++++||++|++|+|++|+.||++||++|++++ +++|+..++.||+|+.+|++|||+||++|++.+++
T Consensus 2 ~~~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r~ki~eY~~RAE~Lk~~l~~~~~~ 76 (77)
T cd02683 2 LELAAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKKNLRQKISEYMDRAEAIKKRLDQEKED 76 (77)
T ss_pred chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhC
Confidence 367899999999999999999999999999999999999 78999999999999999999999999999877654
No 8
>TIGR02008 fdx_plant ferredoxin [2Fe-2S]. This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.
Probab=99.83 E-value=2.3e-20 Score=140.63 Aligned_cols=95 Identities=21% Similarity=0.329 Sum_probs=78.9
Q ss_pred eeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCC
Q psy1437 116 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDN 195 (232)
Q Consensus 116 mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g 195 (232)
..+|+|+.++|..+++.+.+|+|||++++++||+++++|+ +|.||+|+++|.+|.+.. . +...|+ ..++.+|
T Consensus 2 ~~~v~~~~~~~~~~~~~~~~g~tLLda~~~~Gi~i~~~C~-~G~Cg~C~v~v~~G~~~~-~-----~~~~l~-~~~~~~g 73 (97)
T TIGR02008 2 TYKVTLVNPDGGEETIECPDDQYILDAAEEAGIDLPYSCR-AGACSTCAGKVEEGTVDQ-S-----DQSFLD-DDQMEAG 73 (97)
T ss_pred eEEEEEEECCCCEEEEEECCCCcHHHHHHHcCCCCCcCCC-CccCCCCceEEEeCcEec-C-----ccCCCC-HHHHhCC
Confidence 3578886688877779999999999999999999999998 799999999999996431 1 112344 3567889
Q ss_pred cEEeeeeEEecCCCceEEEecCcccc
Q psy1437 196 SRLGCQIILTKELEGIEVTLPKATRN 221 (232)
Q Consensus 196 ~RLaCQ~~~~~dl~g~~V~lp~~~~~ 221 (232)
+||+||+.+.+| ++|++|...++
T Consensus 74 ~~LaC~~~~~~d---i~v~~~~~~~~ 96 (97)
T TIGR02008 74 YVLTCVAYPTSD---CTIETHKEEDL 96 (97)
T ss_pred eEEEeeCEECCC---eEEEecccccc
Confidence 999999999998 99999987664
No 9
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=99.83 E-value=4e-20 Score=132.25 Aligned_cols=68 Identities=28% Similarity=0.271 Sum_probs=65.0
Q ss_pred chHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 3 LPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA-NSSSDENVAAWRQKAQQYLNRAEVLKDKI 70 (232)
Q Consensus 3 ~~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~-~e~~~~~~~~~~~k~~eY~~RaE~lk~~~ 70 (232)
+.++|+.++++||++|+.|+|++|+.||++||++|++++ ..+|+.++..||+|++||++|||.||+.+
T Consensus 2 L~~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~Rae~Lk~~v 70 (75)
T cd02682 2 LEEMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRRIEVLEKQN 70 (75)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 578999999999999999999999999999999999999 46899999999999999999999999987
No 10
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=99.82 E-value=6.6e-20 Score=131.88 Aligned_cols=70 Identities=30% Similarity=0.334 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 4 PEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA-NSSSDENVAAWRQKAQQYLNRAEVLKDKIQVM 73 (232)
Q Consensus 4 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~-~e~~~~~~~~~~~k~~eY~~RaE~lk~~~~~~ 73 (232)
+++|+.++++||+.|++|+|++|+.+|.+|+++|+.++ +|+|+..|+.||+|+.+|++|||+||++|++.
T Consensus 3 l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~~k~e~~~~~k~~lr~k~~eyl~RAE~LK~~l~~~ 73 (75)
T cd02684 3 LEKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVPALHYETDAQRKEALRQKVLQYVSRAEELKALIASD 73 (75)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 57999999999999999999999999999999999999 79999999999999999999999999999654
No 11
>CHL00134 petF ferredoxin; Validated
Probab=99.80 E-value=2.7e-19 Score=135.30 Aligned_cols=94 Identities=20% Similarity=0.288 Sum_probs=76.9
Q ss_pred eEEEEEeC-CCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCC
Q psy1437 117 VNITFIDK-DGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDN 195 (232)
Q Consensus 117 v~Vt~~~~-~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g 195 (232)
.+|+|.++ +|..+.|.++.|+|||++|+++||++++.|+ .|.||+|+++|.+|.+.. . +...|+ ..++.+|
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~tLL~a~~~~Gi~i~~~C~-~G~Cg~C~v~v~~G~v~~-~-----~~~~l~-~~e~~~g 75 (99)
T CHL00134 4 YKVTLLSEEEGIDVTIDCPDDVYILDAAEEQGIDLPYSCR-AGACSTCAGKVTEGTVDQ-S-----DQSFLD-DDQLEAG 75 (99)
T ss_pred EEEEEEecCCCCeEEEEECCCCcHHHHHHHcCCCCCcCCC-CccCCCCEEEEEeCcccc-C-----cccCCC-HHHHhCC
Confidence 56776532 5666789999999999999999999999999 899999999999996532 1 112344 3567889
Q ss_pred cEEeeeeEEecCCCceEEEecCcccc
Q psy1437 196 SRLGCQIILTKELEGIEVTLPKATRN 221 (232)
Q Consensus 196 ~RLaCQ~~~~~dl~g~~V~lp~~~~~ 221 (232)
++|+||+.+.+| ++|++|...++
T Consensus 76 ~~L~C~~~~~~d---~~i~~~~~~~~ 98 (99)
T CHL00134 76 FVLTCVAYPTSD---CTILTHQEEEL 98 (99)
T ss_pred eEEEeeCEECCC---eEEEecccccc
Confidence 999999999999 99999987764
No 12
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=99.79 E-value=6.1e-19 Score=126.78 Aligned_cols=68 Identities=29% Similarity=0.382 Sum_probs=65.6
Q ss_pred CchHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 2 GLPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA-NSSSDENVAAWRQKAQQYLNRAEVLKDK 69 (232)
Q Consensus 2 ~~~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~-~e~~~~~~~~~~~k~~eY~~RaE~lk~~ 69 (232)
||+.+|++++++||+.|++|+|++|+.+|++||++|+.++ +++|+..|+.++.|+.+||+|||+|+..
T Consensus 1 d~l~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~~k~e~~~~~k~~ir~K~~eYl~RAE~i~~~ 69 (75)
T cd02677 1 DYLEQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKGVQGDSSPERREAVKRKIAEYLKRAEEILRL 69 (75)
T ss_pred ChHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999999999999 7999999999999999999999999874
No 13
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=99.79 E-value=8.1e-19 Score=126.22 Aligned_cols=72 Identities=24% Similarity=0.343 Sum_probs=68.1
Q ss_pred CchHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 2 GLPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA-NSSSDENVAAWRQKAQQYLNRAEVLKDKIQVM 73 (232)
Q Consensus 2 ~~~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~-~e~~~~~~~~~~~k~~eY~~RaE~lk~~~~~~ 73 (232)
+|+++|+.++++||+.|+.|+|++|+.+|.+|+++|+.++ .++|+..++.|++|+.+|++|||+||++|++.
T Consensus 1 ~~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k~e~~~~~k~~~~~k~~eyl~RaE~LK~~l~~~ 73 (75)
T cd02678 1 DFLQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHALKYEKNPKSKESIRAKCTEYLDRAEKLKEYLAKK 73 (75)
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5789999999999999999999999999999999999999 68899999999999999999999999998543
No 14
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=99.78 E-value=2e-18 Score=122.05 Aligned_cols=68 Identities=34% Similarity=0.452 Sum_probs=64.4
Q ss_pred chHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 3 LPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA-NSSSDENVAAWRQKAQQYLNRAEVLKDKI 70 (232)
Q Consensus 3 ~~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~-~e~~~~~~~~~~~k~~eY~~RaE~lk~~~ 70 (232)
++++|++++++||++|++|+|++|+.+|++|+++|+.++ .++++..++.|++|+.+|++|||+||++|
T Consensus 1 y~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~~~~~~~~~~~l~~k~~~yl~RAE~lk~~L 69 (69)
T PF04212_consen 1 YLDKAIELIKKAVEADEAGNYEEALELYKEAIEYLMQALKSESNPERRQALRQKMKEYLERAEKLKEYL 69 (69)
T ss_dssp -HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 478999999999999999999999999999999999999 57899999999999999999999999976
No 15
>PLN03136 Ferredoxin; Provisional
Probab=99.76 E-value=2.5e-18 Score=138.52 Aligned_cols=93 Identities=20% Similarity=0.357 Sum_probs=77.4
Q ss_pred eeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCC
Q psy1437 116 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDN 195 (232)
Q Consensus 116 mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g 195 (232)
.++|+|++++| .++|++++|+|||++++++||++|+.|+ .|.||+|+++|.+|.++. .+...|+ .+++.+|
T Consensus 54 ~~~V~l~~~~~-~~~~~~~~g~tILdAa~~~Gi~lp~sCr-~G~CGtC~~~l~~G~V~~------~~~~~L~-~~e~~~G 124 (148)
T PLN03136 54 TYKVKFITPEG-EQEVECEEDVYVLDAAEEAGIDLPYSCR-AGSCSSCAGKVVSGSIDQ------SDQSFLD-DEQISEG 124 (148)
T ss_pred eEEEEEecCCC-cEEEEeCCCCcHHHHHHHcCCCCCcCCC-CccCCCCEEEEecCcCcc------CcccCCC-HHHhcCC
Confidence 46788766666 3469999999999999999999999999 899999999999997542 1223465 4677899
Q ss_pred cEEeeeeEEecCCCceEEEecCccc
Q psy1437 196 SRLGCQIILTKELEGIEVTLPKATR 220 (232)
Q Consensus 196 ~RLaCQ~~~~~dl~g~~V~lp~~~~ 220 (232)
+||+||+++.+| ++|++|.+..
T Consensus 125 ~~LaC~a~p~sD---~~Ie~~~e~~ 146 (148)
T PLN03136 125 YVLTCVAYPTSD---VVIETHKEEA 146 (148)
T ss_pred EEEEeEeEECCC---cEEecCChhh
Confidence 999999999998 9999997654
No 16
>PTZ00038 ferredoxin; Provisional
Probab=99.75 E-value=3.6e-18 Score=142.51 Aligned_cols=94 Identities=22% Similarity=0.345 Sum_probs=78.2
Q ss_pred eeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCC
Q psy1437 116 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDN 195 (232)
Q Consensus 116 mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g 195 (232)
..+|+|..++|. +++.+++|+|||++|+++||++|+.|++ |.||+|+++|.+|.++. .|...|+ .+++++|
T Consensus 95 ~~~Vt~~~~~g~-~~~~v~~geTILdAae~aGI~lp~sCr~-G~CGtCkvrV~~GeV~~------~e~~~Ls-~ee~~~G 165 (191)
T PTZ00038 95 FYNITLQTPDGE-KVIECDEDEYILDAAERQGVELPYSCRG-GSCSTCAAKLLEGEVDN------EDQSYLD-DEQLKKG 165 (191)
T ss_pred eEEEEEEeCCCc-EEEEeCCCCcHHHHHHHcCCCCCcCCCC-ccCCCCEeEEeeccccc------CccccCC-HHHhcCC
Confidence 357888656664 4699999999999999999999999995 99999999999996542 2334565 4678899
Q ss_pred cEEeeeeEEecCCCceEEEecCcccc
Q psy1437 196 SRLGCQIILTKELEGIEVTLPKATRN 221 (232)
Q Consensus 196 ~RLaCQ~~~~~dl~g~~V~lp~~~~~ 221 (232)
+||+||+++.+| ++|++|...+.
T Consensus 166 ~~LaCqa~p~sD---i~Ie~p~e~~~ 188 (191)
T PTZ00038 166 YCLLCTCYPKSD---CTIETHKEDEL 188 (191)
T ss_pred EEEEeeCEECCC---eEEecCChHHh
Confidence 999999999998 99999987653
No 17
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.74 E-value=6.7e-18 Score=156.47 Aligned_cols=94 Identities=21% Similarity=0.305 Sum_probs=78.8
Q ss_pred eEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCCc
Q psy1437 117 VNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNS 196 (232)
Q Consensus 117 v~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g~ 196 (232)
.+|+++..+|..+++.+.+|+|||++|+++|+++++.|+|.|.||+|+|+|.+|.. .++..|...|+ ..++.+|+
T Consensus 30 ~~v~v~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~g~G~Cg~C~v~v~~G~~----~~~~~~~~~L~-~~~~~~g~ 104 (405)
T TIGR01941 30 GDITIGINDDEEKSITVPAGGKLLNTLASNGIFISSACGGGGTCGQCRVRVVEGGG----EILPTELSHFS-KREAKEGW 104 (405)
T ss_pred ccEEEEEcCCCceEEEECCCChHHHHHHHcCCCCcccCCCccEeCCCEEEEccCCc----CCChhhhhhcC-HhHhcCCc
Confidence 34555556676678999999999999999999999999988999999999999963 23455667787 46789999
Q ss_pred EEeeeeEEecCCCceEEEecCc
Q psy1437 197 RLGCQIILTKELEGIEVTLPKA 218 (232)
Q Consensus 197 RLaCQ~~~~~dl~g~~V~lp~~ 218 (232)
||+||+.+++| ++|++|..
T Consensus 105 rLaCq~~~~~d---~~i~~~~~ 123 (405)
T TIGR01941 105 RLSCQVKVKQD---MSIEIPEE 123 (405)
T ss_pred EEEeeCEECCC---EEEEECcc
Confidence 99999999998 99999843
No 18
>KOG0739|consensus
Probab=99.74 E-value=6.1e-18 Score=149.19 Aligned_cols=74 Identities=24% Similarity=0.303 Sum_probs=69.1
Q ss_pred CchHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh-cc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 2 GLPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA-NS-SSDENVAAWRQKAQQYLNRAEVLKDKIQVMFL 75 (232)
Q Consensus 2 ~~~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~-~e-~~~~~~~~~~~k~~eY~~RaE~lk~~~~~~~~ 75 (232)
+++++||+++++|+++|+++||++|+.+|+.|++||+.++ || ++++.|+.||.|+.||++|||+||.+|+....
T Consensus 5 ~~l~kaI~lv~kA~~eD~a~nY~eA~~lY~~aleYF~~~lKYE~~~~kaKd~IraK~~EYLdRAEkLK~yL~~~~~ 80 (439)
T KOG0739|consen 5 SFLQKAIDLVKKAIDEDNAKNYEEALRLYQNALEYFLHALKYEANNKKAKDSIRAKFTEYLDRAEKLKAYLKEKEK 80 (439)
T ss_pred hHHHHHHHHHHHHhhhcchhchHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4789999999999999999999999999999999999999 88 67779999999999999999999999976553
No 19
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=99.73 E-value=1.8e-17 Score=118.95 Aligned_cols=70 Identities=30% Similarity=0.392 Sum_probs=66.2
Q ss_pred chHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 3 LPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA-NSSSDENVAAWRQKAQQYLNRAEVLKDKIQV 72 (232)
Q Consensus 3 ~~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~-~e~~~~~~~~~~~k~~eY~~RaE~lk~~~~~ 72 (232)
++++|+.++++||+.|+.|+|++|+.+|.+|+++|+.++ .++++..+..|++|+.+|++|||+||+.++.
T Consensus 2 ~~~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~~~~~~~~~k~~l~~k~~~yl~RaE~Lk~~l~~ 72 (75)
T cd02656 2 LLQQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQALKAEKEPKLRKLLRKKVKEYLDRAEFLKELLKK 72 (75)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999999999 6789999999999999999999999999854
No 20
>PRK10713 2Fe-2S ferredoxin YfaE; Provisional
Probab=99.73 E-value=1.9e-17 Score=121.59 Aligned_cols=83 Identities=16% Similarity=0.293 Sum_probs=67.4
Q ss_pred eeEEEEEeCCCCEEEEEecC-CchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCC
Q psy1437 116 IVNITFIDKDGKRREIKGKV-GDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKD 194 (232)
Q Consensus 116 mv~Vt~~~~~G~~~~v~~~~-G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~ 194 (232)
|.+|+|. ++|.. |.+.+ |+|||++++++||++|++|+ .|.||+|++++++|.++.... .. .++.+
T Consensus 1 ~~~v~~~-~~~~~--~~~~~~~~tlL~a~~~~gi~~p~~Cr-~G~Cg~C~~~~~sG~v~~~~~-~~---------~~~~~ 66 (84)
T PRK10713 1 MARVTLR-ITGTQ--LLCQDEHPSLLAALESHNVAVEYQCR-EGYCGSCRTRLVAGQVDWIAE-PL---------AFIQP 66 (84)
T ss_pred CCEEEEE-eCCcE--EEecCCCCcHHHHHHHcCCCCCCCCC-CeECCCCEeEEEeCeEecCCC-cc---------chhhC
Confidence 6778874 67755 88886 59999999999999999999 799999999999997653211 11 24568
Q ss_pred CcEEeeeeEEecCCCceEEEe
Q psy1437 195 NSRLGCQIILTKELEGIEVTL 215 (232)
Q Consensus 195 g~RLaCQ~~~~~dl~g~~V~l 215 (232)
|++|+||+++.+| ++|++
T Consensus 67 g~~L~C~~~p~sd---~~ie~ 84 (84)
T PRK10713 67 GEILPCCCRAKGD---IEIEM 84 (84)
T ss_pred CEEEEeeCEECCC---EEEeC
Confidence 9999999999998 88874
No 21
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=99.71 E-value=5.3e-17 Score=116.31 Aligned_cols=65 Identities=28% Similarity=0.295 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHH----HHHHHHHHHHHHHH
Q psy1437 4 PEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETANSSSDENVAAWRQKAQ----QYLNRAEVLKDKIQ 71 (232)
Q Consensus 4 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~e~~~~~~~~~~~k~~----eY~~RaE~lk~~~~ 71 (232)
+++||.++++|++.|++|+|++|+.+|.+|+++|+. ++++..++.|+.|+. +|++|||+||.++.
T Consensus 3 l~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~---ekn~~~k~~i~~K~~~~a~~yl~RAE~Lk~~l~ 71 (75)
T cd02680 3 LERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN---TSNETMDQALQTKLKQLARQALDRAEALKESMS 71 (75)
T ss_pred HHHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH---hcChhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 479999999999999999999999999999999997 679999999999996 99999999999984
No 22
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=99.69 E-value=2e-16 Score=113.98 Aligned_cols=70 Identities=30% Similarity=0.347 Sum_probs=66.6
Q ss_pred CchHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 2 GLPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA-NSSSDENVAAWRQKAQQYLNRAEVLKDKIQ 71 (232)
Q Consensus 2 ~~~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~-~e~~~~~~~~~~~k~~eY~~RaE~lk~~~~ 71 (232)
+++++|++++++||+.|+.|+|++|+.+|.+|+++|+.++ .++++..++.+++|+.+|++|||+||..+.
T Consensus 3 ~~~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~~~~~~~~~~~~~~~k~~eyl~raE~lk~~~~ 73 (77)
T smart00745 3 DYLSKAKELISKALKADEAGDYEEALELYKKAIEYLLEGIKVESDSKRREAVKAKAAEYLDRAEEIKKSLL 73 (77)
T ss_pred cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999999999999999 678999999999999999999999999884
No 23
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.68 E-value=1.9e-16 Score=146.96 Aligned_cols=92 Identities=24% Similarity=0.345 Sum_probs=75.9
Q ss_pred eeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCC
Q psy1437 116 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDN 195 (232)
Q Consensus 116 mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g 195 (232)
+++|++. .+ ..+++++.+|+|||++++++|+++++.|+|+|.||+|+|+|.+|+.. +...|...|+ ..++.+|
T Consensus 35 ~~~i~~~-~~-~~~~~~~~~g~tLL~a~~~~gi~i~~~C~g~G~CgtC~v~v~~G~~~----~~~~e~~~l~-~~e~~~g 107 (409)
T PRK05464 35 DVTIKIN-GD-PEKTITVPAGGKLLGALASNGIFLSSACGGGGSCGQCRVKVKEGGGD----ILPTELSHIS-KREAKEG 107 (409)
T ss_pred cEEEEEc-CC-CcEEEEECCCchHHHHHHHcCCCcccCCCCccEeCCCEEEEecCCcC----CChhhhhhcC-HhhccCC
Confidence 4778863 21 12469999999999999999999999999889999999999999642 2345566776 4678899
Q ss_pred cEEeeeeEEecCCCceEEEecC
Q psy1437 196 SRLGCQIILTKELEGIEVTLPK 217 (232)
Q Consensus 196 ~RLaCQ~~~~~dl~g~~V~lp~ 217 (232)
+|||||+.+.+| ++|+++.
T Consensus 108 ~rLaCq~~~~~d---~~ie~~~ 126 (409)
T PRK05464 108 WRLSCQVKVKQD---MKIEVPE 126 (409)
T ss_pred cEEEeeCEECCC---EEEEECc
Confidence 999999999998 9999874
No 24
>cd00207 fer2 2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.
Probab=99.67 E-value=2e-16 Score=114.74 Aligned_cols=84 Identities=29% Similarity=0.391 Sum_probs=65.1
Q ss_pred EEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCCcEE
Q psy1437 119 ITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRL 198 (232)
Q Consensus 119 Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g~RL 198 (232)
|+|. .+|..++|.+.+|+|||++++++|+++++.|++ |.||+|+|+|.+|.....++ ..+. ..+..+++||
T Consensus 1 v~~~-~~~~~~~~~~~~g~~ll~al~~~g~~~~~~C~~-g~Cg~C~v~v~~G~~~~~~~------~~~~-~~~~~~~~~L 71 (84)
T cd00207 1 VTIN-VPGSGVEVEVPEGETLLDAAREAGIDIPYSCRA-GACGTCKVEVVEGEVDQSDP------SLLD-EEEAEGGYVL 71 (84)
T ss_pred CEEe-cCCCCEEEEECCCCcHHHHHHHcCCCcccCCCC-cCCcCCEEEEeeCccccCcc------cCCC-HHHHhCCeEE
Confidence 3444 334446799999999999999999999999985 89999999999997542221 2232 3456789999
Q ss_pred eeeeEEecCCCceEEE
Q psy1437 199 GCQIILTKELEGIEVT 214 (232)
Q Consensus 199 aCQ~~~~~dl~g~~V~ 214 (232)
+||+.+.+| ++|+
T Consensus 72 aC~~~~~~~---i~v~ 84 (84)
T cd00207 72 ACQTRVTDG---LVIE 84 (84)
T ss_pred EEeCeeCCC---cEEC
Confidence 999999877 7763
No 25
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.66 E-value=1.4e-16 Score=139.35 Aligned_cols=96 Identities=19% Similarity=0.288 Sum_probs=79.1
Q ss_pred eEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCCc
Q psy1437 117 VNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNS 196 (232)
Q Consensus 117 v~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g~ 196 (232)
++|.+. +...+++.+++|.+||.++..+||.+++.|||.|+||.|+|+|.+|.-+ +-+.|...++ ..+..+||
T Consensus 37 ~ti~IN--~d~e~~~t~~aG~kLL~~L~~~gifi~SaCGGggsC~QCkv~v~~ggge----~LpTe~sh~s-krea~eG~ 109 (410)
T COG2871 37 ITIKIN--GDPEKTKTVPAGGKLLGALASSGIFISSACGGGGSCGQCKVRVKKGGGE----ILPTELSHIS-KREAKEGW 109 (410)
T ss_pred eEEEeC--CChhhceecCCchhHHHHHHhCCcccccCCCCCccccccEEEEecCCCc----cCcchhhhhh-hhhhhccc
Confidence 556642 3344679999999999999999999999999999999999999999533 3445566676 37889999
Q ss_pred EEeeeeEEecCCCceEEEecCccccc
Q psy1437 197 RLGCQIILTKELEGIEVTLPKATRNF 222 (232)
Q Consensus 197 RLaCQ~~~~~dl~g~~V~lp~~~~~~ 222 (232)
||+||+.+..| |.|++|++..+.
T Consensus 110 RLsCQ~~Vk~d---m~levpEe~fgv 132 (410)
T COG2871 110 RLSCQVNVKHD---MDLEVPEEVFGV 132 (410)
T ss_pred eEEEEeccccc---ceeechHHhcCc
Confidence 99999999999 999999875543
No 26
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=99.62 E-value=4.6e-16 Score=144.11 Aligned_cols=91 Identities=24% Similarity=0.478 Sum_probs=78.0
Q ss_pred eeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCC
Q psy1437 116 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDN 195 (232)
Q Consensus 116 mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g 195 (232)
|+-|||. |+|++ .+ ++|+|+|++|++.|+.+.+.|||.|+||.|.|.|.+|.. ++...++-|+ ++. ..|
T Consensus 1 ~p~v~f~-psgkr--~~-~~g~~il~aar~~gv~i~s~cggk~~cgkc~v~v~~g~~-~i~s~~dh~k-~~~-----~~g 69 (614)
T COG3894 1 MPLVTFM-PSGKR--GE-DEGTTILDAARRLGVYIRSVCGGKGTCGKCQVVVQEGNH-KIVSSTDHEK-YLR-----ERG 69 (614)
T ss_pred CceeEee-cCCCc--CC-CCCchHHHHHHhhCceEeeecCCCccccceEEEEEeCCc-eeccchhHHH-HHH-----hhc
Confidence 5779986 99988 66 999999999999999999999999999999999999973 4544455554 332 249
Q ss_pred cEEeeeeEEecCCCceEEEecCccc
Q psy1437 196 SRLGCQIILTKELEGIEVTLPKATR 220 (232)
Q Consensus 196 ~RLaCQ~~~~~dl~g~~V~lp~~~~ 220 (232)
+|||||+.+.+| ++|.+|+++|
T Consensus 70 ~rlac~~~v~gd---~~i~ip~es~ 91 (614)
T COG3894 70 YRLACQAQVLGD---LVIFIPPESR 91 (614)
T ss_pred eeeeeehhhcCc---eEEEcCchhh
Confidence 999999999998 9999999987
No 27
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.62 E-value=1.2e-15 Score=138.02 Aligned_cols=92 Identities=14% Similarity=0.248 Sum_probs=74.4
Q ss_pred eEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCCc
Q psy1437 117 VNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNS 196 (232)
Q Consensus 117 v~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g~ 196 (232)
.+|+|. ++|+ ++.+.+|+|||++++++||++++.|+ .|.||+|+|+|.+|.++. ...+...|+ ..+..+|+
T Consensus 3 ~~v~~~-~~~~--~~~~~~g~tlL~a~~~~gi~~~~~C~-~G~Cg~C~~~~~~G~~~~----~~~~~~~l~-~~~~~~g~ 73 (339)
T PRK07609 3 FQVTLQ-PSGR--QFTAEPDETILDAALRQGIHLPYGCK-NGACGSCKGRLLEGEVEQ----GPHQASALS-GEERAAGE 73 (339)
T ss_pred EEEEEe-cCCe--EEEeCCCCcHHHHHHHcCCCCCCCCC-CeECCCCEEEEEECcEec----ccccccCCC-HHHHhCCc
Confidence 468875 6665 49999999999999999999999998 899999999999997542 112234554 35677899
Q ss_pred EEeeeeEEecCCCceEEEecCccc
Q psy1437 197 RLGCQIILTKELEGIEVTLPKATR 220 (232)
Q Consensus 197 RLaCQ~~~~~dl~g~~V~lp~~~~ 220 (232)
||+||+++.+| ++|++|....
T Consensus 74 ~L~C~~~~~~d---~~i~~~~~~~ 94 (339)
T PRK07609 74 ALTCCAKPLSD---LVLEAREVPA 94 (339)
T ss_pred EEEeeCEECCC---EEEEeccccc
Confidence 99999999998 9999886533
No 28
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.61 E-value=1.8e-15 Score=137.32 Aligned_cols=92 Identities=18% Similarity=0.222 Sum_probs=74.1
Q ss_pred EEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCCcE
Q psy1437 118 NITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSR 197 (232)
Q Consensus 118 ~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g~R 197 (232)
+|++..++|....+++.+|+|||++++++|+.+++.|+ .|.||+|+++|++|.++. ...+...|+ ..+..+|+|
T Consensus 4 ~v~~~~~~~~~~~~~~~~g~tlL~a~~~~g~~~p~~C~-~G~Cg~C~~~~~~G~~~~----~~~~~~~l~-~~~~~~g~~ 77 (340)
T PRK11872 4 KVALSFADGKTLFFPVGKDELLLDAALRNGINLPLDCR-EGVCGTCQGRCESGIYSQ----DYVDEDALS-ERDLAQRKM 77 (340)
T ss_pred EEEEEecCCcEEEEEeCCCCcHHHHHHHcCCCCcCCCC-CeECCCCEEEEEeCcccc----CccccccCC-HHHHhCCeE
Confidence 45554467877778899999999999999999999999 799999999999997432 112223454 356779999
Q ss_pred EeeeeEEecCCCceEEEecCc
Q psy1437 198 LGCQIILTKELEGIEVTLPKA 218 (232)
Q Consensus 198 LaCQ~~~~~dl~g~~V~lp~~ 218 (232)
|+||+++.+| ++|++|..
T Consensus 78 L~C~~~~~~d---~~i~~~~~ 95 (340)
T PRK11872 78 LACQTRVKSD---AAFYFDFD 95 (340)
T ss_pred EEeeCEECCc---eEEEecCc
Confidence 9999999999 99998754
No 29
>PF00111 Fer2: 2Fe-2S iron-sulfur cluster binding domain; InterPro: IPR001041 The ferredoxin protein family are electron carrier proteins with an iron-sulphur cofactor that act in a wide variety of metabolic reactions. Ferredoxins can be divided into several subgroups depending upon the physiological nature of the iron-sulphur cluster(s) and according to sequence similarities. This entry represents members of the 2Fe-2S ferredoxin family that have a general core structure consisting of beta(2)-alpha-beta(2), which includes putidaredoxin and terpredoxin, and adrenodoxin [, , , ]. They are proteins of around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. This conserved region is also found as a domain in various metabolic enzymes and in multidomain proteins, such as aldehyde oxidoreductase (N-terminal), xanthine oxidase (N-terminal), phthalate dioxygenase reductase (C-terminal), succinate dehydrogenase iron-sulphur protein (N-terminal), and methane monooxygenase reductase (N-terminal).; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3 1JQ4_A 1DOX_A 1DOY_A 2KAJ_A ....
Probab=99.59 E-value=1.5e-15 Score=109.08 Aligned_cols=75 Identities=27% Similarity=0.359 Sum_probs=56.3
Q ss_pred eCCCCEEEEEecCCch-HHHHHHHC-CCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCCcEEee
Q psy1437 123 DKDGKRREIKGKVGDN-VLYLAHRY-EIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGC 200 (232)
Q Consensus 123 ~~~G~~~~v~~~~G~t-LL~aa~~~-gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g~RLaC 200 (232)
..+|+.++|.+.+|+| ||++|+++ |+++++.|+| |.||+|+|+|.+|.+ ... ....|...+. ..+.||||
T Consensus 2 ~i~g~~~~~~~~~~~~~ll~~~~~~~gi~i~~~C~~-g~Cg~C~v~v~~G~~-~~~-~~~~~~~~~~-----~~~~rLaC 73 (78)
T PF00111_consen 2 TINGKGVTVEVPPGETLLLDALERAGGIGIPYSCGG-GGCGTCRVRVLEGEV-QSN-ETFLEDEELA-----EGGIRLAC 73 (78)
T ss_dssp ETTTEEEEEEEETTSBBHHHHHHHTTTTTSTTSSSS-SSSSTTEEEEEESEE-ETT-TSSSHHHHHH-----TTEEEEGG
T ss_pred EECCeEEEEEeCCCccHHHHHHHHcCCCCcccCCCC-CccCCcEEEEeeCcc-cCC-cccCCHHHHH-----cCCCcCCc
Confidence 3578888899999999 99999999 9999999997 559999999999975 111 1222222221 23348999
Q ss_pred eeEEe
Q psy1437 201 QIILT 205 (232)
Q Consensus 201 Q~~~~ 205 (232)
|++++
T Consensus 74 q~~~t 78 (78)
T PF00111_consen 74 QTRVT 78 (78)
T ss_dssp GSEES
T ss_pred EEEeC
Confidence 99874
No 30
>PRK05713 hypothetical protein; Provisional
Probab=99.58 E-value=3e-15 Score=134.22 Aligned_cols=80 Identities=19% Similarity=0.267 Sum_probs=66.5
Q ss_pred CCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCCcEEeeeeE
Q psy1437 124 KDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQII 203 (232)
Q Consensus 124 ~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g~RLaCQ~~ 203 (232)
++|++ |.+.+|+|||++|+++||++++.|+ .|.||+|+|+|.+|.++. . ....|+ ..++.+|+||+||+.
T Consensus 6 ~~~~~--~~~~~g~tlL~a~~~~gi~~~~~C~-~G~Cg~C~~~~~~G~~~~----~--~~~~l~-~~~~~~g~~L~C~~~ 75 (312)
T PRK05713 6 VGERR--WSVPAGSNLLDALNAAGVAVPYSCR-AGSCHACLVRCLQGEPED----A--LPEALA-AEKREQGWRLACQCR 75 (312)
T ss_pred cCCeE--EEECCCCcHHHHHHHcCCCCCcCCC-CcCCCCCeEEEEeCcccc----C--ccccCC-HHHHhCCeEEEeECE
Confidence 45754 9999999999999999999999999 699999999999996431 1 113443 356788999999999
Q ss_pred EecCCCceEEEec
Q psy1437 204 LTKELEGIEVTLP 216 (232)
Q Consensus 204 ~~~dl~g~~V~lp 216 (232)
+.+| ++|+++
T Consensus 76 ~~~d---~~i~~~ 85 (312)
T PRK05713 76 VVGD---LRVEVF 85 (312)
T ss_pred ECCc---eEEEec
Confidence 9998 999986
No 31
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.49 E-value=7.4e-14 Score=126.84 Aligned_cols=90 Identities=22% Similarity=0.296 Sum_probs=70.7
Q ss_pred ceeEEEEEeCCCCEEE-EEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCC
Q psy1437 115 EIVNITFIDKDGKRRE-IKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLK 193 (232)
Q Consensus 115 ~mv~Vt~~~~~G~~~~-v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~ 193 (232)
...+|+|. .+|..+. +.+.+|+|||++++++||+++++|+ .|.||+|++++++|.+.. .+...|+ ..++.
T Consensus 261 ~~~~v~~~-~~~~~~~~~~~~~~~slL~~~~~~gi~~~~~C~-~G~Cg~C~~~~~~G~v~~------~~~~~l~-~~~~~ 331 (352)
T TIGR02160 261 DVSKVTVT-LDGRSTETSSLSRDESVLDAALRARPDLPFACK-GGVCGTCRAKVLEGKVDM------ERNYALE-PDEVD 331 (352)
T ss_pred CceEEEEE-ECCceEEEEecCCCCcHHHHHHHcCCCCcCCCC-CccCCCCEEEEecccccc------ccccCCC-HHHHh
Confidence 34678875 5676643 6789999999999999999999999 599999999999997532 1122354 35678
Q ss_pred CCcEEeeeeEEecCCCceEEEe
Q psy1437 194 DNSRLGCQIILTKELEGIEVTL 215 (232)
Q Consensus 194 ~g~RLaCQ~~~~~dl~g~~V~l 215 (232)
+|++|+||+++.+| .++|.+
T Consensus 332 ~g~~l~C~~~~~~~--~~~~~~ 351 (352)
T TIGR02160 332 AGYVLTCQAYPLSD--KLVVDY 351 (352)
T ss_pred CCcEEEeeEEECCC--cEEEec
Confidence 89999999999876 577653
No 32
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=99.48 E-value=1e-13 Score=125.17 Aligned_cols=86 Identities=16% Similarity=0.264 Sum_probs=69.0
Q ss_pred CceeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCC
Q psy1437 114 DEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLK 193 (232)
Q Consensus 114 ~~mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~ 193 (232)
+..++|++. ..|+ ++.+.+|+|||++|+++||+++++|+ .|.||+|++++++|.+... . ...|+ ..++.
T Consensus 246 ~~~~~v~~~-~~~~--~~~~~~~~~lL~~~~~~gi~~~~~C~-~G~Cg~C~~~~~~G~v~~~----~--~~~l~-~~~~~ 314 (332)
T PRK10684 246 TSGLTFTKL-QPAR--EFYAPVGTTLLEALESNKVPVVAACR-AGVCGCCKTKVVSGEYTVS----S--TMTLT-PAEIA 314 (332)
T ss_pred CCceEEEEe-cCCE--EEEeCCCChHHHHHHHcCCCccCCCC-CcCCCCCEEEEecCccccc----c--cccCC-HHHHh
Confidence 335678875 4554 58889999999999999999999999 8999999999999975421 1 13454 35678
Q ss_pred CCcEEeeeeEEecCCCceEE
Q psy1437 194 DNSRLGCQIILTKELEGIEV 213 (232)
Q Consensus 194 ~g~RLaCQ~~~~~dl~g~~V 213 (232)
+|++|+||+++.+| ++|
T Consensus 315 ~g~~l~C~~~~~~d---~~i 331 (332)
T PRK10684 315 QGYVLACSCHPQGD---LVL 331 (332)
T ss_pred CCcEEEeeCEECCC---eEE
Confidence 99999999999998 766
No 33
>KOG4509|consensus
Probab=99.31 E-value=4.9e-12 Score=103.93 Aligned_cols=83 Identities=13% Similarity=0.105 Sum_probs=75.7
Q ss_pred chHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHhc-cC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy1437 3 LPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETAN-SS-SDENVAAWRQKAQQYLNRAEVLKDKIQVMFLRNLLC 80 (232)
Q Consensus 3 ~~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~-e~-~~~~~~~~~~k~~eY~~RaE~lk~~~~~~~~~~~~s 80 (232)
++.+|..++.+||+.|++|+|..|+-||+++|+++.++++ .+ +...+-.|+.|++.||+||+.|+++|+.++++|+++
T Consensus 11 ~~~aAa~iL~~AVe~d~e~k~pqALl~YkeGIdLi~e~lk~~~ldna~R~~i~~k~s~Ym~ka~diekYLdqekEdgk~~ 90 (247)
T KOG4509|consen 11 LLKAAAPILCDAVEDDKEGKVPQALLCYKEGIDLIAEALKGMKLDNADRCKIMAKFSDYMDKAADIEKYLDQEKEDGKTH 90 (247)
T ss_pred hhhhhhhHHHHHhcccccccccHHHHHHhhhHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccchh
Confidence 3567888999999999999999999999999999999995 34 566677899999999999999999999999999999
Q ss_pred CCCcc
Q psy1437 81 KLPPV 85 (232)
Q Consensus 81 ~~~~~ 85 (232)
+|+.|
T Consensus 91 eQ~KI 95 (247)
T KOG4509|consen 91 EQIKI 95 (247)
T ss_pred hhhhh
Confidence 99986
No 34
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.87 E-value=2.4e-09 Score=78.17 Aligned_cols=70 Identities=26% Similarity=0.388 Sum_probs=46.3
Q ss_pred CceeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCC---------CcccccCEEEEecCCccCCCCCChhHHh
Q psy1437 114 DEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEA---------SLACTTCHVYVKHEYLDALPPAEEKEDD 184 (232)
Q Consensus 114 ~~mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG---------~G~CgtC~v~v~~g~~~~l~~~~~~E~~ 184 (232)
|++|+|+| +|+. +++.+|+|||+++.++|+.+|+.|.. .|.|+.|.|.|. |.
T Consensus 1 ~~~v~i~i---dG~~--v~~~~G~til~al~~~gi~ip~~c~~~~~r~~~~~~g~C~~C~Vev~-g~------------- 61 (82)
T PF13510_consen 1 DKMVTITI---DGKP--VEVPPGETILEALLAAGIDIPRLCYHGRPRGGLCPIGSCRLCLVEVD-GE------------- 61 (82)
T ss_dssp -EEEEEEE---TTEE--EEEEET-BHHHHHHHTT--B-EETTTS-EEBSSSSSTT-SS-EEEES-SE-------------
T ss_pred CCEEEEEE---CCEE--EEEcCCCHHHHHHHHCCCeEEEeeeccCcccccCCccccceEEEEEC-CC-------------
Confidence 35677775 6866 88899999999999999999999974 499999999995 21
Q ss_pred hcCCcCCCCCCcEEeeeeEEecCCCceEEEe
Q psy1437 185 LLDLAPFLKDNSRLGCQIILTKELEGIEVTL 215 (232)
Q Consensus 185 ~L~~~~~~~~g~RLaCQ~~~~~dl~g~~V~l 215 (232)
....||++.+.. ||+|.-
T Consensus 62 ----------~~v~AC~t~v~~---GM~V~T 79 (82)
T PF13510_consen 62 ----------PNVRACSTPVED---GMVVET 79 (82)
T ss_dssp ----------EEEETTT-B--T---TEEEE-
T ss_pred ----------cceEcccCCCcC---CcEEEE
Confidence 125789998886 488863
No 35
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=98.82 E-value=7.6e-09 Score=89.53 Aligned_cols=71 Identities=21% Similarity=0.393 Sum_probs=56.1
Q ss_pred eeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCC-----CCcccccCEEEEecCCccCCCCCChhHHhhcCCcC
Q psy1437 116 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACE-----ASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAP 190 (232)
Q Consensus 116 mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~Cg-----G~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~ 190 (232)
||+|+ .+|+. |.+++|+|||++|+++|+++|+.|. +.|.|+.|.|.|. |.
T Consensus 3 ~v~i~---idg~~--~~~~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~V~v~-g~------------------- 57 (234)
T PRK07569 3 VKTLT---IDDQL--VSAREGETLLEAAREAGIPIPTLCHLDGLSDVGACRLCLVEIE-GS------------------- 57 (234)
T ss_pred eEEEE---ECCEE--EEeCCCCHHHHHHHHcCCCCCcCcCCCCCCCCCccCCcEEEEC-CC-------------------
Confidence 35555 37866 9999999999999999999999997 5799999999993 41
Q ss_pred CCCCCcEEeeeeEEecCCCceEEEecC
Q psy1437 191 FLKDNSRLGCQIILTKELEGIEVTLPK 217 (232)
Q Consensus 191 ~~~~g~RLaCQ~~~~~dl~g~~V~lp~ 217 (232)
.+.+.||++.+.. ||+|..-.
T Consensus 58 ---~~~~~aC~t~v~~---Gm~v~t~~ 78 (234)
T PRK07569 58 ---NKLLPACVTPVAE---GMVVQTNT 78 (234)
T ss_pred ---CccccCcCCCCCC---CCEEEECC
Confidence 1335589998886 48887653
No 36
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=98.59 E-value=9.7e-08 Score=96.35 Aligned_cols=76 Identities=21% Similarity=0.265 Sum_probs=61.4
Q ss_pred eeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCC-----CCcccccCEEEEecCCccCCCCCChhHHhhcCCcC
Q psy1437 116 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACE-----ASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAP 190 (232)
Q Consensus 116 mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~Cg-----G~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~ 190 (232)
|++|++ +|+. +++++|+|||++|+++||.+|+.|. ..|.|+.|+|+|.+|..
T Consensus 1 ~~~i~i---dg~~--~~~~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~v~v~~g~~------------------ 57 (847)
T PRK08166 1 MATIHV---DGKE--YEVNGADNLLEACLSLGIDIPYFCWHPALGSVGACRQCAVKQYQNPE------------------ 57 (847)
T ss_pred CeEEEE---CCEE--EEeCCCCHHHHHHHHcCCCCCccccCCCCCCCCccCCCeEEEeecCc------------------
Confidence 677775 5865 8889999999999999999999996 36999999999997721
Q ss_pred CCCCCcEEeeeeEEecCCCceEEEecC
Q psy1437 191 FLKDNSRLGCQIILTKELEGIEVTLPK 217 (232)
Q Consensus 191 ~~~~g~RLaCQ~~~~~dl~g~~V~lp~ 217 (232)
+..++.++||++.+.. ||+|....
T Consensus 58 ~~~~~~~~aC~~~v~~---gm~v~t~~ 81 (847)
T PRK08166 58 DTRGRLVMSCMTPATD---GTFISIDD 81 (847)
T ss_pred cCCCCcccCcCCCCCC---CCEEEeCC
Confidence 1234678899888776 49998754
No 37
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=98.10 E-value=5.2e-06 Score=73.66 Aligned_cols=47 Identities=19% Similarity=0.282 Sum_probs=39.4
Q ss_pred eEEEEEeCCCCEEEEEe-cCCchHHHHHHHCCCCccCCCC-----CCcccccCEEEEe
Q psy1437 117 VNITFIDKDGKRREIKG-KVGDNVLYLAHRYEIPMEGACE-----ASLACTTCHVYVK 168 (232)
Q Consensus 117 v~Vt~~~~~G~~~~v~~-~~G~tLL~aa~~~gi~l~~~Cg-----G~G~CgtC~v~v~ 168 (232)
++|+ .||+. |++ ++|+|||++|+++||.||+.|- -.|.|..|.|.|.
T Consensus 69 ~~I~---IDGk~--VeV~~~G~TILeAAr~~GI~IPtLCy~~~L~p~G~CRlClVEVe 121 (297)
T PTZ00305 69 AIMF---VNKRP--VEIIPQEENLLEVLEREGIRVPKFCYHPILSVAGNCRMCLVQVD 121 (297)
T ss_pred eEEE---ECCEE--EEecCCCChHHHHHHHcCCCcCccccCCCCCCCCccceeEEEEC
Confidence 4455 37865 998 8999999999999999999993 2488999999983
No 38
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=98.07 E-value=4.8e-06 Score=79.14 Aligned_cols=60 Identities=20% Similarity=0.333 Sum_probs=49.0
Q ss_pred EEEEecCCchHHHHHHH------CCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCCcEEeeee
Q psy1437 129 REIKGKVGDNVLYLAHR------YEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQI 202 (232)
Q Consensus 129 ~~v~~~~G~tLL~aa~~------~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g~RLaCQ~ 202 (232)
++|.+++|+|||+++++ .++..++.|+ .|.||+|.|.| +|. .+|+|++
T Consensus 23 ~~v~~~~~~tvl~al~~~~~~~~~~l~~~~~C~-~g~Cg~C~v~v-~G~------------------------~~laC~~ 76 (486)
T PRK06259 23 YEVPVKEGMTVLDALEYINKTYDANIAFRSSCR-AGQCGSCAVTI-NGE------------------------PVLACKT 76 (486)
T ss_pred EEEeCCCCChHHHHHHHhchhcCCCceecCCCC-CCCCCCCEEEE-CCe------------------------Eeccccc
Confidence 45667799999999995 5666789998 79999999996 552 2789999
Q ss_pred EEecCCCceEEEecC
Q psy1437 203 ILTKELEGIEVTLPK 217 (232)
Q Consensus 203 ~~~~dl~g~~V~lp~ 217 (232)
.+.++ ++|+.+.
T Consensus 77 ~~~~~---~~i~~~~ 88 (486)
T PRK06259 77 EVEDG---MIIEPLD 88 (486)
T ss_pred CCCCC---CEEEecC
Confidence 99876 9999764
No 39
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.86 E-value=2e-05 Score=77.58 Aligned_cols=71 Identities=20% Similarity=0.382 Sum_probs=54.5
Q ss_pred eeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCC-----CCcccccCEEEEecCCccCCCCCChhHHhhcCCcC
Q psy1437 116 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACE-----ASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAP 190 (232)
Q Consensus 116 mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~Cg-----G~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~ 190 (232)
+++|+ .+|+. +++++|+|||++++++|+.+|..|. +.|.|+.|.|.|. |.
T Consensus 3 ~v~~~---idg~~--~~~~~g~ti~~a~~~~g~~ip~~c~~~~~~~~g~C~~C~V~v~-g~------------------- 57 (652)
T PRK12814 3 TISLT---INGRS--VTAAPGTSILEAAASAGITIPTLCFHQELEATGSCWMCIVEIK-GK------------------- 57 (652)
T ss_pred eEEEE---ECCEE--EEeCCcCcHHHHHHHcCCccccccCCCCCCCccccceeEEEEC-CC-------------------
Confidence 35555 46865 8999999999999999999999997 3799999999883 31
Q ss_pred CCCCCcEEeeeeEEecCCCceEEEecC
Q psy1437 191 FLKDNSRLGCQIILTKELEGIEVTLPK 217 (232)
Q Consensus 191 ~~~~g~RLaCQ~~~~~dl~g~~V~lp~ 217 (232)
.+..+||++.+.. ||+|+...
T Consensus 58 ---~~~~~aC~t~~~~---Gm~v~t~~ 78 (652)
T PRK12814 58 ---NRFVPACSTAVSE---GMVIETEN 78 (652)
T ss_pred ---cceecCcCCCCCC---CCEEEeCc
Confidence 0124588888865 58887643
No 40
>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional
Probab=97.82 E-value=5.8e-05 Score=61.63 Aligned_cols=52 Identities=19% Similarity=0.359 Sum_probs=44.5
Q ss_pred ceeEEEEEeCCCCEEEEEecCCchHHHHHHHCCC-CccCCCCCCcccccCEEEEe
Q psy1437 115 EIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEI-PMEGACEASLACTTCHVYVK 168 (232)
Q Consensus 115 ~mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi-~l~~~CgG~G~CgtC~v~v~ 168 (232)
++..|+|. .+|+.+++.+.++++||+.+++.|+ .....|+ .|.||.|-|.|.
T Consensus 5 ~~~~i~~~-vNG~~~~~~~~~~~~Ll~~LR~~gltgtK~GC~-~G~CGACtVlvd 57 (159)
T PRK09908 5 ETITIECT-INGMPFQLHAAPGTPLSELLREQGLLSVKQGCC-VGECGACTVLVD 57 (159)
T ss_pred CceeEEEE-ECCEEEEEecCCCCcHHHHHHHcCCCCCCCCcC-CCCCCCcEEEEC
Confidence 34567765 6899999999999999999999887 4789998 799999999984
No 41
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=97.82 E-value=2.8e-05 Score=78.16 Aligned_cols=68 Identities=25% Similarity=0.512 Sum_probs=53.4
Q ss_pred eeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCC-----CCCcccccCEEEEecCCccCCCCCChhHHhhcCCcC
Q psy1437 116 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGAC-----EASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAP 190 (232)
Q Consensus 116 mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~C-----gG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~ 190 (232)
|++|++ +|+. +++++|+|||++|+++||.+|+.| ...|.|+.|.|.|. |. .
T Consensus 1 mv~i~I---dG~~--v~~~~G~til~aa~~~gi~iP~lC~~~~~~~~G~Cr~C~VeV~-G~------------------~ 56 (819)
T PRK08493 1 MITITI---NGKE--CEAQEGEYILNVARRNGIFIPAICYLSGCSPTLACRLCMVEAD-GK------------------R 56 (819)
T ss_pred CeEEEE---CCEE--EEeCCCCHHHHHHHHcCCccccccccCCCCCCccccceEEEEC-CE------------------E
Confidence 566764 6866 888999999999999999999877 44689999999983 31 0
Q ss_pred CCCCCcEEeeeeEEecCCCceEEEec
Q psy1437 191 FLKDNSRLGCQIILTKELEGIEVTLP 216 (232)
Q Consensus 191 ~~~~g~RLaCQ~~~~~dl~g~~V~lp 216 (232)
.+||++.+.. ||+|..-
T Consensus 57 ------~~AC~t~v~d---GM~V~T~ 73 (819)
T PRK08493 57 ------VYSCNTKAKE---GMNILTN 73 (819)
T ss_pred ------eccccCCCCC---CCEEEec
Confidence 4589888863 6888753
No 42
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=97.81 E-value=4.1e-05 Score=77.12 Aligned_cols=72 Identities=25% Similarity=0.431 Sum_probs=56.3
Q ss_pred CceeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCC-----CCcccccCEEEEecCCccCCCCCChhHHhhcCC
Q psy1437 114 DEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACE-----ASLACTTCHVYVKHEYLDALPPAEEKEDDLLDL 188 (232)
Q Consensus 114 ~~mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~Cg-----G~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~ 188 (232)
.+|++|+| ||+. +++++|+|||++|..+||+||+.|. ..|.|.-|.|.|. |.
T Consensus 2 ~~~v~~~i---dg~~--~~~~~g~til~aa~~~gi~ip~~C~~~~l~~~g~Cr~C~Vev~-g~----------------- 58 (797)
T PRK07860 2 PDLVTLTI---DGVE--VSVPKGTLVIRAAELLGIQIPRFCDHPLLDPVGACRQCLVEVE-GQ----------------- 58 (797)
T ss_pred CceEEEEE---CCEE--EEeCCCChHHHHHHHcCCCCCeecCCCCCCCCcccCccEEEEC-CC-----------------
Confidence 45788875 6866 9999999999999999999999995 3689999999993 31
Q ss_pred cCCCCCCcEEeeeeEEecCCCceEEEec
Q psy1437 189 APFLKDNSRLGCQIILTKELEGIEVTLP 216 (232)
Q Consensus 189 ~~~~~~g~RLaCQ~~~~~dl~g~~V~lp 216 (232)
...+-||.+.+.. ||+|+--
T Consensus 59 -----~~~~~aC~t~v~~---gm~V~t~ 78 (797)
T PRK07860 59 -----RKPQASCTTTVTD---GMVVKTQ 78 (797)
T ss_pred -----cccccccCCCCCC---CcEEEeC
Confidence 0113488887775 5888763
No 43
>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B ....
Probab=97.80 E-value=3.2e-05 Score=59.55 Aligned_cols=62 Identities=21% Similarity=0.365 Sum_probs=44.8
Q ss_pred EEEEecCCchHHHHHHHC------CCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCCcEEeeee
Q psy1437 129 REIKGKVGDNVLYLAHRY------EIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQI 202 (232)
Q Consensus 129 ~~v~~~~G~tLL~aa~~~------gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g~RLaCQ~ 202 (232)
++|.+.+|.|+|+++..- -+...++|+ .|.||+|.++|- |. .||||.+
T Consensus 21 y~v~~~~~~tVLd~L~~Ik~~~D~sLafr~sCr-~giCGsCam~IN-G~------------------------~~LAC~t 74 (110)
T PF13085_consen 21 YEVPVEPGMTVLDALNYIKEEQDPSLAFRYSCR-SGICGSCAMRIN-GR------------------------PRLACKT 74 (110)
T ss_dssp EEEEGGSTSBHHHHHHHHHHHT-TT--B--SSS-SSSSSTTEEEET-TE------------------------EEEGGGS
T ss_pred EEecCCCCCcHHHHHHHHHhccCCCeEEEecCC-CCCCCCCEEEEC-Cc------------------------eecceee
Confidence 568889999999998732 355679998 799999999983 41 1899999
Q ss_pred EEecCCCc----eEEEec
Q psy1437 203 ILTKELEG----IEVTLP 216 (232)
Q Consensus 203 ~~~~dl~g----~~V~lp 216 (232)
.+....++ ++|+-.
T Consensus 75 ~v~~~~~~~~~~i~IePL 92 (110)
T PF13085_consen 75 QVDDLIEKFGNVITIEPL 92 (110)
T ss_dssp BGGGCTTSETBEEEEEES
T ss_pred EchhccCCCcceEEEEEC
Confidence 99876543 666633
No 44
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=97.75 E-value=4.8e-05 Score=66.57 Aligned_cols=62 Identities=18% Similarity=0.321 Sum_probs=44.6
Q ss_pred EEEEEecCCchHHHHHHHCC-------------CCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCC
Q psy1437 128 RREIKGKVGDNVLYLAHRYE-------------IPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKD 194 (232)
Q Consensus 128 ~~~v~~~~G~tLL~aa~~~g-------------i~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~ 194 (232)
+++|++.+|.|||+++..-. +...++|+ .|.||+|.++|- |.
T Consensus 24 ~y~v~~~~~~tvLdaL~~I~~~~~~~~g~~~~~l~fr~sCr-~giCGsCam~IN-G~----------------------- 78 (249)
T PRK08640 24 EFEIPYRPNMNVISALMEIRRNPVNAKGEKTTPVVWDMNCL-EEVCGACSMVIN-GK----------------------- 78 (249)
T ss_pred EEEecCCCCCcHHHHHHHHHhcccccccccCCCeeEecccC-CCCCCcCeeEEC-Cc-----------------------
Confidence 35677789999999987421 44568999 799999999984 42
Q ss_pred CcEEeeeeEEecCC-CceEEEec
Q psy1437 195 NSRLGCQIILTKEL-EGIEVTLP 216 (232)
Q Consensus 195 g~RLaCQ~~~~~dl-~g~~V~lp 216 (232)
-||||++.+.. + +.++|+-.
T Consensus 79 -p~LAC~t~v~~-~~~~i~iePl 99 (249)
T PRK08640 79 -PRQACTALIDQ-LEQPIRLEPM 99 (249)
T ss_pred -cchhhhChHHH-cCCcEEEEEC
Confidence 16899888742 3 34677643
No 45
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=97.74 E-value=5e-05 Score=75.28 Aligned_cols=49 Identities=27% Similarity=0.379 Sum_probs=42.6
Q ss_pred eeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCC-----CCcccccCEEEEec
Q psy1437 116 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACE-----ASLACTTCHVYVKH 169 (232)
Q Consensus 116 mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~Cg-----G~G~CgtC~v~v~~ 169 (232)
|++|++ ||+. |++++|+|||++++++||.||+.|- -.|.|..|.|.|..
T Consensus 1 m~~~~I---dg~~--v~v~~g~til~a~~~~gi~IP~lCy~~~l~~~g~Cr~ClVev~~ 54 (687)
T PRK09130 1 MVKLKV---DGKE--IEVPDGYTLLQACEAAGAEIPRFCYHERLSIAGNCRMCLVEVKG 54 (687)
T ss_pred CeEEEE---CCEE--EEeCCCCHHHHHHHHcCCCcCcccCCCCCCCCCCCCCCEEEECC
Confidence 677775 6865 9999999999999999999999993 35899999999964
No 46
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=97.70 E-value=4.7e-05 Score=75.10 Aligned_cols=50 Identities=36% Similarity=0.527 Sum_probs=42.9
Q ss_pred eeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCC-----CCCcccccCEEEEecC
Q psy1437 116 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGAC-----EASLACTTCHVYVKHE 170 (232)
Q Consensus 116 mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~C-----gG~G~CgtC~v~v~~g 170 (232)
|++|++ ||+. ++++.|+|||++|+++||+||+.| +-.|.|..|.|.+..+
T Consensus 1 m~tI~I---DG~e--i~v~~g~tvLqAa~~aGi~IP~fCyh~~ls~~GaCRmClVEveg~ 55 (693)
T COG1034 1 MVTITI---DGKE--IEVPEGETVLQAAREAGIDIPTFCYHPRLSIAGACRMCLVEVEGA 55 (693)
T ss_pred CeEEEE---CCEE--EecCCCcHHHHHHHHcCCCCCcccccCCCCcccceeEEEEEecCC
Confidence 677774 6866 999999999999999999999998 4458999999999754
No 47
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=97.67 E-value=7.6e-05 Score=64.94 Aligned_cols=62 Identities=13% Similarity=0.342 Sum_probs=44.6
Q ss_pred EEEEEecCCchHHHHHHHCC------CCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCCcEEeee
Q psy1437 128 RREIKGKVGDNVLYLAHRYE------IPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQ 201 (232)
Q Consensus 128 ~~~v~~~~G~tLL~aa~~~g------i~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g~RLaCQ 201 (232)
.++|.+.+|.|||+++..-. +...++|+ .|.||+|.+.|- |. -||||+
T Consensus 25 ~y~v~~~~~~tvLdaL~~Ik~~~D~sL~fr~sCr-~giCGsCam~IN-G~------------------------~~LAC~ 78 (239)
T PRK13552 25 TYQLEETPGMTLFIALNRIREEQDPSLQFDFVCR-AGICGSCAMVIN-GR------------------------PTLACR 78 (239)
T ss_pred EEEecCCCCCCHHHHHHHHHhcCCCCeeEeccCC-CCCCCCceeEEC-Ce------------------------Ehhhhh
Confidence 35677889999999988532 44568999 799999999983 42 178888
Q ss_pred eEEecCCC-ceEEEe
Q psy1437 202 IILTKELE-GIEVTL 215 (232)
Q Consensus 202 ~~~~~dl~-g~~V~l 215 (232)
+.+.+--+ +++|+-
T Consensus 79 t~v~~~~~~~i~ieP 93 (239)
T PRK13552 79 TLTSDYPDGVITLMP 93 (239)
T ss_pred ccHhhcCCCcEEEEE
Confidence 87764211 466663
No 48
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=97.63 E-value=0.00017 Score=65.52 Aligned_cols=40 Identities=15% Similarity=0.420 Sum_probs=34.6
Q ss_pred EEEEEecCCchHHHHHHHCCCCcc------CCCCCCcccccCEEEEe
Q psy1437 128 RREIKGKVGDNVLYLAHRYEIPME------GACEASLACTTCHVYVK 168 (232)
Q Consensus 128 ~~~v~~~~G~tLL~aa~~~gi~l~------~~CgG~G~CgtC~v~v~ 168 (232)
.++|.+.+|.|||+++...++.++ .+|+ .|.||+|.|.|-
T Consensus 20 ~~~v~~~~~~tvL~~l~~i~~~~d~tL~~~~~c~-~~~Cg~C~v~in 65 (329)
T PRK12577 20 TYTLEVEPGNTILDCLNRIKWEQDGSLAFRKNCR-NTICGSCAMRIN 65 (329)
T ss_pred EEEEECCCCChHHHHHHHhCCcCCCCcEEcCCCC-CCCCCCCEEEEC
Confidence 367888999999999999998874 5688 699999999993
No 49
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=97.61 E-value=0.00056 Score=49.56 Aligned_cols=40 Identities=25% Similarity=0.228 Sum_probs=37.6
Q ss_pred CchHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh
Q psy1437 2 GLPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA 41 (232)
Q Consensus 2 ~~~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~ 41 (232)
+....|.+++.+|+..|..|.-++|+.+|+.|++.|...+
T Consensus 3 ~~~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ 42 (79)
T cd02679 3 GYYKQAFEEISKALRADEWGDKEQALAHYRKGLRELEEGI 42 (79)
T ss_pred hHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHc
Confidence 4578999999999999999999999999999999999987
No 50
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=97.60 E-value=0.00011 Score=73.81 Aligned_cols=70 Identities=26% Similarity=0.418 Sum_probs=53.5
Q ss_pred eeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCC-----CcccccCEEEEecCCccCCCCCChhHHhhcCCcC
Q psy1437 116 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEA-----SLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAP 190 (232)
Q Consensus 116 mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG-----~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~ 190 (232)
|++|+| ||+. +++++|+|||++++.+||.||+.|-- .|.|..|.|.|. |.
T Consensus 1 m~~~~i---dg~~--~~~~~g~~il~a~~~~g~~ip~~c~~~~~~~~~~C~~C~v~v~-~~------------------- 55 (776)
T PRK09129 1 MVEIEI---DGKK--VEVPEGSMVIEAADKAGIYIPRFCYHKKLSIAANCRMCLVEVE-KA------------------- 55 (776)
T ss_pred CeEEEE---CCEE--EEeCCCCHHHHHHHHcCCCCCcccCCCCCCCCCCcceeEEEEC-CC-------------------
Confidence 667774 6866 88899999999999999999999962 378999999984 31
Q ss_pred CCCCCcEEeeeeEEecCCCceEEEec
Q psy1437 191 FLKDNSRLGCQIILTKELEGIEVTLP 216 (232)
Q Consensus 191 ~~~~g~RLaCQ~~~~~dl~g~~V~lp 216 (232)
...+.||.+.+.. ||+|..-
T Consensus 56 ---~~~~~aC~~~~~~---gm~v~t~ 75 (776)
T PRK09129 56 ---PKPLPACATPVTD---GMKVFTR 75 (776)
T ss_pred ---CCcCcccCCCCCC---CCEEEcC
Confidence 0124578887775 4777653
No 51
>PRK11433 aldehyde oxidoreductase 2Fe-2S subunit; Provisional
Probab=97.54 E-value=0.00024 Score=60.75 Aligned_cols=51 Identities=18% Similarity=0.369 Sum_probs=41.2
Q ss_pred eEEEEEeCCCCEEEEEecCCchHHHHHHHC-CC-CccCCCCCCcccccCEEEEecC
Q psy1437 117 VNITFIDKDGKRREIKGKVGDNVLYLAHRY-EI-PMEGACEASLACTTCHVYVKHE 170 (232)
Q Consensus 117 v~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~-gi-~l~~~CgG~G~CgtC~v~v~~g 170 (232)
..|+|. .+|+.+++.+.++.+||++++++ ++ .....|+ .|.||.|.|.| +|
T Consensus 50 ~~i~~~-VNG~~~~~~v~~~~tLLd~LR~~l~ltGtK~GC~-~G~CGACTVlV-dG 102 (217)
T PRK11433 50 SPVTLK-VNGKTEQLEVDTRTTLLDALREHLHLTGTKKGCD-HGQCGACTVLV-NG 102 (217)
T ss_pred ceEEEE-ECCEEEEEecCCCCcHHHHHHHhcCCCCCCCCCC-CCCcCceEEEE-CC
Confidence 446654 67988889999999999999985 44 3678898 69999999955 56
No 52
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=97.46 E-value=0.00023 Score=62.31 Aligned_cols=58 Identities=14% Similarity=0.264 Sum_probs=40.8
Q ss_pred EEEE-ecCCchHHHHHHHC----------CCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCCcE
Q psy1437 129 REIK-GKVGDNVLYLAHRY----------EIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSR 197 (232)
Q Consensus 129 ~~v~-~~~G~tLL~aa~~~----------gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g~R 197 (232)
++|. +.+|.|||+++..- .+...++|+ .|.||+|.+.|- |. . .| ...-|
T Consensus 22 y~v~~~~~~~tvLd~L~~Ik~~~~~~~~~~l~fr~sCr-~~iCGsCam~IN-G~-p-----------~~------~~~~~ 81 (250)
T PRK07570 22 YEVDDISPDMSFLEMLDVLNEQLIEKGEEPVAFDHDCR-EGICGMCGLVIN-GR-P-----------HG------PDRGT 81 (250)
T ss_pred EEecCCCCCCcHHHHHHHHHHHhhccCCCCeeEecccc-CCcCCcceeEEC-Cc-c-----------CC------CCccc
Confidence 4565 56899999999732 255679999 799999999984 42 1 11 12338
Q ss_pred EeeeeEEec
Q psy1437 198 LGCQIILTK 206 (232)
Q Consensus 198 LaCQ~~~~~ 206 (232)
|||++.+..
T Consensus 82 LAC~t~~~~ 90 (250)
T PRK07570 82 TTCQLHMRS 90 (250)
T ss_pred chhhhhhhh
Confidence 999987653
No 53
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=97.45 E-value=0.00019 Score=70.15 Aligned_cols=65 Identities=25% Similarity=0.446 Sum_probs=51.1
Q ss_pred CCCEEEEEecCCchHHHHHHHCCCCccCCCC-----CCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCCcEEe
Q psy1437 125 DGKRREIKGKVGDNVLYLAHRYEIPMEGACE-----ASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLG 199 (232)
Q Consensus 125 ~G~~~~v~~~~G~tLL~aa~~~gi~l~~~Cg-----G~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g~RLa 199 (232)
||+. +++++|+|||++|+++||++|+.|. ..|.|..|.|.|. |. . . ....|
T Consensus 4 dg~~--~~~~~g~~il~a~~~~gi~ip~~C~~~~l~~~g~Cr~C~v~v~-g~-~----------~----------~~~~a 59 (603)
T TIGR01973 4 DGKE--LEVPKGTTVLQACLSAGIEIPRFCYHEKLSIAGNCRMCLVEVE-KF-P----------D----------KPVAS 59 (603)
T ss_pred CCEE--EEeCCCCHHHHHHHHcCCCccccCCCCCCCCCCccccCEEEEC-CC-C----------C----------Ccccc
Confidence 6865 9999999999999999999999994 3689999999984 31 0 0 12458
Q ss_pred eeeEEecCCCceEEEec
Q psy1437 200 CQIILTKELEGIEVTLP 216 (232)
Q Consensus 200 CQ~~~~~dl~g~~V~lp 216 (232)
|++.+.. ||+|..-
T Consensus 60 C~~~~~~---gm~v~t~ 73 (603)
T TIGR01973 60 CATPVTD---GMKISTN 73 (603)
T ss_pred cCCCCCC---CCEEEeC
Confidence 8888876 5888753
No 54
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=97.42 E-value=0.0003 Score=62.42 Aligned_cols=59 Identities=17% Similarity=0.376 Sum_probs=41.2
Q ss_pred EEEecC-CchHHHHHHHC--C----CCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCCcEEeeee
Q psy1437 130 EIKGKV-GDNVLYLAHRY--E----IPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQI 202 (232)
Q Consensus 130 ~v~~~~-G~tLL~aa~~~--g----i~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g~RLaCQ~ 202 (232)
+|.+.+ |.|+|+++..- . +...++|+ .|.||+|.+.|- |. -||||++
T Consensus 65 ~v~~~~~~~tVLd~L~~Ik~~~D~sLsfr~sCr-~giCGsCam~IN-G~------------------------p~LAC~t 118 (276)
T PLN00129 65 KVDLNDCGPMVLDVLIKIKNEQDPSLTFRRSCR-EGICGSCAMNID-GK------------------------NTLACLT 118 (276)
T ss_pred EeCCCCCCchHHHHHHHHHHcCCCCeEEeccCC-CCCCCCCeeEEC-Cc------------------------ccccccc
Confidence 444444 78999998752 1 34568999 799999999983 41 2789998
Q ss_pred EEecCC-CceEEE
Q psy1437 203 ILTKEL-EGIEVT 214 (232)
Q Consensus 203 ~~~~dl-~g~~V~ 214 (232)
.+.+.. +.++|+
T Consensus 119 ~v~~~~~~~i~ie 131 (276)
T PLN00129 119 KIDRDESGPTTIT 131 (276)
T ss_pred cHhhcCCCcEEEE
Confidence 887542 235666
No 55
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=97.42 E-value=0.00022 Score=62.27 Aligned_cols=61 Identities=18% Similarity=0.370 Sum_probs=43.1
Q ss_pred EEEEecCCchHHHHHHHC------CCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCCcEEeeee
Q psy1437 129 REIKGKVGDNVLYLAHRY------EIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQI 202 (232)
Q Consensus 129 ~~v~~~~G~tLL~aa~~~------gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g~RLaCQ~ 202 (232)
+.|.+.+|.|||+++... .+...++|+ .|.||+|.|.|- |. .+|||++
T Consensus 27 ~~v~~~~~~tvl~~L~~ik~~~d~~l~fr~~C~-~giCGsC~v~In-G~------------------------~~laC~t 80 (244)
T PRK12385 27 YEVPYDETTSLLDALGYIKDNLAPDLSYRWSCR-MAICGSCGMMVN-NV------------------------PKLACKT 80 (244)
T ss_pred EEeeCCCCCcHHHHHHHHHHhcCCCceeccCCC-CCcCCCCcceEC-cc------------------------ChhhHhh
Confidence 567778999999999653 233457998 699999999995 41 0567877
Q ss_pred EEecCCCceEEEe
Q psy1437 203 ILTKELEGIEVTL 215 (232)
Q Consensus 203 ~~~~dl~g~~V~l 215 (232)
.+..--++++|+-
T Consensus 81 ~~~~~~~~~~ieP 93 (244)
T PRK12385 81 FLRDYTGGMKVEA 93 (244)
T ss_pred HHHHcCCCeEEee
Confidence 7664223577763
No 56
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=97.39 E-value=0.00014 Score=62.37 Aligned_cols=41 Identities=20% Similarity=0.398 Sum_probs=32.8
Q ss_pred EEEEEecCCchHHHHHHHCC------CCccCCCCCCcccccCEEEEecC
Q psy1437 128 RREIKGKVGDNVLYLAHRYE------IPMEGACEASLACTTCHVYVKHE 170 (232)
Q Consensus 128 ~~~v~~~~G~tLL~aa~~~g------i~l~~~CgG~G~CgtC~v~v~~g 170 (232)
.+++++.+|+|||+++...+ +....+|+ .|.||+|.|.| +|
T Consensus 16 ~~~v~~~~~~tvl~~l~~i~~~~~~~l~~~~~C~-~g~Cg~C~v~v-nG 62 (220)
T TIGR00384 16 SYEVPADEGMTVLDALNYIKDEQDPSLAFRRSCR-NGICGSCAMNV-NG 62 (220)
T ss_pred EEEEeCCCCCcHHHHHHHHHHhcCCCceeecccC-CCCCCCCeeEE-CC
Confidence 35677889999999999855 33458897 79999999987 45
No 57
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=97.35 E-value=0.00027 Score=69.58 Aligned_cols=51 Identities=27% Similarity=0.557 Sum_probs=43.0
Q ss_pred CceeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCC-----CCCcccccCEEEEecC
Q psy1437 114 DEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGAC-----EASLACTTCHVYVKHE 170 (232)
Q Consensus 114 ~~mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~C-----gG~G~CgtC~v~v~~g 170 (232)
.+|++|++ +|+. +.+++|+|||+++.++||.+|+.| +--++|-+|.|.+ +|
T Consensus 3 ~~~i~vti---dg~~--~~v~~G~tiL~a~~~~gI~iP~iCy~~~l~pi~sCd~ClVEi-dG 58 (978)
T COG3383 3 EKMITVTI---DGRS--IEVEEGTTILRAANRNGIEIPHICYHESLGPIGSCDTCLVEI-DG 58 (978)
T ss_pred ceeEEEEE---CCeE--EecCCChHHHHHHHhcCCcccceeccCCCCcccccceEEEEe-cC
Confidence 45788885 5866 889999999999999999999999 3348999999995 45
No 58
>TIGR03193 4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamma subunit. 4-hydroxybenzoyl-CoA reductase converts 4-hydroxybenzoyl-CoA to benzoyl-CoA, a common intermediate in the degradation of aromatic compounds. This protein family represents the gamma chain of this three-subunit enzyme.
Probab=97.34 E-value=0.00046 Score=55.78 Aligned_cols=44 Identities=18% Similarity=0.292 Sum_probs=38.2
Q ss_pred CCCCEEEEEecCCchHHHHHHHC-CC-CccCCCCCCcccccCEEEEe
Q psy1437 124 KDGKRREIKGKVGDNVLYLAHRY-EI-PMEGACEASLACTTCHVYVK 168 (232)
Q Consensus 124 ~~G~~~~v~~~~G~tLL~aa~~~-gi-~l~~~CgG~G~CgtC~v~v~ 168 (232)
.+|+.++++++++++|++.+++. |+ .....|+ .|.||.|-|.|.
T Consensus 6 vNG~~~~~~~~~~~~Ll~~LR~~lgltg~K~gC~-~G~CGACtVlvd 51 (148)
T TIGR03193 6 VNGRWREDAVADNMLLVDYLRDTVGLTGTKQGCD-GGECGACTVLVD 51 (148)
T ss_pred ECCEEEEeecCCCCcHHHHHHHhcCCCCCCCCCC-CCCCCCCEEEEC
Confidence 47888899999999999999984 65 3788998 799999999993
No 59
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=97.05 E-value=0.0013 Score=57.01 Aligned_cols=60 Identities=22% Similarity=0.426 Sum_probs=42.8
Q ss_pred EEEEecCCchHHHHHHHC------CCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCCcEEeeee
Q psy1437 129 REIKGKVGDNVLYLAHRY------EIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQI 202 (232)
Q Consensus 129 ~~v~~~~G~tLL~aa~~~------gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g~RLaCQ~ 202 (232)
++|...+|.|||+++..- .+...++|+ .|.||+|-+.|- |. .||||.+
T Consensus 22 yev~~~~~~~vLdaL~~Ik~e~d~~Lsfr~sCR-~gICGSCam~IN-G~------------------------prLAC~t 75 (234)
T COG0479 22 YEVPYDEGMTVLDALLYIKEEQDPTLSFRRSCR-EGICGSCAMNIN-GK------------------------PRLACKT 75 (234)
T ss_pred EEecCCCCCcHHHHHHHHHHhcCCccchhhhcc-CCcCCcceeEEC-Cc------------------------cccchhc
Confidence 456666999999998742 244679999 699999999883 41 1688888
Q ss_pred EEecCCCc-eEEE
Q psy1437 203 ILTKELEG-IEVT 214 (232)
Q Consensus 203 ~~~~dl~g-~~V~ 214 (232)
.+.+-.++ ++|+
T Consensus 76 ~~~~~~~~~i~ie 88 (234)
T COG0479 76 LMKDLEEGVITIE 88 (234)
T ss_pred hhhhccCCceEEE
Confidence 77654343 5555
No 60
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=97.03 E-value=0.0023 Score=56.96 Aligned_cols=55 Identities=15% Similarity=0.213 Sum_probs=40.5
Q ss_pred CceeEEEEEeCCC------CEEEEEecCCchHHHHHHHCCCCc------cCCCCCCcccccCEEEEecC
Q psy1437 114 DEIVNITFIDKDG------KRREIKGKVGDNVLYLAHRYEIPM------EGACEASLACTTCHVYVKHE 170 (232)
Q Consensus 114 ~~mv~Vt~~~~~G------~~~~v~~~~G~tLL~aa~~~gi~l------~~~CgG~G~CgtC~v~v~~g 170 (232)
+.+++|.+.-.+. +.++|++.+|.|||+++...+..+ .++|+ .|.||+|.|.| +|
T Consensus 6 ~~~~~~~i~R~~~~~~~~~~~~~v~~~~~~tvLd~L~~i~~~~d~tl~~~~~C~-~G~CgsC~v~I-NG 72 (279)
T PRK12576 6 EKEVIFKVKRYDPEKGSWWQEYKVKVDRFTQVTEALRRIKEEQDPTLSYRASCH-MAVCGSCGMKI-NG 72 (279)
T ss_pred CcEEEEEEEecCCCCCCeEEEEEEecCCCCHHHHHHHHhCCccCCCceecCCCC-CCCCCCCEEEE-CC
Confidence 4456666543222 336788899999999999977543 37897 89999999999 45
No 61
>TIGR03198 pucE xanthine dehydrogenase E subunit. This gene has been characterized in B. subtilis as the Iron-sulfur cluster binding-subunit of xanthine dehydrogenase (pucE), acting in conjunction with pucC, the FAD-binding subunit and pucD, the molybdopterin binding subunit. The more common XDH complex (GenProp0640) includes the xdhA gene as the Fe-S cluster binding component.
Probab=96.97 E-value=0.0018 Score=52.53 Aligned_cols=48 Identities=17% Similarity=0.367 Sum_probs=39.7
Q ss_pred EEEEeCCCCEEEEEecCCchHHHHHHHC-CCC-ccCCCCCCcccccCEEEEe
Q psy1437 119 ITFIDKDGKRREIKGKVGDNVLYLAHRY-EIP-MEGACEASLACTTCHVYVK 168 (232)
Q Consensus 119 Vt~~~~~G~~~~v~~~~G~tLL~aa~~~-gi~-l~~~CgG~G~CgtC~v~v~ 168 (232)
|+|. -+|+.+++.+.++.+|++.+++. |+. ....|+ .|.||.|.|.|.
T Consensus 4 i~f~-vNG~~~~~~~~~~~~Ll~~LR~~~~ltgtK~gC~-~G~CGACtVlvd 53 (151)
T TIGR03198 4 FRFT-VNGQAWEVAAVPTTRLSDLLRKELQLTGTKVSCG-IGRCGACSVLID 53 (151)
T ss_pred EEEE-ECCEEEEeecCCCcHHHHHHHhccCCCCCCCCCC-CCcCCccEEEEC
Confidence 4443 57988889999999999999985 764 678898 799999999994
No 62
>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
Probab=96.95 E-value=0.0021 Score=52.22 Aligned_cols=49 Identities=20% Similarity=0.370 Sum_probs=40.4
Q ss_pred EEEEEeCCCCEEEEEecCCchHHHHHHH-CCCC-ccCCCCCCcccccCEEEEe
Q psy1437 118 NITFIDKDGKRREIKGKVGDNVLYLAHR-YEIP-MEGACEASLACTTCHVYVK 168 (232)
Q Consensus 118 ~Vt~~~~~G~~~~v~~~~G~tLL~aa~~-~gi~-l~~~CgG~G~CgtC~v~v~ 168 (232)
.|+|. .+|+.+++.+.++.+|++++++ -|+. ....|+ .|.||.|-|.|.
T Consensus 3 ~i~lt-vNG~~~~~~~~p~~~Ll~~LRd~l~ltgtk~GC~-~g~CGACtVlvD 53 (156)
T COG2080 3 PITLT-VNGEPVELDVDPRTPLLDVLRDELGLTGTKKGCG-HGQCGACTVLVD 53 (156)
T ss_pred cEEEE-ECCeEEEEEeCCCChHHHHHHHhcCCCCcCCCCC-CccCCceEEEEC
Confidence 35543 5799999999999999999995 4554 678997 899999999885
No 63
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=96.94 E-value=0.0023 Score=56.13 Aligned_cols=40 Identities=20% Similarity=0.447 Sum_probs=33.9
Q ss_pred EEEEEecCCchHHHHHHHCCC------CccCCCCCCcccccCEEEEe
Q psy1437 128 RREIKGKVGDNVLYLAHRYEI------PMEGACEASLACTTCHVYVK 168 (232)
Q Consensus 128 ~~~v~~~~G~tLL~aa~~~gi------~l~~~CgG~G~CgtC~v~v~ 168 (232)
.++|.+.+|.|||++++.-+. ...++|+ .|.||+|.|.|-
T Consensus 21 ~y~v~~~~~~tvLd~L~~i~~~~d~~l~~r~~C~-~g~CGsCa~~In 66 (251)
T PRK12386 21 DYTVEVNEGEVVLDVIHRLQATQAPDLAVRWNCK-AGKCGSCSAEIN 66 (251)
T ss_pred EEEEeCCCCCCHHHHHHHhccccCCCCcccCCCC-CCcCCCCEEEEC
Confidence 467888899999999998664 4568998 799999999984
No 64
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=96.74 E-value=0.0014 Score=56.99 Aligned_cols=62 Identities=15% Similarity=0.206 Sum_probs=41.8
Q ss_pred EEEEecC-CchHHHHHHHCC-----CCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCCcEEeeee
Q psy1437 129 REIKGKV-GDNVLYLAHRYE-----IPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQI 202 (232)
Q Consensus 129 ~~v~~~~-G~tLL~aa~~~g-----i~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g~RLaCQ~ 202 (232)
++|.+.+ +.|+|+++..-. +...++|+ .|.||+|.+.|- |. -||||++
T Consensus 25 y~v~~~~~~~tvld~L~~ik~~d~~l~fr~sCr-~giCGsCa~~iN-G~------------------------~~LaC~t 78 (235)
T PRK12575 25 YEIAPRAEDRMLLDVLGRVKAQDETLSYRRSCR-EGICGSDAMNIN-GR------------------------NGLACLT 78 (235)
T ss_pred EEecCCCCCCcHHHHHHHHHhcCCCeeeeccCC-CCCCCCCeeEEC-Ce------------------------EcchhhC
Confidence 3454444 458999887532 33568999 799999999983 41 2789998
Q ss_pred EEecCCCceEEEec
Q psy1437 203 ILTKELEGIEVTLP 216 (232)
Q Consensus 203 ~~~~dl~g~~V~lp 216 (232)
.+.+--++++|+-.
T Consensus 79 ~~~~~~~~i~iePl 92 (235)
T PRK12575 79 NMQALPREIVLRPL 92 (235)
T ss_pred cHhHcCCCEEEeEC
Confidence 88742235777643
No 65
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=96.50 E-value=0.0049 Score=53.23 Aligned_cols=41 Identities=15% Similarity=0.172 Sum_probs=33.4
Q ss_pred EEEEEec-CCchHHHHHHHCC-CCc-----cCCCCCCcccccCEEEEecC
Q psy1437 128 RREIKGK-VGDNVLYLAHRYE-IPM-----EGACEASLACTTCHVYVKHE 170 (232)
Q Consensus 128 ~~~v~~~-~G~tLL~aa~~~g-i~l-----~~~CgG~G~CgtC~v~v~~g 170 (232)
.++|.+. +|.|||+++...+ ..+ ..+|+ .|.||+|.|.| +|
T Consensus 19 ~~~v~~~~~~~tvl~~L~~~~~~~~~~l~~~~~c~-~g~Cg~C~v~v-nG 66 (232)
T PRK05950 19 TYEVDVDECGPMVLDALIKIKNEIDPTLTFRRSCR-EGVCGSDAMNI-NG 66 (232)
T ss_pred EEEeCCCCCCCHHHHHHHHhCCccCCcceeeCCCC-CCCCCCCEEEE-CC
Confidence 3568888 9999999999997 333 47896 69999999999 45
No 66
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=96.37 E-value=0.021 Score=43.90 Aligned_cols=71 Identities=15% Similarity=0.207 Sum_probs=52.8
Q ss_pred chHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh-c--c--CChHHHHH--HHHHHHHH-HHHHHHHHHHHHHHH
Q psy1437 3 LPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA-N--S--SSDENVAA--WRQKAQQY-LNRAEVLKDKIQVMF 74 (232)
Q Consensus 3 ~~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~-~--e--~~~~~~~~--~~~k~~eY-~~RaE~lk~~~~~~~ 74 (232)
++..|..+.++|..+..+|+.+.|+.+|...+.++ ..+ . + ++...... ...+..+- ++++|.||..|...-
T Consensus 34 y~rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~-~ki~~Hpdy~~~~~~~~~~~~~~~~~~~il~~lE~Lk~~L~~rY 112 (115)
T PF08969_consen 34 YLRSANKLLREAEEYRQEGDEEQAYVLYMRYLTLV-EKIPKHPDYKKDKNSYKKLLGKKKLNEVILEELEKLKPSLKERY 112 (115)
T ss_dssp HHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-CCHCCSCCCCCTHHCCHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHhhcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999988 655 3 2 22232222 23445555 799999999997653
No 67
>PRK09800 putative hypoxanthine oxidase; Provisional
Probab=95.86 E-value=0.016 Score=59.65 Aligned_cols=49 Identities=16% Similarity=0.203 Sum_probs=38.7
Q ss_pred EEEEeCCCCEEEEEecCCchHHHHHHHCCCC-ccCCCCCCcccccCEEEEe
Q psy1437 119 ITFIDKDGKRREIKGKVGDNVLYLAHRYEIP-MEGACEASLACTTCHVYVK 168 (232)
Q Consensus 119 Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~-l~~~CgG~G~CgtC~v~v~ 168 (232)
|+|. -+|+.+++++.++++||+.+++.|+. ....|.+.|.||.|-|.|.
T Consensus 3 i~~~-vNg~~~~~~~~~~~~l~~~LR~~~~~~~k~g~c~~g~CGaCtv~~d 52 (956)
T PRK09800 3 IHFT-LNGAPQELTVNPGENVQKLLFNMGMHSVRNSDDGFGFAGSDAIIFN 52 (956)
T ss_pred EEEE-ECCEEEEEecCCCCCHHHHHHHCCCCccccCCCCcccCCCCEEEEC
Confidence 5553 57998899999999999999996654 3444334899999999984
No 68
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=95.82 E-value=0.012 Score=56.01 Aligned_cols=44 Identities=16% Similarity=0.302 Sum_probs=38.3
Q ss_pred CCCCEEEE-EecCCchHHHHHHHC-CCC-ccCCCCCCcccccCEEEEe
Q psy1437 124 KDGKRREI-KGKVGDNVLYLAHRY-EIP-MEGACEASLACTTCHVYVK 168 (232)
Q Consensus 124 ~~G~~~~v-~~~~G~tLL~aa~~~-gi~-l~~~CgG~G~CgtC~v~v~ 168 (232)
-+|+.+++ .+.++++|++.++++ |+. ....|+ .|.||.|-|.|.
T Consensus 5 ~Ng~~~~~~~~~~~~~ll~~lR~~~~l~g~k~gC~-~G~CGaCtv~~~ 51 (467)
T TIGR02963 5 LNGETVTLSDVDPTRTLLDYLREDAGLTGTKEGCA-EGDCGACTVVVG 51 (467)
T ss_pred ECCEEEEeecCCCCCCHHHHHHHhcCCCCCCcccC-CCCCCceEEEEE
Confidence 57988888 699999999999974 764 789998 699999999995
No 69
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.84 E-value=0.074 Score=31.12 Aligned_cols=30 Identities=20% Similarity=0.144 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhhhhcCHHHHHHHHHHHHHH
Q psy1437 7 VINAAQMAVKFDEENQDEIAAYYYQAAARF 36 (232)
Q Consensus 7 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 36 (232)
|..+..+|..+...|+|++|+.+|++|+++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 345678999999999999999999999974
No 70
>TIGR03313 Se_sel_red_Mo probable selenate reductase, molybdenum-binding subunit. Our comparative genomics suggests this protein family to be a subunit of a selenium-dependent molybdenum hydroxylase, although the substrate is not specified. This protein is suggested by Bebien, et al., to be the molybdenum-binding subunit of a molydbopterin-containing selenate reductase. Xi, et al, however, show that mutation of this gene in E. coli conferred sensitivity to adenine, suggesting a defect in purine interconversion. This finding, plus homology of nearby genes in a 23-gene purine catabolism region in E. coli to xanthine dehydrogase subunits suggests xanthine dehydrogenase activity.
Probab=94.58 E-value=0.053 Score=55.95 Aligned_cols=44 Identities=14% Similarity=0.151 Sum_probs=37.2
Q ss_pred CCCCEEEEEecCCchHHHHHHHCCCC-ccC-CCCCCcccccCEEEEe
Q psy1437 124 KDGKRREIKGKVGDNVLYLAHRYEIP-MEG-ACEASLACTTCHVYVK 168 (232)
Q Consensus 124 ~~G~~~~v~~~~G~tLL~aa~~~gi~-l~~-~CgG~G~CgtC~v~v~ 168 (232)
.+|+.+++++.++++||+.+++.|+. +.. .|+ .|.||.|-|.|.
T Consensus 3 ~Ng~~~~~~~~~~~~l~~~LR~~~l~~~k~~~c~-~g~CGaCtv~~d 48 (951)
T TIGR03313 3 LNGAPQTLECKLGENVQTLLFNMGMHSVRNSDDG-FGFAGSDAILFN 48 (951)
T ss_pred ECCEEEEEecCCCCCHHHHHHHCCCCCCcCCCCC-cccCCCCEEEEC
Confidence 36888889999999999999998764 555 576 899999999984
No 71
>KOG2282|consensus
Probab=93.87 E-value=0.099 Score=50.05 Aligned_cols=55 Identities=20% Similarity=0.366 Sum_probs=42.6
Q ss_pred CCCCCCceeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCC-----CcccccCEEEEec
Q psy1437 109 DPKSEDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEA-----SLACTTCHVYVKH 169 (232)
Q Consensus 109 ~~~~~~~mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG-----~G~CgtC~v~v~~ 169 (232)
.|.+ ++.+.|.+ +|.. |.+.+|.|+|+++...|++||-.|-- .|.|..|.|.|..
T Consensus 26 ~~a~-~~~ievfv---d~~~--v~v~pg~tvlqac~~~gv~iprfcyh~rlsvagncrmclvevek 85 (708)
T KOG2282|consen 26 TPAS-PNKIEVFV---DDQS--VMVEPGTTVLQACAKVGVDIPRFCYHERLSVAGNCRMCLVEVEK 85 (708)
T ss_pred ccCC-ccceEEEE---CCee--EeeCCCcHHHHHHHHhCCCcchhhhhhhhhhccceeEEEEEecc
Confidence 4444 34466653 5755 89999999999999999999999931 2789999998864
No 72
>PLN00192 aldehyde oxidase
Probab=93.38 E-value=0.13 Score=55.01 Aligned_cols=48 Identities=19% Similarity=0.389 Sum_probs=40.0
Q ss_pred EEEEeCCCCEEEE-EecCCchHHHHHHHC-CCC-ccCCCCCCcccccCEEEEe
Q psy1437 119 ITFIDKDGKRREI-KGKVGDNVLYLAHRY-EIP-MEGACEASLACTTCHVYVK 168 (232)
Q Consensus 119 Vt~~~~~G~~~~v-~~~~G~tLL~aa~~~-gi~-l~~~CgG~G~CgtC~v~v~ 168 (232)
|+|. .+|+.+++ .+.++.|||+.++++ |+. ....|+ .|.||.|-|.|.
T Consensus 6 i~~~-vNg~~~~~~~~~p~~~Ll~~LR~~~~ltgtK~gC~-~G~CGaCtV~v~ 56 (1344)
T PLN00192 6 LVFA-VNGERFELSSVDPSTTLLEFLRTQTPFKSVKLGCG-EGGCGACVVLLS 56 (1344)
T ss_pred EEEE-ECCEEEEeccCCCCCcHHHHHHHhhCCCCcCCCCC-CCcCCCcEEEEe
Confidence 5553 57988888 689999999999975 764 778998 799999999995
No 73
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=93.32 E-value=0.11 Score=55.49 Aligned_cols=48 Identities=17% Similarity=0.362 Sum_probs=38.9
Q ss_pred EEEEeCCCCEE-EEEecCCchHHHHHHHC-CCC-ccCCCCCCcccccCEEEEe
Q psy1437 119 ITFIDKDGKRR-EIKGKVGDNVLYLAHRY-EIP-MEGACEASLACTTCHVYVK 168 (232)
Q Consensus 119 Vt~~~~~G~~~-~v~~~~G~tLL~aa~~~-gi~-l~~~CgG~G~CgtC~v~v~ 168 (232)
|+|. .+|+.+ ...+.+++|||+.+++. |+. ....|+ .|.||.|-|.|.
T Consensus 3 ~~~~-~Ng~~~~~~~~~~~~~ll~~LR~~~~l~gtk~gC~-~G~CGaCtV~~~ 53 (1330)
T TIGR02969 3 LLFY-VNGRKVVEKNVDPETMLLPYLRKKLRLTGTKYGCG-GGGCGACTVMIS 53 (1330)
T ss_pred EEEE-ECCEEEEeccCCCCCcHHHHHHhhcCCCCCCCCcC-CCCCCCcEEEEC
Confidence 4553 578875 45789999999999974 764 778998 699999999996
No 74
>TIGR03311 Se_dep_Molyb_1 selenium-dependent molybdenum hydroxylase 1. Members of this protein family show full length homology to the molybdenum-containing aldehyde oxido-reductase of Desulfovibrio gigas. Members, however, are found only within species that have, and near those genes that encode, a set of predicted accessory proteins for selenium-dependent molybdenum hydroxylases. The best known examples of such enzymes are forms of xanthine dehydrogenase and purine hydroxylase; this family appears to be another such enzyme.
Probab=93.20 E-value=0.12 Score=52.86 Aligned_cols=42 Identities=21% Similarity=0.465 Sum_probs=35.3
Q ss_pred CCCCEEEEEecCCchHHHHHHHC-CC-CccCCCCCCcccccCEEEEe
Q psy1437 124 KDGKRREIKGKVGDNVLYLAHRY-EI-PMEGACEASLACTTCHVYVK 168 (232)
Q Consensus 124 ~~G~~~~v~~~~G~tLL~aa~~~-gi-~l~~~CgG~G~CgtC~v~v~ 168 (232)
.+|. .+++.++++||+.+++. |+ .....|+ .|.||.|-|.|.
T Consensus 5 ~ng~--~~~~~~~~~l~~~lr~~~~~~~~k~gc~-~g~cgactv~~d 48 (848)
T TIGR03311 5 VNGR--EVDVNEEKKLLEFLREDLRLTGVKNGCG-EGACGACTVIVN 48 (848)
T ss_pred ECCE--EeeCCCCCcHHHHHHHhcCCCcCCCCCC-CCCCCCcEEEEC
Confidence 4575 48889999999999974 76 4789998 799999999993
No 75
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.07 E-value=0.2 Score=30.10 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=21.3
Q ss_pred HHHHHHHhhhhcCHHHHHHHHHHHHH
Q psy1437 10 AAQMAVKFDEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 10 ~~~~Av~~D~~g~~~~A~~~Y~~ai~ 35 (232)
+...|.-+...|+|++|+.+|++|+.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45677888899999999999999873
No 76
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=92.79 E-value=0.37 Score=50.01 Aligned_cols=71 Identities=17% Similarity=0.139 Sum_probs=50.1
Q ss_pred EEEEeCCCCEEEEEecCCchHHHHHHHCCCCcc-----------CCCCCCcccccCEEEEecCCccCCCCCChhHHhhcC
Q psy1437 119 ITFIDKDGKRREIKGKVGDNVLYLAHRYEIPME-----------GACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLD 187 (232)
Q Consensus 119 Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~-----------~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~ 187 (232)
|+|. -+|+. +++.+|+||..|++.+|+.+- ..|. .|.|..|.|.|..|..
T Consensus 13 ~~~~-~dg~~--~~~~~g~t~a~al~a~g~~~~~~s~~~~~prg~~c~-~~~~~~c~v~i~~~~~--------------- 73 (985)
T TIGR01372 13 LRFT-FDGKS--YSGFAGDTLASALLANGVHLVGRSFKYHRPRGILTA-GVEEPNALVTVGSGAQ--------------- 73 (985)
T ss_pred EEEE-ECCEE--eecCCCCHHHHHHHhCCCeeecccCCCCCCCccccc-CccCCCeEEEECCCcC---------------
Confidence 4443 47866 999999999999999997642 3686 4789999999954410
Q ss_pred CcCCCCCCcEEeeeeEEecCCCceEEEec
Q psy1437 188 LAPFLKDNSRLGCQIILTKELEGIEVTLP 216 (232)
Q Consensus 188 ~~~~~~~g~RLaCQ~~~~~dl~g~~V~lp 216 (232)
....+.||++.+.. ||+|+-.
T Consensus 74 -----~~~~~~ac~~~~~~---gm~~~~~ 94 (985)
T TIGR01372 74 -----REPNTRATTQELYD---GLVATSQ 94 (985)
T ss_pred -----CCCCccceeEEccc---CCEEecc
Confidence 01113488888776 4877654
No 77
>KOG2709|consensus
Probab=92.46 E-value=0.43 Score=44.76 Aligned_cols=71 Identities=20% Similarity=0.197 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh--cc--CChHHHHH------HHHH----HHHHHHHHHHHHHH
Q psy1437 4 PEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA--NS--SSDENVAA------WRQK----AQQYLNRAEVLKDK 69 (232)
Q Consensus 4 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~--~e--~~~~~~~~------~~~k----~~eY~~RaE~lk~~ 69 (232)
+..|..++.+++-.|..+..++|+.+|.+||.++..-+ -+ +++.+-.. +.+| .++-..|.+-|++.
T Consensus 19 yk~A~~~V~~gl~~dE~~~~e~a~~~Ye~gl~~i~~GIpvg~k~k~~~~~~~W~dAcaliQklkes~~~vr~Rl~vL~kq 98 (560)
T KOG2709|consen 19 YKGAYASVEQGLCYDEVNDWENALAMYEKGLNLIVEGIPVGEKMKNARKSEMWKDACALIQKLKESKSSVRHRLNVLKKQ 98 (560)
T ss_pred HHHHHHHHHhhcchhhhcCHHHHHHHHHHHHHHHHhcCcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45788899999999999999999999999999999844 12 22222222 3344 44556688888877
Q ss_pred HHHHH
Q psy1437 70 IQVMF 74 (232)
Q Consensus 70 ~~~~~ 74 (232)
++...
T Consensus 99 kqsid 103 (560)
T KOG2709|consen 99 KQSID 103 (560)
T ss_pred hcccc
Confidence 65443
No 78
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.01 E-value=0.63 Score=26.87 Aligned_cols=28 Identities=14% Similarity=0.215 Sum_probs=23.8
Q ss_pred HHHHHHHHhhhhcCHHHHHHHHHHHHHH
Q psy1437 9 NAAQMAVKFDEENQDEIAAYYYQAAARF 36 (232)
Q Consensus 9 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 36 (232)
.+...|.-+...|++++|+.+|++|+++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3556788889999999999999999874
No 79
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=90.69 E-value=0.36 Score=32.52 Aligned_cols=32 Identities=16% Similarity=0.176 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHH
Q psy1437 5 EEVINAAQMAVKFDEENQDEIAAYYYQAAARF 36 (232)
Q Consensus 5 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 36 (232)
++|..+..+|..+=..|+|++|+.+|.+|+++
T Consensus 1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~ 32 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL 32 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 35778889999999999999999999999974
No 80
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=89.80 E-value=0.94 Score=25.92 Aligned_cols=28 Identities=14% Similarity=0.129 Sum_probs=21.9
Q ss_pred HHHHHHHHhhhhcCHHHHHHHHHHHHHH
Q psy1437 9 NAAQMAVKFDEENQDEIAAYYYQAAARF 36 (232)
Q Consensus 9 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 36 (232)
-+-..|.-+=..|+|++|+.+|++|+++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3456677788899999999999999864
No 81
>PF12063 DUF3543: Domain of unknown function (DUF3543); InterPro: IPR022708 This domain belonging to serine/threonine-protein kinases is functionally uncharacterised. This domain is found in eukaryotes. It is typically between 217 to 291 amino acids in length and is found associated with PF00069 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0004674 protein serine/threonine kinase activity
Probab=89.66 E-value=0.91 Score=39.54 Aligned_cols=51 Identities=24% Similarity=0.292 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHhc-------cCC---------hH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 23 DEIAAYYYQAAARFLLETAN-------SSS---------DE---NVAAWRQKAQQYLNRAEVLKDKIQVM 73 (232)
Q Consensus 23 ~~~A~~~Y~~ai~~l~~~~~-------e~~---------~~---~~~~~~~k~~eY~~RaE~lk~~~~~~ 73 (232)
..||+.+|.+|+.+|..++. .+. .. ..+-+|+++++.++|||.|+..+...
T Consensus 69 ~~E~LVLYvKaL~lLa~am~~a~~~w~~~~~~~~~~~~S~~vn~vVqwlr~rfneclekae~lr~~l~~~ 138 (238)
T PF12063_consen 69 SAEALVLYVKALSLLAKAMDIASAWWYSKNRGSGSLNPSSRVNQVVQWLRERFNECLEKAEFLRLRLQEA 138 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999988762 110 11 13358999999999999999999433
No 82
>KOG2880|consensus
Probab=89.65 E-value=1.9 Score=39.70 Aligned_cols=67 Identities=22% Similarity=0.210 Sum_probs=49.3
Q ss_pred chHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh-c--cC---ChHHHHHHHHHH-HHHHHHHHHHHHHH
Q psy1437 3 LPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA-N--SS---SDENVAAWRQKA-QQYLNRAEVLKDKI 70 (232)
Q Consensus 3 ~~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~-~--e~---~~~~~~~~~~k~-~eY~~RaE~lk~~~ 70 (232)
++..|.++.++|--+-.+||++.|+.+|..=+.+|+.-+ + .+ -+.++ -|+.|+ .+-+.|+++|+..+
T Consensus 31 yfRsg~ei~rmA~VY~~EgN~enafvLy~ry~tLfiEkipkHrDy~s~k~ek~-d~~~klk~~~~p~~deL~~~l 104 (424)
T KOG2880|consen 31 YFRSGTEILRMANVYLEEGNVENAFVLYLRYITLFIEKIPKHRDYRSVKPEKE-DIRKKLKEEAFPRIDELKAKL 104 (424)
T ss_pred hhhhhHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHhcccCcchhhhchhHH-HHHHHHHHHhhhhHHHHHHHH
Confidence 578899999999999999999999999999999999866 2 11 12222 344443 34566777776554
No 83
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=88.90 E-value=4 Score=27.99 Aligned_cols=34 Identities=21% Similarity=0.180 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh
Q psy1437 7 VINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA 41 (232)
Q Consensus 7 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~ 41 (232)
|.-+-..|.-+=..|+|++|+.+|++|+++ ....
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~ 38 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDI-EEQL 38 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHH
Confidence 445566777778899999999999999998 5443
No 84
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=86.00 E-value=1.6 Score=30.02 Aligned_cols=31 Identities=19% Similarity=0.165 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhhhhcCHHHHHHHHHHHHHHH
Q psy1437 7 VINAAQMAVKFDEENQDEIAAYYYQAAARFL 37 (232)
Q Consensus 7 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l 37 (232)
|..+...|.-+...|+|++|+.+|++|++++
T Consensus 46 a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 46 ANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 4445555666666677777777777776654
No 85
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.85 E-value=2.2 Score=25.31 Aligned_cols=35 Identities=11% Similarity=0.022 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh
Q psy1437 7 VINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA 41 (232)
Q Consensus 7 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~ 41 (232)
|..+-..|.-+=..|+|++|+.+|.++++....++
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 36 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLL 36 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHh
Confidence 34556778888889999999999999998766554
No 86
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=83.66 E-value=7.4 Score=34.16 Aligned_cols=67 Identities=22% Similarity=0.234 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhhhh-cCHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 6 EVINAAQMAVKFDEE-NQDEIAAYYYQAAARFLLETANSSSDENVAAWRQKAQQYLNRAEVLKDKIQVMFL 75 (232)
Q Consensus 6 ~A~~~~~~Av~~D~~-g~~~~A~~~Y~~ai~~l~~~~~e~~~~~~~~~~~k~~eY~~RaE~lk~~~~~~~~ 75 (232)
.|.-+.+-|.-+.+. |++++|+.+|++|++++.. +..+........++....-+..+..+.+..-.+
T Consensus 113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~---e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~ 180 (282)
T PF14938_consen 113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQ---EGSPHSAAECLLKAADLYARLGRYEEAIEIYEE 180 (282)
T ss_dssp HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---CCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 344555666667777 8999999999999998875 223344445566666666666655555544433
No 87
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=82.64 E-value=2.1 Score=22.52 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=21.7
Q ss_pred HHHHHHHhhhhcCHHHHHHHHHHHHH
Q psy1437 10 AAQMAVKFDEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 10 ~~~~Av~~D~~g~~~~A~~~Y~~ai~ 35 (232)
+...|.-+-..|++++|+.+|++++.
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 45677788888999999999998875
No 88
>PF12063 DUF3543: Domain of unknown function (DUF3543); InterPro: IPR022708 This domain belonging to serine/threonine-protein kinases is functionally uncharacterised. This domain is found in eukaryotes. It is typically between 217 to 291 amino acids in length and is found associated with PF00069 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0004674 protein serine/threonine kinase activity
Probab=80.59 E-value=13 Score=32.45 Aligned_cols=38 Identities=18% Similarity=0.129 Sum_probs=32.5
Q ss_pred chHHHHHHHHHHHHhhhhc-CHHHHHHHHHHHHHHHHHHh
Q psy1437 3 LPEEVINAAQMAVKFDEEN-QDEIAAYYYQAAARFLLETA 41 (232)
Q Consensus 3 ~~~~A~~~~~~Av~~D~~g-~~~~A~~~Y~~ai~~l~~~~ 41 (232)
+++.|+++.+.|.-.+=-| +.+.+...|..|+- |+.++
T Consensus 161 iYdrALemsr~AA~~El~g~~~~~ce~~Y~tA~~-lLe~L 199 (238)
T PF12063_consen 161 IYDRALEMSRTAAVDELFGENLEGCEQRYETAIW-LLEAL 199 (238)
T ss_pred HHHHHHHHHHHHHHHHHhCcCHhHHHHHHHHHHH-HHHHH
Confidence 4688999999999999889 99999999999994 44444
No 89
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in
Probab=79.86 E-value=9.9 Score=34.74 Aligned_cols=36 Identities=19% Similarity=0.140 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh
Q psy1437 6 EVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA 41 (232)
Q Consensus 6 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~ 41 (232)
+|...-..|...+.+++|.+|+-+++.|.+.|..+.
T Consensus 252 ~A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l~~~~ 287 (346)
T cd09247 252 EARSQLYLARRLKEAGHIGVAVGVLREALRNLKKKL 287 (346)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 566677789999999999999999999999876655
No 90
>KOG2997|consensus
Probab=79.68 E-value=1.9 Score=39.22 Aligned_cols=33 Identities=21% Similarity=0.224 Sum_probs=30.5
Q ss_pred chHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHH
Q psy1437 3 LPEEVINAAQMAVKFDEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 3 ~~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 35 (232)
...+|+.+=.+||+.++.|+.-+||..|..|.+
T Consensus 15 ~~kkA~~l~~~av~~Eq~G~l~dai~fYR~Alq 47 (366)
T KOG2997|consen 15 LAKKAIALYEKAVLKEQDGSLYDAINFYRDALQ 47 (366)
T ss_pred HHHHHHHHHHHHHHHhhcCcHHHHHHHHHhhhc
Confidence 367899999999999999999999999999875
No 91
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=78.68 E-value=4.2 Score=28.78 Aligned_cols=25 Identities=16% Similarity=0.139 Sum_probs=20.9
Q ss_pred EEEeCCCCEEEEEecCCchHHHHHH
Q psy1437 120 TFIDKDGKRREIKGKVGDNVLYLAH 144 (232)
Q Consensus 120 t~~~~~G~~~~v~~~~G~tLL~aa~ 144 (232)
++..|+|....|.+.+|.|+.|++.
T Consensus 3 ~V~LPng~~t~V~vrpg~ti~d~L~ 27 (72)
T cd01760 3 RVYLPNGQRTVVPVRPGMSVRDVLA 27 (72)
T ss_pred EEECcCCCeEEEEECCCCCHHHHHH
Confidence 3445999998999999999998765
No 92
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=77.42 E-value=12 Score=34.17 Aligned_cols=36 Identities=6% Similarity=-0.015 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh
Q psy1437 6 EVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA 41 (232)
Q Consensus 6 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~ 41 (232)
.|+..-..|.....+++|.+|+..++.|.+.+..+.
T Consensus 254 ~a~A~y~~a~~~~e~~k~GeaIa~L~~A~~~~~~a~ 289 (346)
T cd09240 254 HALAEYHQSLVAKAQKKFGEEIARLQHALELIKTAQ 289 (346)
T ss_pred HHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHH
Confidence 366667788999999999999999999999776654
No 93
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=76.57 E-value=1.8 Score=37.34 Aligned_cols=32 Identities=19% Similarity=0.378 Sum_probs=23.9
Q ss_pred hHHHHHHHCCCCc------cCCCCCCcccccCEEEEecC
Q psy1437 138 NVLYLAHRYEIPM------EGACEASLACTTCHVYVKHE 170 (232)
Q Consensus 138 tLL~aa~~~gi~l------~~~CgG~G~CgtC~v~v~~g 170 (232)
.+.+.+.++|++. ...|| .|.||+|.|.+..+
T Consensus 195 ~v~~~l~~~Gv~~~~~~e~~m~cg-~G~C~~C~~~~~~~ 232 (250)
T PRK00054 195 KVVEILKEKKVPAYVSLERRMKCG-IGACGACVCDTETG 232 (250)
T ss_pred HHHHHHHHcCCcEEEEEcccccCc-CcccCcCCcccCCC
Confidence 5666777888763 35686 89999999986543
No 94
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=75.89 E-value=12 Score=34.29 Aligned_cols=36 Identities=14% Similarity=-0.039 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh
Q psy1437 6 EVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA 41 (232)
Q Consensus 6 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~ 41 (232)
.|+..-..|.....+++|.+|+..++.|.+.+..+.
T Consensus 236 ~A~A~y~~a~~~~e~~k~Ge~Ia~L~~A~~~l~~a~ 271 (355)
T cd09241 236 KAAAHYRMALVALEKSKYGEEVARLRVALAACKEAL 271 (355)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 466777889999999999999999999999988876
No 95
>KOG0547|consensus
Probab=75.03 E-value=3 Score=40.18 Aligned_cols=30 Identities=20% Similarity=0.221 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhhhhcCHHHHHHHHHHHHHH
Q psy1437 7 VINAAQMAVKFDEENQDEIAAYYYQAAARF 36 (232)
Q Consensus 7 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 36 (232)
|..+=++.=.+=.+|+|++||.||++||++
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l 144 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIEL 144 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhc
Confidence 344444444555667899999999999975
No 96
>KOG4648|consensus
Probab=74.54 E-value=2.4 Score=39.31 Aligned_cols=33 Identities=12% Similarity=0.083 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHH
Q psy1437 4 PEEVINAAQMAVKFDEENQDEIAAYYYQAAARF 36 (232)
Q Consensus 4 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 36 (232)
+.++.++-.+.-++=++|+|+|||.||..||.+
T Consensus 94 L~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~ 126 (536)
T KOG4648|consen 94 LKKASEIKERGNTYFKQGKYEEAIDCYSTAIAV 126 (536)
T ss_pred HHhhHHHHHhhhhhhhccchhHHHHHhhhhhcc
Confidence 344555555666677889999999999998853
No 97
>KOG1840|consensus
Probab=73.98 E-value=23 Score=34.31 Aligned_cols=69 Identities=20% Similarity=0.156 Sum_probs=47.9
Q ss_pred chHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHH--HHHHHHHHHHHHHHHH
Q psy1437 3 LPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETANSSSDENVAAWRQK--AQQYLNRAEVLKDKIQ 71 (232)
Q Consensus 3 ~~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~e~~~~~~~~~~~k--~~eY~~RaE~lk~~~~ 71 (232)
...-|+-+.+.|+.+.+.|+|.||..||..|+++..+.+-...+.....+.+- +-+-++++|+-+.+++
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q 349 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQ 349 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 34557788899999999999999999999999988884322233333333332 3344667776666665
No 98
>KOG0545|consensus
Probab=73.59 E-value=6 Score=35.14 Aligned_cols=40 Identities=13% Similarity=0.065 Sum_probs=31.4
Q ss_pred HHHHHH-HHHHHhhhhcCHHHHHHHHHHHHHHHHHHh-ccCC
Q psy1437 6 EVINAA-QMAVKFDEENQDEIAAYYYQAAARFLLETA-NSSS 45 (232)
Q Consensus 6 ~A~~~~-~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~-~e~~ 45 (232)
+|+..+ ++.=++=+.|+|.||..+|++||-.|-.+. +|++
T Consensus 176 kav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP 217 (329)
T KOG0545|consen 176 KAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKP 217 (329)
T ss_pred hhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCC
Confidence 344444 566677889999999999999999988876 6754
No 99
>KOG1840|consensus
Probab=72.81 E-value=31 Score=33.44 Aligned_cols=57 Identities=19% Similarity=0.236 Sum_probs=44.0
Q ss_pred HHHHhhhhcCHHHHHHHHHHHHHHHHHHhccCChHHHHHHHH------------HHHHHHHHHHHHHHH
Q psy1437 13 MAVKFDEENQDEIAAYYYQAAARFLLETANSSSDENVAAWRQ------------KAQQYLNRAEVLKDK 69 (232)
Q Consensus 13 ~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~e~~~~~~~~~~~------------k~~eY~~RaE~lk~~ 69 (232)
-|+-+=+.++|.+|+.+|++|+..+....-+.++..-..+.+ .+.+|++||=.|.+.
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~ 315 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEK 315 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH
Confidence 344445788999999999999999887764456666555443 478999999999888
No 100
>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the
Probab=72.47 E-value=14 Score=33.70 Aligned_cols=36 Identities=19% Similarity=0.187 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh
Q psy1437 6 EVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA 41 (232)
Q Consensus 6 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~ 41 (232)
.|+..-..|..++.+++|.+|+.+++.|.+.|..+.
T Consensus 243 ~A~A~y~~a~~~~~~~k~GeaIa~L~~A~~~l~~a~ 278 (348)
T cd09242 243 KSLAAYYHALALEAAGKYGEAIAYLTQAESILKEAN 278 (348)
T ss_pred HHHHHHHHHHHhHHhccHHHHHHHHHHHHHHHHHHH
Confidence 466777889999999999999999999999887765
No 101
>smart00455 RBD Raf-like Ras-binding domain.
Probab=72.18 E-value=8 Score=27.05 Aligned_cols=23 Identities=22% Similarity=0.134 Sum_probs=20.0
Q ss_pred EeCCCCEEEEEecCCchHHHHHH
Q psy1437 122 IDKDGKRREIKGKVGDNVLYLAH 144 (232)
Q Consensus 122 ~~~~G~~~~v~~~~G~tLL~aa~ 144 (232)
..|+|+...|.+++|.||.|++.
T Consensus 5 ~LP~~~~~~V~vrpg~tl~e~L~ 27 (70)
T smart00455 5 HLPDNQRTVVKVRPGKTVRDALA 27 (70)
T ss_pred ECCCCCEEEEEECCCCCHHHHHH
Confidence 35999998999999999998765
No 102
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=71.45 E-value=11 Score=35.36 Aligned_cols=51 Identities=20% Similarity=0.366 Sum_probs=37.8
Q ss_pred eeEEEEEeCCCCEEEE-EecCCchHHHHHH-HCCCC-ccCCCCCCcccccCEEEEe
Q psy1437 116 IVNITFIDKDGKRREI-KGKVGDNVLYLAH-RYEIP-MEGACEASLACTTCHVYVK 168 (232)
Q Consensus 116 mv~Vt~~~~~G~~~~v-~~~~G~tLL~aa~-~~gi~-l~~~CgG~G~CgtC~v~v~ 168 (232)
|-.|.|+ .+|+.+.+ .+.+.+|||+-++ ..++. -.-.|. .|-||.|-|-|-
T Consensus 6 ~~~irf~-lN~~~~~l~~v~P~~TlLd~LR~d~~ltGtKEGCA-EGDCGACTVlVg 59 (493)
T COG4630 6 RNTIRFL-LNGETRVLSDVPPTTTLLDYLRLDRRLTGTKEGCA-EGDCGACTVLVG 59 (493)
T ss_pred cceeEEE-ecCceEEeecCCcchHHHHHHHHhccccccccccc-CCCcCceEEEEE
Confidence 4457776 56665444 5788999999998 55554 456797 799999999875
No 103
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=71.10 E-value=22 Score=27.36 Aligned_cols=18 Identities=28% Similarity=0.071 Sum_probs=8.2
Q ss_pred hhhhcCHHHHHHHHHHHH
Q psy1437 17 FDEENQDEIAAYYYQAAA 34 (232)
Q Consensus 17 ~D~~g~~~~A~~~Y~~ai 34 (232)
+-..|+|++|+.+++.++
T Consensus 72 ~~~~~~~~~a~~~~~~~l 89 (146)
T PF03704_consen 72 LLEAGDYEEALRLLQRAL 89 (146)
T ss_dssp HHHTT-HHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHH
Confidence 444455555555544443
No 104
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=71.04 E-value=5.1 Score=31.08 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=22.9
Q ss_pred HHHHHHhhhhcCHHHHHHHHHHHHH
Q psy1437 11 AQMAVKFDEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 11 ~~~Av~~D~~g~~~~A~~~Y~~ai~ 35 (232)
-..|..+|..|+.++|+.+|.+|++
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~ 29 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALA 29 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4678999999999999999999987
No 105
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=70.31 E-value=10 Score=26.59 Aligned_cols=27 Identities=11% Similarity=0.198 Sum_probs=20.7
Q ss_pred eEEEEEeCCCCEEEEEecCCchHHHHHHH
Q psy1437 117 VNITFIDKDGKRREIKGKVGDNVLYLAHR 145 (232)
Q Consensus 117 v~Vt~~~~~G~~~~v~~~~G~tLL~aa~~ 145 (232)
+.|. -|+|+...|.+.+|.|+.|++..
T Consensus 3 ~~v~--LP~~q~t~V~vrpg~ti~d~L~~ 29 (71)
T PF02196_consen 3 CRVH--LPNGQRTVVQVRPGMTIRDALSK 29 (71)
T ss_dssp EEEE--ETTTEEEEEEE-TTSBHHHHHHH
T ss_pred EEEE--CCCCCEEEEEEcCCCCHHHHHHH
Confidence 4454 49999889999999999887653
No 106
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=68.40 E-value=3.2 Score=36.72 Aligned_cols=39 Identities=18% Similarity=0.125 Sum_probs=28.9
Q ss_pred EEecCC--chHHHHHHHCCCC---c------cCCCCCCcccccCEEEEecC
Q psy1437 131 IKGKVG--DNVLYLAHRYEIP---M------EGACEASLACTTCHVYVKHE 170 (232)
Q Consensus 131 v~~~~G--~tLL~aa~~~gi~---l------~~~CgG~G~CgtC~v~v~~g 170 (232)
+-++++ +.+.+.+.+.|++ + ...|| .|.||.|+|....|
T Consensus 217 iCGP~~m~~~v~~~L~~~Gv~~~~i~~~l~~~m~cg-~g~c~~c~~~~~~~ 266 (289)
T PRK08345 217 ICGPPVMYKFVFKELINRGYRPERIYVTLERRMRCG-IGKCGHCIVGTSTS 266 (289)
T ss_pred EECCHHHHHHHHHHHHHcCCCHHHEEEEehhccccc-CcccCCCccCCCCc
Confidence 444444 4677888889986 2 35797 89999999997665
No 107
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=68.22 E-value=10 Score=25.15 Aligned_cols=18 Identities=28% Similarity=0.274 Sum_probs=13.6
Q ss_pred chHHHHHHHHHHHHhhhh
Q psy1437 3 LPEEVINAAQMAVKFDEE 20 (232)
Q Consensus 3 ~~~~A~~~~~~Av~~D~~ 20 (232)
-.++|+..-++|+++|..
T Consensus 18 ~~~~A~~~~~~ai~~~p~ 35 (69)
T PF13414_consen 18 DYEEAIEYFEKAIELDPN 35 (69)
T ss_dssp HHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHHcCCC
Confidence 357788888888888753
No 108
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=68.05 E-value=3.8 Score=34.81 Aligned_cols=31 Identities=16% Similarity=0.236 Sum_probs=23.8
Q ss_pred chHHHHHHHCCCCc------cCCCCCCcccccCEEEEe
Q psy1437 137 DNVLYLAHRYEIPM------EGACEASLACTTCHVYVK 168 (232)
Q Consensus 137 ~tLL~aa~~~gi~l------~~~CgG~G~CgtC~v~v~ 168 (232)
+.+.+.+.+.|++. ...|| .|.||+|.|...
T Consensus 180 ~~~~~~L~~~g~~~~i~~e~f~~cg-~g~C~~C~v~~~ 216 (233)
T cd06220 180 YKVLEILDERGVRAQFSLERYMKCG-IGICGSCCIDPT 216 (233)
T ss_pred HHHHHHHHhcCCcEEEEecccccCc-CCCcCccEeccC
Confidence 46777888888842 25686 899999999974
No 109
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=67.74 E-value=4.5 Score=34.75 Aligned_cols=30 Identities=30% Similarity=0.394 Sum_probs=23.5
Q ss_pred chHHHHHHHCCCCc------cCCCCCCcccccCEEEE
Q psy1437 137 DNVLYLAHRYEIPM------EGACEASLACTTCHVYV 167 (232)
Q Consensus 137 ~tLL~aa~~~gi~l------~~~CgG~G~CgtC~v~v 167 (232)
+.+.+.+.+.|++. ...|| .|.|+.|.|..
T Consensus 193 ~~~~~~l~~~Gv~~~~s~e~~m~Cg-~G~C~~C~~~~ 228 (248)
T cd06219 193 KAVSELTRPYGIPTVVSLNPIMVDG-TGMCGACRVTV 228 (248)
T ss_pred HHHHHHHHHcCCCEEEEecccccCc-cceeeeEEEEe
Confidence 35667777889885 35787 89999999986
No 110
>KOG0553|consensus
Probab=67.57 E-value=17 Score=32.82 Aligned_cols=28 Identities=14% Similarity=0.038 Sum_probs=20.3
Q ss_pred HHHHHHHhhhhcCHHHHHHHHHHHHHHH
Q psy1437 10 AAQMAVKFDEENQDEIAAYYYQAAARFL 37 (232)
Q Consensus 10 ~~~~Av~~D~~g~~~~A~~~Y~~ai~~l 37 (232)
+=.+.=++=++++|++|+.+|.+||++-
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~ 111 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIELD 111 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 3344445556788999999999999754
No 111
>PLN02906 xanthine dehydrogenase
Probab=67.54 E-value=5.6 Score=42.83 Aligned_cols=32 Identities=19% Similarity=0.386 Sum_probs=27.0
Q ss_pred CchHHHHHHHCCCC-ccCCCCCCcccccCEEEEe
Q psy1437 136 GDNVLYLAHRYEIP-MEGACEASLACTTCHVYVK 168 (232)
Q Consensus 136 G~tLL~aa~~~gi~-l~~~CgG~G~CgtC~v~v~ 168 (232)
++|||+.+++.|+. ....|+ .|.||.|-|.|.
T Consensus 1 ~~~ll~~LR~~~l~g~k~gC~-~g~CGaCtv~~~ 33 (1319)
T PLN02906 1 HQTLLEYLRDLGLTGTKLGCG-EGGCGACTVMVS 33 (1319)
T ss_pred CCcHHHHHHhCCCCCCCCCcC-CCCCCCeEEEEC
Confidence 36899999986653 678998 699999999996
No 112
>PF10418 DHODB_Fe-S_bind: Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; InterPro: IPR019480 Lactococcus lactis is one of the few organisms with two dihydroorotate dehydrogenases (DHODs) A and B []. The B enzyme is typical of DHODs in Gram-positive bacteria that use NAD+ as the second substrate. DHODB is a heterotetramer composed of a central homodimer of PyrDB subunits resembling the DHODA structure and two PyrK subunits along with three different cofactors: FMN, FAD, and a [2Fe-2S] cluster. The [2Fe-2S] iron-sulphur cluster binds to this C-terminal domain of the PyrK subunit, which is at the interface between the flavin and NAD binding domains and contains three beta-strands. The four cysteine residues at the N-terminal part of this domain are the ones that bind, in pairs, to the iron-sulphur cluster. The conformation of the whole molecule means that the iron-sulphur cluster is localized in a well-ordered part of this domain close to the FAD binding site []. The FAD and NAD binding domains are IPR008333 from INTERPRO and IPR001433 from INTERPRO respectively. ; PDB: 1EP2_B 1EP3_B 1EP1_B.
Probab=66.76 E-value=4.1 Score=25.50 Aligned_cols=18 Identities=44% Similarity=0.591 Sum_probs=14.0
Q ss_pred CCCCCCcccccCEEEEecC
Q psy1437 152 GACEASLACTTCHVYVKHE 170 (232)
Q Consensus 152 ~~CgG~G~CgtC~v~v~~g 170 (232)
..|| .|.|+.|.+.+..+
T Consensus 4 M~CG-~G~C~~C~v~~~~~ 21 (40)
T PF10418_consen 4 MACG-VGACGGCVVPVKDG 21 (40)
T ss_dssp -SSS-SSSS-TTEEECSST
T ss_pred ccCC-CcEeCCcEeeeecC
Confidence 4696 89999999998865
No 113
>PF05168 HEPN: HEPN domain; InterPro: IPR007842 The HEPN (higher eukaryotes and prokaryotes nucleotide-binding) domain is a region of 110 residues found in the C terminus of sacsin, a chaperonin implicated in an early-onset neurodegenerative disease in human, and in many bacterial and archeabacterial proteins. There are three classes of proteins with HEPN domain: Single-domain HEPN proteins found in many bacteria. Two-domain proteins with N-terminal nucleotidyltransferase (NT) and C- terminal HEPN domains. This N-terminal NT domain belongs to a large family of NTs, which includes several classes of enzymes that are responsible for some types of bacterial resistance to aminoglycosides. These enzymes deactivate various antibiotics by transferring a nucleotidyl group to the drug. A multidomain sacsin protein in genomes of fish and mammals. The HEPN domain is located at the C terminus of the protein, directly after the DnaJ domain (see PDOC00553 from PROSITEDOC). The crystal structure of the HEPN domain from the TM0613 protein of Thermotoga maritima indicates that it is structurally similar to the C-terminal all- alpha-helical domain of kanamycin nucleotidyltransferases (KNTases). It is composed of five alpha helices, three of which form an up- and-down helical bundle, with a pair of short helices on the side. The distant structural similarity suggests that the HEPN domain might be involved in nucleotide binding [].; PDB: 1O3U_A 1WOL_A 3O10_D 2HSB_A 1UFB_A.
Probab=66.72 E-value=14 Score=27.00 Aligned_cols=39 Identities=18% Similarity=0.044 Sum_probs=35.0
Q ss_pred chHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh
Q psy1437 3 LPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA 41 (232)
Q Consensus 3 ~~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~ 41 (232)
+++.|....+.|-.+=+.|.|..|++...+|++.+++++
T Consensus 4 ~~~~A~~~l~~A~~~~~~~~~~~a~~~a~~a~e~~lkAl 42 (118)
T PF05168_consen 4 WLEKAEEDLKAAEILLEEGDYNWAVFHAYQAVEKALKAL 42 (118)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999999999987
No 114
>cd09246 BRO1_Alix_like_1 Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro
Probab=66.69 E-value=26 Score=32.07 Aligned_cols=36 Identities=17% Similarity=0.041 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh
Q psy1437 6 EVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA 41 (232)
Q Consensus 6 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~ 41 (232)
.|+..-..|..+..+++|.+|+..++.|.+.|..+.
T Consensus 246 ~A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l~~a~ 281 (353)
T cd09246 246 RAEALYRAAKDLHEKEDIGEEIARLRAASDALAEAR 281 (353)
T ss_pred HHHHHHHHHHHhHHhcchHHHHHHHHHHHHHHHHHH
Confidence 567777889999999999999999999999887776
No 115
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=66.66 E-value=12 Score=31.23 Aligned_cols=54 Identities=15% Similarity=0.145 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhhh---------------hcCHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 5 EEVINAAQMAVKFDE---------------ENQDEIAAYYYQAAARFLLETANSSSDENVAAWRQKAQQYLNRAEVLKD 68 (232)
Q Consensus 5 ~~A~~~~~~Av~~D~---------------~g~~~~A~~~Y~~ai~~l~~~~~e~~~~~~~~~~~k~~eY~~RaE~lk~ 68 (232)
.+|..+.++|++.|- .|+|++|+.+|+++++.. ..+++....| + =+++|+.++.
T Consensus 127 ~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-----~~~~~r~~~i-~----~i~~a~~~~~ 195 (198)
T PRK10370 127 PQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN-----SPRVNRTQLV-E----SINMAKLLQN 195 (198)
T ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCCccHHHHH-H----HHHHHHHHhh
Confidence 566777777766665 467777777777665421 2344444444 2 2777777753
No 116
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=65.94 E-value=4.1 Score=35.20 Aligned_cols=29 Identities=17% Similarity=0.283 Sum_probs=22.3
Q ss_pred chHHHHHHHCCCC---cc------CCCCCCcccccCEEE
Q psy1437 137 DNVLYLAHRYEIP---ME------GACEASLACTTCHVY 166 (232)
Q Consensus 137 ~tLL~aa~~~gi~---l~------~~CgG~G~CgtC~v~ 166 (232)
+.+.+++.+.|++ +. ..|| .|.||+|+|.
T Consensus 203 ~~~~~~L~~~Gv~~~~i~~~~~~~~~~~-~g~c~~c~~~ 240 (253)
T cd06221 203 RFVAKELLKLGVPEEQIWVSLERRMKCG-VGKCGHCQIG 240 (253)
T ss_pred HHHHHHHHHcCCCHHHEEEehhhccccC-CccccCcccC
Confidence 4677888899987 32 3454 8999999987
No 117
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=65.51 E-value=6.3 Score=33.88 Aligned_cols=32 Identities=34% Similarity=0.445 Sum_probs=24.9
Q ss_pred chHHHHHHHCCCCc------cCCCCCCcccccCEEEEec
Q psy1437 137 DNVLYLAHRYEIPM------EGACEASLACTTCHVYVKH 169 (232)
Q Consensus 137 ~tLL~aa~~~gi~l------~~~CgG~G~CgtC~v~v~~ 169 (232)
+.+.+.+++.|++. ...|+ .|.||.|.+...+
T Consensus 193 ~~~~~~L~~~Gv~~~~~~~~~~~~~-~g~c~~c~~~~~~ 230 (246)
T cd06218 193 KAVAELAAERGVPCQVSLEERMACG-IGACLGCVVKTKD 230 (246)
T ss_pred HHHHHHHHhcCCCEEEEecccccCc-cceecccEEEeec
Confidence 35667788889874 35676 7999999999975
No 118
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=65.41 E-value=45 Score=30.39 Aligned_cols=63 Identities=19% Similarity=0.198 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHhc-cC----C---hHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 6 EVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETAN-SS----S---DENVAAWRQKAQQYLNRAEVLKD 68 (232)
Q Consensus 6 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~-e~----~---~~~~~~~~~k~~eY~~RaE~lk~ 68 (232)
.|+..-..|.....+++|.+|+.+++.|.+.|..+.. .+ . ......+.+.+..-++++|+-=+
T Consensus 238 ~A~A~y~~A~~~~~~~~~G~aia~L~~A~~~l~~a~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~kdNd 308 (377)
T PF03097_consen 238 RALAHYHQALAAEEAKKYGEAIARLRRAEEALKEASKLAKKCSKSSSLQDDLKSLLDQIQEKLEKAEKDND 308 (377)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHCCCHSCCSTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5667778899999999999999999999999998872 11 1 22333466666666665555433
No 119
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=65.09 E-value=13 Score=22.80 Aligned_cols=25 Identities=16% Similarity=0.113 Sum_probs=20.9
Q ss_pred HHHHHHhhhhcCHHHHHHHHHHHHH
Q psy1437 11 AQMAVKFDEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 11 ~~~Av~~D~~g~~~~A~~~Y~~ai~ 35 (232)
...|-.+-..|++++|+.+|+.+++
T Consensus 5 ~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 5 LALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4567777889999999999999886
No 120
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=65.00 E-value=9.3 Score=21.27 Aligned_cols=26 Identities=15% Similarity=0.160 Sum_probs=19.6
Q ss_pred HHHHHHHhhhhcCHHHHHHHHHHHHH
Q psy1437 10 AAQMAVKFDEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 10 ~~~~Av~~D~~g~~~~A~~~Y~~ai~ 35 (232)
+.+.|.-+...|++++|+..|++-++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34567777778999999888887654
No 121
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=64.60 E-value=5.6 Score=35.02 Aligned_cols=30 Identities=27% Similarity=0.265 Sum_probs=23.1
Q ss_pred hHHHHHHHCCCCc------cCCCCCCcccccCEEEEe
Q psy1437 138 NVLYLAHRYEIPM------EGACEASLACTTCHVYVK 168 (232)
Q Consensus 138 tLL~aa~~~gi~l------~~~CgG~G~CgtC~v~v~ 168 (232)
.+.+.+.+.|+++ ...|| .|.|+.|.|...
T Consensus 195 ~v~~~l~~~gv~~~~sle~~M~CG-~G~C~~C~v~~~ 230 (281)
T PRK06222 195 FVAELTKPYGIKTIVSLNPIMVDG-TGMCGACRVTVG 230 (281)
T ss_pred HHHHHHHhcCCCEEEECcccccCc-ccccceeEEEEC
Confidence 4567778889864 36796 899999999753
No 122
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=64.54 E-value=25 Score=32.39 Aligned_cols=36 Identities=25% Similarity=0.232 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh
Q psy1437 6 EVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA 41 (232)
Q Consensus 6 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~ 41 (232)
.|+..-..|..++.+++|.+|+..|+.|.+.|..+.
T Consensus 251 ~A~A~y~~a~~~~~~~k~Ge~Ia~L~~A~~~l~~a~ 286 (361)
T cd09239 251 ASIAHLHMGKQSEEQQKMGERVAYYQLANDKLEEAI 286 (361)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777889999999999999999999999888876
No 123
>KOG2003|consensus
Probab=64.20 E-value=66 Score=31.19 Aligned_cols=65 Identities=23% Similarity=0.266 Sum_probs=39.8
Q ss_pred chHHHHHHHHHHH---------------HhhhhcCHHHHHHHHHHHH----------HHHHHHhccCChHHHH--HHHHH
Q psy1437 3 LPEEVINAAQMAV---------------KFDEENQDEIAAYYYQAAA----------RFLLETANSSSDENVA--AWRQK 55 (232)
Q Consensus 3 ~~~~A~~~~~~Av---------------~~D~~g~~~~A~~~Y~~ai----------~~l~~~~~e~~~~~~~--~~~~k 55 (232)
|-++||.+..+|. =+-..|||+.|+.+|+.-- .+|..+.- +-..++ .|..|
T Consensus 641 f~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~--dlgl~d~key~~k 718 (840)
T KOG2003|consen 641 FSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAG--DLGLKDAKEYADK 718 (840)
T ss_pred HHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhc--cccchhHHHHHHH
Confidence 5677888777664 3567899999999998643 33333321 222221 23332
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy1437 56 AQQYLNRAEVLKDKIQVM 73 (232)
Q Consensus 56 ~~eY~~RaE~lk~~~~~~ 73 (232)
++|||++|+.-...
T Consensus 719 ----lek~eki~eir~qr 732 (840)
T KOG2003|consen 719 ----LEKAEKIKEIREQR 732 (840)
T ss_pred ----HHHHHHHHHHHHHh
Confidence 67888888876433
No 124
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=63.06 E-value=41 Score=31.05 Aligned_cols=35 Identities=6% Similarity=-0.076 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHH
Q psy1437 6 EVINAAQMAVKFDEENQDEIAAYYYQAAARFLLET 40 (232)
Q Consensus 6 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~ 40 (232)
+|...-..|..++.+++|.+||.+++.|.+++..+
T Consensus 247 ~A~A~y~~a~~l~e~~k~GeaIa~L~~A~~~~k~a 281 (353)
T cd09243 247 LAYAYCYHGETLLAKDKCGEAIRSLQESEKLYNKA 281 (353)
T ss_pred HHHHHHHHHHHhHhcchHHHHHHHHHHHHHHHHHH
Confidence 57777788999999999999999999999977665
No 125
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=62.84 E-value=27 Score=31.48 Aligned_cols=37 Identities=27% Similarity=0.178 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh
Q psy1437 5 EEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA 41 (232)
Q Consensus 5 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~ 41 (232)
-.|+..-..|..++..+++.+|+.+++.|...+..+.
T Consensus 249 ~~a~a~~~~a~~~~e~~~~G~aia~L~~A~~~~~~~~ 285 (345)
T cd09034 249 FKALAYYYHGLKLDEANKIGEAIARLQAALELLKESE 285 (345)
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHH
Confidence 3577778889999999999999999999999877765
No 126
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=62.19 E-value=12 Score=29.40 Aligned_cols=17 Identities=18% Similarity=0.100 Sum_probs=9.1
Q ss_pred hhcCHHHHHHHHHHHHH
Q psy1437 19 EENQDEIAAYYYQAAAR 35 (232)
Q Consensus 19 ~~g~~~~A~~~Y~~ai~ 35 (232)
..|+|++|+.+|..|++
T Consensus 70 ~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 70 MLKEYTTAINFYGHALM 86 (144)
T ss_pred HHhhHHHHHHHHHHHHh
Confidence 34555555555555553
No 127
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=61.43 E-value=17 Score=28.83 Aligned_cols=30 Identities=20% Similarity=0.207 Sum_probs=26.1
Q ss_pred HHHHHHHhhhhcCHHHHHHHHHHHHHHHHH
Q psy1437 10 AAQMAVKFDEENQDEIAAYYYQAAARFLLE 39 (232)
Q Consensus 10 ~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~ 39 (232)
+-+||+.++.-|+.++|+..|+.|-+.+..
T Consensus 103 Vfsra~Al~~~Gr~~eA~~~fr~agEMiaE 132 (144)
T PF12968_consen 103 VFSRAVALEGLGRKEEALKEFRMAGEMIAE 132 (144)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence 458999999999999999999999987764
No 128
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=60.97 E-value=16 Score=24.57 Aligned_cols=32 Identities=19% Similarity=0.084 Sum_probs=24.6
Q ss_pred EeCCCCEEEEEecCCchHHHHHHHCCCCccCCCC
Q psy1437 122 IDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACE 155 (232)
Q Consensus 122 ~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~Cg 155 (232)
..|+|.. .+++.|.|.+|+|..-+-.+...|-
T Consensus 4 ~lpdG~~--~~~~~g~T~~d~A~~I~~~l~~~~~ 35 (60)
T PF02824_consen 4 YLPDGSI--KELPEGSTVLDVAYSIHSSLAKRAV 35 (60)
T ss_dssp EETTSCE--EEEETTBBHHHHHHHHSHHHHHCEE
T ss_pred ECCCCCe--eeCCCCCCHHHHHHHHCHHHHhhee
Confidence 3499987 6679999999999987765655443
No 129
>KOG0550|consensus
Probab=59.95 E-value=11 Score=35.57 Aligned_cols=17 Identities=18% Similarity=0.100 Sum_probs=15.5
Q ss_pred hhcCHHHHHHHHHHHHH
Q psy1437 19 EENQDEIAAYYYQAAAR 35 (232)
Q Consensus 19 ~~g~~~~A~~~Y~~ai~ 35 (232)
+.|+|..|..+|.+||.
T Consensus 261 k~G~y~~A~E~Yteal~ 277 (486)
T KOG0550|consen 261 KNGNYRKAYECYTEALN 277 (486)
T ss_pred hccchhHHHHHHHHhhc
Confidence 57999999999999996
No 130
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=59.93 E-value=38 Score=26.46 Aligned_cols=32 Identities=22% Similarity=0.172 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHhh---------------hhcCHHHHHHHHHHHHH
Q psy1437 4 PEEVINAAQMAVKFD---------------EENQDEIAAYYYQAAAR 35 (232)
Q Consensus 4 ~~~A~~~~~~Av~~D---------------~~g~~~~A~~~Y~~ai~ 35 (232)
.++|+..-++|+++| ..|++++|+..|..|++
T Consensus 74 ~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 74 YTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666666666644 46778888888877765
No 131
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=59.02 E-value=20 Score=25.13 Aligned_cols=36 Identities=22% Similarity=0.269 Sum_probs=27.5
Q ss_pred eeEEEEEeCCCCEEEEEecCCchHHHH----HHHCCCCcc
Q psy1437 116 IVNITFIDKDGKRREIKGKVGDNVLYL----AHRYEIPME 151 (232)
Q Consensus 116 mv~Vt~~~~~G~~~~v~~~~G~tLL~a----a~~~gi~l~ 151 (232)
|+.|+|.+..|+...+++.+..|+.+. +.+.|++..
T Consensus 1 ~~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~ 40 (73)
T cd01791 1 MIEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPE 40 (73)
T ss_pred CEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChH
Confidence 688999888899888899999999764 344466543
No 132
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=57.72 E-value=15 Score=26.89 Aligned_cols=33 Identities=12% Similarity=0.095 Sum_probs=25.4
Q ss_pred eEEEEEeCCCCE-EEEEecCCchHHHHHHHCCCC
Q psy1437 117 VNITFIDKDGKR-REIKGKVGDNVLYLAHRYEIP 149 (232)
Q Consensus 117 v~Vt~~~~~G~~-~~v~~~~G~tLL~aa~~~gi~ 149 (232)
|.|.+-.|+... ..+++++|.|+.+|+...|+.
T Consensus 3 VeV~yA~p~~q~~~~l~vp~GtTv~~Ai~~Sgi~ 36 (84)
T PF03658_consen 3 VEVAYALPERQVILTLEVPEGTTVAQAIEASGIL 36 (84)
T ss_dssp EEEEEEETTCEEEEEEEEETT-BHHHHHHHHTHH
T ss_pred EEEEEECCCeEEEEEEECCCcCcHHHHHHHcCch
Confidence 566666666543 578999999999999999985
No 133
>PF02255 PTS_IIA: PTS system, Lactose/Cellobiose specific IIA subunit; InterPro: IPR003188 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilised by a centrally located metal ion []. Separation into subunits is thought to occur after phosphorylation.; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3L8R_D 2E2A_B 1E2A_C 3K1S_C 2LRK_C 2LRL_A 2WY2_A 1WCR_A 2WWV_C.
Probab=57.64 E-value=32 Score=25.62 Aligned_cols=35 Identities=26% Similarity=0.151 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHH
Q psy1437 6 EVINAAQMAVKFDEENQDEIAAYYYQAAARFLLET 40 (232)
Q Consensus 6 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~ 40 (232)
+|.+++-+|++.=++|+|++|-.+.++|=+.|..+
T Consensus 13 ~Ars~~~eAl~~a~~~~fe~A~~~l~~a~~~l~~A 47 (96)
T PF02255_consen 13 DARSLAMEALKAAREGDFEEAEELLKEADEELLKA 47 (96)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 56777778888888888888888888877777665
No 134
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=57.03 E-value=27 Score=22.77 Aligned_cols=21 Identities=14% Similarity=0.099 Sum_probs=11.4
Q ss_pred HHHhhhhcCHHHHHHHHHHHH
Q psy1437 14 AVKFDEENQDEIAAYYYQAAA 34 (232)
Q Consensus 14 Av~~D~~g~~~~A~~~Y~~ai 34 (232)
|..+=+.|+|++|+.+|++++
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l 24 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQAL 24 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 444445556666666655544
No 135
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=56.94 E-value=9.3 Score=25.20 Aligned_cols=17 Identities=12% Similarity=0.087 Sum_probs=13.3
Q ss_pred hhcCHHHHHHHHHHHHH
Q psy1437 19 EENQDEIAAYYYQAAAR 35 (232)
Q Consensus 19 ~~g~~~~A~~~Y~~ai~ 35 (232)
..|+|++|+.+|+++++
T Consensus 3 ~~~~~~~A~~~~~~~l~ 19 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQ 19 (68)
T ss_dssp HTTHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHH
Confidence 46888888888888764
No 136
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=56.74 E-value=6.6 Score=34.17 Aligned_cols=28 Identities=18% Similarity=0.243 Sum_probs=20.6
Q ss_pred hHHHHHHHCCCCcc---------CCCCCCcccccCEEE
Q psy1437 138 NVLYLAHRYEIPME---------GACEASLACTTCHVY 166 (232)
Q Consensus 138 tLL~aa~~~gi~l~---------~~CgG~G~CgtC~v~ 166 (232)
.+.+.+.+.|++-. -.|| .|.||.|+|.
T Consensus 204 ~~~~~L~~~Gv~~~~i~~~~~~~m~cg-~g~c~~c~~~ 240 (261)
T TIGR02911 204 FTVQELLKKGIKEENIWVSYERKMCCG-VGKCGHCKID 240 (261)
T ss_pred HHHHHHHHcCCCHHHEEEEeccceecc-CcCCCCcccC
Confidence 45667788898621 3565 8999999876
No 137
>PF02071 NSF: Aromatic-di-Alanine (AdAR) repeat ; InterPro: IPR000744 Regulated exocytosis of neurotransmitters and hormones, as well as intracellular traffic, requires fusion of two lipid bilayers. SNARE proteins are thought to form a protein bridge, the SNARE complex, between an incoming vesicle and the acceptor compartment. SNARE proteins contribute to the specificity of membrane fusion, implying that the mechanisms by which SNAREs are targeted to subcellular compartments are important for specific docking and fusion of vesicles. This mechanism involves a family of conserved proteins, members of which appear to function at all sites of constitutive and regulated secretion in eukaryotes []. Among them are 2 types of cytosolic protein, NSF (N-ethyl-maleimide-sensitive protein) and the SNAPs (alpha-, beta- and gamma-soluble NSF attachment proteins). The yeast vesicular fusion protein, sec17, a cytoplasmic peripheral membrane protein involved in vesicular transport between the endoplasmic reticulum and the golgi apparatus, shows a high degree of sequence similarity to the alpha-SNAP family. SNAP-25 and its non-neuronal homologue Syndet/SNAP-23 are synthesized as soluble proteins in the cytosol. Both SNAP-25 and Syndet/SNAP-23 are palmitoylated at cysteine residues clustered in a loop between two N- and C-terminal coils and palmitoylation is essential for membrane binding and plasma membrane targeting. The C-terminal and the N-terminal helices of SNAP-25, are each targeted to the plasma membrane by two distinct cysteine-rich domains and appear to regulate the availability of SNAP to form complexes with SNARE [].; GO: 0006886 intracellular protein transport
Probab=56.68 E-value=4.6 Score=18.76 Aligned_cols=11 Identities=36% Similarity=0.380 Sum_probs=6.9
Q ss_pred HHHHHHHHHHH
Q psy1437 26 AAYYYQAAARF 36 (232)
Q Consensus 26 A~~~Y~~ai~~ 36 (232)
|+.+|++|.+.
T Consensus 1 A~~~y~~Aa~~ 11 (12)
T PF02071_consen 1 AIKCYEKAAEC 11 (12)
T ss_pred CcHHHHHHHhh
Confidence 45677777654
No 138
>KOG0547|consensus
Probab=55.62 E-value=15 Score=35.51 Aligned_cols=32 Identities=16% Similarity=0.225 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHhhhh---------------cCHHHHHHHHHHHHH
Q psy1437 4 PEEVINAAQMAVKFDEE---------------NQDEIAAYYYQAAAR 35 (232)
Q Consensus 4 ~~~A~~~~~~Av~~D~~---------------g~~~~A~~~Y~~ai~ 35 (232)
+..|++++++|++.|.. |+.++||.++.++++
T Consensus 519 ~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 519 INQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 57899999999999965 555677777777664
No 139
>KOG1156|consensus
Probab=55.51 E-value=53 Score=32.76 Aligned_cols=35 Identities=20% Similarity=0.338 Sum_probs=27.4
Q ss_pred CCchHHHHHHHHHHHHhhh---------------hcCHHHHHHHHHHHHH
Q psy1437 1 MGLPEEVINAAQMAVKFDE---------------ENQDEIAAYYYQAAAR 35 (232)
Q Consensus 1 ~~~~~~A~~~~~~Av~~D~---------------~g~~~~A~~~Y~~ai~ 35 (232)
|+-.+.|-++++.|+.-|- .++|.|||.||+.|+.
T Consensus 54 lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~ 103 (700)
T KOG1156|consen 54 LGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALK 103 (700)
T ss_pred ccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 4556788888888888774 5678999999999873
No 140
>PRK10454 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA; Provisional
Probab=55.32 E-value=33 Score=26.52 Aligned_cols=35 Identities=17% Similarity=0.043 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHH
Q psy1437 6 EVINAAQMAVKFDEENQDEIAAYYYQAAARFLLET 40 (232)
Q Consensus 6 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~ 40 (232)
+|.+++-.|++.=++|+|++|-.+-.+|=+.|..+
T Consensus 30 ~ArS~~~eAl~~Ak~gdfe~A~~~l~eA~e~l~~A 64 (115)
T PRK10454 30 QARSLAYAALKQAKQGDFAAAKAMMDQSRMALNEA 64 (115)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 35555666666666666666666666655555543
No 141
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=55.26 E-value=35 Score=25.51 Aligned_cols=35 Identities=23% Similarity=0.071 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHH
Q psy1437 6 EVINAAQMAVKFDEENQDEIAAYYYQAAARFLLET 40 (232)
Q Consensus 6 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~ 40 (232)
+|.+.+-.|++.=++|+|++|-.+-++|=+.|..+
T Consensus 14 ~Ars~~~eAl~~a~~g~fe~A~~~l~ea~~~l~~A 48 (97)
T cd00215 14 NARSKALEALKAAKEGDFAEAEELLEEANDSLNEA 48 (97)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 35555566666666666666666655555555443
No 142
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=54.95 E-value=40 Score=22.36 Aligned_cols=16 Identities=25% Similarity=0.385 Sum_probs=9.4
Q ss_pred hHHHHHHHHHHHHhhh
Q psy1437 4 PEEVINAAQMAVKFDE 19 (232)
Q Consensus 4 ~~~A~~~~~~Av~~D~ 19 (232)
.++|++.+.+++++|.
T Consensus 11 ~~~A~~~~~~~l~~~p 26 (73)
T PF13371_consen 11 YEEALEVLERALELDP 26 (73)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 4556666666666643
No 143
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=54.71 E-value=6.9 Score=34.08 Aligned_cols=29 Identities=14% Similarity=0.224 Sum_probs=21.6
Q ss_pred chHHHHHHHCCCCc---------cCCCCCCcccccCEEE
Q psy1437 137 DNVLYLAHRYEIPM---------EGACEASLACTTCHVY 166 (232)
Q Consensus 137 ~tLL~aa~~~gi~l---------~~~CgG~G~CgtC~v~ 166 (232)
+.+.+.+++.|++- ...|| .|.||+|+|.
T Consensus 205 ~~~~~~L~~~Gv~~~~i~~~~~~~m~cg-~g~c~~c~~~ 242 (263)
T PRK08221 205 KFTVLEFLKRGIKEENIWVSYERKMCCG-VGKCGHCKID 242 (263)
T ss_pred HHHHHHHHHcCCCHHHEEEEecceeEcc-CcccCCcccC
Confidence 35667778889863 24676 8999999976
No 144
>PRK09591 celC cellobiose phosphotransferase system IIA component; Reviewed
Probab=53.97 E-value=37 Score=25.72 Aligned_cols=35 Identities=17% Similarity=0.096 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHH
Q psy1437 6 EVINAAQMAVKFDEENQDEIAAYYYQAAARFLLET 40 (232)
Q Consensus 6 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~ 40 (232)
+|.+.+-.|++.=++|+|++|-.+..+|=+.|..+
T Consensus 19 ~Ars~~~eAl~~ak~gdf~~A~~~l~eA~~~l~~A 53 (104)
T PRK09591 19 NARTEVHEAFAAMREGNFDLAEQKLNQSNEELLEA 53 (104)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666666555544
No 145
>KOG3049|consensus
Probab=53.66 E-value=20 Score=30.97 Aligned_cols=33 Identities=21% Similarity=0.467 Sum_probs=24.7
Q ss_pred CCchHHHHHHH--CCCC----ccCCCCCCcccccCEEEEe
Q psy1437 135 VGDNVLYLAHR--YEIP----MEGACEASLACTTCHVYVK 168 (232)
Q Consensus 135 ~G~tLL~aa~~--~gi~----l~~~CgG~G~CgtC~v~v~ 168 (232)
-|--+||++.. +.++ ..-+|+ .|.||+|...|-
T Consensus 75 CGpMvLDALiKIKnE~DptLTFRRSCR-EGICGSCAMNI~ 113 (288)
T KOG3049|consen 75 CGPMVLDALIKIKNEMDPTLTFRRSCR-EGICGSCAMNIN 113 (288)
T ss_pred cchHHHHHHHHhhcccCCceehhhhhh-ccccccceeccC
Confidence 36789999985 3343 346898 699999998874
No 146
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=53.04 E-value=49 Score=24.67 Aligned_cols=23 Identities=26% Similarity=0.078 Sum_probs=11.9
Q ss_pred HHHHHhhhhcCHHHHHHHHHHHH
Q psy1437 12 QMAVKFDEENQDEIAAYYYQAAA 34 (232)
Q Consensus 12 ~~Av~~D~~g~~~~A~~~Y~~ai 34 (232)
..|.-+-..|+|.+|+.+|.+++
T Consensus 56 ~la~~~~~~~~~~~A~~~~~~~~ 78 (135)
T TIGR02552 56 GLAACCQMLKEYEEAIDAYALAA 78 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555554
No 147
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=52.74 E-value=26 Score=28.05 Aligned_cols=30 Identities=13% Similarity=0.082 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHH
Q psy1437 6 EVINAAQMAVKFDEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 6 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 35 (232)
.|..+...|..+-..|+|++|+.+|++|++
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 63 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALK 63 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445566677777777777777777777764
No 148
>PF08910 Aida_N: Aida N-terminus; InterPro: IPR015006 This entry represents the axin interactor, dorsalization-associated protein family AIDA [].; PDB: 1UG7_A.
Probab=52.37 E-value=1e+02 Score=23.51 Aligned_cols=60 Identities=23% Similarity=0.173 Sum_probs=38.6
Q ss_pred HHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh-c-c---CChHHHHHHHHHHHHHH-HHHHHHHHH
Q psy1437 9 NAAQMAVKFDEENQDEIAAYYYQAAARFLLETA-N-S---SSDENVAAWRQKAQQYL-NRAEVLKDK 69 (232)
Q Consensus 9 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~-~-e---~~~~~~~~~~~k~~eY~-~RaE~lk~~ 69 (232)
.-.++|+++|.=|+.-||+.=|+.=..-+.... . . -.+..++. -.|+.-.+ =|++.|.+.
T Consensus 7 ~s~~ka~dfDsWGQlvEA~deY~~La~~l~k~~~~~~~~~fte~qkk~-i~Kia~cL~lRs~~Lq~~ 72 (106)
T PF08910_consen 7 ASFKKATDFDSWGQLVEAIDEYQRLARQLKKEVQSHQDSDFTEDQKKT-IGKIATCLELRSKALQSL 72 (106)
T ss_dssp HHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHT-SS--SS-HHHHHH-HHHHHHHHHHHHHHHH--
T ss_pred HHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHH-HHHHHHHHHHHHHHHHhh
Confidence 346899999999999999999998766676665 3 1 13444443 34444444 488877763
No 149
>cd01816 Raf_RBD Ubiquitin domain of Raf serine/threonine kinases. The Raf serine/threonine kinases are composed of three conserved regions, CR1, CR2 and CR3. CR1 has two Ras binding domains (RBD and CRD), CR2 is a serine/threonine rich domain and CR3 is the catalytic kinase domain. The RBD of Raf is structurally similar to ubiquitin with little of no sequence similarity.The Raf signalling pathway plays an important role in the proliferation and survival of tumor cells.
Probab=52.36 E-value=23 Score=25.26 Aligned_cols=24 Identities=8% Similarity=0.007 Sum_probs=19.6
Q ss_pred eCCCCEEEEEecCCchHHHHHHHC
Q psy1437 123 DKDGKRREIKGKVGDNVLYLAHRY 146 (232)
Q Consensus 123 ~~~G~~~~v~~~~G~tLL~aa~~~ 146 (232)
.|+.++..|++.+|.||-+++.++
T Consensus 6 LPnqQrT~V~vrpG~tl~daL~Ka 29 (74)
T cd01816 6 LPNKQRTVVNVRPGMTLRDALAKA 29 (74)
T ss_pred CCCCCeEEEEecCCcCHHHHHHHH
Confidence 488777789999999998887653
No 150
>PRK05802 hypothetical protein; Provisional
Probab=52.13 E-value=11 Score=34.09 Aligned_cols=30 Identities=17% Similarity=0.402 Sum_probs=22.0
Q ss_pred hHHHHHHH--CCCCc------cCCCCCCcccccCEEEEe
Q psy1437 138 NVLYLAHR--YEIPM------EGACEASLACTTCHVYVK 168 (232)
Q Consensus 138 tLL~aa~~--~gi~l------~~~CgG~G~CgtC~v~v~ 168 (232)
.+.+.+.+ .+|++ ...|| .|.||.|.|...
T Consensus 268 ~v~~~l~~~~~~i~~~~Sle~~M~CG-~G~Cg~C~v~~~ 305 (320)
T PRK05802 268 KIIEYLDKLNEKIKLSCSNNAKMCCG-EGICGACTVRYG 305 (320)
T ss_pred HHHHHHhhhcCCceEEEeCCCeeeCc-CccCCeeEEEEC
Confidence 34555655 67765 46787 899999999964
No 151
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=50.93 E-value=12 Score=37.58 Aligned_cols=29 Identities=31% Similarity=0.449 Sum_probs=23.3
Q ss_pred hHHHHHHHCCCCc------cCCCCCCcccccCEEEE
Q psy1437 138 NVLYLAHRYEIPM------EGACEASLACTTCHVYV 167 (232)
Q Consensus 138 tLL~aa~~~gi~l------~~~CgG~G~CgtC~v~v 167 (232)
.+.+.+.+.|++. ...|| .|.||.|.|..
T Consensus 195 ~v~~~l~~~gv~~~~Sle~~M~CG-~G~C~~C~v~~ 229 (752)
T PRK12778 195 FVCLLTKKYGIPTIVSLNTIMVDG-TGMCGACRVTV 229 (752)
T ss_pred HHHHHHHHcCCCEEEeCcccccCc-ccccCcceeEe
Confidence 4567777889986 57896 89999999964
No 152
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=50.89 E-value=28 Score=24.83 Aligned_cols=38 Identities=13% Similarity=0.239 Sum_probs=27.0
Q ss_pred eCCCCEEEEEecCCchHHHHHH----HCCCCccCCCCCCcccccCEEEEecC
Q psy1437 123 DKDGKRREIKGKVGDNVLYLAH----RYEIPMEGACEASLACTTCHVYVKHE 170 (232)
Q Consensus 123 ~~~G~~~~v~~~~G~tLL~aa~----~~gi~l~~~CgG~G~CgtC~v~v~~g 170 (232)
.|||.+..|.+.+|.||-|++. ..|+.. ..|.|....+
T Consensus 6 LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~----------~~~~vf~~g~ 47 (73)
T cd01817 6 LPDGSTTVVPTRPGESIRDLLSGLCEKRGINY----------AAVDLFLVGG 47 (73)
T ss_pred CCCCCeEEEEecCCCCHHHHHHHHHHHcCCCh----------hHEEEEEecC
Confidence 4999988899999999887654 455542 3456666643
No 153
>COG1683 Uncharacterized conserved protein [Function unknown]
Probab=50.24 E-value=6.4 Score=32.08 Aligned_cols=34 Identities=26% Similarity=0.174 Sum_probs=28.9
Q ss_pred chHHHHHHHCCCCccCCCCCCcccccCEEEEecC
Q psy1437 137 DNVLYLAHRYEIPMEGACEASLACTTCHVYVKHE 170 (232)
Q Consensus 137 ~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g 170 (232)
+.-|+.+.+++++.--.|.++.+||.+.|++-+.
T Consensus 89 ~~~L~~a~~~~~~~aILk~kSPSCG~~~vydg~f 122 (156)
T COG1683 89 ERTLALAKEAGIDGAILKEKSPSCGSGFVYDGSF 122 (156)
T ss_pred HHHHHHhhhcCCcEEEEecCCCCCCceeeEeecc
Confidence 4567788888999888999999999999998754
No 154
>TIGR00823 EIIA-LAC phosphotransferase system enzyme II, lactose-specific, factor III. operon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family.
Probab=49.57 E-value=48 Score=24.83 Aligned_cols=33 Identities=21% Similarity=0.030 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHH
Q psy1437 7 VINAAQMAVKFDEENQDEIAAYYYQAAARFLLE 39 (232)
Q Consensus 7 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~ 39 (232)
|.+.+-.|++.=++|+|++|-.+..+|=+.|..
T Consensus 17 Ars~~~eAl~~a~~gdfe~A~~~l~eA~~~l~~ 49 (99)
T TIGR00823 17 ARSKALEALKAAKAGDFAKARALVEQAGMCLNE 49 (99)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555444443
No 155
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=49.08 E-value=28 Score=33.22 Aligned_cols=24 Identities=21% Similarity=0.034 Sum_probs=15.6
Q ss_pred HHHHhhhhcCHHHHHHHHHHHHHH
Q psy1437 13 MAVKFDEENQDEIAAYYYQAAARF 36 (232)
Q Consensus 13 ~Av~~D~~g~~~~A~~~Y~~ai~~ 36 (232)
+|.-+-..|++++|+.+|.+|++.
T Consensus 118 LAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 118 KACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 333334447778888888888774
No 156
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=48.36 E-value=38 Score=32.88 Aligned_cols=60 Identities=18% Similarity=0.165 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHhh---------------hhcCHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 4 PEEVINAAQMAVKFD---------------EENQDEIAAYYYQAAARFLLETANSSSDENVAAWRQKAQQYLNRAEVLKD 68 (232)
Q Consensus 4 ~~~A~~~~~~Av~~D---------------~~g~~~~A~~~Y~~ai~~l~~~~~e~~~~~~~~~~~k~~eY~~RaE~lk~ 68 (232)
.++|++++.+||+.+ ..|++++|...+.+|-. | |..- ..|..|+..|+=||-.+.+
T Consensus 210 ~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~-L-------D~~D-RyiNsK~aKy~LRa~~~e~ 280 (517)
T PF12569_consen 210 YEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARE-L-------DLAD-RYINSKCAKYLLRAGRIEE 280 (517)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-C-------Chhh-HHHHHHHHHHHHHCCCHHH
Confidence 445666666555544 34555555555544432 1 1111 2489999999999988887
Q ss_pred HHHH
Q psy1437 69 KIQV 72 (232)
Q Consensus 69 ~~~~ 72 (232)
..+.
T Consensus 281 A~~~ 284 (517)
T PF12569_consen 281 AEKT 284 (517)
T ss_pred HHHH
Confidence 6644
No 157
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=48.32 E-value=23 Score=32.38 Aligned_cols=32 Identities=13% Similarity=-0.030 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHhh---------------hhcCHHHHHHHHHHHHH
Q psy1437 4 PEEVINAAQMAVKFD---------------EENQDEIAAYYYQAAAR 35 (232)
Q Consensus 4 ~~~A~~~~~~Av~~D---------------~~g~~~~A~~~Y~~ai~ 35 (232)
...|+++.++|+++| ..|+|++|+.+|..|++
T Consensus 18 ~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~ 64 (356)
T PLN03088 18 FALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIE 64 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445666666665554 34566666666666554
No 158
>COG2250 Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN [Function unknown]
Probab=48.16 E-value=48 Score=26.00 Aligned_cols=39 Identities=15% Similarity=0.108 Sum_probs=35.7
Q ss_pred chHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh
Q psy1437 3 LPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA 41 (232)
Q Consensus 3 ~~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~ 41 (232)
+++.|......|...=+.|.|..|.+.=++|+++.++++
T Consensus 9 ~~~rA~~~l~~A~~~le~G~y~~a~f~aqQAvel~lKal 47 (132)
T COG2250 9 WLRRAERDLKLAKRDLELGDYDLACFHAQQAVELALKAL 47 (132)
T ss_pred HHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHH
Confidence 467899999999998899999999999999999999987
No 159
>PF03990 DUF348: Domain of unknown function (DUF348) ; InterPro: IPR007137 This domain normally occurs as tandem repeats; however it is found as a single copy in the Saccharomyces cerevisiae (Baker's yeast) DNA-binding nuclear protein YCR593 (P25357 from SWISSPROT).
Probab=47.64 E-value=48 Score=20.62 Aligned_cols=30 Identities=20% Similarity=0.261 Sum_probs=22.8
Q ss_pred EEEEeCCCCEEEEEecCCchHHHHHHHCCCCc
Q psy1437 119 ITFIDKDGKRREIKGKVGDNVLYLAHRYEIPM 150 (232)
Q Consensus 119 Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l 150 (232)
|++. .+|+.+.+... ..|+-+++.++||.+
T Consensus 2 Vtv~-~dG~~~~v~T~-a~tV~~~L~~~gI~l 31 (43)
T PF03990_consen 2 VTVT-VDGKEKTVYTT-ASTVGDALKELGITL 31 (43)
T ss_pred EEEE-ECCEEEEEEeC-CCCHHHHHHhCCCCC
Confidence 4543 57888777644 569999999999987
No 160
>PF14346 DUF4398: Domain of unknown function (DUF4398)
Probab=47.54 E-value=1.1e+02 Score=22.45 Aligned_cols=34 Identities=18% Similarity=-0.048 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHH
Q psy1437 4 PEEVINAAQMAVKFDEENQDEIAAYYYQAAARFL 37 (232)
Q Consensus 4 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l 37 (232)
+..|-+.+.+|-..-..|+|.+|..+=..|...-
T Consensus 42 l~~A~~~L~~A~~a~~~~~y~~A~~~A~~A~~~A 75 (103)
T PF14346_consen 42 LKEAREKLQRAKAALDDGDYERARRLAEQAQADA 75 (103)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666655555443
No 161
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=47.34 E-value=1.1e+02 Score=25.63 Aligned_cols=20 Identities=20% Similarity=0.325 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy1437 48 NVAAWRQKAQQYLNRAEVLK 67 (232)
Q Consensus 48 ~~~~~~~k~~eY~~RaE~lk 67 (232)
..+.+-+|+.+|..+|..++
T Consensus 91 ~A~~~F~kA~~~FqkAv~~~ 110 (186)
T PF06552_consen 91 EAEEYFEKATEYFQKAVDED 110 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 33445566666666665543
No 162
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=47.08 E-value=22 Score=24.63 Aligned_cols=24 Identities=13% Similarity=0.027 Sum_probs=15.1
Q ss_pred EeCCCCEEEEEecCCchHHHHHHH
Q psy1437 122 IDKDGKRREIKGKVGDNVLYLAHR 145 (232)
Q Consensus 122 ~~~~G~~~~v~~~~G~tLL~aa~~ 145 (232)
+.+++.+..|.+.++.+|.+++.+
T Consensus 2 i~~~~rr~~vkvtp~~~l~~VL~e 25 (65)
T PF11470_consen 2 ICYNFRRFKVKVTPNTTLNQVLEE 25 (65)
T ss_dssp E-TTS-EEEE---TTSBHHHHHHH
T ss_pred CccCCcEEEEEECCCCCHHHHHHH
Confidence 458898889999999988776554
No 163
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=47.03 E-value=24 Score=33.69 Aligned_cols=30 Identities=10% Similarity=0.108 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHH
Q psy1437 6 EVINAAQMAVKFDEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 6 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 35 (232)
.+....+.++.+-..|+|++|+.+|.+||+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe 103 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE 103 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 355667788888888888888888888876
No 164
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=47.00 E-value=45 Score=22.95 Aligned_cols=35 Identities=17% Similarity=0.244 Sum_probs=25.3
Q ss_pred ceeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCc
Q psy1437 115 EIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPM 150 (232)
Q Consensus 115 ~mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l 150 (232)
.|++|++. ..+...+++++.|.|+.+.+..-+++.
T Consensus 3 ~mm~v~vn-g~~~~~~~~~~~~~tv~~ll~~l~~~~ 37 (70)
T PRK08364 3 LMIRVKVI-GRGIEKEIEWRKGMKVADILRAVGFNT 37 (70)
T ss_pred eEEEEEEe-ccccceEEEcCCCCcHHHHHHHcCCCC
Confidence 46777764 222245688899999999999998853
No 165
>smart00748 HEPN Higher Eukarytoes and Prokaryotes Nucleotide-binding domain.
Probab=46.51 E-value=45 Score=24.76 Aligned_cols=37 Identities=22% Similarity=0.120 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh
Q psy1437 5 EEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA 41 (232)
Q Consensus 5 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~ 41 (232)
++|....+.|-..=+.|.|..|.+.-++|++..++++
T Consensus 2 ~~A~~~l~~A~~~~~~g~y~~a~f~aqqavEk~lKA~ 38 (113)
T smart00748 2 RRAKRFLEAAKLDLEKGFYDLAAFLSQQAAELALKAL 38 (113)
T ss_pred chHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHH
Confidence 5677777777777789999999999999999999987
No 166
>KOG0543|consensus
Probab=45.63 E-value=1.2e+02 Score=28.57 Aligned_cols=67 Identities=15% Similarity=0.175 Sum_probs=45.0
Q ss_pred CchHHHHHHHHHHHHhhhh--------cCHHHHHHHHHHHHHHHHHHh-ccC-ChHH---HHHHHHHHHHHHHHHHHHHH
Q psy1437 2 GLPEEVINAAQMAVKFDEE--------NQDEIAAYYYQAAARFLLETA-NSS-SDEN---VAAWRQKAQQYLNRAEVLKD 68 (232)
Q Consensus 2 ~~~~~A~~~~~~Av~~D~~--------g~~~~A~~~Y~~ai~~l~~~~-~e~-~~~~---~~~~~~k~~eY~~RaE~lk~ 68 (232)
+-...|+....++.++|.. |+.-.++.=|..|+..|.+++ .++ |... ...+++|+.+|.+|..++-.
T Consensus 271 ~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~ 350 (397)
T KOG0543|consen 271 KEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYA 350 (397)
T ss_pred hhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788999999998865 344455566888888888887 443 2211 22478888888888554433
No 167
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=45.61 E-value=1.1e+02 Score=22.58 Aligned_cols=44 Identities=25% Similarity=0.145 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 25 IAAYYYQAAARFLLETANSSSDENVAAWRQKAQQYLNRAEVLKDKIQVMF 74 (232)
Q Consensus 25 ~A~~~Y~~ai~~l~~~~~e~~~~~~~~~~~k~~eY~~RaE~lk~~~~~~~ 74 (232)
.++.-|.+|++-. .++..|..+.+.+.++..-+++|+.++...-
T Consensus 15 d~~~~Y~~a~~~~------~~~~lk~~f~~~~~~~~~~~~~L~~~i~~~G 58 (111)
T PF09537_consen 15 DGIEGYEKAAEKA------EDPELKSLFQEFAQERQQHAEELQAEIQELG 58 (111)
T ss_dssp HHHHHHHHHHHH--------SHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4555666666532 3788899999999999999999999996654
No 168
>KOG0430|consensus
Probab=45.52 E-value=36 Score=36.17 Aligned_cols=45 Identities=18% Similarity=0.271 Sum_probs=34.2
Q ss_pred CCCCEEEE-EecCCchHHHHHHHC-CCC-ccCCCCCCcccccCEEEEec
Q psy1437 124 KDGKRREI-KGKVGDNVLYLAHRY-EIP-MEGACEASLACTTCHVYVKH 169 (232)
Q Consensus 124 ~~G~~~~v-~~~~G~tLL~aa~~~-gi~-l~~~CgG~G~CgtC~v~v~~ 169 (232)
.+|+.+++ .+++..||+.-++++ ++- ....|+ .|.||.|.|.|..
T Consensus 7 VNG~~~~~~~vdP~~TL~~fLR~k~~ltgtKlgC~-EGGCGaCtv~ls~ 54 (1257)
T KOG0430|consen 7 INGKRVEVELLPPDLTLNTFLREKLGLTGTKLGCG-EGGCGACTVVLSK 54 (1257)
T ss_pred ECCEEeeEecCCcchhHHHHHHHhcCCcceeeccC-CCCccceEEEEec
Confidence 57877544 367788999888764 443 678998 6999999999975
No 169
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=44.97 E-value=40 Score=26.93 Aligned_cols=28 Identities=18% Similarity=0.335 Sum_probs=22.1
Q ss_pred HHHHHHHHhhhhcCHHHHHHHHHHHHHH
Q psy1437 9 NAAQMAVKFDEENQDEIAAYYYQAAARF 36 (232)
Q Consensus 9 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 36 (232)
.+...|+-+...|+|++|+.+|.+|++.
T Consensus 74 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 101 (172)
T PRK02603 74 ILYNMGIIYASNGEHDKALEYYHQALEL 101 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4556677778889999999999988874
No 170
>KOG4626|consensus
Probab=44.02 E-value=22 Score=35.54 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=15.5
Q ss_pred HHHHHhhhhcCHHHHHHHHHHHHH
Q psy1437 12 QMAVKFDEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 12 ~~Av~~D~~g~~~~A~~~Y~~ai~ 35 (232)
+.|+-+-+.||+++|+.||++||.
T Consensus 393 NLa~i~kqqgnl~~Ai~~Ykealr 416 (966)
T KOG4626|consen 393 NLASIYKQQGNLDDAIMCYKEALR 416 (966)
T ss_pred hHHHHHHhcccHHHHHHHHHHHHh
Confidence 455556666777777777766653
No 171
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=43.54 E-value=35 Score=24.54 Aligned_cols=32 Identities=13% Similarity=-0.065 Sum_probs=23.7
Q ss_pred eCCCCEEEEEecCCchHHHHHH----HCCCCccCCC
Q psy1437 123 DKDGKRREIKGKVGDNVLYLAH----RYEIPMEGAC 154 (232)
Q Consensus 123 ~~~G~~~~v~~~~G~tLL~aa~----~~gi~l~~~C 154 (232)
.|+|....+.+.+|.|++|.+. ++|++-..=|
T Consensus 6 lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~ 41 (77)
T cd01818 6 LPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHY 41 (77)
T ss_pred CCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHhe
Confidence 4899988999999999998754 4555543333
No 172
>PRK06437 hypothetical protein; Provisional
Probab=43.52 E-value=47 Score=22.77 Aligned_cols=25 Identities=8% Similarity=-0.056 Sum_probs=20.9
Q ss_pred CCCEEEEEecCCchHHHHHHHCCCC
Q psy1437 125 DGKRREIKGKVGDNVLYLAHRYEIP 149 (232)
Q Consensus 125 ~G~~~~v~~~~G~tLL~aa~~~gi~ 149 (232)
+++..+++++.+.|+.+.+...|++
T Consensus 9 g~~~~~~~i~~~~tv~dLL~~Lgi~ 33 (67)
T PRK06437 9 GHINKTIEIDHELTVNDIIKDLGLD 33 (67)
T ss_pred CCcceEEEcCCCCcHHHHHHHcCCC
Confidence 4455678889999999999999885
No 173
>PRK01777 hypothetical protein; Validated
Probab=41.80 E-value=72 Score=23.70 Aligned_cols=36 Identities=6% Similarity=-0.001 Sum_probs=25.3
Q ss_pred eeEEEEE--eCCCC-EEEEEecCCchHHHHHHHCCCCcc
Q psy1437 116 IVNITFI--DKDGK-RREIKGKVGDNVLYLAHRYEIPME 151 (232)
Q Consensus 116 mv~Vt~~--~~~G~-~~~v~~~~G~tLL~aa~~~gi~l~ 151 (232)
|++|++. .++.. ...+++++|.|+-+++...||...
T Consensus 3 ~i~v~V~ya~~~~~~~~~l~vp~GtTv~dal~~sgi~~~ 41 (95)
T PRK01777 3 KIRVEVVYALPERQYLQRLTLQEGATVEEAIRASGLLEL 41 (95)
T ss_pred eeEEEEEEECCCceEEEEEEcCCCCcHHHHHHHcCCCcc
Confidence 4444444 33332 246889999999999999999654
No 174
>cd09245 BRO1_UmRIM23-like Protein-interacting, Bro1-like domain of Ustilago maydis Rim23 (PalC), and related domains. This family contains the Bro1-like domain of Ustilago maydis Rim23 (also known as PalC), and related proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Through its Bro1-like domain, Rim23 allows the interaction between the endosomal and plasma membrane complexes. Bro1-like domains are boomerang-shape, and part of the domain is a tetratricop
Probab=41.35 E-value=1.4e+02 Score=28.19 Aligned_cols=35 Identities=14% Similarity=0.137 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHH
Q psy1437 6 EVINAAQMAVKFDEENQDEIAAYYYQAAARFLLET 40 (232)
Q Consensus 6 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~ 40 (232)
+|...-..|+.++.+|+|.+||-+.+.|...|..+
T Consensus 295 ~A~A~~~~g~d~~e~~k~GeaIa~L~~A~~~L~~~ 329 (413)
T cd09245 295 RALACKFLGIDAGENGKVGEAIGWLRAAKKELEDL 329 (413)
T ss_pred HHHHHHHHHHhhHhcCCHHHHHHHHHHHHHHHHHh
Confidence 46667778888999999999999999999876544
No 175
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=41.28 E-value=1.5e+02 Score=23.24 Aligned_cols=18 Identities=22% Similarity=0.267 Sum_probs=9.9
Q ss_pred hhhcCHHHHHHHHHHHHH
Q psy1437 18 DEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 18 D~~g~~~~A~~~Y~~ai~ 35 (232)
...|++++|+.+|..|+.
T Consensus 83 ~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 83 TSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 334566666666655553
No 176
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=39.91 E-value=39 Score=32.89 Aligned_cols=29 Identities=14% Similarity=0.021 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhhhhcCHHHHHHHHHHHHH
Q psy1437 7 VINAAQMAVKFDEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 7 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 35 (232)
|..+-.++..+-+.|+|++|+.+|.+||+
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~ 155 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIE 155 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45566777788888888888888888764
No 177
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=39.87 E-value=88 Score=28.51 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=12.7
Q ss_pred CchHHHHHHHHHHHHhhh
Q psy1437 2 GLPEEVINAAQMAVKFDE 19 (232)
Q Consensus 2 ~~~~~A~~~~~~Av~~D~ 19 (232)
+-.+.|+..+++|+++|.
T Consensus 50 g~~~eAl~~~~~Al~l~P 67 (356)
T PLN03088 50 GNFTEAVADANKAIELDP 67 (356)
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 345677888888877765
No 178
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=39.61 E-value=1.1e+02 Score=26.12 Aligned_cols=30 Identities=13% Similarity=0.069 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHH
Q psy1437 6 EVINAAQMAVKFDEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 6 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 35 (232)
++.-+...|.-+.+.|++++|+.+|++|++
T Consensus 145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~ 174 (280)
T PF13429_consen 145 SARFWLALAEIYEQLGDPDKALRDYRKALE 174 (280)
T ss_dssp -HHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444566777778888999999999998885
No 179
>cd01145 TroA_c Periplasmic binding protein TroA_c. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=39.29 E-value=90 Score=25.93 Aligned_cols=45 Identities=13% Similarity=0.191 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 30 YQAAARFLLETANSSSDENVAAWRQKAQQYLNRAEVLKDKIQVMF 74 (232)
Q Consensus 30 Y~~ai~~l~~~~~e~~~~~~~~~~~k~~eY~~RaE~lk~~~~~~~ 74 (232)
+...++.+...+.+.+|..++.|++....|+++.++|.+.++...
T Consensus 117 ~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~l 161 (203)
T cd01145 117 APALAKALADALIELDPSEQEEYKENLRVFLAKLNKLLREWERQF 161 (203)
T ss_pred HHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444445888889999999999999999998886553
No 180
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=39.12 E-value=48 Score=20.33 Aligned_cols=22 Identities=23% Similarity=0.066 Sum_probs=17.8
Q ss_pred hcCHHHHHHHHHHHHHHHHHHh
Q psy1437 20 ENQDEIAAYYYQAAARFLLETA 41 (232)
Q Consensus 20 ~g~~~~A~~~Y~~ai~~l~~~~ 41 (232)
.++|.+|+.=|++|+++....+
T Consensus 14 ~e~f~qA~~D~~~aL~i~~~l~ 35 (38)
T PF10516_consen 14 NENFEQAIEDYEKALEIQEELL 35 (38)
T ss_pred hccHHHHHHHHHHHHHHHHHhc
Confidence 5789999999999998766543
No 181
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=39.01 E-value=33 Score=19.41 Aligned_cols=16 Identities=38% Similarity=0.434 Sum_probs=13.4
Q ss_pred hcCHHHHHHHHHHHHH
Q psy1437 20 ENQDEIAAYYYQAAAR 35 (232)
Q Consensus 20 ~g~~~~A~~~Y~~ai~ 35 (232)
..++++|+.+|+.|++
T Consensus 18 ~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 18 KKDLEKALEYYKKAAE 33 (36)
T ss_pred CcCHHHHHHHHHHHHH
Confidence 4588999999999885
No 182
>KOG2991|consensus
Probab=38.61 E-value=2.6e+02 Score=24.97 Aligned_cols=68 Identities=10% Similarity=0.102 Sum_probs=52.4
Q ss_pred HHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh-c--cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1437 9 NAAQMAVKFDEENQDEIAAYYYQAAARFLLETA-N--SSSDENVAAWRQKAQQYLNRAEVLKDKIQVMFLR 76 (232)
Q Consensus 9 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~-~--e~~~~~~~~~~~k~~eY~~RaE~lk~~~~~~~~~ 76 (232)
.+++.++++-=.+.|.+-+.--++.+.-||.-+ . |--.++.-.+.+++++--+|++.|++.+...++.
T Consensus 237 ria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqa 307 (330)
T KOG2991|consen 237 RIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQA 307 (330)
T ss_pred cHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777778888888888888887777766 2 3344566689999999999999999998766543
No 183
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=38.16 E-value=1.3e+02 Score=26.16 Aligned_cols=31 Identities=19% Similarity=0.167 Sum_probs=19.0
Q ss_pred HHHHHHHHhhhhcCHHHHHHHHHHHHHHHHH
Q psy1437 9 NAAQMAVKFDEENQDEIAAYYYQAAARFLLE 39 (232)
Q Consensus 9 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~ 39 (232)
.....|...=+.+++++|+.+|++|++++..
T Consensus 76 ~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~ 106 (282)
T PF14938_consen 76 KAYEEAANCYKKGDPDEAIECYEKAIEIYRE 106 (282)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHHHHh
Confidence 3334455555555777777777777776654
No 184
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=37.82 E-value=94 Score=26.97 Aligned_cols=46 Identities=15% Similarity=0.210 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 29 YYQAAARFLLETANSSSDENVAAWRQKAQQYLNRAEVLKDKIQVMF 74 (232)
Q Consensus 29 ~Y~~ai~~l~~~~~e~~~~~~~~~~~k~~eY~~RaE~lk~~~~~~~ 74 (232)
.+...++.+-.++.+.+|..++.|++...+|.++...|.+.+....
T Consensus 103 n~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~ 148 (264)
T cd01020 103 TMSKVANALADALVKADPDNKKYYQANAKKFVASLKPLAAKIAELS 148 (264)
T ss_pred HHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555456888899999999999999999988886654
No 185
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=37.50 E-value=1.4e+02 Score=20.66 Aligned_cols=46 Identities=15% Similarity=0.203 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHhc---cCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 26 AAYYYQAAARFLLETAN---SSSDENVAAWRQKAQQYLNRAEVLKDKIQ 71 (232)
Q Consensus 26 A~~~Y~~ai~~l~~~~~---e~~~~~~~~~~~k~~eY~~RaE~lk~~~~ 71 (232)
+-..-.+|-++|.+.-. ..+.+.+..|..|+..|-.-...||+.+.
T Consensus 30 ~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 30 IERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33344444444444322 34668888999999999999888888764
No 186
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=37.41 E-value=18 Score=30.75 Aligned_cols=30 Identities=20% Similarity=0.341 Sum_probs=20.3
Q ss_pred hHHHHHHHCC--CCc------cCCCCCCcccccCEEEEe
Q psy1437 138 NVLYLAHRYE--IPM------EGACEASLACTTCHVYVK 168 (232)
Q Consensus 138 tLL~aa~~~g--i~l------~~~CgG~G~CgtC~v~v~ 168 (232)
.+.+.+.+.| +++ ...|| .|.||.|.+...
T Consensus 192 ~~~~~l~~~g~~~~~~~s~~~~m~Cg-~G~C~~C~~~~~ 229 (243)
T cd06192 192 AVVEALDEWLQLIKASVSNNSPMCCG-IGICGACTIETK 229 (243)
T ss_pred HHHHHHHhhcCCceEEEECCccccCc-cccccceEEEeC
Confidence 4555566654 222 35787 899999999854
No 187
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=36.95 E-value=62 Score=26.87 Aligned_cols=31 Identities=23% Similarity=0.222 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhh---------------hhcCHHHHHHHHHHHHH
Q psy1437 5 EEVINAAQMAVKFD---------------EENQDEIAAYYYQAAAR 35 (232)
Q Consensus 5 ~~A~~~~~~Av~~D---------------~~g~~~~A~~~Y~~ai~ 35 (232)
++++...+++++.+ ..|+|++|+..|.+|++
T Consensus 56 ~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~ 101 (198)
T PRK10370 56 EAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQ 101 (198)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45566666666654 77788888888887775
No 188
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=36.60 E-value=1e+02 Score=26.71 Aligned_cols=48 Identities=13% Similarity=0.188 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 28 YYYQAAARFLLETANSSSDENVAAWRQKAQQYLNRAEVLKDKIQVMFL 75 (232)
Q Consensus 28 ~~Y~~ai~~l~~~~~e~~~~~~~~~~~k~~eY~~RaE~lk~~~~~~~~ 75 (232)
..+...++.+-..+.+.+|..++.|++....|+++.++|.+.++....
T Consensus 119 ~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~~~~~~~~ 166 (266)
T cd01018 119 ANAKIMAENIYEALAELDPQNATYYQANLDALLAELDALDSEIRTILS 166 (266)
T ss_pred HHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555556554568888999999999999999999998866643
No 189
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=36.57 E-value=29 Score=36.19 Aligned_cols=30 Identities=23% Similarity=0.263 Sum_probs=23.5
Q ss_pred hHHHHHHHCCCCc------cCCCCCCcccccCEEEEe
Q psy1437 138 NVLYLAHRYEIPM------EGACEASLACTTCHVYVK 168 (232)
Q Consensus 138 tLL~aa~~~gi~l------~~~CgG~G~CgtC~v~v~ 168 (232)
.+.+.+.+.|++. ...|| .|.||.|.|.+.
T Consensus 861 av~~~l~~~Gv~~~vSlE~~M~CG-~G~C~~C~v~~~ 896 (944)
T PRK12779 861 AVSDLTKPYGVKTVASLNSIMVDA-TGMCGACMVPVT 896 (944)
T ss_pred HHHHHHHHcCCCeEEeecccccCC-CeeeCeeeeeee
Confidence 4566778889874 36796 899999999863
No 190
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=36.49 E-value=1.2e+02 Score=25.97 Aligned_cols=46 Identities=15% Similarity=0.248 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 29 YYQAAARFLLETANSSSDENVAAWRQKAQQYLNRAEVLKDKIQVMF 74 (232)
Q Consensus 29 ~Y~~ai~~l~~~~~e~~~~~~~~~~~k~~eY~~RaE~lk~~~~~~~ 74 (232)
.+...++.+-..+.+.+|..++.|++....|..|-+.|.+.++...
T Consensus 100 ~~~~~~~~Ia~~L~~~~P~~~~~y~~N~~~~~~~L~~l~~~~~~~~ 145 (256)
T PF01297_consen 100 NAKKMAEAIADALSELDPANKDYYEKNAEKYLKELDELDAEIKEKL 145 (256)
T ss_dssp HHHHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555554334889999999999999999999999886554
No 191
>PRK12370 invasion protein regulator; Provisional
Probab=36.39 E-value=50 Score=31.90 Aligned_cols=32 Identities=13% Similarity=0.132 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHhhh---------------hcCHHHHHHHHHHHHH
Q psy1437 4 PEEVINAAQMAVKFDE---------------ENQDEIAAYYYQAAAR 35 (232)
Q Consensus 4 ~~~A~~~~~~Av~~D~---------------~g~~~~A~~~Y~~ai~ 35 (232)
..+|+..+++|++.|. .|++++|+.+|++|++
T Consensus 320 ~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~ 366 (553)
T PRK12370 320 MIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANL 366 (553)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4678888888888763 4666666666666553
No 192
>KOG0060|consensus
Probab=35.84 E-value=2e+02 Score=28.70 Aligned_cols=22 Identities=14% Similarity=0.184 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1437 53 RQKAQQYLNRAEVLKDKIQVMF 74 (232)
Q Consensus 53 ~~k~~eY~~RaE~lk~~~~~~~ 74 (232)
...+..|..|+-+|.+.++..+
T Consensus 377 ls~lsGyt~Ri~el~~~l~d~~ 398 (659)
T KOG0060|consen 377 LSRLSGYTHRIGELMEVLDDLS 398 (659)
T ss_pred HHHhhhHHHHHHHHHHHHHHhc
Confidence 4567889999999999987665
No 193
>KOG0603|consensus
Probab=35.59 E-value=24 Score=34.85 Aligned_cols=66 Identities=21% Similarity=0.167 Sum_probs=54.9
Q ss_pred chHHHHHHHHHHHHhhhhcCHHHHHHHH-HHHHHHHHHH-hcc-CChHHHHHHHHHHH--HHHHHHHHHHH
Q psy1437 3 LPEEVINAAQMAVKFDEENQDEIAAYYY-QAAARFLLET-ANS-SSDENVAAWRQKAQ--QYLNRAEVLKD 68 (232)
Q Consensus 3 ~~~~A~~~~~~Av~~D~~g~~~~A~~~Y-~~ai~~l~~~-~~e-~~~~~~~~~~~k~~--eY~~RaE~lk~ 68 (232)
++..++-.+..|+.+|...+|..|+..| .+.+.++..- +.. ....+|..+..|+. .|.-||+++-+
T Consensus 96 ~~~~~~~~aelaLald~lh~l~iiyrd~k~enilld~~Ghi~~tdfglske~v~~~~~cgt~eymApEI~~ 166 (612)
T KOG0603|consen 96 ELDVAFYLAELALALDHLHKLGIAYRDYKLENVLLLLEGHIKLTDFGLSKEAVKEKIACGTYEYRAPEIIN 166 (612)
T ss_pred HHHHHHHHHHHHHHHhhcchhHHHHhcccccceeecccCccccCCchhhhHhHhhhhcccchhhhhhHhhh
Confidence 4567888999999999999999999999 7888777664 443 34666778888888 99999999988
No 194
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=35.29 E-value=67 Score=25.29 Aligned_cols=18 Identities=17% Similarity=0.078 Sum_probs=11.7
Q ss_pred hhhcCHHHHHHHHHHHHH
Q psy1437 18 DEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 18 D~~g~~~~A~~~Y~~ai~ 35 (232)
-..|++++|+.+|.++++
T Consensus 76 ~~~~~~~~A~~~~~~al~ 93 (234)
T TIGR02521 76 QQLGELEKAEDSFRRALT 93 (234)
T ss_pred HHcCCHHHHHHHHHHHHh
Confidence 345777777777776664
No 195
>KOG2003|consensus
Probab=35.09 E-value=47 Score=32.15 Aligned_cols=62 Identities=16% Similarity=0.223 Sum_probs=40.2
Q ss_pred HHHHHHHhhhhcCHHHHHHHHHHHHHHHH------HHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 10 AAQMAVKFDEENQDEIAAYYYQAAARFLL------ETANSSSDENVAAWRQKAQQYLNRAEVLKDKIQVM 73 (232)
Q Consensus 10 ~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~------~~~~e~~~~~~~~~~~k~~eY~~RaE~lk~~~~~~ 73 (232)
+.+.|--+|++|.-.+|+.||-++-+||- .++-.+-.. ..+-+|.-.|++||--++-...++
T Consensus 595 lskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyid--tqf~ekai~y~ekaaliqp~~~kw 662 (840)
T KOG2003|consen 595 LSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYID--TQFSEKAINYFEKAALIQPNQSKW 662 (840)
T ss_pred HHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHh--hHHHHHHHHHHHHHHhcCccHHHH
Confidence 34555668999999999999988777652 111000111 237788889999987766544333
No 196
>COG1447 CelC Phosphotransferase system cellobiose-specific component IIA [Carbohydrate transport and metabolism]
Probab=34.55 E-value=1e+02 Score=23.48 Aligned_cols=35 Identities=29% Similarity=0.112 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHH
Q psy1437 6 EVINAAQMAVKFDEENQDEIAAYYYQAAARFLLET 40 (232)
Q Consensus 6 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~ 40 (232)
+|.+.+-+|++.=++|+|++|=.+-++|-+.|..+
T Consensus 18 ~ArS~~~eAl~~Ak~g~f~~A~~~i~eA~~~l~eA 52 (105)
T COG1447 18 NARSKAYEALKAAKEGDFEEAEELIQEANDALNEA 52 (105)
T ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 57777888888888999998888888887777665
No 197
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=34.08 E-value=32 Score=19.90 Aligned_cols=14 Identities=36% Similarity=0.382 Sum_probs=11.5
Q ss_pred CHHHHHHHHHHHHH
Q psy1437 22 QDEIAAYYYQAAAR 35 (232)
Q Consensus 22 ~~~~A~~~Y~~ai~ 35 (232)
++++|+.+|++|++
T Consensus 23 d~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 23 DYEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHH
Confidence 57889999988875
No 198
>PRK14065 exodeoxyribonuclease VII small subunit; Provisional
Probab=33.97 E-value=1.3e+02 Score=22.11 Aligned_cols=35 Identities=17% Similarity=0.146 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhhhhcC--HHHHHHHHHHHHHHHHH
Q psy1437 5 EEVINAAQMAVKFDEENQ--DEIAAYYYQAAARFLLE 39 (232)
Q Consensus 5 ~~A~~~~~~Av~~D~~g~--~~~A~~~Y~~ai~~l~~ 39 (232)
+..++-++..++.=+.-+ -++++.+|.+|+.+|-.
T Consensus 28 E~klerakeiLe~LndpeisL~eSvkLYkeG~~lL~e 64 (86)
T PRK14065 28 EEHVHSLEQAIDRLNDPNLSLKDGMDLYKTAMQELFL 64 (86)
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 334444555544433333 35666666666655443
No 199
>PRK11189 lipoprotein NlpI; Provisional
Probab=33.87 E-value=70 Score=28.15 Aligned_cols=29 Identities=14% Similarity=0.069 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhhhhcCHHHHHHHHHHHHH
Q psy1437 7 VINAAQMAVKFDEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 7 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 35 (232)
|.-+..+++-++..|++++|+..|.+|++
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~ 92 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALA 92 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44455566666666666666666665553
No 200
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=33.51 E-value=31 Score=36.26 Aligned_cols=30 Identities=13% Similarity=0.247 Sum_probs=0.0
Q ss_pred chHHHHHHHCCCCcc------CCCCCCcccccCEEEE
Q psy1437 137 DNVLYLAHRYEIPME------GACEASLACTTCHVYV 167 (232)
Q Consensus 137 ~tLL~aa~~~gi~l~------~~CgG~G~CgtC~v~v 167 (232)
..+.+.+...||+.. ..|| .|.||.|+|.+
T Consensus 194 ~av~~~~~~~gi~~~vSle~~M~cG-~G~Cg~C~v~~ 229 (1006)
T PRK12775 194 NACVETTRPFGVKTMVSLNAIMVDG-TGMCGSCRVTV 229 (1006)
T ss_pred HHHHHHHHHCCCcEEECChhheeCc-cceeCCCEeee
No 201
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=33.44 E-value=1.8e+02 Score=20.66 Aligned_cols=32 Identities=25% Similarity=0.172 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHhhhhcCH--HHHHHHHHHHHH
Q psy1437 4 PEEVINAAQMAVKFDEENQD--EIAAYYYQAAAR 35 (232)
Q Consensus 4 ~~~A~~~~~~Av~~D~~g~~--~~A~~~Y~~ai~ 35 (232)
++.|+.-+..-|..=..|+. ++++.+|.+|+.
T Consensus 8 fEe~l~~LE~IV~~LE~~~l~Leesl~~ye~G~~ 41 (75)
T PRK14064 8 FEEAIAELETIVEALENGSASLEDSLDMYQKGIE 41 (75)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 44566666666665555554 677888888775
No 202
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=33.42 E-value=46 Score=33.55 Aligned_cols=29 Identities=21% Similarity=0.163 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHH
Q psy1437 6 EVINAAQMAVKFDEENQDEIAAYYYQAAA 34 (232)
Q Consensus 6 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai 34 (232)
+|..+-.+|+.+..-|+|++|+.+|.+++
T Consensus 153 ~~~~~~~~a~~l~~~g~~~~A~~~y~~~~ 181 (694)
T PRK15179 153 SAREILLEAKSWDEIGQSEQADACFERLS 181 (694)
T ss_pred CHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 45566778899999999999999999988
No 203
>COG1516 FliS Flagellin-specific chaperone FliS [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=33.17 E-value=1.2e+02 Score=24.04 Aligned_cols=39 Identities=18% Similarity=0.034 Sum_probs=35.3
Q ss_pred chHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh
Q psy1437 3 LPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA 41 (232)
Q Consensus 3 ~~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~ 41 (232)
+++.|++++.+|..+=..++++++-..-.+|++.|..+.
T Consensus 27 Lyeg~l~~l~~A~~aie~~~i~~k~~~i~ka~~Ii~eL~ 65 (132)
T COG1516 27 LYEGALKFLKRAKEAIEQEDIEEKNESIDKAIDIITELR 65 (132)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999988764
No 204
>PRK07440 hypothetical protein; Provisional
Probab=32.50 E-value=82 Score=21.79 Aligned_cols=30 Identities=10% Similarity=0.170 Sum_probs=23.3
Q ss_pred eeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCc
Q psy1437 116 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPM 150 (232)
Q Consensus 116 mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l 150 (232)
+++|++ +|+. +++..|.||.+.+...+++.
T Consensus 4 ~m~i~v---NG~~--~~~~~~~tl~~lL~~l~~~~ 33 (70)
T PRK07440 4 PITLQV---NGET--RTCSSGTSLPDLLQQLGFNP 33 (70)
T ss_pred ceEEEE---CCEE--EEcCCCCCHHHHHHHcCCCC
Confidence 466664 5866 77789999999999888854
No 205
>KOG4234|consensus
Probab=32.19 E-value=1.1e+02 Score=26.50 Aligned_cols=50 Identities=18% Similarity=0.200 Sum_probs=24.6
Q ss_pred HHHHHhhhhcCHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHH----HHHHHHHHHHHH
Q psy1437 12 QMAVKFDEENQDEIAAYYYQAAARFLLETANSSSDENVAAWRQKAQQ----YLNRAEVLKDKI 70 (232)
Q Consensus 12 ~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~e~~~~~~~~~~~k~~e----Y~~RaE~lk~~~ 70 (232)
+||-.+.+--+|++|+.=|++ ++ |.+|+.+ ..|.++.. --+|-|++|.-.
T Consensus 173 RRAeayek~ek~eealeDyKk-------i~-E~dPs~~-ear~~i~rl~~~i~ernEkmKee~ 226 (271)
T KOG4234|consen 173 RRAEAYEKMEKYEEALEDYKK-------IL-ESDPSRR-EAREAIARLPPKINERNEKMKEEM 226 (271)
T ss_pred HHHHHHHhhhhHHHHHHHHHH-------HH-HhCcchH-HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 455555555555555555554 22 3344443 23333332 235667777654
No 206
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=31.94 E-value=1.1e+02 Score=24.08 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=18.8
Q ss_pred hhcCHHHHHHHHHHHHHHHHHHh
Q psy1437 19 EENQDEIAAYYYQAAARFLLETA 41 (232)
Q Consensus 19 ~~g~~~~A~~~Y~~ai~~l~~~~ 41 (232)
..|++++|+.+|.+|+.++..++
T Consensus 125 ~~g~~~~A~~~~~~a~~~~~~a~ 147 (168)
T CHL00033 125 EQGDSEIAEAWFDQAAEYWKQAI 147 (168)
T ss_pred HcccHHHHHHHHHHHHHHHHHHH
Confidence 66788888888888888888776
No 207
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=31.55 E-value=1.3e+02 Score=28.65 Aligned_cols=54 Identities=9% Similarity=0.043 Sum_probs=36.9
Q ss_pred HHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHhccC--ChHHHHHHHHHHHHHHH
Q psy1437 8 INAAQMAVKFDEENQDEIAAYYYQAAARFLLETANSS--SDENVAAWRQKAQQYLN 61 (232)
Q Consensus 8 ~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~e~--~~~~~~~~~~k~~eY~~ 61 (232)
.+.++.|-++=.+|++++|+..++..|..+...+-++ .......+...+.||+-
T Consensus 205 ~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYil 260 (422)
T PF06957_consen 205 EERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYIL 260 (422)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHH
Confidence 4567888889999999999999999775554444222 23334467888889974
No 208
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=30.94 E-value=69 Score=21.41 Aligned_cols=24 Identities=21% Similarity=0.183 Sum_probs=19.9
Q ss_pred CCCEEEEEecCCchHHHHHHHCCCCc
Q psy1437 125 DGKRREIKGKVGDNVLYLAHRYEIPM 150 (232)
Q Consensus 125 ~G~~~~v~~~~G~tLL~aa~~~gi~l 150 (232)
+|+. +++.+|.||.+++...|++.
T Consensus 6 NG~~--~~~~~~~tl~~lL~~l~~~~ 29 (66)
T PRK05659 6 NGEP--RELPDGESVAALLAREGLAG 29 (66)
T ss_pred CCeE--EEcCCCCCHHHHHHhcCCCC
Confidence 5866 67789999999999988853
No 209
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=30.67 E-value=1.6e+02 Score=26.53 Aligned_cols=52 Identities=25% Similarity=0.269 Sum_probs=33.8
Q ss_pred CHHHHHHHHHHHHHHHHHHhc---cCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 22 QDEIAAYYYQAAARFLLETAN---SSSDENVAAWRQKAQQYLNRAEVLKDKIQVM 73 (232)
Q Consensus 22 ~~~~A~~~Y~~ai~~l~~~~~---e~~~~~~~~~~~k~~eY~~RaE~lk~~~~~~ 73 (232)
+.+|++.-.-.|+++|..+.. ..=.......|+|+....+|++..+..++.-
T Consensus 15 r~eEti~qi~~aL~~L~~v~~diF~rI~~Rv~~~~~~l~~i~~Ri~~~qaKi~~l 69 (297)
T PF11945_consen 15 RREETILQIADALEYLDKVSNDIFSRISARVERNRERLQAIQQRIEVAQAKIEKL 69 (297)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888899999998873 1222333445666666666666666666543
No 210
>PF06069 PerC: PerC transcriptional activator; InterPro: IPR024684 This family includes PerC, which is a transcriptional activator of EaeA/BfpA expression in enteropathogenic bacteria []. It also includes a number of uncharacterised proteins, such as Orf40 from bacteriophage SfV.
Probab=30.55 E-value=1.7e+02 Score=21.57 Aligned_cols=46 Identities=20% Similarity=0.138 Sum_probs=30.1
Q ss_pred HHHHHhhhhcCHHHHHHHHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHHH
Q psy1437 12 QMAVKFDEENQDEIAAYYYQAAARFLLETA-NSSSDENVAAWRQKAQQYLNRAE 64 (232)
Q Consensus 12 ~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~-~e~~~~~~~~~~~k~~eY~~RaE 64 (232)
++|.+++.+|-|--|-. .++.++ ...++..++.+..+-...+..|.
T Consensus 5 ~~Ae~LE~kGl~RRAA~-------rW~evm~~~~~~~eRe~~~~RR~~Cl~kak 51 (90)
T PF06069_consen 5 KKAEELEAKGLWRRAAT-------RWLEVMDLAETDKEREWIAQRREYCLRKAK 51 (90)
T ss_pred HHHHHHHHcccHHHHHH-------HHHHHHHHcCCHHHHHHHHHHHHHHHHhcc
Confidence 46777777776555544 444444 23477788888888777777553
No 211
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=29.86 E-value=1.1e+02 Score=20.40 Aligned_cols=25 Identities=20% Similarity=0.128 Sum_probs=20.0
Q ss_pred EEEEEeCCCCEEEEEecCCchHHHH
Q psy1437 118 NITFIDKDGKRREIKGKVGDNVLYL 142 (232)
Q Consensus 118 ~Vt~~~~~G~~~~v~~~~G~tLL~a 142 (232)
+|+|...+|..+++.+.+..|+.+.
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~l 26 (72)
T cd01809 2 EIKVKTLDSQTHTFTVEEEITVLDL 26 (72)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHH
Confidence 4666678898889999999988764
No 212
>KOG4555|consensus
Probab=29.54 E-value=1.3e+02 Score=24.32 Aligned_cols=30 Identities=13% Similarity=0.029 Sum_probs=25.8
Q ss_pred HHHHHHHHHhhhhcCHHHHHHHHHHHHHHH
Q psy1437 8 INAAQMAVKFDEENQDEIAAYYYQAAARFL 37 (232)
Q Consensus 8 ~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l 37 (232)
.++=.++|.+-..|+...|+..+.+|+.++
T Consensus 44 ~~LEl~~valaE~g~Ld~AlE~F~qal~l~ 73 (175)
T KOG4555|consen 44 RELELKAIALAEAGDLDGALELFGQALCLA 73 (175)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhc
Confidence 445578999999999999999999999766
No 213
>KOG4234|consensus
Probab=28.87 E-value=1.7e+02 Score=25.49 Aligned_cols=65 Identities=18% Similarity=0.034 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 5 EEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETANSSSDENVAAWRQKAQQYLNRAEVLKDKIQ 71 (232)
Q Consensus 5 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~e~~~~~~~~~~~k~~eY~~RaE~lk~~~~ 71 (232)
..+|-|..+|+.+=+-++.++||.--.+||++.-. |++.-..+...-.|+..|-+-.|-+|+++.
T Consensus 132 ~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt--y~kAl~RRAeayek~ek~eealeDyKki~E 196 (271)
T KOG4234|consen 132 ERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT--YEKALERRAEAYEKMEKYEEALEDYKKILE 196 (271)
T ss_pred HHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch--hHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34566666666666666666666666666653221 111112233344455556666666666653
No 214
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=28.71 E-value=88 Score=27.10 Aligned_cols=46 Identities=26% Similarity=0.291 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 26 AAYYYQAAARFLLETA-NSSSDENVAAWRQKAQQYLNRAEVLKDKIQVMFL 75 (232)
Q Consensus 26 A~~~Y~~ai~~l~~~~-~e~~~~~~~~~~~k~~eY~~RaE~lk~~~~~~~~ 75 (232)
=+..|.++++-++..+ .+.+... .+.+.+|-.|++.||..+...+.
T Consensus 28 rl~~yv~~L~~~l~~L~~~~~~~s----~e~l~eY~~ri~~Lk~l~~~~~~ 74 (251)
T PF09753_consen 28 RLEKYVETLREMLEELEESLSKPS----KEVLNEYSERIDFLKGLIEAEKL 74 (251)
T ss_pred hHHHHHHHHHHHHHHHHhccCCCC----HHHHHHHHHHHHHHHHHHhcccc
Confidence 3667888887777666 3312222 45678999999999999866553
No 215
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=28.47 E-value=2e+02 Score=19.65 Aligned_cols=46 Identities=11% Similarity=0.229 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhccCChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 29 YYQAAARFLLETANSSSDEN-VAAWRQKAQQYLNRAEVLKDKIQVMFL 75 (232)
Q Consensus 29 ~Y~~ai~~l~~~~~e~~~~~-~~~~~~k~~eY~~RaE~lk~~~~~~~~ 75 (232)
-+.+|++-++.++ .++... +.....++.+.-.+++.|+..|..-+.
T Consensus 15 ki~~Gae~m~~~~-~t~~~~~~~~~~~~l~~s~~kI~~L~~~L~~l~~ 61 (70)
T PF02185_consen 15 KIKEGAENMLQAY-STDKKKVLSEAESQLRESNQKIELLREQLEKLQQ 61 (70)
T ss_dssp HHHHHHHHHHHHH-CCHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH-ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888888876 334434 667888999999999999999977653
No 216
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=28.28 E-value=2.1e+02 Score=25.20 Aligned_cols=46 Identities=15% Similarity=0.192 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 29 YYQAAARFLLETANSSSDENVAAWRQKAQQYLNRAEVLKDKIQVMF 74 (232)
Q Consensus 29 ~Y~~ai~~l~~~~~e~~~~~~~~~~~k~~eY~~RaE~lk~~~~~~~ 74 (232)
.+...++.+-..+.+.+|..++.|++.++.|+++-++|.+.++...
T Consensus 129 n~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~~~~~~~ 174 (286)
T cd01019 129 NAAEVAQAVAEKLSALDPDNAATYAANLEAFNARLAELDATIKERL 174 (286)
T ss_pred HHHHHHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444455555555456888899999999999999999988886554
No 217
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=28.23 E-value=52 Score=27.19 Aligned_cols=28 Identities=21% Similarity=0.491 Sum_probs=18.5
Q ss_pred chHHHHHHHCC---CC--ccCCCCC--CcccccCE
Q psy1437 137 DNVLYLAHRYE---IP--MEGACEA--SLACTTCH 164 (232)
Q Consensus 137 ~tLL~aa~~~g---i~--l~~~CgG--~G~CgtC~ 164 (232)
.=+++.+++.| ++ ..++|-- ...||+|.
T Consensus 162 ~eI~~la~~~g~~~~~~~~t~sC~~~~~~~CG~C~ 196 (201)
T TIGR00364 162 AEIVQLADELGVLDLVIKLTYSCYAGGGEGCGKCP 196 (201)
T ss_pred HHHHHHHHHcCCccccHhhCCcCCCcCCCCCCCCh
Confidence 35788889999 64 4578842 23677763
No 218
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=28.04 E-value=95 Score=22.03 Aligned_cols=25 Identities=16% Similarity=-0.008 Sum_probs=14.2
Q ss_pred HHHHHHhhhhcCHHHHHHHHHHHHH
Q psy1437 11 AQMAVKFDEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 11 ~~~Av~~D~~g~~~~A~~~Y~~ai~ 35 (232)
-..|..+=+.|+|++|+.+|.++++
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~ 30 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLK 30 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555555666666666666553
No 219
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=28.03 E-value=1.7e+02 Score=25.52 Aligned_cols=47 Identities=11% Similarity=0.155 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 29 YYQAAARFLLETANSSSDENVAAWRQKAQQYLNRAEVLKDKIQVMFL 75 (232)
Q Consensus 29 ~Y~~ai~~l~~~~~e~~~~~~~~~~~k~~eY~~RaE~lk~~~~~~~~ 75 (232)
++...++.+-..+.+.+|..++.|++....|+.+.++|.+.++....
T Consensus 121 ~~~~~a~~Ia~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~~~~~~~~ 167 (282)
T cd01017 121 LAIQQVENIKDALIKLDPDNKEYYEKNAAAYAKKLEALDQEYRAKLA 167 (282)
T ss_pred HHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444555555554568888999999999999999999998866543
No 220
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=27.91 E-value=2.2e+02 Score=27.11 Aligned_cols=51 Identities=25% Similarity=0.340 Sum_probs=35.1
Q ss_pred HhhhhcCHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 16 KFDEENQDEIAAYYYQAAARFLLETANSSSDENVAAWRQKAQQYLNRAEVLKDKI 70 (232)
Q Consensus 16 ~~D~~g~~~~A~~~Y~~ai~~l~~~~~e~~~~~~~~~~~k~~eY~~RaE~lk~~~ 70 (232)
.+-+..+...|++.|..|+=+++.. ........++++.+++.++..++..+
T Consensus 330 ~L~~~s~WSka~Y~Y~~a~c~~~l~----~~~~~~~~~~~a~~l~~~vp~l~~k~ 380 (468)
T PF10300_consen 330 RLLKESKWSKAFYAYLAAACLLMLG----REEEAKEHKKEAEELFRKVPKLKQKK 380 (468)
T ss_pred HHHhccccHHHHHHHHHHHHHHhhc----cchhhhhhHHHHHHHHHHHHHHHhhh
Confidence 3444677788889998888665532 22344456788888888888887654
No 221
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=27.53 E-value=1.3e+02 Score=21.67 Aligned_cols=33 Identities=18% Similarity=0.022 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHH
Q psy1437 7 VINAAQMAVKFDEENQDEIAAYYYQAAARFLLE 39 (232)
Q Consensus 7 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~ 39 (232)
+..+...|.-.-.-|++++|+...++|+++-.+
T Consensus 41 ~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 41 AYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 344667777777779999999999999875553
No 222
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=27.50 E-value=2.8e+02 Score=21.08 Aligned_cols=49 Identities=16% Similarity=0.152 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 25 IAAYYYQAAARFLLETANSSSDENVAAWRQKAQQYLNRAEVLKDKIQVMF 74 (232)
Q Consensus 25 ~A~~~Y~~ai~~l~~~~~e~~~~~~~~~~~k~~eY~~RaE~lk~~~~~~~ 74 (232)
..+.+-+=+|+||+..= +.-......+.+++......+++++..+...+
T Consensus 59 klfrLaQl~ieYLl~~q-~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~ 107 (118)
T PF13815_consen 59 KLFRLAQLSIEYLLHCQ-EYLSSQLEQLEERLQELQQEIEKLKQKLKKQK 107 (118)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677778889888652 12334455677777777777777777776554
No 223
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=27.45 E-value=41 Score=27.46 Aligned_cols=20 Identities=25% Similarity=0.202 Sum_probs=15.5
Q ss_pred HhhhhcCHHHHHHHHHHHHH
Q psy1437 16 KFDEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 16 ~~D~~g~~~~A~~~Y~~ai~ 35 (232)
-+=..|+|++||.+|..|+.
T Consensus 78 ~~Q~~g~~~~AI~aY~~A~~ 97 (157)
T PRK15363 78 CCQAQKHWGEAIYAYGRAAQ 97 (157)
T ss_pred HHHHHhhHHHHHHHHHHHHh
Confidence 33457899999999998873
No 224
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=27.38 E-value=78 Score=30.81 Aligned_cols=15 Identities=20% Similarity=0.368 Sum_probs=7.3
Q ss_pred hHHHHHHHHHHHHhh
Q psy1437 4 PEEVINAAQMAVKFD 18 (232)
Q Consensus 4 ~~~A~~~~~~Av~~D 18 (232)
.++|+....+|++++
T Consensus 483 ~~~A~~~~~~Al~l~ 497 (615)
T TIGR00990 483 FDEAIEKFDTAIELE 497 (615)
T ss_pred HHHHHHHHHHHHhcC
Confidence 344555555555443
No 225
>PRK11189 lipoprotein NlpI; Provisional
Probab=27.20 E-value=1.1e+02 Score=26.95 Aligned_cols=24 Identities=4% Similarity=0.092 Sum_probs=16.6
Q ss_pred HHHHHhhhhcCHHHHHHHHHHHHH
Q psy1437 12 QMAVKFDEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 12 ~~Av~~D~~g~~~~A~~~Y~~ai~ 35 (232)
..|.-+-..|+|++|+..|..|++
T Consensus 103 ~lg~~~~~~g~~~~A~~~~~~Al~ 126 (296)
T PRK11189 103 YLGIYLTQAGNFDAAYEAFDSVLE 126 (296)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334444556888888888888775
No 226
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=26.52 E-value=2e+02 Score=20.43 Aligned_cols=37 Identities=24% Similarity=0.273 Sum_probs=28.0
Q ss_pred CceeEEEEEeCCCCEEEEEecCCchHHHHH----HHCCCCc
Q psy1437 114 DEIVNITFIDKDGKRREIKGKVGDNVLYLA----HRYEIPM 150 (232)
Q Consensus 114 ~~mv~Vt~~~~~G~~~~v~~~~G~tLL~aa----~~~gi~l 150 (232)
...+.|.+.+.+|....|.+...++|..+. .+.|++.
T Consensus 9 ~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~ 49 (87)
T cd01763 9 SEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSM 49 (87)
T ss_pred CCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCc
Confidence 445888888899999899999998886543 3456653
No 227
>KOG3906|consensus
Probab=26.39 E-value=1.4e+02 Score=26.90 Aligned_cols=48 Identities=17% Similarity=0.146 Sum_probs=32.1
Q ss_pred cCHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 21 NQDEIAAYYYQAAARFLLETANSSSDENVAAWRQKAQQYLNRAEVLKDKIQVM 73 (232)
Q Consensus 21 g~~~~A~~~Y~~ai~~l~~~~~e~~~~~~~~~~~k~~eY~~RaE~lk~~~~~~ 73 (232)
++|++.+.-|.++. +.++. ++..-+.....+.||.+++|.+.+.++..
T Consensus 219 ~K~eksv~r~Le~~--~~~a~---~~~~~eek~~qlae~~K~~ev~~SifDp~ 266 (399)
T KOG3906|consen 219 IKYEKSVNRYLEDL--AKQAA---DPSNTEEKAKQLAEYHKTAEVFQSIFDPR 266 (399)
T ss_pred HHHHHHHHHHHHHH--HHHhh---CCcchHHHHHHHHHHHHHHHHHHHhcChH
Confidence 56777777777643 44444 22223345667799999999999998543
No 228
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=26.28 E-value=64 Score=28.52 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=23.0
Q ss_pred HHHHhhhhcCHHHHHHHHHHHHHHHH
Q psy1437 13 MAVKFDEENQDEIAAYYYQAAARFLL 38 (232)
Q Consensus 13 ~Av~~D~~g~~~~A~~~Y~~ai~~l~ 38 (232)
.++-+|+.|++.+|=.-|.+|++++.
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~ 165 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAP 165 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhcc
Confidence 46779999999999999999998765
No 229
>KOG4162|consensus
Probab=25.88 E-value=2.9e+02 Score=28.31 Aligned_cols=61 Identities=20% Similarity=0.150 Sum_probs=38.9
Q ss_pred chHHHHHHHHHHHH--hhhhcCHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH
Q psy1437 3 LPEEVINAAQMAVK--FDEENQDEIAAYYYQAAARFLLETANSSSDENVAAWRQKAQQYLNRAE 64 (232)
Q Consensus 3 ~~~~A~~~~~~Av~--~D~~g~~~~A~~~Y~~ai~~l~~~~~e~~~~~~~~~~~k~~eY~~RaE 64 (232)
..+.|+++|++|+. ..+.+.. .+.-+-..||-|=..+...+.++.|+.+.+|.-.-++||-
T Consensus 409 ~~eegldYA~kai~~~~~~~~~l-~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av 471 (799)
T KOG4162|consen 409 LVEEGLDYAQKAISLLGGQRSHL-KPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAV 471 (799)
T ss_pred hhhhHHHHHHHHHHHhhhhhhhh-hhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHH
Confidence 35789999999998 3333332 2333344566555555445677777778888777777773
No 230
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=25.65 E-value=99 Score=19.59 Aligned_cols=15 Identities=27% Similarity=0.275 Sum_probs=7.3
Q ss_pred hcCHHHHHHHHHHHH
Q psy1437 20 ENQDEIAAYYYQAAA 34 (232)
Q Consensus 20 ~g~~~~A~~~Y~~ai 34 (232)
.|++++|+.++.+++
T Consensus 13 ~~~~~~A~~~~~~~~ 27 (100)
T cd00189 13 LGDYDEALEYYEKAL 27 (100)
T ss_pred HhcHHHHHHHHHHHH
Confidence 455555554444443
No 231
>PRK10972 Z-ring-associated protein; Provisional
Probab=25.53 E-value=74 Score=24.37 Aligned_cols=27 Identities=15% Similarity=0.175 Sum_probs=21.6
Q ss_pred eeEEEEEeCCCCEEEEEecCCc--hHHHHHHH
Q psy1437 116 IVNITFIDKDGKRREIKGKVGD--NVLYLAHR 145 (232)
Q Consensus 116 mv~Vt~~~~~G~~~~v~~~~G~--tLL~aa~~ 145 (232)
.|.|++. |+.+.|.|++|+ .|++||..
T Consensus 5 ~v~v~IL---gr~y~v~Cp~~e~~~L~~AA~~ 33 (109)
T PRK10972 5 PVDIQIF---GRSLRVNCPPEQRDALNQAAED 33 (109)
T ss_pred ceEEEEC---CceeEecCChhHHHHHHHHHHH
Confidence 4778876 888999999995 78887764
No 232
>cd01016 TroA Metal binding protein TroA. These proteins have been shown to function as initial receptors in ABC transport of Zn2+ and possibly Fe3+ in many eubacterial species. The TroA proteins belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=25.39 E-value=2e+02 Score=25.13 Aligned_cols=46 Identities=11% Similarity=0.226 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 29 YYQAAARFLLETANSSSDENVAAWRQKAQQYLNRAEVLKDKIQVMF 74 (232)
Q Consensus 29 ~Y~~ai~~l~~~~~e~~~~~~~~~~~k~~eY~~RaE~lk~~~~~~~ 74 (232)
.+...++.+-..+.+.+|..++.|++....|.++.+.|.+.+...-
T Consensus 109 ~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~~~~~~l 154 (276)
T cd01016 109 LWKYAVKAVAEVLSEKLPEHKDEFQANSEAYVEELDSLDAYAKKKI 154 (276)
T ss_pred HHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555456888899999999999999999998776543
No 233
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=25.19 E-value=94 Score=30.12 Aligned_cols=50 Identities=12% Similarity=-0.055 Sum_probs=30.2
Q ss_pred HHHhhhhcCHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 14 AVKFDEENQDEIAAYYYQAAARFLLETANSSSDENVAAWRQKAQQYLNRAEVLKDKI 70 (232)
Q Consensus 14 Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~e~~~~~~~~~~~k~~eY~~RaE~lk~~~ 70 (232)
|+..=..|++++|...|++|+++=.. ..--.+..|+.++.-|.++=-+..
T Consensus 427 a~~~~~~g~~~~A~~~l~rAl~L~ps-------~~a~~~lG~~~~~~G~~~eA~~~~ 476 (517)
T PRK10153 427 AVQALVKGKTDEAYQAINKAIDLEMS-------WLNYVLLGKVYELKGDNRLAADAY 476 (517)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44444679999999999888863221 122346677777766644444444
No 234
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=25.12 E-value=57 Score=25.94 Aligned_cols=30 Identities=17% Similarity=0.476 Sum_probs=20.9
Q ss_pred CCchHHHHHHHCCCCc--cCCCCC--CcccccCE
Q psy1437 135 VGDNVLYLAHRYEIPM--EGACEA--SLACTTCH 164 (232)
Q Consensus 135 ~G~tLL~aa~~~gi~l--~~~CgG--~G~CgtC~ 164 (232)
.-.-|++.+.+.|+++ .++|.- ...||+|.
T Consensus 125 ~K~ei~~~~~~~g~~~~~s~sC~~~~~~~CG~C~ 158 (169)
T cd01995 125 SKAEIVRLGGELGVPLELTWSCYNGGEKHCGECD 158 (169)
T ss_pred CHHHHHHHHhHcCCChhheeeccCCCCCCCCCCH
Confidence 3356888899999874 588842 33688874
No 235
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=25.06 E-value=2.3e+02 Score=19.38 Aligned_cols=46 Identities=17% Similarity=0.151 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 29 YYQAAARFLLETA-NSSSDENVAAWRQKAQQYLNRAEVLKDKIQVMF 74 (232)
Q Consensus 29 ~Y~~ai~~l~~~~-~e~~~~~~~~~~~k~~eY~~RaE~lk~~~~~~~ 74 (232)
-+.+|++-++.++ ..++.........+..+...+.+.|+..|..-+
T Consensus 23 ~~r~Gaenm~~~~~~~~~~~~~~~~~~~l~es~~ki~~Lr~~L~k~~ 69 (72)
T cd00089 23 KVKEGAENLLRLYSDEKKKKLLAEAEQMLRESKQKLELLKMQLEKLK 69 (72)
T ss_pred HHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888888776 323333456778889999999999999886543
No 236
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=25.00 E-value=1.4e+02 Score=19.97 Aligned_cols=25 Identities=28% Similarity=0.186 Sum_probs=20.2
Q ss_pred EEEEEeCCCCEEEEEecCCchHHHH
Q psy1437 118 NITFIDKDGKRREIKGKVGDNVLYL 142 (232)
Q Consensus 118 ~Vt~~~~~G~~~~v~~~~G~tLL~a 142 (232)
+|+|.+.+|+...+++.+..|+-+.
T Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~l 26 (76)
T cd01806 2 LIKVKTLTGKEIEIDIEPTDKVERI 26 (76)
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHH
Confidence 4677778899888999999988764
No 237
>KOG4797|consensus
Probab=24.85 E-value=3e+02 Score=21.21 Aligned_cols=42 Identities=19% Similarity=0.251 Sum_probs=29.5
Q ss_pred cCHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 21 NQDEIAAYYYQAAARFLLETANSSSDENVAAWRQKAQQYLNRAEVLKDK 69 (232)
Q Consensus 21 g~~~~A~~~Y~~ai~~l~~~~~e~~~~~~~~~~~k~~eY~~RaE~lk~~ 69 (232)
+++++|..+-+. -||.++. ...+.+|.++.+..+|-..|..-
T Consensus 48 NKIeQAMDLVKt---HLmfAVR----EEVe~Lk~qI~eL~er~~~Le~E 89 (123)
T KOG4797|consen 48 NKIEQAMDLVKT---HLMFAVR----EEVEVLKEQIRELEERNSALERE 89 (123)
T ss_pred hHHHHHHHHHHH---HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777765 4666664 35567888988888887776553
No 238
>PF11334 DUF3136: Protein of unknown function (DUF3136); InterPro: IPR021483 This family of proteins with unknown function appear to be restricted to Cyanobacteria.
Probab=24.78 E-value=1.3e+02 Score=20.90 Aligned_cols=37 Identities=19% Similarity=0.109 Sum_probs=24.0
Q ss_pred cCHHHHHHHHHHHHHHHHHHhccCChHH-HHHHHHHHHHHHHH
Q psy1437 21 NQDEIAAYYYQAAARFLLETANSSSDEN-VAAWRQKAQQYLNR 62 (232)
Q Consensus 21 g~~~~A~~~Y~~ai~~l~~~~~e~~~~~-~~~~~~k~~eY~~R 62 (232)
|+-++-+..|.+|+.+|+. +..+ .++=|.-+..|+++
T Consensus 4 gELea~y~~YckALr~Lv~-----~G~~~~~i~rTvCW~rL~~ 41 (64)
T PF11334_consen 4 GELEAGYPLYCKALRRLVA-----DGRSEEEIRRTVCWDRLET 41 (64)
T ss_pred HHHHcCchHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHHH
Confidence 4456677899999998885 3223 33335557776663
No 239
>PF02561 FliS: Flagellar protein FliS; InterPro: IPR003713 The fliD operon of several bacteria consists of three flagellar genes, fliD, fliS, and fliT, and is transcribed in this order []. In Bacillus subtilis the operon encoding the flagellar proteins FliD, FliS, and FliT is sigma D-dependent [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum; PDB: 1VH6_A 3IQC_B 3K1I_B 1ORJ_B 1ORY_A.
Probab=24.75 E-value=3.1e+02 Score=20.74 Aligned_cols=39 Identities=21% Similarity=0.066 Sum_probs=34.7
Q ss_pred chHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh
Q psy1437 3 LPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA 41 (232)
Q Consensus 3 ~~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~ 41 (232)
+++.|+..+++|...-..|+++++-..-..|.+.|..+.
T Consensus 25 Lyd~ai~~l~~a~~a~~~~~~~~~~~~l~ka~~Ii~~L~ 63 (122)
T PF02561_consen 25 LYDGAIEFLKQAKEAIEQGDIEEKNEALQKAQDIITELQ 63 (122)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999999999999998887765
No 240
>PRK05685 fliS flagellar protein FliS; Validated
Probab=24.66 E-value=2.1e+02 Score=22.28 Aligned_cols=39 Identities=18% Similarity=0.053 Sum_probs=33.3
Q ss_pred chHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh
Q psy1437 3 LPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA 41 (232)
Q Consensus 3 ~~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~ 41 (232)
+++.|+.++++|...=.+|+++++-..-.+|.+.|..+.
T Consensus 31 Lydgai~~l~~A~~ai~~~~~~~~~~~l~ka~~Ii~eL~ 69 (132)
T PRK05685 31 LYEGALSFLAQAKLAIEQGDIEAKGEYLSKAINIINGLR 69 (132)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999888888888877664
No 241
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=24.65 E-value=1.4e+02 Score=20.01 Aligned_cols=35 Identities=31% Similarity=0.365 Sum_probs=24.9
Q ss_pred eEEEEEeCCCCEEEEEecCCchHHHHHH----HCCCCcc
Q psy1437 117 VNITFIDKDGKRREIKGKVGDNVLYLAH----RYEIPME 151 (232)
Q Consensus 117 v~Vt~~~~~G~~~~v~~~~G~tLL~aa~----~~gi~l~ 151 (232)
++|++...+|+...+.+.+.+++-.... +.|++..
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~ 39 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPE 39 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCcc
Confidence 4677888899888899999987655433 4566653
No 242
>PF10531 SLBB: SLBB domain; InterPro: IPR019554 The soluble ligand-binding beta-grasp domain (SLBB) contains a beta-grasp fold. They are found in a diverse set of proteins that include the animal vitamin B12 uptake proteins; transcobalamin, intrinsic factor and the bacterial polysaccharide export proteins []. Some proteins may be part of a membrane complex involved in electron transport, others are probably involved in the export of the extracellular polysaccharide colanic acid from the cell to medium.; PDB: 3IAS_S 2FUG_A 3I9V_A 3M9S_1 3IAM_A 2YBB_1 2W8I_E 2W8H_E 2J58_D.
Probab=24.64 E-value=1.4e+02 Score=19.58 Aligned_cols=24 Identities=4% Similarity=-0.227 Sum_probs=18.1
Q ss_pred EEEEecCCchHHHHHHHCCCCccC
Q psy1437 129 REIKGKVGDNVLYLAHRYEIPMEG 152 (232)
Q Consensus 129 ~~v~~~~G~tLL~aa~~~gi~l~~ 152 (232)
..+++..|.||.+++..+|-..+.
T Consensus 12 G~~~~~~g~tl~~~i~~AGG~~~~ 35 (59)
T PF10531_consen 12 GTYELPPGTTLSDAIAQAGGLTPR 35 (59)
T ss_dssp EEEEEETT-BHHHHHHCTTSBBTT
T ss_pred EEEEECCCCcHHHHHHHhCCCCCC
Confidence 468888999999999988765444
No 243
>PRK14067 exodeoxyribonuclease VII small subunit; Provisional
Probab=24.55 E-value=2.4e+02 Score=20.31 Aligned_cols=34 Identities=18% Similarity=0.067 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHhhhhcCH--HHHHHHHHHHHHHH
Q psy1437 4 PEEVINAAQMAVKFDEENQD--EIAAYYYQAAARFL 37 (232)
Q Consensus 4 ~~~A~~~~~~Av~~D~~g~~--~~A~~~Y~~ai~~l 37 (232)
++.|+.-+..-|..=..|+. ++++.+|.+|+.++
T Consensus 9 fEeal~~LEeIV~~LE~~~l~Lees~~lyeeG~~L~ 44 (80)
T PRK14067 9 FEQQLARLQEIVDALEGGDLPLEESVALYKEGLGLA 44 (80)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 45566666666666556654 68888888888643
No 244
>PLN02789 farnesyltranstransferase
Probab=24.32 E-value=1.1e+02 Score=27.60 Aligned_cols=16 Identities=6% Similarity=0.237 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHhhhh
Q psy1437 5 EEVINAAQMAVKFDEE 20 (232)
Q Consensus 5 ~~A~~~~~~Av~~D~~ 20 (232)
.+++++..+|++.|.+
T Consensus 125 ~~el~~~~kal~~dpk 140 (320)
T PLN02789 125 NKELEFTRKILSLDAK 140 (320)
T ss_pred HHHHHHHHHHHHhCcc
Confidence 5678888888888864
No 245
>KOG4014|consensus
Probab=23.99 E-value=2.2e+02 Score=24.37 Aligned_cols=56 Identities=14% Similarity=0.226 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 4 PEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETANSSSDENVAAWRQKAQQYLNRAEVLKDKIQV 72 (232)
Q Consensus 4 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~e~~~~~~~~~~~k~~eY~~RaE~lk~~~~~ 72 (232)
+.+|..|+.+|.++|.=---..+-..|. + -|.-.|+ ..++..|-+||.+|.+-+++
T Consensus 184 Mdka~qfa~kACel~~~~aCAN~SrMyk---------l--GDGv~Kd--e~~Aekyk~rA~e~~~e~~k 239 (248)
T KOG4014|consen 184 MDKALQFAIKACELDIPQACANVSRMYK---------L--GDGVPKD--EDQAEKYKDRAKEIMEELRK 239 (248)
T ss_pred HHHHHHHHHHHHhcCChHHHhhHHHHHH---------c--cCCCCcc--HHHHHHHHHHHHHHHHHHHc
Confidence 5678888888888775322111111121 1 1111121 34567788999998887643
No 246
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=23.97 E-value=1.5e+02 Score=20.24 Aligned_cols=31 Identities=10% Similarity=0.170 Sum_probs=22.9
Q ss_pred EEEeCCCCEEEEEecCCchHHH----HHHHCCCCc
Q psy1437 120 TFIDKDGKRREIKGKVGDNVLY----LAHRYEIPM 150 (232)
Q Consensus 120 t~~~~~G~~~~v~~~~G~tLL~----aa~~~gi~l 150 (232)
.|..+.|+.+++++.+..|+.+ .....|++.
T Consensus 2 ~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~ 36 (74)
T cd01810 2 LVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQA 36 (74)
T ss_pred EEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCH
Confidence 4556889988999999999987 344556653
No 247
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=23.66 E-value=1.6e+02 Score=20.01 Aligned_cols=25 Identities=28% Similarity=0.223 Sum_probs=20.0
Q ss_pred EEEEEeCCCCEEEEEecCCchHHHH
Q psy1437 118 NITFIDKDGKRREIKGKVGDNVLYL 142 (232)
Q Consensus 118 ~Vt~~~~~G~~~~v~~~~G~tLL~a 142 (232)
+|+|...+|+.+.+++.+..|+.+.
T Consensus 2 ~i~vk~~~g~~~~l~v~~~~TV~~l 26 (77)
T cd01805 2 KITFKTLKQQTFPIEVDPDDTVAEL 26 (77)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHH
Confidence 4566667899889999999998764
No 248
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=23.63 E-value=1.7e+02 Score=21.01 Aligned_cols=26 Identities=15% Similarity=-0.006 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCEEEEEe--cCCchHHHH
Q psy1437 117 VNITFIDKDGKRREIKG--KVGDNVLYL 142 (232)
Q Consensus 117 v~Vt~~~~~G~~~~v~~--~~G~tLL~a 142 (232)
++|++..++|+...|.+ .+..|+.+.
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~l 29 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGEL 29 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHH
Confidence 67888888998855555 788899875
No 249
>PRK12370 invasion protein regulator; Provisional
Probab=23.63 E-value=1.2e+02 Score=29.37 Aligned_cols=32 Identities=13% Similarity=-0.196 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHhhh---------------hcCHHHHHHHHHHHHH
Q psy1437 4 PEEVINAAQMAVKFDE---------------ENQDEIAAYYYQAAAR 35 (232)
Q Consensus 4 ~~~A~~~~~~Av~~D~---------------~g~~~~A~~~Y~~ai~ 35 (232)
.++|+...++|++.+- .|++++|+..|.+|++
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~ 400 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK 400 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4667777777777663 4555666665555543
No 250
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=23.59 E-value=2.8e+02 Score=19.73 Aligned_cols=35 Identities=17% Similarity=0.147 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHhhhhcCH--HHHHHHHHHHHHHHH
Q psy1437 4 PEEVINAAQMAVKFDEENQD--EIAAYYYQAAARFLL 38 (232)
Q Consensus 4 ~~~A~~~~~~Av~~D~~g~~--~~A~~~Y~~ai~~l~ 38 (232)
++.|+.-+..-|+.=..|+. ++++.+|.+|+.++.
T Consensus 8 fEeal~~Le~IV~~LE~gdl~Leesl~lyeeG~~L~k 44 (76)
T PRK14068 8 FEEMMQELEQIVQKLDNETVSLEESLDLYQRGMKLSA 44 (76)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 45677777777777666665 789999999886444
No 251
>KOG1586|consensus
Probab=23.23 E-value=4.6e+02 Score=23.32 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=18.1
Q ss_pred hhhh-cCHHHHHHHHHHHHHHHHH
Q psy1437 17 FDEE-NQDEIAAYYYQAAARFLLE 39 (232)
Q Consensus 17 ~D~~-g~~~~A~~~Y~~ai~~l~~ 39 (232)
++++ .++++||.+|.+|.+++..
T Consensus 123 yEsdl~d~ekaI~~YE~Aae~yk~ 146 (288)
T KOG1586|consen 123 YESDLQDFEKAIAHYEQAAEYYKG 146 (288)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHcc
Confidence 4444 6778999999999998874
No 252
>KOG0543|consensus
Probab=23.14 E-value=2.8e+02 Score=26.09 Aligned_cols=50 Identities=24% Similarity=0.129 Sum_probs=29.9
Q ss_pred HHHhhhhcCHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH
Q psy1437 14 AVKFDEENQDEIAAYYYQAAARFLLETANSSSDENVAAWRQKAQQYLNRA 63 (232)
Q Consensus 14 Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~e~~~~~~~~~~~k~~eY~~Ra 63 (232)
+-.+=+.|+|..|+.-|..|+.+|..--.-.+...+....-|..-|+|=|
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA 264 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLA 264 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHH
Confidence 33455789999999999999987774221122333334444444444433
No 253
>KOG2460|consensus
Probab=22.80 E-value=2e+02 Score=28.23 Aligned_cols=59 Identities=19% Similarity=0.217 Sum_probs=42.6
Q ss_pred HHHHhhhhcCHHHHHHHHHHHHHHHHHHhc--cC-ChHHH-HHHHHHHHHHHHHHHHHHHHHH
Q psy1437 13 MAVKFDEENQDEIAAYYYQAAARFLLETAN--SS-SDENV-AAWRQKAQQYLNRAEVLKDKIQ 71 (232)
Q Consensus 13 ~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~--e~-~~~~~-~~~~~k~~eY~~RaE~lk~~~~ 71 (232)
-|+.+-..++|.||+.+|..|..|+.++.. ++ ..... ....+-+.+-..|-+.++..+-
T Consensus 428 iA~sY~a~~K~~EAlALy~Ra~sylqe~~~~l~s~~e~l~~~~~~eli~el~k~k~s~~a~~i 490 (593)
T KOG2460|consen 428 IAVSYQAKKKYSEALALYVRAYSYLQEVNSELESFKESLLPLLLLELISELQKRKESLGAAVI 490 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhcccchHHHHHHHHHHHHHHhhhhhhh
Confidence 477788889999999999999999999862 21 11222 3455666777777777777653
No 254
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=22.61 E-value=1.5e+02 Score=23.16 Aligned_cols=30 Identities=20% Similarity=0.154 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHH
Q psy1437 6 EVINAAQMAVKFDEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 6 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 35 (232)
.+..+...|..+-..|+|++|+.+|.++++
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~ 59 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALE 59 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 355566777778888888888888888764
No 255
>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []. This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.
Probab=22.57 E-value=72 Score=19.13 Aligned_cols=20 Identities=30% Similarity=0.562 Sum_probs=13.2
Q ss_pred EecCCchHHHHHHHCCCCcc
Q psy1437 132 KGKVGDNVLYLAHRYEIPME 151 (232)
Q Consensus 132 ~~~~G~tLL~aa~~~gi~l~ 151 (232)
.+.+|+|+-..|.+.|+...
T Consensus 2 ~V~~gDtl~~IA~~~~~~~~ 21 (44)
T PF01476_consen 2 TVQPGDTLWSIAKRYGISVD 21 (44)
T ss_dssp EE-TT--HHHHHHHTTS-HH
T ss_pred EECcCCcHHHHHhhhhhhHh
Confidence 35789999999999988754
No 256
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=22.39 E-value=2e+02 Score=20.03 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCEEEEEecCCchHHHH
Q psy1437 117 VNITFIDKDGKRREIKGKVGDNVLYL 142 (232)
Q Consensus 117 v~Vt~~~~~G~~~~v~~~~G~tLL~a 142 (232)
.+|+|....|+..++++.+..|+-+.
T Consensus 2 m~I~Vk~~~G~~~~l~v~~~~TV~~L 27 (78)
T cd01804 2 MNLNIHSTTGTRFDLSVPPDETVEGL 27 (78)
T ss_pred eEEEEEECCCCEEEEEECCcCHHHHH
Confidence 46777778899889999999988763
No 257
>PF04652 DUF605: Vta1 like; InterPro: IPR006745 This family contains proteins from the Eukaryota; functionally they are uncharacterised.; PDB: 2RKK_B 2RKL_B 3MHV_A.
Probab=22.27 E-value=2.7e+02 Score=25.30 Aligned_cols=58 Identities=19% Similarity=0.192 Sum_probs=34.3
Q ss_pred HHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 8 INAAQMAVKFDEENQDEIAAYYYQAAARFLLETANSSSDENVAAWRQKAQQYLNRAEVLKDKIQ 71 (232)
Q Consensus 8 ~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~e~~~~~~~~~~~k~~eY~~RaE~lk~~~~ 71 (232)
.-|+++|-++++.+ --=||+|..-|++..|..- .++ ...+.=+..-|++.|++|..+.
T Consensus 4 ~~~l~~a~e~~~~~-p~v~Y~c~~ya~~~~l~~~-~~~----~e~~~~~~~Ll~~lE~~K~~~~ 61 (380)
T PF04652_consen 4 SPFLKRAQELEKRD-PVVAYYCRLYAVEQILKLK-LRS----KECRQFLTSLLDKLEKMKAELG 61 (380)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHHTT-T-T------HHHHHHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHhhcC-CEEhHHHHHHHHHHHcCCC-CCC----hhHHHHHHHHHHHHHHhhhccC
Confidence 45899999999987 3445555555555443211 122 2345555666778888887665
No 258
>TIGR02899 spore_safA spore coat assembly protein SafA. in which one of which is found in most examples of endospore-forming bacteria. Lysin motifs are repeated in many proteins.
Probab=22.16 E-value=50 Score=19.42 Aligned_cols=19 Identities=21% Similarity=0.518 Sum_probs=15.2
Q ss_pred ecCCchHHHHHHHCCCCcc
Q psy1437 133 GKVGDNVLYLAHRYEIPME 151 (232)
Q Consensus 133 ~~~G~tLL~aa~~~gi~l~ 151 (232)
+.+|+||...+.+.|+++.
T Consensus 1 v~~gdtl~~IA~~~~~~~~ 19 (44)
T TIGR02899 1 VQKGDTLWKIAKKYGVDFD 19 (44)
T ss_pred CCCCCCHHHHHHHHCcCHH
Confidence 3578999999999887654
No 259
>KOG4626|consensus
Probab=21.92 E-value=77 Score=31.95 Aligned_cols=9 Identities=22% Similarity=0.272 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q psy1437 62 RAEVLKDKI 70 (232)
Q Consensus 62 RaE~lk~~~ 70 (232)
|-.+|-+.+
T Consensus 512 ~~~kl~siv 520 (966)
T KOG4626|consen 512 RMKKLVSIV 520 (966)
T ss_pred HHHHHHHHH
Confidence 333333333
No 260
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=21.40 E-value=1.9e+02 Score=19.68 Aligned_cols=33 Identities=15% Similarity=0.199 Sum_probs=23.7
Q ss_pred EEEEEeCCCCEEEEEecCCchHHHH----HHHCCCCc
Q psy1437 118 NITFIDKDGKRREIKGKVGDNVLYL----AHRYEIPM 150 (232)
Q Consensus 118 ~Vt~~~~~G~~~~v~~~~G~tLL~a----a~~~gi~l 150 (232)
+|+|...+|+...+++.+.+|+-+. +.+.|++.
T Consensus 2 ~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~ 38 (74)
T cd01807 2 FLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPE 38 (74)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCH
Confidence 4666677899888999999998763 33445553
No 261
>COG2440 FixX Ferredoxin-like protein [Energy production and conversion]
Probab=21.22 E-value=40 Score=25.37 Aligned_cols=14 Identities=43% Similarity=0.914 Sum_probs=10.9
Q ss_pred CCcccccCEEEEec
Q psy1437 156 ASLACTTCHVYVKH 169 (232)
Q Consensus 156 G~G~CgtC~v~v~~ 169 (232)
|---||||+|--..
T Consensus 66 gClECGTCRvlc~~ 79 (99)
T COG2440 66 GCLECGTCRVLCPH 79 (99)
T ss_pred CeeeccceeEecCC
Confidence 33579999998876
No 262
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=21.14 E-value=1.9e+02 Score=19.36 Aligned_cols=25 Identities=16% Similarity=0.161 Sum_probs=20.3
Q ss_pred EEEEEeCCCCEEEEEecCCchHHHH
Q psy1437 118 NITFIDKDGKRREIKGKVGDNVLYL 142 (232)
Q Consensus 118 ~Vt~~~~~G~~~~v~~~~G~tLL~a 142 (232)
+|+|...+|+...+++.+..|+.+.
T Consensus 2 ~i~v~~~~g~~~~~~v~~~~tV~~l 26 (76)
T cd01803 2 QIFVKTLTGKTITLEVEPSDTIENV 26 (76)
T ss_pred EEEEEcCCCCEEEEEECCcCcHHHH
Confidence 4677778898888999999998764
No 263
>KOG2581|consensus
Probab=21.11 E-value=1.9e+02 Score=27.55 Aligned_cols=98 Identities=18% Similarity=0.302 Sum_probs=60.3
Q ss_pred chHHHHHHHHHHHHhhhhcCHHHHHHHH------------HHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 3 LPEEVINAAQMAVKFDEENQDEIAAYYY------------QAAARFLLETA-NSSSDENVAAWRQKAQQYLNRAEVLKDK 69 (232)
Q Consensus 3 ~~~~A~~~~~~Av~~D~~g~~~~A~~~Y------------~~ai~~l~~~~-~e~~~~~~~~~~~k~~eY~~RaE~lk~~ 69 (232)
+.+.|-.++.+.+-.+++.|-+.|-++| ..|.++|++++ +.++ ...-.+++.+..++==.+-|.--
T Consensus 224 lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq-~~alGf~q~v~k~~ivv~ll~ge 302 (493)
T KOG2581|consen 224 LYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ-HAALGFRQQVNKLMIVVELLLGE 302 (493)
T ss_pred HHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc-hhhhhHHHHHHHHHHHHHHHcCC
Confidence 4678999999999999999989888765 45667788877 3222 44446777777766432222111
Q ss_pred HHHHHHhhcccCCCcccccCCccceeeeeeeccCccc
Q psy1437 70 IQVMFLRNLLCKLPPVVRPNNVHRIHTSVCTRHGEYE 106 (232)
Q Consensus 70 ~~~~~~~~~~s~~~~~~~~~~~~~f~~~~~l~~g~~~ 106 (232)
+- +....+ |+. +..--+.+|++++++.-|.+.
T Consensus 303 iP---ers~F~-Qp~-~~ksL~~Yf~Lt~AVr~gdlk 334 (493)
T KOG2581|consen 303 IP---ERSVFR-QPG-MRKSLRPYFKLTQAVRLGDLK 334 (493)
T ss_pred Cc---chhhhc-Ccc-HHHHHHHHHHHHHHHHHhhHH
Confidence 10 111122 221 122223479999999988876
No 264
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=21.02 E-value=1.6e+02 Score=17.57 Aligned_cols=18 Identities=22% Similarity=0.383 Sum_probs=13.4
Q ss_pred HHHhhhhcCHHHHHHHHH
Q psy1437 14 AVKFDEENQDEIAAYYYQ 31 (232)
Q Consensus 14 Av~~D~~g~~~~A~~~Y~ 31 (232)
|..+=..|+|++|+.+|.
T Consensus 8 a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 8 AYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHH
Confidence 666678899999999943
No 265
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=21.00 E-value=1.9e+02 Score=20.06 Aligned_cols=26 Identities=12% Similarity=-0.043 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCEEEEEecCCchHHHH
Q psy1437 117 VNITFIDKDGKRREIKGKVGDNVLYL 142 (232)
Q Consensus 117 v~Vt~~~~~G~~~~v~~~~G~tLL~a 142 (232)
+.|+|....|+...+++.+..|+-+.
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~l 28 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSEL 28 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHH
Confidence 46787788899888888999998763
No 266
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=20.81 E-value=2.7e+02 Score=22.69 Aligned_cols=54 Identities=19% Similarity=0.239 Sum_probs=33.1
Q ss_pred HHHHHhhhhcCHHHHHHHHHHHHHHHHHHhccCChHHHHHH------------HHHHHHHHHHHHHHHHHH
Q psy1437 12 QMAVKFDEENQDEIAAYYYQAAARFLLETANSSSDENVAAW------------RQKAQQYLNRAEVLKDKI 70 (232)
Q Consensus 12 ~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~e~~~~~~~~~------------~~k~~eY~~RaE~lk~~~ 70 (232)
.+|--+=+-|++++|+.+|..+.++-.. ...+.++. -..+..|+++|+.+-+.-
T Consensus 41 ~l~~~~~~~Gd~~~A~k~y~~~~~~~~~-----~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~ 106 (177)
T PF10602_consen 41 DLADHYCKIGDLEEALKAYSRARDYCTS-----PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKG 106 (177)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhcCC-----HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc
Confidence 4555566778889999999887765321 11111211 123777888888777663
No 267
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=20.71 E-value=2.5e+02 Score=18.13 Aligned_cols=34 Identities=15% Similarity=0.171 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhhhhcCH--HHHHHHHHHHHHHHH
Q psy1437 5 EEVINAAQMAVKFDEENQD--EIAAYYYQAAARFLL 38 (232)
Q Consensus 5 ~~A~~~~~~Av~~D~~g~~--~~A~~~Y~~ai~~l~ 38 (232)
+.++.-+...|+.=..|+. ++++.+|.+|..++.
T Consensus 2 Ee~~~~Le~Iv~~Le~~~~sLdes~~lyeeg~~l~~ 37 (53)
T PF02609_consen 2 EEAMERLEEIVEKLESGELSLDESLKLYEEGMELIK 37 (53)
T ss_dssp HHHHHHHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 4566666666665555554 788899999886544
No 268
>cd00118 LysM Lysin domain, found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function.
Probab=20.68 E-value=91 Score=17.54 Aligned_cols=20 Identities=35% Similarity=0.522 Sum_probs=16.2
Q ss_pred EEecCCchHHHHHHHCCCCc
Q psy1437 131 IKGKVGDNVLYLAHRYEIPM 150 (232)
Q Consensus 131 v~~~~G~tLL~aa~~~gi~l 150 (232)
..+..|+|+-..+.+.|+..
T Consensus 3 ~~v~~gdt~~~ia~~~~~~~ 22 (46)
T cd00118 3 YTVKKGDTLSSIAQRYGISV 22 (46)
T ss_pred EEECCCCCHHHHHHHHCcCH
Confidence 55688999999998887764
No 269
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=20.67 E-value=3.3e+02 Score=24.31 Aligned_cols=44 Identities=9% Similarity=0.031 Sum_probs=33.2
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 32 AAARFLLETANSSSDENVAAWRQKAQQYLNRAEVLKDKIQVMFL 75 (232)
Q Consensus 32 ~ai~~l~~~~~e~~~~~~~~~~~k~~eY~~RaE~lk~~~~~~~~ 75 (232)
.-++.+-..+.+.+|..++.|++.+..|..+.+.|.+.+.....
T Consensus 156 ~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~~~~~~l~ 199 (311)
T PRK09545 156 ATAVAIHDKLVELMPQSKAKLDANLKDFEAQLAQTDKQIGNQLA 199 (311)
T ss_pred HHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444568888999999999999999999998866543
No 270
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=20.61 E-value=3.3e+02 Score=19.45 Aligned_cols=35 Identities=14% Similarity=0.024 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHhhhhcCH--HHHHHHHHHHHHHHH
Q psy1437 4 PEEVINAAQMAVKFDEENQD--EIAAYYYQAAARFLL 38 (232)
Q Consensus 4 ~~~A~~~~~~Av~~D~~g~~--~~A~~~Y~~ai~~l~ 38 (232)
++.|+.-+...|..=..|+. ++++.+|.+|+.++-
T Consensus 12 fEea~~~LEeIv~~LE~~~l~Lees~~lyeeg~~L~k 48 (80)
T PRK00977 12 FEEALAELEEIVTRLESGDLPLEESLAAFERGVALAR 48 (80)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 45666666677766666654 688888888886443
No 271
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=20.59 E-value=3e+02 Score=25.32 Aligned_cols=47 Identities=28% Similarity=0.312 Sum_probs=30.1
Q ss_pred cccCCccceeeeeeeccCcccccCCCCCCceeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCc
Q psy1437 86 VRPNNVHRIHTSVCTRHGEYEWQDPKSEDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPM 150 (232)
Q Consensus 86 ~~~~~~~~f~~~~~l~~g~~~~~~~~~~~~mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l 150 (232)
+.++| +|..-++.-+.-. ++-+.|... |.. .--..+.+.|+++|||+
T Consensus 259 VItNP---TH~AVAL~Yd~~~-------~~aP~VvAK---G~d-----~~A~~Ir~iA~e~~VPi 305 (349)
T PRK12721 259 VVRNP---THIAVCLYYHPGE-------TPLPRVLEK---GKD-----AQALHIVKLAERNGIPV 305 (349)
T ss_pred EEEcC---CceEEEEEeCCCC-------CCCCEEEEE---eCc-----HHHHHHHHHHHHcCCCE
Confidence 66777 8999999885433 122334433 322 11247899999999996
No 272
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=20.56 E-value=1.9e+02 Score=21.29 Aligned_cols=27 Identities=15% Similarity=0.130 Sum_probs=19.2
Q ss_pred HHHHHHHHhhhhcCHHHHHHHHHHHHH
Q psy1437 9 NAAQMAVKFDEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 9 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 35 (232)
.....|..+-..|+|++|+.+|+.+++
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~ 45 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAA 45 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 355666777777888888888777654
No 273
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=20.45 E-value=2.9e+02 Score=20.56 Aligned_cols=35 Identities=14% Similarity=0.165 Sum_probs=26.5
Q ss_pred eeEEEEEeCCCCEEEEEecCCchHHH----HHHHCCCCc
Q psy1437 116 IVNITFIDKDGKRREIKGKVGDNVLY----LAHRYEIPM 150 (232)
Q Consensus 116 mv~Vt~~~~~G~~~~v~~~~G~tLL~----aa~~~gi~l 150 (232)
...|+|...+|+...+++.+..|+-+ +....||+.
T Consensus 27 ~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~ 65 (103)
T cd01802 27 TMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPV 65 (103)
T ss_pred CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCh
Confidence 36777778899998999999999877 344556554
No 274
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=20.40 E-value=1.8e+02 Score=19.30 Aligned_cols=25 Identities=8% Similarity=0.126 Sum_probs=18.7
Q ss_pred eEEEEEeCCCCEEEEEecCCchHHHH
Q psy1437 117 VNITFIDKDGKRREIKGKVGDNVLYL 142 (232)
Q Consensus 117 v~Vt~~~~~G~~~~v~~~~G~tLL~a 142 (232)
++|+|.. +|..+++++.+..|+-+.
T Consensus 1 i~i~vk~-~g~~~~i~v~~~~tv~~l 25 (71)
T cd01812 1 IRVRVKH-GGESHDLSISSQATFGDL 25 (71)
T ss_pred CEEEEEE-CCEEEEEEECCCCcHHHH
Confidence 3566664 488888999999988764
No 275
>PTZ00044 ubiquitin; Provisional
Probab=20.19 E-value=2.1e+02 Score=19.32 Aligned_cols=32 Identities=16% Similarity=0.187 Sum_probs=23.4
Q ss_pred EEEEEeCCCCEEEEEecCCchHHHH----HHHCCCC
Q psy1437 118 NITFIDKDGKRREIKGKVGDNVLYL----AHRYEIP 149 (232)
Q Consensus 118 ~Vt~~~~~G~~~~v~~~~G~tLL~a----a~~~gi~ 149 (232)
.|.|...+|+...+.+.+.+|+.+. ....|++
T Consensus 2 ~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~ 37 (76)
T PTZ00044 2 QILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGID 37 (76)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCC
Confidence 3566678899989999999998763 3344554
No 276
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=20.07 E-value=2.8e+02 Score=24.39 Aligned_cols=46 Identities=11% Similarity=0.206 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 29 YYQAAARFLLETANSSSDENVAAWRQKAQQYLNRAEVLKDKIQVMF 74 (232)
Q Consensus 29 ~Y~~ai~~l~~~~~e~~~~~~~~~~~k~~eY~~RaE~lk~~~~~~~ 74 (232)
.+...++.+-..+.+.+|..++.|++....|.++.++|.+.+...-
T Consensus 125 ~~~~~a~~Ia~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~~~~~~l 170 (287)
T cd01137 125 NAIIYVKNIAKALSEADPANAETYQKNAAAYKAKLKALDEWAKAKF 170 (287)
T ss_pred HHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555445888889999999999999999988876543
No 277
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=20.01 E-value=4.7e+02 Score=21.01 Aligned_cols=43 Identities=16% Similarity=0.163 Sum_probs=26.6
Q ss_pred cCHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 21 NQDEIAAYYYQAAARFLLETANSSSDENVAAWRQKAQQYLNRAEVLKDKIQ 71 (232)
Q Consensus 21 g~~~~A~~~Y~~ai~~l~~~~~e~~~~~~~~~~~k~~eY~~RaE~lk~~~~ 71 (232)
..+++|+.+|++=++.|..+. ..+.+.+.+--.|++.|...++
T Consensus 90 ~~~~eAie~l~k~~~~l~~~~--------~~l~~~l~~l~~~~~~l~~~~q 132 (145)
T COG1730 90 KSADEAIEFLKKRIEELEKAI--------EKLQQALAELAQRIEQLEQEAQ 132 (145)
T ss_pred ecHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888787777654 2244455555555555555554
Done!