Query psy1437
Match_columns 232
No_of_seqs 280 out of 1469
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 18:07:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1437.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1437hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hui_A Ferredoxin; cytochrome 100.0 4.3E-31 1.5E-35 207.0 10.0 110 111-220 16-126 (126)
2 2y5c_A Adrenodoxin-like protei 100.0 1.7E-30 5.7E-35 198.4 9.2 107 114-220 3-109 (109)
3 2bt6_A Adrenodoxin 1; rutheniu 100.0 2.6E-30 8.8E-35 196.9 9.2 105 112-216 2-108 (108)
4 3n9z_C Adrenodoxin; cytochrome 100.0 9.4E-32 3.2E-36 209.9 0.8 111 113-223 2-114 (123)
5 3lxf_A Ferredoxin; iron, iron- 100.0 6.6E-30 2.3E-34 193.8 9.7 102 117-218 1-103 (104)
6 1xlq_A Putidaredoxin, PDX; [2F 99.9 1.7E-27 5.7E-32 180.7 11.0 102 118-219 2-105 (106)
7 1uwm_A Ferredoxin VI, FDVI; el 99.9 8.8E-28 3E-32 182.2 9.3 103 117-219 1-105 (106)
8 2wlb_A ETP1-FD, electron trans 99.9 2.7E-27 9.4E-32 178.6 9.1 102 115-216 2-103 (103)
9 1b9r_A Protein (terpredoxin); 99.9 6.6E-28 2.3E-32 182.6 4.2 102 117-218 1-104 (105)
10 3ah7_A [2Fe-2S]ferredoxin; [2F 99.9 1.3E-26 4.4E-31 177.8 10.3 108 116-227 1-112 (113)
11 1i7h_A Ferredoxin; 2Fe-2S,elec 99.9 5.2E-24 1.8E-28 162.8 10.1 105 116-224 1-109 (111)
12 1l5p_A Ferredoxin; [2Fe-2S] cl 99.9 7.4E-24 2.5E-28 157.1 9.4 91 118-215 2-93 (93)
13 1wfd_A Hypothetical protein 15 99.9 1.2E-21 4E-26 145.5 11.7 81 2-82 10-91 (93)
14 2w2u_A Hypothetical P60 katani 99.8 1.7E-21 5.8E-26 141.7 7.0 69 2-70 14-83 (83)
15 2v6y_A AAA family ATPase, P60 99.8 3.5E-21 1.2E-25 140.1 6.8 68 3-70 7-75 (83)
16 1a70_A Ferredoxin; iron-sulfur 99.8 4.7E-21 1.6E-25 143.0 5.7 94 117-222 3-96 (97)
17 1frr_A Ferredoxin I; electron 99.8 5.9E-21 2E-25 141.5 6.2 93 116-220 1-93 (95)
18 1jq4_A Methane monooxygenase c 99.8 1.2E-21 4.1E-26 146.3 2.3 95 115-218 3-97 (98)
19 1czp_A Ferredoxin I; [2Fe-2S] 99.8 8.6E-21 2.9E-25 141.7 6.9 93 117-220 3-96 (98)
20 1awd_A Ferredoxin; electron tr 99.8 6.4E-21 2.2E-25 141.4 5.8 91 118-220 2-92 (94)
21 4a5x_A MITD1, MIT domain-conta 99.8 4.8E-20 1.6E-24 134.9 9.8 72 4-75 13-85 (86)
22 1wri_A Ferredoxin II, ferredox 99.8 1.1E-20 3.7E-25 139.9 5.2 91 116-219 1-91 (93)
23 1iue_A Ferredoxin; electron tr 99.8 1.2E-20 4E-25 141.1 5.1 93 117-221 3-95 (98)
24 1frd_A Heterocyst [2Fe-2S] fer 99.8 3.1E-20 1.1E-24 138.5 6.9 93 117-220 3-96 (98)
25 2v6x_A Vacuolar protein sortin 99.8 2E-19 6.8E-24 131.3 10.8 74 2-75 8-82 (85)
26 2cpt_A SKD1 protein, vacuolar 99.8 1.2E-18 4.3E-23 134.3 9.8 73 2-74 13-87 (117)
27 1krh_A Benzoate 1,2-dioxygenas 99.7 1.2E-18 4E-23 155.4 6.6 96 116-218 3-98 (338)
28 1doi_A 2Fe-2S ferredoxin; halo 99.7 1.4E-19 4.7E-24 141.9 -0.6 95 113-218 24-118 (128)
29 2ymb_A MITD1, MIT domain-conta 99.7 2E-19 7E-24 155.2 -0.6 83 3-85 19-102 (257)
30 3zyy_X Iron-sulfur cluster bin 99.7 3.3E-18 1.1E-22 164.2 5.5 92 116-220 3-94 (631)
31 2pia_A Phthalate dioxygenase r 99.6 6E-15 2.1E-19 130.9 9.2 87 114-215 235-321 (321)
32 2zan_A Vacuolar protein sortin 99.5 5.8E-15 2E-19 136.8 0.0 73 2-74 6-80 (444)
33 3i9v_3 NADH-quinone oxidoreduc 98.5 1.3E-07 4.5E-12 93.3 8.0 87 116-216 1-96 (783)
34 1t3q_A Quinoline 2-oxidoreduct 98.3 1E-06 3.5E-11 71.4 7.5 69 118-214 11-81 (168)
35 3c8y_A Iron hydrogenase 1; dit 98.2 1.4E-06 4.9E-11 83.1 7.2 68 116-215 1-74 (574)
36 1kf6_B Fumarate reductase iron 98.2 1.9E-06 6.3E-11 73.3 7.0 61 129-215 26-92 (243)
37 2bs2_B Quinol-fumarate reducta 97.9 1.4E-05 4.9E-10 67.7 6.6 61 129-216 26-94 (241)
38 3hrd_D Nicotinate dehydrogenas 97.9 2.7E-05 9.1E-10 62.7 6.9 49 118-168 5-55 (160)
39 1rm6_C 4-hydroxybenzoyl-COA re 97.8 3.6E-05 1.2E-09 61.9 6.8 69 118-214 4-74 (161)
40 1n62_A Carbon monoxide dehydro 97.8 4.1E-05 1.4E-09 61.9 7.1 49 118-168 5-55 (166)
41 1ffv_A CUTS, iron-sulfur prote 97.8 4.3E-05 1.5E-09 61.6 7.0 49 118-168 5-55 (163)
42 2wdq_B Succinate dehydrogenase 97.7 4.9E-05 1.7E-09 64.2 6.8 40 129-170 23-69 (238)
43 2h88_B Succinate dehydrogenase 97.6 0.0001 3.5E-09 63.0 7.0 75 114-215 9-101 (252)
44 2dl1_A Spartin; SPG20, MIT, st 97.6 0.00049 1.7E-08 52.2 9.4 67 4-70 19-94 (116)
45 3eab_A Spastin; spastin, MIT, 97.1 0.002 6.9E-08 46.6 7.9 59 3-61 12-79 (89)
46 2crb_A Nuclear receptor bindin 96.9 0.02 6.7E-07 41.6 10.9 68 4-71 12-80 (97)
47 1vlb_A Aldehyde oxidoreductase 96.7 0.0023 7.9E-08 64.1 7.0 50 116-167 1-52 (907)
48 3nvw_A Xanthine dehydrogenase/ 96.7 0.0018 6.2E-08 52.1 4.7 50 116-169 4-56 (164)
49 2w3s_A Xanthine dehydrogenase; 96.6 0.0027 9.1E-08 59.0 6.1 49 119-169 3-53 (462)
50 1dgj_A Aldehyde oxidoreductase 96.5 0.0026 8.8E-08 63.7 5.7 50 116-167 1-52 (907)
51 3vr8_B Iron-sulfur subunit of 96.4 0.0075 2.6E-07 52.5 7.4 40 128-168 56-102 (282)
52 2xze_A STAM-binding protein; h 96.1 0.027 9.1E-07 44.3 8.4 71 3-74 36-114 (146)
53 2a9u_A Ubiquitin carboxyl-term 96.1 0.033 1.1E-06 43.7 8.8 73 3-75 38-116 (144)
54 2rpa_A Katanin P60 ATPase-cont 95.6 0.11 3.9E-06 36.4 9.1 61 7-67 12-73 (78)
55 1y56_A Hypothetical protein PH 94.4 0.035 1.2E-06 51.2 4.7 48 116-168 15-67 (493)
56 2hr2_A Hypothetical protein; a 92.7 0.67 2.3E-05 36.6 8.8 31 11-41 61-91 (159)
57 3unc_A Xanthine dehydrogenase/ 92.4 0.14 4.7E-06 53.3 5.7 48 119-168 6-56 (1332)
58 2gag_A Heterotetrameric sarcos 91.3 0.27 9.1E-06 49.4 6.2 50 115-168 19-79 (965)
59 3rkv_A Putative peptidylprolyl 90.1 2.2 7.7E-05 31.7 9.2 38 4-41 8-45 (162)
60 3n71_A Histone lysine methyltr 90.0 2.5 8.7E-05 39.0 11.2 66 5-70 391-461 (490)
61 2hr2_A Hypothetical protein; a 89.9 0.4 1.4E-05 38.0 4.9 35 5-39 9-43 (159)
62 3gyz_A Chaperone protein IPGC; 88.2 1.4 4.9E-05 33.6 6.9 17 19-35 82-98 (151)
63 3ma5_A Tetratricopeptide repea 87.5 0.95 3.2E-05 31.4 5.1 29 7-35 7-35 (100)
64 2al3_A TUG long isoform; TUG U 87.3 0.39 1.3E-05 34.6 2.9 39 110-149 4-46 (90)
65 2xcb_A PCRH, regulatory protei 86.8 2.8 9.7E-05 30.5 7.7 21 15-35 60-80 (142)
66 3qww_A SET and MYND domain-con 86.7 4.3 0.00015 36.8 10.2 65 6-70 339-415 (433)
67 4gcn_A Protein STI-1; structur 86.5 0.93 3.2E-05 33.0 4.7 32 4-35 5-36 (127)
68 3qwp_A SET and MYND domain-con 86.2 2.9 9.8E-05 37.8 8.8 48 4-51 368-415 (429)
69 4gco_A Protein STI-1; structur 85.2 1.3 4.5E-05 32.2 5.0 24 12-35 52-75 (126)
70 3zyv_A AOH1; oxidoreductase, m 85.0 0.98 3.3E-05 47.0 5.6 49 119-169 10-61 (1335)
71 3qwp_A SET and MYND domain-con 84.1 5.4 0.00019 35.9 9.6 63 7-69 329-403 (429)
72 1zu2_A Mitochondrial import re 83.8 1 3.5E-05 35.6 4.0 68 3-73 61-147 (158)
73 4gcn_A Protein STI-1; structur 83.7 1.6 5.6E-05 31.6 4.9 27 11-37 46-72 (127)
74 3n71_A Histone lysine methyltr 83.3 1.9 6.5E-05 39.8 6.3 56 4-59 306-361 (490)
75 3rkv_A Putative peptidylprolyl 83.1 4 0.00014 30.2 7.1 25 10-34 66-90 (162)
76 4gco_A Protein STI-1; structur 82.3 1.9 6.4E-05 31.3 4.8 32 5-36 11-42 (126)
77 3gyz_A Chaperone protein IPGC; 81.7 2.1 7.2E-05 32.6 5.1 27 9-35 38-64 (151)
78 2qfc_A PLCR protein; TPR, HTH, 81.6 3.3 0.00011 34.1 6.7 67 8-74 197-274 (293)
79 3upv_A Heat shock protein STI1 81.1 2.3 7.8E-05 30.0 4.8 30 6-35 3-32 (126)
80 3u7z_A Putative metal binding 80.3 2.9 9.9E-05 30.6 5.1 34 113-147 5-40 (101)
81 3upv_A Heat shock protein STI1 80.2 2.8 9.7E-05 29.5 5.1 26 11-36 42-67 (126)
82 2l6j_A TPR repeat-containing p 79.7 2.4 8.2E-05 28.6 4.4 30 6-35 3-32 (111)
83 3plu_A Ubiquitin-like modifier 79.3 2.5 8.7E-05 30.4 4.4 38 113-150 18-59 (93)
84 3sz7_A HSC70 cochaperone (SGT) 79.1 2.9 9.9E-05 31.1 5.0 17 19-35 57-73 (164)
85 1hxi_A PEX5, peroxisome target 78.8 3.3 0.00011 29.7 5.1 32 4-35 33-79 (121)
86 3c3r_A Programmed cell death 6 78.5 5 0.00017 35.8 7.1 63 6-68 274-337 (380)
87 4g1t_A Interferon-induced prot 78.1 6.8 0.00023 34.0 7.8 59 10-68 54-125 (472)
88 4ga2_A E3 SUMO-protein ligase 77.6 3.5 0.00012 30.7 5.1 32 4-35 47-93 (150)
89 2kck_A TPR repeat; tetratricop 77.3 3.9 0.00013 27.2 4.9 18 17-34 16-33 (112)
90 2kat_A Uncharacterized protein 77.2 15 0.00051 25.1 9.1 24 12-35 24-47 (115)
91 1qqe_A Vesicular transport pro 77.2 3.4 0.00012 34.2 5.4 24 14-37 84-107 (292)
92 1na3_A Designed protein CTPR2; 76.7 3.9 0.00013 26.4 4.6 32 5-36 7-38 (91)
93 3bee_A Putative YFRE protein; 76.5 4.7 0.00016 28.2 5.2 18 4-21 25-42 (93)
94 1na3_A Designed protein CTPR2; 76.4 4.8 0.00017 26.0 5.0 17 3-19 24-40 (91)
95 2l05_A Serine/threonine-protei 74.3 4.8 0.00016 29.0 4.6 41 116-168 19-63 (95)
96 2vgx_A Chaperone SYCD; alterna 73.5 5.1 0.00018 29.7 5.1 17 19-35 67-83 (148)
97 3q49_B STIP1 homology and U bo 73.3 20 0.00069 24.8 8.4 18 18-35 54-71 (137)
98 3sz7_A HSC70 cochaperone (SGT) 73.2 4.8 0.00016 29.8 4.8 31 5-35 9-39 (164)
99 4ga2_A E3 SUMO-protein ligase 73.0 3.3 0.00011 30.8 3.8 32 4-35 13-59 (150)
100 1ihg_A Cyclophilin 40; ppiase 72.9 11 0.00038 32.8 7.8 35 5-39 221-255 (370)
101 3vtx_A MAMA; tetratricopeptide 72.9 3.7 0.00012 30.8 4.1 30 6-35 4-33 (184)
102 3k9i_A BH0479 protein; putativ 72.5 6.5 0.00022 27.4 5.2 31 6-36 26-56 (117)
103 2l6j_A TPR repeat-containing p 72.3 4.9 0.00017 27.0 4.4 17 3-19 19-35 (111)
104 1wxm_A A-RAF proto-oncogene se 72.1 4.1 0.00014 28.9 3.8 43 114-168 7-53 (86)
105 2wb7_A PT26-6P; extra chromoso 71.6 8.2 0.00028 35.9 6.7 28 24-51 449-476 (526)
106 3urz_A Uncharacterized protein 70.2 26 0.00089 27.0 8.8 15 20-34 101-115 (208)
107 1elw_A TPR1-domain of HOP; HOP 69.6 6.3 0.00022 26.3 4.4 30 6-35 3-32 (118)
108 3rau_A Tyrosine-protein phosph 69.5 27 0.00091 30.8 9.5 37 6-42 251-287 (363)
109 1hxi_A PEX5, peroxisome target 69.5 3.6 0.00012 29.5 3.2 19 2-20 65-83 (121)
110 1uh6_A Ubiquitin-like 5; beta- 69.4 6.2 0.00021 28.7 4.4 39 113-151 25-67 (100)
111 2vyi_A SGTA protein; chaperone 69.1 8.3 0.00028 26.1 5.0 24 11-34 16-39 (131)
112 2pl2_A Hypothetical conserved 68.6 6.9 0.00023 30.7 5.0 22 15-36 126-147 (217)
113 1elr_A TPR2A-domain of HOP; HO 68.2 8.8 0.0003 26.1 5.0 16 20-35 51-66 (131)
114 2pl2_A Hypothetical conserved 67.8 5.3 0.00018 31.4 4.2 15 20-34 52-66 (217)
115 3edt_B KLC 2, kinesin light ch 67.5 30 0.001 26.7 8.7 34 8-41 86-119 (283)
116 2fbn_A 70 kDa peptidylprolyl i 67.5 7.9 0.00027 29.6 5.1 26 10-35 91-116 (198)
117 2fbn_A 70 kDa peptidylprolyl i 67.2 6.2 0.00021 30.2 4.4 31 5-35 36-66 (198)
118 3ma5_A Tetratricopeptide repea 65.8 6.6 0.00022 26.8 3.9 35 2-36 21-70 (100)
119 4gyw_A UDP-N-acetylglucosamine 65.8 6.5 0.00022 38.0 5.1 34 2-35 57-105 (723)
120 1ug7_A 2610208M17RIK protein; 65.8 41 0.0014 25.4 9.5 58 9-66 21-84 (128)
121 4a1g_A Mitotic checkpoint seri 65.7 9.3 0.00032 29.8 5.0 50 7-64 101-150 (152)
122 2kck_A TPR repeat; tetratricop 65.5 5.7 0.00019 26.3 3.4 33 4-36 22-69 (112)
123 3vtx_A MAMA; tetratricopeptide 65.2 9.6 0.00033 28.3 5.0 22 14-35 114-135 (184)
124 3r9m_A BRO1 domain-containing 65.2 24 0.00084 31.2 8.4 36 6-41 252-287 (376)
125 3kdv_A DDRB, DNA damage respon 64.9 5.6 0.00019 31.4 3.5 33 115-147 6-38 (184)
126 3edt_B KLC 2, kinesin light ch 64.8 39 0.0013 26.1 8.9 29 13-41 133-161 (283)
127 1c1y_B Proto-onkogene serine/t 64.4 7.3 0.00025 27.0 3.7 40 117-168 4-47 (77)
128 2kc7_A BFR218_protein; tetratr 64.3 7.2 0.00024 25.9 3.8 24 12-35 5-28 (99)
129 1kt0_A FKBP51, 51 kDa FK506-bi 63.9 17 0.00058 32.4 7.2 33 5-37 266-298 (457)
130 1a17_A Serine/threonine protei 63.6 11 0.00037 27.1 4.9 30 6-35 12-41 (166)
131 3qww_A SET and MYND domain-con 63.5 15 0.00051 33.2 6.7 50 11-60 302-351 (433)
132 2lni_A Stress-induced-phosphop 63.4 9.7 0.00033 26.1 4.5 25 10-34 19-43 (133)
133 1zb1_A BRO1 protein; AIP1, BRO 62.5 21 0.00072 31.7 7.5 36 6-41 256-291 (392)
134 1elw_A TPR1-domain of HOP; HOP 62.2 14 0.00047 24.4 5.0 32 4-35 20-66 (118)
135 1elr_A TPR2A-domain of HOP; HO 62.2 12 0.00042 25.3 4.8 31 6-36 3-33 (131)
136 3esl_A Checkpoint serine/threo 62.1 21 0.0007 29.2 6.7 51 7-65 115-165 (202)
137 1a17_A Serine/threonine protei 61.8 13 0.00044 26.6 5.1 14 21-34 61-74 (166)
138 3ro3_A PINS homolog, G-protein 61.6 34 0.0012 23.6 7.3 36 4-39 6-41 (164)
139 1p5q_A FKBP52, FK506-binding p 61.5 10 0.00035 32.3 5.0 32 4-35 212-258 (336)
140 2wvi_A Mitotic checkpoint seri 61.1 47 0.0016 26.1 8.4 53 7-67 96-148 (164)
141 4i17_A Hypothetical protein; T 61.1 12 0.0004 29.0 5.0 15 4-18 23-37 (228)
142 3dbh_I NEDD8; cell cycle, acti 61.0 18 0.00062 24.3 5.4 41 110-150 6-50 (88)
143 1qqe_A Vesicular transport pro 60.6 11 0.00038 31.0 5.0 15 20-34 50-64 (292)
144 4abn_A Tetratricopeptide repea 60.3 35 0.0012 30.3 8.7 32 4-35 237-286 (474)
145 3q49_B STIP1 homology and U bo 60.2 12 0.00041 26.1 4.5 29 7-35 9-37 (137)
146 4abn_A Tetratricopeptide repea 60.0 7 0.00024 35.1 3.9 34 3-36 194-250 (474)
147 2kc7_A BFR218_protein; tetratr 59.9 10 0.00035 25.1 3.9 16 4-19 16-31 (99)
148 2vgx_A Chaperone SYCD; alterna 59.7 13 0.00044 27.4 4.8 29 7-35 21-49 (148)
149 1rrb_A RAF-1 RBD, RAF proto-on 59.7 8.3 0.00028 28.4 3.5 40 119-168 21-64 (107)
150 1zu2_A Mitochondrial import re 59.6 42 0.0014 26.1 7.9 39 3-41 17-73 (158)
151 2xcb_A PCRH, regulatory protei 59.6 13 0.00046 26.7 4.8 30 6-35 17-46 (142)
152 3ny5_A Serine/threonine-protei 58.9 9.9 0.00034 27.4 3.7 44 114-169 13-60 (96)
153 1o3u_A Conserved hypothetical 58.8 20 0.00067 26.8 5.7 38 4-41 13-50 (135)
154 3k9i_A BH0479 protein; putativ 58.8 15 0.00051 25.4 4.8 39 3-41 5-54 (117)
155 1xnf_A Lipoprotein NLPI; TPR, 58.8 14 0.00046 29.0 5.1 16 20-35 90-105 (275)
156 2ifu_A Gamma-SNAP; membrane fu 58.4 12 0.00042 31.0 4.9 26 12-38 121-146 (307)
157 1hh8_A P67PHOX, NCF-2, neutrop 58.2 14 0.00047 28.0 4.9 15 21-35 85-99 (213)
158 3u3w_A Transcriptional activat 58.1 17 0.00058 29.7 5.7 64 7-70 196-270 (293)
159 1p5q_A FKBP52, FK506-binding p 57.8 28 0.00095 29.5 7.2 32 6-37 146-177 (336)
160 1wol_A ST0689, 122AA long cons 57.5 21 0.00071 26.0 5.5 39 3-41 7-45 (122)
161 3ro3_A PINS homolog, G-protein 57.1 20 0.0007 24.9 5.4 31 9-39 51-81 (164)
162 3nf1_A KLC 1, kinesin light ch 57.0 57 0.002 25.6 8.7 37 4-40 24-60 (311)
163 3l8r_A PTCA, putative PTS syst 57.0 20 0.0007 26.8 5.4 35 6-40 36-70 (120)
164 2dzi_A Ubiquitin-like protein 56.9 20 0.00069 23.6 5.0 37 113-149 4-44 (81)
165 2v5f_A Prolyl 4-hydroxylase su 56.9 16 0.00055 25.3 4.7 24 12-35 51-74 (104)
166 2xs1_A Programmed cell death 6 56.9 23 0.00078 34.1 7.1 61 6-66 259-320 (704)
167 3hvz_A Uncharacterized protein 56.9 13 0.00044 25.6 3.9 34 119-154 8-41 (78)
168 2e2a_A Protein (enzyme IIA); h 56.1 22 0.00077 25.9 5.4 35 6-40 19-53 (105)
169 2if4_A ATFKBP42; FKBP-like, al 56.1 10 0.00035 32.3 4.1 34 4-37 176-209 (338)
170 3k1s_A PTS system, cellobiose- 56.0 22 0.00076 26.1 5.4 35 6-40 21-55 (109)
171 1wcr_A PTS system, N, N'-diace 55.9 23 0.00079 25.8 5.4 35 6-40 17-51 (103)
172 1ep3_B Dihydroorotate dehydrog 55.9 5.7 0.00019 32.9 2.3 29 138-168 205-239 (262)
173 1ufb_A TT1696 protein; structu 55.9 22 0.00076 25.9 5.5 39 3-41 7-45 (127)
174 1na0_A Designed protein CTPR3; 55.8 21 0.00072 23.7 5.1 28 8-35 10-37 (125)
175 2vyi_A SGTA protein; chaperone 55.7 19 0.00064 24.2 4.8 34 2-35 26-74 (131)
176 3urz_A Uncharacterized protein 54.9 12 0.00042 29.0 4.1 31 6-36 3-33 (208)
177 3nf1_A KLC 1, kinesin light ch 54.8 67 0.0023 25.2 8.8 30 11-40 73-102 (311)
178 2gow_A HCG-1 protein, ubiquiti 54.6 22 0.00076 26.6 5.3 30 113-142 14-43 (125)
179 2lni_A Stress-induced-phosphop 54.3 12 0.00041 25.6 3.6 33 3-35 31-78 (133)
180 1ouv_A Conserved hypothetical 54.3 16 0.00053 29.2 4.8 15 20-34 91-105 (273)
181 1kt0_A FKBP51, 51 kDa FK506-bi 54.0 27 0.00094 31.0 6.8 15 4-18 333-347 (457)
182 2dba_A Smooth muscle cell asso 53.7 13 0.00045 26.0 3.8 30 6-35 27-56 (148)
183 1wao_1 Serine/threonine protei 53.5 15 0.0005 33.2 4.9 16 19-34 52-67 (477)
184 3uq3_A Heat shock protein STI1 53.5 50 0.0017 25.1 7.6 29 7-35 79-107 (258)
185 1wwt_A Threonyl-tRNA synthetas 52.8 20 0.00067 24.6 4.4 37 114-154 9-46 (88)
186 3rjv_A Putative SEL1 repeat pr 51.9 13 0.00044 29.1 3.8 16 20-35 142-157 (212)
187 1ouv_A Conserved hypothetical 51.8 18 0.00062 28.8 4.8 16 20-35 127-142 (273)
188 1na0_A Designed protein CTPR3; 51.5 20 0.0007 23.7 4.4 32 4-35 25-71 (125)
189 2kat_A Uncharacterized protein 51.2 21 0.00072 24.3 4.5 33 3-35 34-81 (115)
190 2c2l_A CHIP, carboxy terminus 51.2 16 0.00056 30.0 4.5 15 4-18 20-34 (281)
191 3u3w_A Transcriptional activat 51.2 24 0.00081 28.8 5.5 30 10-39 158-187 (293)
192 4aez_C MAD3, mitotic spindle c 50.8 30 0.001 28.6 6.0 48 7-62 150-197 (223)
193 1wao_1 Serine/threonine protei 50.7 17 0.00059 32.7 4.9 18 3-20 55-72 (477)
194 1klx_A Cysteine rich protein B 50.1 20 0.00069 26.1 4.4 15 20-34 74-88 (138)
195 2fo7_A Synthetic consensus TPR 49.9 27 0.00093 23.3 4.9 15 20-34 48-62 (136)
196 3uq3_A Heat shock protein STI1 49.8 22 0.00074 27.3 4.8 18 19-36 50-67 (258)
197 3u30_A Ubiquitin, linear DI-ub 49.6 18 0.00063 27.9 4.3 42 109-150 13-58 (172)
198 2h6f_A Protein farnesyltransfe 49.6 7.1 0.00024 34.4 2.0 16 19-34 178-193 (382)
199 1v2y_A 3300001G02RIK protein; 49.2 29 0.001 25.1 5.0 28 114-141 5-32 (105)
200 3ulq_A Response regulator aspa 48.8 28 0.00095 29.3 5.7 28 10-37 227-254 (383)
201 4eqf_A PEX5-related protein; a 48.8 16 0.00054 30.4 4.1 32 4-35 193-241 (365)
202 1hh8_A P67PHOX, NCF-2, neutrop 48.7 10 0.00035 28.8 2.6 28 6-33 5-32 (213)
203 4i17_A Hypothetical protein; T 48.7 18 0.00061 27.9 4.1 29 8-36 8-36 (228)
204 3hym_B Cell division cycle pro 48.5 26 0.00088 28.1 5.2 17 19-35 248-264 (330)
205 4hcn_B Polyubiquitin, ubiquiti 48.4 20 0.0007 25.0 4.0 42 109-150 15-60 (98)
206 3v6c_B Ubiquitin; structural g 47.9 35 0.0012 23.2 5.2 39 113-151 14-56 (91)
207 3ieg_A DNAJ homolog subfamily 47.4 67 0.0023 25.7 7.7 23 13-35 278-300 (359)
208 2ifu_A Gamma-SNAP; membrane fu 47.0 16 0.00053 30.3 3.7 24 14-37 83-106 (307)
209 1pc2_A Mitochondria fission pr 46.7 74 0.0025 24.5 7.3 39 3-41 50-98 (152)
210 3u4t_A TPR repeat-containing p 46.6 22 0.00076 27.8 4.5 33 3-35 18-65 (272)
211 2qfc_A PLCR protein; TPR, HTH, 46.1 70 0.0024 25.8 7.7 27 12-38 160-186 (293)
212 1klx_A Cysteine rich protein B 46.0 26 0.00087 25.5 4.4 14 4-17 77-90 (138)
213 2q7f_A YRRB protein; TPR, prot 45.4 33 0.0011 26.1 5.2 15 20-34 138-152 (243)
214 1wh3_A 59 kDa 2'-5'-oligoadeny 45.2 35 0.0012 22.8 4.8 37 114-150 5-45 (87)
215 3qky_A Outer membrane assembly 45.2 21 0.00073 28.2 4.2 25 11-35 152-176 (261)
216 2xev_A YBGF; tetratricopeptide 45.0 24 0.00082 24.1 4.0 14 4-17 18-31 (129)
217 4dwf_A HLA-B-associated transc 44.4 37 0.0013 22.9 4.8 37 114-150 3-43 (90)
218 3q15_A PSP28, response regulat 44.3 84 0.0029 26.3 8.1 25 12-36 187-211 (378)
219 2h6f_A Protein farnesyltransfe 44.2 25 0.00085 30.8 4.8 32 4-35 113-160 (382)
220 2vq2_A PILW, putative fimbrial 44.2 34 0.0012 25.5 5.1 14 21-34 56-69 (225)
221 2l32_A Small archaeal modifier 44.0 41 0.0014 22.6 4.8 33 117-151 3-35 (74)
222 2gw1_A Mitochondrial precursor 43.6 27 0.00094 30.0 4.9 31 5-35 4-34 (514)
223 2v5f_A Prolyl 4-hydroxylase su 43.3 36 0.0012 23.4 4.7 30 8-37 6-35 (104)
224 3mkr_A Coatomer subunit epsilo 42.5 26 0.00089 29.0 4.4 34 2-35 144-194 (291)
225 3o10_A Sacsin; all-helical dom 42.4 44 0.0015 25.2 5.3 39 3-41 12-50 (141)
226 2vkj_A TM1634; membrane protei 42.2 46 0.0016 23.8 4.9 31 4-34 50-80 (106)
227 2yy0_A C-MYC-binding protein; 42.0 64 0.0022 20.4 5.2 43 32-74 2-46 (53)
228 3gw4_A Uncharacterized protein 41.8 39 0.0013 24.9 5.0 29 10-38 69-97 (203)
229 4gyw_A UDP-N-acetylglucosamine 41.7 26 0.00089 33.7 4.8 35 2-36 23-72 (723)
230 4eqf_A PEX5-related protein; a 41.7 34 0.0012 28.2 5.1 16 20-35 146-161 (365)
231 3cv0_A Peroxisome targeting si 41.5 36 0.0012 27.1 5.0 19 17-35 216-234 (327)
232 3gw4_A Uncharacterized protein 41.5 46 0.0016 24.5 5.4 32 5-36 105-136 (203)
233 4a1s_A PINS, partner of inscut 41.1 33 0.0011 28.8 4.9 30 6-35 47-76 (411)
234 2kmm_A Guanosine-3',5'-BIS(dip 40.9 34 0.0011 22.2 4.0 30 117-150 3-32 (73)
235 2dba_A Smooth muscle cell asso 40.0 44 0.0015 23.1 4.8 19 17-35 75-93 (148)
236 3ro2_A PINS homolog, G-protein 39.8 37 0.0013 26.8 4.8 25 10-34 8-32 (338)
237 4eew_A Large proline-rich prot 39.8 45 0.0015 22.3 4.6 37 114-150 15-55 (88)
238 1w3b_A UDP-N-acetylglucosamine 39.6 37 0.0013 28.4 5.0 17 18-34 248-264 (388)
239 3hym_B Cell division cycle pro 39.3 35 0.0012 27.2 4.7 16 20-35 138-153 (330)
240 3u64_A Protein TP_0956; tetrat 39.0 23 0.00078 30.8 3.5 18 3-20 178-195 (301)
241 1wgh_A Ubiquitin-like 3, HCG-1 38.9 50 0.0017 24.3 5.0 29 114-142 14-42 (116)
242 4g1t_A Interferon-induced prot 38.8 56 0.0019 27.9 6.2 23 18-40 105-127 (472)
243 2e2e_A Formate-dependent nitri 38.6 44 0.0015 24.4 4.8 16 19-34 56-71 (177)
244 1wia_A Hypothetical ubiquitin- 38.6 51 0.0017 22.6 4.8 31 114-144 5-35 (95)
245 2vsy_A XCC0866; transferase, g 38.4 26 0.00089 31.7 4.0 13 139-151 274-286 (568)
246 2lxa_A Ubiquitin-like protein 38.4 20 0.00067 25.0 2.5 27 116-142 1-29 (87)
247 2xev_A YBGF; tetratricopeptide 38.3 89 0.003 21.0 7.0 26 10-35 42-67 (129)
248 1fch_A Peroxisomal targeting s 38.2 42 0.0014 27.5 5.0 21 15-35 259-279 (368)
249 1vcs_A Vesicle transport throu 38.0 99 0.0034 22.0 6.4 52 24-75 41-95 (102)
250 2q7f_A YRRB protein; TPR, prot 38.0 41 0.0014 25.5 4.7 33 3-35 140-187 (243)
251 2wyq_A HHR23A, UV excision rep 37.9 50 0.0017 21.8 4.6 28 115-142 4-31 (85)
252 3phx_B Ubiquitin-like protein 37.9 49 0.0017 21.6 4.5 34 117-150 5-42 (79)
253 3ulq_A Response regulator aspa 37.8 1.1E+02 0.0037 25.5 7.8 30 7-36 184-213 (383)
254 2ond_A Cleavage stimulation fa 37.7 35 0.0012 28.0 4.5 32 4-35 150-197 (308)
255 4etr_A Putative uncharacterize 37.5 1.3E+02 0.0045 22.6 9.0 57 5-72 10-66 (153)
256 2hj8_A Interferon-induced 17 k 37.2 51 0.0018 22.3 4.6 35 115-149 3-41 (88)
257 1fch_A Peroxisomal targeting s 37.1 44 0.0015 27.3 5.0 24 12-35 222-245 (368)
258 3sf4_A G-protein-signaling mod 37.1 28 0.00096 28.8 3.8 17 21-37 61-77 (406)
259 3as5_A MAMA; tetratricopeptide 36.9 55 0.0019 23.2 5.0 14 21-34 90-103 (186)
260 2jpu_A ORF C02003 protein; sol 36.7 65 0.0022 24.3 5.4 41 1-41 1-41 (129)
261 1wyw_B Ubiquitin-like protein 36.4 45 0.0015 23.2 4.3 38 113-150 18-59 (97)
262 1yqb_A Ubiquilin 3; structural 36.1 55 0.0019 22.9 4.7 40 109-149 15-58 (100)
263 1wy8_A NP95-like ring finger p 35.8 72 0.0025 21.3 5.2 38 113-150 4-47 (89)
264 1wx7_A Ubiquilin 3; ubiquitin- 35.7 57 0.0019 22.9 4.8 33 109-142 10-42 (106)
265 3mtn_B UBA80, ubcep1, ubiquiti 35.6 52 0.0018 21.5 4.4 35 116-150 3-41 (85)
266 2y4t_A DNAJ homolog subfamily 35.3 33 0.0011 29.1 4.0 20 16-35 304-323 (450)
267 3qky_A Outer membrane assembly 35.3 36 0.0012 26.8 4.1 14 4-17 68-81 (261)
268 2pzi_A Probable serine/threoni 35.3 34 0.0012 32.2 4.5 32 4-35 449-495 (681)
269 2e2e_A Formate-dependent nitri 35.2 48 0.0016 24.2 4.5 16 3-18 59-74 (177)
270 3mv2_A Coatomer subunit alpha; 34.7 62 0.0021 28.3 5.6 53 9-61 116-170 (325)
271 3m62_B UV excision repair prot 34.6 29 0.00098 24.7 3.0 27 116-142 1-27 (106)
272 2yhc_A BAMD, UPF0169 lipoprote 34.5 53 0.0018 25.4 4.9 12 5-16 21-32 (225)
273 1ihg_A Cyclophilin 40; ppiase 34.3 87 0.003 26.9 6.6 27 8-34 274-300 (370)
274 4a1s_A PINS, partner of inscut 34.1 1.4E+02 0.0048 24.7 7.8 27 13-39 132-158 (411)
275 2if4_A ATFKBP42; FKBP-like, al 33.9 38 0.0013 28.6 4.2 24 12-35 235-258 (338)
276 3ro2_A PINS homolog, G-protein 33.8 1.6E+02 0.0055 22.8 7.8 19 19-37 275-293 (338)
277 3fp2_A TPR repeat-containing p 33.6 39 0.0013 29.4 4.3 15 4-18 394-408 (537)
278 1w3b_A UDP-N-acetylglucosamine 33.4 45 0.0015 27.8 4.5 32 4-35 185-231 (388)
279 2kdb_A Homocysteine-responsive 33.1 48 0.0017 23.5 4.0 34 109-142 16-51 (99)
280 1xnf_A Lipoprotein NLPI; TPR, 32.5 58 0.002 25.2 4.8 25 11-35 47-71 (275)
281 3fnb_A Acylaminoacyl peptidase 32.3 2E+02 0.0068 24.5 8.7 38 4-41 66-103 (405)
282 2ff4_A Probable regulatory pro 32.1 1.4E+02 0.0048 26.0 7.7 50 5-54 188-253 (388)
283 3iqc_A FLIS, flagellar protein 32.0 1.6E+02 0.0054 21.9 8.0 39 3-41 32-70 (131)
284 2uyz_B Small ubiquitin-related 31.4 61 0.0021 21.1 4.1 35 116-150 3-41 (79)
285 2yhc_A BAMD, UPF0169 lipoprote 31.0 56 0.0019 25.3 4.5 28 8-35 5-32 (225)
286 2klc_A Ubiquilin-1; ubiquitin- 30.8 69 0.0024 22.4 4.5 37 113-150 22-62 (101)
287 2vsy_A XCC0866; transferase, g 30.6 58 0.002 29.3 5.0 33 4-36 73-120 (568)
288 1e0g_A Membrane-bound lytic mu 30.0 29 0.001 20.3 2.0 21 131-151 5-25 (48)
289 2vq2_A PILW, putative fimbrial 29.9 72 0.0024 23.6 4.8 30 6-35 7-36 (225)
290 2fo7_A Synthetic consensus TPR 29.6 54 0.0018 21.6 3.7 24 12-35 6-29 (136)
291 1jy2_N Fibrinogen alpha chain; 29.4 86 0.0029 19.9 4.1 21 51-71 29-49 (53)
292 1vh6_A Flagellar protein FLIS; 29.4 1E+02 0.0035 23.5 5.5 38 3-40 29-66 (145)
293 1wgg_A Ubiquitin carboxyl-term 29.3 68 0.0023 22.3 4.2 38 112-150 3-45 (96)
294 1xn7_A Hypothetical protein YH 29.3 24 0.00082 24.1 1.7 26 138-164 35-65 (78)
295 1wgr_A Growth factor receptor- 29.2 1.4E+02 0.0046 21.4 5.8 31 117-147 10-40 (100)
296 3ieg_A DNAJ homolog subfamily 28.8 66 0.0023 25.7 4.7 15 4-18 19-33 (359)
297 3ly7_A Transcriptional activat 28.2 69 0.0024 28.5 4.9 16 20-35 290-305 (372)
298 1wx8_A Riken cDNA 4931431F19; 28.1 90 0.0031 21.2 4.7 37 113-150 14-54 (96)
299 1v86_A DNA segment, CHR 7, way 27.9 87 0.003 21.6 4.6 38 112-150 13-54 (95)
300 1wxv_A BAG-family molecular ch 27.7 1.1E+02 0.0036 20.7 5.0 36 113-149 4-48 (92)
301 3sf4_A G-protein-signaling mod 27.5 2.2E+02 0.0074 23.1 7.8 27 13-39 93-119 (406)
302 2c2l_A CHIP, carboxy terminus 27.4 57 0.0019 26.6 4.1 24 13-36 78-101 (281)
303 2r5s_A Uncharacterized protein 27.0 50 0.0017 24.4 3.4 21 14-34 115-135 (176)
304 3mfq_A TROA, high-affinity zin 26.8 1.8E+02 0.0062 24.2 7.2 45 29-73 111-155 (282)
305 2r5s_A Uncharacterized protein 26.6 30 0.001 25.7 2.0 24 11-34 10-33 (176)
306 3mkr_B Coatomer subunit alpha; 26.4 72 0.0025 27.8 4.6 60 9-68 104-167 (320)
307 2rkk_A Vacuolar protein sortin 26.4 1.8E+02 0.006 22.9 6.5 61 6-71 5-65 (168)
308 3rjv_A Putative SEL1 repeat pr 26.4 71 0.0024 24.6 4.3 25 11-35 22-46 (212)
309 3n3k_B Ubiquitin; hydrolase, p 26.3 53 0.0018 21.6 3.1 35 116-150 3-41 (85)
310 2hsb_A Hypothetical UPF0332 pr 26.2 1.3E+02 0.0045 21.4 5.5 39 3-41 8-46 (126)
311 1orj_A Flagellar protein FLIS; 25.8 2.1E+02 0.007 21.3 8.5 39 3-41 25-67 (130)
312 3u4t_A TPR repeat-containing p 25.6 80 0.0027 24.4 4.5 17 19-35 86-102 (272)
313 2gw1_A Mitochondrial precursor 25.5 2.4E+02 0.0082 23.8 8.0 18 20-37 202-219 (514)
314 2qyw_A Vesicle transport throu 25.4 1.8E+02 0.0062 20.5 6.7 47 24-70 52-101 (102)
315 1wgd_A Homocysteine-responsive 25.2 86 0.003 21.3 4.1 29 114-142 5-35 (93)
316 3fp2_A TPR repeat-containing p 25.2 40 0.0014 29.3 2.8 29 7-35 25-53 (537)
317 2oh3_A Rubrerythrin, COG1633: 24.9 2.2E+02 0.0076 21.3 7.9 58 5-70 4-61 (167)
318 2ond_A Cleavage stimulation fa 24.7 96 0.0033 25.2 5.0 33 3-35 184-231 (308)
319 1pq4_A Periplasmic binding pro 24.7 1.4E+02 0.0046 25.1 6.0 46 29-74 140-185 (291)
320 2kk8_A Uncharacterized protein 24.6 1.1E+02 0.0037 20.6 4.5 33 117-149 11-47 (84)
321 2ca5_A MXIH; transport protein 24.6 1E+02 0.0034 21.6 4.2 39 22-60 18-58 (85)
322 2prs_A High-affinity zinc upta 24.4 1.6E+02 0.0054 24.5 6.4 44 31-74 126-169 (284)
323 3q15_A PSP28, response regulat 24.4 95 0.0032 25.9 5.0 24 15-38 149-172 (378)
324 2hj1_A Hypothetical protein; s 23.9 57 0.002 23.2 2.9 37 114-150 10-49 (97)
325 1ndd_A NEDD8, protein (ubiquit 23.9 92 0.0032 19.6 3.9 32 118-149 2-37 (76)
326 2y4t_A DNAJ homolog subfamily 23.8 90 0.0031 26.3 4.8 26 9-34 28-53 (450)
327 2xm6_A Protein corresponding t 23.7 81 0.0028 27.6 4.6 15 20-34 380-394 (490)
328 3mkr_A Coatomer subunit epsilo 23.6 86 0.0029 25.7 4.5 25 11-35 204-228 (291)
329 1ttn_A DC-UBP, dendritic cell- 23.6 1.1E+02 0.0037 21.4 4.5 29 114-142 21-49 (106)
330 1v5t_A 8430435I17RIK protein; 23.4 63 0.0022 22.0 3.1 37 113-150 4-45 (90)
331 3a9j_A Ubiquitin; protein comp 23.0 1E+02 0.0035 19.4 4.0 32 118-149 2-37 (76)
332 1pd7_B MAD1; PAH2, SIN3, eukar 23.0 48 0.0016 18.0 1.7 12 54-65 9-20 (26)
333 2o1e_A YCDH; alpha-beta protei 22.9 1.7E+02 0.0057 24.9 6.3 45 31-75 142-186 (312)
334 3as5_A MAMA; tetratricopeptide 22.7 1.1E+02 0.0038 21.5 4.5 20 16-35 119-138 (186)
335 4gq4_A Menin; tumor suppressor 22.5 1.8E+02 0.0061 26.7 6.4 64 3-72 286-362 (489)
336 1gk7_A Vimentin; intermediate 22.5 1.3E+02 0.0044 17.7 3.9 22 49-70 8-29 (39)
337 2rkl_A Vacuolar protein sortin 22.0 1.6E+02 0.0055 18.7 5.1 35 4-38 17-51 (53)
338 1toa_A Tromp-1, protein (perip 21.8 1.8E+02 0.0063 24.7 6.4 42 33-74 149-190 (313)
339 2xm6_A Protein corresponding t 21.8 88 0.003 27.4 4.4 15 20-34 200-214 (490)
340 2k02_A Ferrous iron transport 21.7 33 0.0011 24.0 1.2 25 138-163 35-64 (87)
341 3qou_A Protein YBBN; thioredox 21.5 1.1E+02 0.0037 24.9 4.7 27 9-35 119-145 (287)
342 2ojr_A Ubiquitin; lanthide-bin 21.5 1.3E+02 0.0045 21.2 4.6 36 114-149 33-72 (111)
343 3gi1_A LBP, laminin-binding pr 21.5 1.7E+02 0.0059 24.4 6.0 46 29-74 129-174 (286)
344 1oah_A Cytochrome C nitrite re 21.5 3.4E+02 0.012 25.0 8.5 68 4-71 383-461 (519)
345 3cx3_A Lipoprotein; zinc-bindi 21.4 1.7E+02 0.0058 24.3 6.0 41 34-74 132-172 (284)
346 1tke_A Threonyl-tRNA synthetas 21.3 61 0.0021 26.1 3.0 28 116-147 1-28 (224)
347 3a4r_A Nfatc2-interacting prot 21.3 1.9E+02 0.0064 19.2 5.7 35 115-149 6-45 (79)
348 3vdz_A Ubiquitin-40S ribosomal 21.1 1.1E+02 0.0038 21.7 4.1 36 115-150 34-73 (111)
349 1j8c_A Ubiquitin-like protein 21.1 1.7E+02 0.006 21.2 5.3 35 114-149 30-68 (125)
350 1v5o_A 1700011N24RIK protein; 20.9 1.8E+02 0.0062 20.1 5.2 37 114-150 5-49 (102)
351 4a20_A Ubiquitin-like protein 20.9 1.2E+02 0.004 21.3 4.1 30 113-142 16-47 (98)
352 3a1g_B Polymerase basic protei 20.8 33 0.0011 20.5 0.9 17 59-75 3-19 (40)
353 1vp7_A Exodeoxyribonuclease VI 20.8 2.4E+02 0.0081 20.2 8.6 35 4-38 32-68 (100)
354 4b4t_Q 26S proteasome regulato 20.5 86 0.0029 26.4 3.9 27 9-35 6-32 (434)
355 3onj_A T-snare VTI1; helix, HA 20.3 2.3E+02 0.0078 19.8 6.4 48 26-73 39-92 (97)
356 4fbj_B NEDD8; effector-HOST ta 20.3 1.2E+02 0.0041 20.3 4.0 33 118-150 2-38 (88)
357 2kdi_A Ubiquitin, vacuolar pro 20.3 1.3E+02 0.0043 21.6 4.3 31 119-149 12-46 (114)
358 2bwf_A Ubiquitin-like protein 20.3 1.3E+02 0.0045 19.1 4.1 32 117-149 5-40 (77)
359 3cv0_A Peroxisome targeting si 20.1 96 0.0033 24.4 4.0 26 10-35 24-49 (327)
No 1
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=99.97 E-value=4.3e-31 Score=206.95 Aligned_cols=110 Identities=35% Similarity=0.661 Sum_probs=102.5
Q ss_pred CCCCceeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCC-ccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCc
Q psy1437 111 KSEDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIP-MEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLA 189 (232)
Q Consensus 111 ~~~~~mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~-l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~ 189 (232)
+.+++|++|||++++|.+++|.+.+|+|||++|+++||+ +++.|+|.|.||||+|+|.+|+++.++++++.|.++|+.+
T Consensus 16 ~~~~~M~~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~gi~~~C~G~G~CgtC~v~v~~G~~~~l~~~~~~E~~~L~~~ 95 (126)
T 3hui_A 16 PRGSHMAKINFVDHTGETRTVEVEEGATVMEAAIRNAIPGVEAECGGACACATCHVYVDEAWREKVGGPSPMEEDMLDFG 95 (126)
T ss_dssp CTTCSEEEEEEECTTSCEEEEEEETTSBHHHHHHTTTCTTCCCTTSSSSCCSTTEEEECGGGHHHHCCCCHHHHHHHTTS
T ss_pred CCCCCceEEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCCccCCCCCCCCCCCEEEECCCcccccCCCCHHHhhhcCch
Confidence 446889999999899988889999999999999999999 9999999999999999999998888899999999999855
Q ss_pred CCCCCCcEEeeeeEEecCCCceEEEecCccc
Q psy1437 190 PFLKDNSRLGCQIILTKELEGIEVTLPKATR 220 (232)
Q Consensus 190 ~~~~~g~RLaCQ~~~~~dl~g~~V~lp~~~~ 220 (232)
.++.+|||||||+++.+||||++|++|+.+|
T Consensus 96 ~e~~~g~RLaCQ~~~~~dldgl~V~lp~~~r 126 (126)
T 3hui_A 96 YDVRPNSRLSCQIKVSNELDGLIVTTPERQR 126 (126)
T ss_dssp SSCCTTEEEGGGCBCCGGGTTEEEECCSCCC
T ss_pred hhccCCeEEeeeCEECcCCCcEEEEecCcCC
Confidence 7899999999999999999999999998765
No 2
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=99.96 E-value=1.7e-30 Score=198.41 Aligned_cols=107 Identities=64% Similarity=1.120 Sum_probs=99.6
Q ss_pred CceeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCC
Q psy1437 114 DEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLK 193 (232)
Q Consensus 114 ~~mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~ 193 (232)
++|++|+|++++|..++|.+.+|+|||++|+++||++++.|+|.|.||||+|+|.+|+++.++++++.|..+|+...++.
T Consensus 3 ~~m~~v~~~~~~g~~~~~~~~~g~tlL~aa~~~gi~i~~~C~g~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~ 82 (109)
T 2y5c_A 3 SDVVNVVFVDRSGQRIPVSGRVGDNVLHLAQRHGVDLEGACEASLACSTCHVYVSEDHLDLLPPPEEREDDMLDMAPLLQ 82 (109)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTCBHHHHHHHTTCCCCCTTSSSSSCCTTEEEECHHHHTTSCCCCHHHHHHHHTSTTCC
T ss_pred CCcEEEEEEcCCCCEEEEEECCCCcHHHHHHHcCCCCCcCCCCCcCcCccEEEECCcchhhcCCCCHHHHHHHhccccCC
Confidence 57999999889999889999999999999999999999999989999999999999988888999999999997546899
Q ss_pred CCcEEeeeeEEecCCCceEEEecCccc
Q psy1437 194 DNSRLGCQIILTKELEGIEVTLPKATR 220 (232)
Q Consensus 194 ~g~RLaCQ~~~~~dl~g~~V~lp~~~~ 220 (232)
+|||||||+++++|++|++|++|+.+|
T Consensus 83 ~g~rLaCq~~~~~d~~~~~v~ip~~~~ 109 (109)
T 2y5c_A 83 ENSRLGCQIVLTPELEGAEFTLPKITR 109 (109)
T ss_dssp TTEEEGGGCBCCGGGTTCEEECCSCCC
T ss_pred CCcEeeEEeEEecCCCeEEEEecCCCC
Confidence 999999999999999999999998764
No 3
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=99.96 E-value=2.6e-30 Score=196.94 Aligned_cols=105 Identities=40% Similarity=0.789 Sum_probs=96.5
Q ss_pred CCCceeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCcc--CCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCc
Q psy1437 112 SEDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPME--GACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLA 189 (232)
Q Consensus 112 ~~~~mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~--~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~ 189 (232)
+..+|++|+|++++|..++|++.+|+|||++|+++||+++ +.|+|.|+||||||+|.+|+++.++++++.|.++|+..
T Consensus 2 ~~~~m~~V~~~~~~g~~~~v~~~~g~tLL~aa~~~gi~i~~~~~Cgg~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~ 81 (108)
T 2bt6_A 2 SSGDKITVHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHIFEKLEAITDEENDMLDLA 81 (108)
T ss_dssp ---CEEEEEEECTTSCEEEEEEETTCBHHHHHHHTTCCCTTTTTTSSSSSBSTTEEECCHHHHTTSCCCCHHHHHHHTTC
T ss_pred CCCceEEEEEECCCCCEEEEEECCCChHHHHHHHcCCCCCcccCCCCCcCcCCCEEEECccccccCCCCCHHHHHHHhCc
Confidence 3467999999889999888999999999999999999999 99999999999999999998888999999999999855
Q ss_pred CCCCCCcEEeeeeEEecCCCceEEEec
Q psy1437 190 PFLKDNSRLGCQIILTKELEGIEVTLP 216 (232)
Q Consensus 190 ~~~~~g~RLaCQ~~~~~dl~g~~V~lp 216 (232)
.++.+|||||||+++.+|+||++|++|
T Consensus 82 ~~~~~g~rLaCq~~~~~d~d~~~V~~p 108 (108)
T 2bt6_A 82 YGLTDRSRLGCQICLTKAMDNMTVRVP 108 (108)
T ss_dssp TTCCTTEEEGGGCBCCGGGTTEEEECC
T ss_pred ccCCCCcEeeEEEEecCCCCCEEEEcC
Confidence 789999999999999999999999987
No 4
>3n9z_C Adrenodoxin; cytochrome P450, 22-hydroxycholesterol, cholesterol SIDE CHA cleavage, structural genomics; HET: HEM HC9; 2.17A {Homo sapiens} SCOP: d.15.4.1 PDB: 3na1_C* 3p1m_A* 1l6u_A 1l6v_A 1e6e_B* 1cje_A
Probab=99.96 E-value=9.4e-32 Score=209.91 Aligned_cols=111 Identities=38% Similarity=0.735 Sum_probs=26.0
Q ss_pred CCceeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCcc--CCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcC
Q psy1437 113 EDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPME--GACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAP 190 (232)
Q Consensus 113 ~~~mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~--~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~ 190 (232)
+++|++|||++++|..++|++.+|+|||++|+++||+++ +.|+|.|.||||||+|.+|+++.++++++.|.++|+.+.
T Consensus 2 ~~~~v~Vtf~~~~G~~~~v~~~~G~tLl~aa~~~gi~i~g~~~CgG~g~CgtC~v~v~~~~~~~l~~~~~~E~~~L~~~~ 81 (123)
T 3n9z_C 2 SEDKITVHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFEDHIYEKLDAITDEENDMLDLAY 81 (123)
T ss_dssp -----------------------------------------CTTCSSSSCSTTBC--------------CHHHHHHCC--
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCCcCCCCCCCCEeCCCeeEEeccccccCCCCChHHHhhhcccc
Confidence 478999999999998889999999999999999999999 999999999999999998878889999999999998667
Q ss_pred CCCCCcEEeeeeEEecCCCceEEEecCcccccc
Q psy1437 191 FLKDNSRLGCQIILTKELEGIEVTLPKATRNFY 223 (232)
Q Consensus 191 ~~~~g~RLaCQ~~~~~dl~g~~V~lp~~~~~~~ 223 (232)
++.+|||||||++++++|||++|+||+.+++..
T Consensus 82 ~~~~~~RLaCQ~~v~~~ld~l~V~ip~~~~~~~ 114 (123)
T 3n9z_C 82 GLTDRSRLGCQICLTKSMDNMTVRVPETVADAR 114 (123)
T ss_dssp ------CBCC-----------------------
T ss_pred cccCCeEEeeEeEEccCCCCEEEEECccccccc
Confidence 899999999999999999999999999887753
No 5
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=99.96 E-value=6.6e-30 Score=193.82 Aligned_cols=102 Identities=33% Similarity=0.587 Sum_probs=96.0
Q ss_pred eEEEEEeCCCCEEEEEecCCchHHHHHHHCCCC-ccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCC
Q psy1437 117 VNITFIDKDGKRREIKGKVGDNVLYLAHRYEIP-MEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDN 195 (232)
Q Consensus 117 v~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~-l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g 195 (232)
++|||++++|..++|.+.+|+|||++|+++||+ +++.|+|.|.||||+|+|.+|+++.++++++.|..+|+.+.++.+|
T Consensus 1 ~~vt~~~~~G~~~~~~~~~g~tll~a~~~~gi~~i~~~C~G~G~CgtC~v~v~~g~~~~l~~~~~~e~~~L~~~~~~~~g 80 (104)
T 3lxf_A 1 TAILVTTRDGTRTEIQAEPGLSLMEALRDAGIDELLALCGGCCSCATCHVLVAPAFADRLPALSGDENDLLDSSDHRTPH 80 (104)
T ss_dssp CEEEEECTTSCEEEEECCTTSBHHHHHHHTTCTTCCCTTCSSSSCSTTEEEECGGGGGGSCCCCHHHHHHHHTSTTCCTT
T ss_pred CEEEEEeCCCCEEEEEECCCChHHHHHHHcCCCCCCcCCCCCCCCCCCEEEECCcccccCCCCCHHHHHHhccccccCCC
Confidence 369999999999999999999999999999999 9999999999999999999999888999999999999754789999
Q ss_pred cEEeeeeEEecCCCceEEEecCc
Q psy1437 196 SRLGCQIILTKELEGIEVTLPKA 218 (232)
Q Consensus 196 ~RLaCQ~~~~~dl~g~~V~lp~~ 218 (232)
||||||+++.+||+|++|++|+.
T Consensus 81 ~rLaCq~~~~~dl~gl~v~ip~~ 103 (104)
T 3lxf_A 81 SRLSCQITINDKLEGLEVEIAPE 103 (104)
T ss_dssp EEEGGGCBCCGGGTTCEEEECCC
T ss_pred cEEEeeCEEccCCCCEEEEecCC
Confidence 99999999999999999999975
No 6
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=99.95 E-value=1.7e-27 Score=180.69 Aligned_cols=102 Identities=39% Similarity=0.690 Sum_probs=93.5
Q ss_pred EEEEEeCCCCEEEEEecCCchHHHHHHHCCCC-ccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCC-CCC
Q psy1437 118 NITFIDKDGKRREIKGKVGDNVLYLAHRYEIP-MEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFL-KDN 195 (232)
Q Consensus 118 ~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~-l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~-~~g 195 (232)
+|+|+.++|..++|.+.+|+|||++|+++||+ +++.|+|.|.||||+|+|.+|+++.++++++.|.++|+...++ .+|
T Consensus 2 ~V~~~~~~g~~~~~~~~~g~tlLeaa~~~gi~~i~~~C~g~G~CgtC~v~v~~g~~~~l~~~~~~e~~~L~~~~~~~~~g 81 (106)
T 1xlq_A 2 KVVYVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVPAANEREIGMLESVTAELKPN 81 (106)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHHHHTTCTTSCCTTCSSSSSCTTEEEECTTTGGGSCCCCHHHHHHHTTCSSCCCTT
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCCCcCCCCCcccCcCEEEECCcccccCCCCCHHHHHHhhcccccCCCC
Confidence 68887789977789999999999999999999 9999998999999999999998888999999999999854447 999
Q ss_pred cEEeeeeEEecCCCceEEEecCcc
Q psy1437 196 SRLGCQIILTKELEGIEVTLPKAT 219 (232)
Q Consensus 196 ~RLaCQ~~~~~dl~g~~V~lp~~~ 219 (232)
+||+||+++.+||+|++|++|+..
T Consensus 82 ~rLaCq~~~~~d~~~l~v~~p~~~ 105 (106)
T 1xlq_A 82 SRLCCQIIMTPELDGIVVDVPDRQ 105 (106)
T ss_dssp EEEGGGCBCCGGGTTEEEECCSCC
T ss_pred cEeeeeeEeecCCCCEEEEecCcc
Confidence 999999999999999999999753
No 7
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=99.95 E-value=8.8e-28 Score=182.20 Aligned_cols=103 Identities=38% Similarity=0.692 Sum_probs=94.1
Q ss_pred eEEEEEeCCCCEEEEEecCCchHHHHHHHCCCC-ccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCC-C
Q psy1437 117 VNITFIDKDGKRREIKGKVGDNVLYLAHRYEIP-MEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLK-D 194 (232)
Q Consensus 117 v~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~-l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~-~ 194 (232)
++|+|+.++|..++|.+.+|+|||++|+++||+ +++.|+|.|.||||+|+|.+|+++.++++++.|.++|+...++. +
T Consensus 1 ~~v~~~~~~g~~~~~~~~~g~tlL~aa~~~gi~~i~~~C~g~G~CgtC~v~v~~g~~~~l~~~~~~e~~~L~~~~~~~~~ 80 (106)
T 1uwm_A 1 AKIIFIEHNGTRHEVEAKPGLTVMEAARDNGVPGIDADCGGACACSTCHAYVDPAWVDKLPKALPTETDMIDFAYEPNPA 80 (106)
T ss_dssp CEEEEECTTCCEEEEECCTTSBHHHHHHTTTCTTCCCTTSSSSSSCTTEEEECHHHHTTSCCCCHHHHHHHTTSSSCCTT
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCcccCCCCCCCcCcCEEEECCcccccCCCCCHHHHHHhcCccccCCC
Confidence 468887799977789999999999999999999 99999989999999999999988889999999999998544788 9
Q ss_pred CcEEeeeeEEecCCCceEEEecCcc
Q psy1437 195 NSRLGCQIILTKELEGIEVTLPKAT 219 (232)
Q Consensus 195 g~RLaCQ~~~~~dl~g~~V~lp~~~ 219 (232)
|+||+||+++.+||+|++|++|+..
T Consensus 81 g~rLaCq~~~~~d~~~l~v~~p~~~ 105 (106)
T 1uwm_A 81 TSRLTCQIKVTSLLDGLVVHLPEKQ 105 (106)
T ss_dssp TEEEGGGCBCCGGGTTEEEECCSCC
T ss_pred CcEecccCEEccCCCCEEEEecCCC
Confidence 9999999999999999999998653
No 8
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=99.94 E-value=2.7e-27 Score=178.61 Aligned_cols=102 Identities=48% Similarity=0.863 Sum_probs=94.1
Q ss_pred ceeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCC
Q psy1437 115 EIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKD 194 (232)
Q Consensus 115 ~mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~ 194 (232)
++++|+|.+++|..++|.+.+|+|||++|+++||++++.|+|.|.||+|+|+|.+|+++.++++++.|.++|+...++.+
T Consensus 2 ~~~~v~~~~~~g~~~~~~~~~g~tlL~a~~~~gi~i~~~C~g~G~Cg~C~v~v~~g~~~~~~~~~~~E~~~L~~~~~~~~ 81 (103)
T 2wlb_A 2 TGIKVFFVTPEGREIMIEGNEGDSILDLAHANNIDLEGACEGSVACSTCHVIVDPEHYELLDPPEEDEEDMLDLAFGLEE 81 (103)
T ss_dssp CCEEEEEECTTCCEEEEEECTTCBHHHHHHHTTCCCCCTTTTSSCCSTTEEEECHHHHHHSCCCCHHHHHHHTTBTTCCT
T ss_pred CceEEEEEeCCCCEEEEEECCCCHHHHHHHHcCCCcCcCCCCCCCcCCCEEEECCCchhccCCCCHHHHHHHhcccCCCC
Confidence 35789998789987889999999999999999999999999899999999999999888788899999999985467899
Q ss_pred CcEEeeeeEEecCCCceEEEec
Q psy1437 195 NSRLGCQIILTKELEGIEVTLP 216 (232)
Q Consensus 195 g~RLaCQ~~~~~dl~g~~V~lp 216 (232)
|+||+||+++.+||+|++|++|
T Consensus 82 g~rLaCq~~~~~d~~~l~v~lp 103 (103)
T 2wlb_A 82 TSRLGCQVLLRKDLDGIRVRIP 103 (103)
T ss_dssp TEEEGGGCBCCGGGTTEEEECC
T ss_pred CcEeeEeeEeCCCCCcEEEEcC
Confidence 9999999999999999999987
No 9
>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR {Pseudomonas SP} SCOP: d.15.4.1
Probab=99.94 E-value=6.6e-28 Score=182.61 Aligned_cols=102 Identities=23% Similarity=0.561 Sum_probs=92.8
Q ss_pred eEEEEEeCCCCEEEEEecCCchHHHHHHHCCCC-ccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcC-CcCCCCC
Q psy1437 117 VNITFIDKDGKRREIKGKVGDNVLYLAHRYEIP-MEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLD-LAPFLKD 194 (232)
Q Consensus 117 v~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~-l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~-~~~~~~~ 194 (232)
++|+|+.++|..++|++.+|+|||++|+++||+ +++.|+|.|.||||+|+|.+|+++.++++++.|.++|+ ...++.+
T Consensus 1 ~~V~~~~~~g~~~~~~~~~g~tlL~aa~~~gi~~i~~~C~g~G~CgtC~v~v~~G~~~~l~~~~~~e~~~L~~~~~~~~~ 80 (105)
T 1b9r_A 1 PRVVFIDEQSGEYAVDAQDGQSLMEVATQNGVPGIVAECGGSCVCATCRIEIEDAWVEIVGEANPDENDLLQSTGEPMTA 80 (105)
T ss_dssp CEEEECCTTTSCEEEECCTTCCTTHHHHHHTCCCCCCSSTTSSCCCCCCCEECTTTHHHHTCCCTTHHHHHHTSCCCCCT
T ss_pred CEEEEEeCCCCEEEEEECCCChHHHHHHHcCCCCcCcCCCCCCCcCcCEEEECCcccccCCCCCHHHHHHhhcccccCCC
Confidence 468887789977789999999999999999999 99999999999999999999988888889999999997 3467899
Q ss_pred CcEEeeeeEEecCCCceEEEecCc
Q psy1437 195 NSRLGCQIILTKELEGIEVTLPKA 218 (232)
Q Consensus 195 g~RLaCQ~~~~~dl~g~~V~lp~~ 218 (232)
|+|||||+++.+|+++++|++|+.
T Consensus 81 g~rLaCq~~~~~~~~~l~v~~p~~ 104 (105)
T 1b9r_A 81 GTRLSCQVFIDPSMDGLIVRVPLP 104 (105)
T ss_dssp TBSCGGGCCCCTTSTTEEEECCSC
T ss_pred CcEeeeeCEecCCCCcEEEEecCC
Confidence 999999999999999999999863
No 10
>3ah7_A [2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur cluster biosynthes pseudomonas, metal binding protein; 1.90A {Pseudomonas putida}
Probab=99.94 E-value=1.3e-26 Score=177.78 Aligned_cols=108 Identities=37% Similarity=0.632 Sum_probs=94.5
Q ss_pred eeEEEEEeCCC---CEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCC
Q psy1437 116 IVNITFIDKDG---KRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFL 192 (232)
Q Consensus 116 mv~Vt~~~~~G---~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~ 192 (232)
|++|||++++| ..++|.+.+|+|||++|+++||++++.|+|.|.||+|+|+|.+|+ ..++++++.|..+|+...++
T Consensus 1 M~~vt~~~~~g~~~~~~~v~~~~g~tlL~aa~~~Gi~i~~~C~g~G~CgtC~v~v~~G~-~~~~~~~~~e~~~L~~~~~~ 79 (113)
T 3ah7_A 1 MPLVTFLPHEKFCPEGLTVEVKPGTNILELAHDHHIEMESACGGVKACTTCHCIVRKGF-DSLEEADELEEDMLDKAWGL 79 (113)
T ss_dssp CCEEEECCBTTTBTTCEEEECCTTCBHHHHHHHTTCCCCCTTCSSSSCSTTEEEEEESG-GGSCCCCHHHHHHHTTSTTC
T ss_pred CCEEEEEcCCCcCCCCeEEEECCCCcHHHHHHHcCCCCCcCCCCCCCcCCCEEEEcCCc-ccCCCCCHHHHHhhhccccc
Confidence 78899987766 446799999999999999999999999998999999999999996 66888899999999754478
Q ss_pred CCCcEEeeeeEEe-cCCCceEEEecCcccccccCCC
Q psy1437 193 KDNSRLGCQIILT-KELEGIEVTLPKATRNFYVDGH 227 (232)
Q Consensus 193 ~~g~RLaCQ~~~~-~dl~g~~V~lp~~~~~~~~~~~ 227 (232)
.+|+|||||+++. +| ++|++|..+.|...+|+
T Consensus 80 ~~g~rLaCq~~~~~~d---l~v~~~~~~~~~~~~~~ 112 (113)
T 3ah7_A 80 EAQSRLGCQVFVADED---LTIEIPKYSLNHAAEAP 112 (113)
T ss_dssp CTTEEEGGGCBCCSSC---EEEECCSCCCCCCC---
T ss_pred CCCcEEeeeCEEeCCC---EEEEECchhhhhhhccC
Confidence 9999999999998 55 99999999999999884
No 11
>1i7h_A Ferredoxin; 2Fe-2S,electron transport; 1.70A {Escherichia coli} SCOP: d.15.4.1
Probab=99.90 E-value=5.2e-24 Score=162.79 Aligned_cols=105 Identities=37% Similarity=0.599 Sum_probs=90.0
Q ss_pred eeEEEEEeCCC---CEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCC
Q psy1437 116 IVNITFIDKDG---KRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFL 192 (232)
Q Consensus 116 mv~Vt~~~~~G---~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~ 192 (232)
|++|+|+.++| ..++|.+.+|+|||++|+++|+++++.|+|.|.||+|+|+|.+|+ ..++++++.|..+|+...++
T Consensus 1 M~~i~~~~~~g~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~~~G~Cg~C~v~v~~G~-~~~~~~~~~e~~~L~~~~~~ 79 (111)
T 1i7h_A 1 MPKIVILPHQDLCPDGAVLEANSGETILDAALRNGIEIEHACEKSCACTTCHCIVREGF-DSLPESSEQEDDMLDKAWGL 79 (111)
T ss_dssp -CEEEECCBTTTBTTCEEEECCTTCBHHHHHHHTTCCCCCTTSSSSCCSTTEEEEEECG-GGSCCCCHHHHHHHTTCTTC
T ss_pred CCEEEEEeCCCcCCCCeEEEeCCCCcHHHHHHHcCCCCcccCCCCCcCCCCEEEEccCc-ccCCCCCHHHHHHhhhcccc
Confidence 67899986554 345799999999999999999999999988899999999999996 45777888898899754478
Q ss_pred CCCcEEeeeeEEe-cCCCceEEEecCccccccc
Q psy1437 193 KDNSRLGCQIILT-KELEGIEVTLPKATRNFYV 224 (232)
Q Consensus 193 ~~g~RLaCQ~~~~-~dl~g~~V~lp~~~~~~~~ 224 (232)
.+|+||+||+++. +| ++|++|+.++|+..
T Consensus 80 ~~g~rLaCq~~~~~~d---l~v~~~~~~~~~~~ 109 (111)
T 1i7h_A 80 EPESRLSCQARVTDED---LVVEIPRYTINHAR 109 (111)
T ss_dssp CTTEEETTTCBCCSSC---EEEECCSCCCCTTC
T ss_pred CCCcEEEEEEEEeCCC---EEEEEChHHhhhhc
Confidence 8999999999996 65 99999998888754
No 12
>1l5p_A Ferredoxin; [2Fe-2S] cluster, electron transfer, iron-sulfur protein, metalloprotein, oxidoreductase; 2.20A {Trichomonas vaginalis} SCOP: d.15.4.1
Probab=99.90 E-value=7.4e-24 Score=157.14 Aligned_cols=91 Identities=24% Similarity=0.407 Sum_probs=82.4
Q ss_pred EEEEEeCCCCEEEEEecCCchHHHHHHHCCCC-ccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCCc
Q psy1437 118 NITFIDKDGKRREIKGKVGDNVLYLAHRYEIP-MEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNS 196 (232)
Q Consensus 118 ~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~-l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g~ 196 (232)
+|+| .++|..++|++.+|+|||++|+++|++ +++.|+|.|.||+|+|+|.+|. ++++++.|..+|+ ++.+|+
T Consensus 2 ~v~i-~~~g~~~~~~~~~g~tll~a~~~~gi~gi~~~C~G~G~Cg~C~v~v~~g~---~~~~~~~e~~~L~---~~~~g~ 74 (93)
T 1l5p_A 2 TITA-VKGGVKKQLKFEDDQTLFTVLTEAGLMSADDTCQGNKACGKCICKHVSGK---VAAAEDDEKEFLE---DQPANA 74 (93)
T ss_dssp EEEE-EETTEEEEEECCTTEEHHHHHHTTTSSCCTTSCSSSSSSCCCEEEEEESC---CCCCCHHHHHHHT---TSCTTE
T ss_pred eEEE-EeCCcEEEEEECCCChHHHHHHHcCCCcCCcCCCCcCCcCCCEEEECCCc---CCCCCHHHHHHhc---CCCCCc
Confidence 4664 478987889999999999999999999 9999999999999999999875 5677888988996 789999
Q ss_pred EEeeeeEEecCCCceEEEe
Q psy1437 197 RLGCQIILTKELEGIEVTL 215 (232)
Q Consensus 197 RLaCQ~~~~~dl~g~~V~l 215 (232)
|||||+++.+|++|++|+|
T Consensus 75 rLaCq~~~~~d~~g~~v~~ 93 (93)
T 1l5p_A 75 RLACAITLSGENDGAVFEL 93 (93)
T ss_dssp EEGGGCEECGGGTTCEEEC
T ss_pred EEeeECEECCCCCceEEEC
Confidence 9999999999999999985
No 13
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=99.87 E-value=1.2e-21 Score=145.54 Aligned_cols=81 Identities=20% Similarity=0.222 Sum_probs=77.3
Q ss_pred CchHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy1437 2 GLPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA-NSSSDENVAAWRQKAQQYLNRAEVLKDKIQVMFLRNLLC 80 (232)
Q Consensus 2 ~~~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~-~e~~~~~~~~~~~k~~eY~~RaE~lk~~~~~~~~~~~~s 80 (232)
+|+++|++++++||++|++|+|++|+.+|++||++|+.++ +++++..++.|++|+.+|++|||+||.+++..++.|++|
T Consensus 10 ~~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~alk~e~~~~~k~~l~~K~~eYl~RAE~LK~~l~~~~~~g~~~ 89 (93)
T 1wfd_A 10 SDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYMDRAENIKKYLDQEKEDGKSG 89 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC
Confidence 5789999999999999999999999999999999999999 689999999999999999999999999999999999998
Q ss_pred CC
Q psy1437 81 KL 82 (232)
Q Consensus 81 ~~ 82 (232)
.+
T Consensus 90 ~~ 91 (93)
T 1wfd_A 90 PS 91 (93)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 14
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=99.84 E-value=1.7e-21 Score=141.70 Aligned_cols=69 Identities=32% Similarity=0.295 Sum_probs=65.5
Q ss_pred CchHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 2 GLPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA-NSSSDENVAAWRQKAQQYLNRAEVLKDKI 70 (232)
Q Consensus 2 ~~~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~-~e~~~~~~~~~~~k~~eY~~RaE~lk~~~ 70 (232)
+++++|++++++||++|++|+|++|+.+|++||++|+.++ +++|+..++.||+|+.||++|||+||++|
T Consensus 14 ~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~alk~e~d~~~k~~ir~K~~eY~~RAE~LK~~l 83 (83)
T 2w2u_A 14 MLEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQLVSLYRDGSTAAIYEQMINEYKRRIEVLKELI 83 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSTTSSTHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4789999999999999999999999999999999999999 68999999999999999999999999853
No 15
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=99.83 E-value=3.5e-21 Score=140.14 Aligned_cols=68 Identities=26% Similarity=0.287 Sum_probs=66.0
Q ss_pred chHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 3 LPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA-NSSSDENVAAWRQKAQQYLNRAEVLKDKI 70 (232)
Q Consensus 3 ~~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~-~e~~~~~~~~~~~k~~eY~~RaE~lk~~~ 70 (232)
++++|++++++||++|++|+|++|+.+|++||++|++++ +++|+..++.||+|+.+|++|||+||+++
T Consensus 7 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~~lk~e~d~~~k~~ir~K~~eY~~RAE~Lk~~l 75 (83)
T 2v6y_A 7 LEDMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQIIVLYPESVARTAYEQMINEYKKRISYLEKVL 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 789999999999999999999999999999999999999 68999999999999999999999999987
No 16
>1a70_A Ferredoxin; iron-sulfur protein, photosynthesis, electron transport; 1.70A {Spinacia oleracea} SCOP: d.15.4.1 PDB: 1pfd_A
Probab=99.83 E-value=4.7e-21 Score=142.96 Aligned_cols=94 Identities=17% Similarity=0.298 Sum_probs=78.2
Q ss_pred eEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCCc
Q psy1437 117 VNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNS 196 (232)
Q Consensus 117 v~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g~ 196 (232)
.+|+|..++| .++|.+.+|+|||++|+++|+++++.|+ .|.||+|+|+|.+|.+. ..|...|+ ..++.+|+
T Consensus 3 ~~v~~~~~~~-~~~~~~~~g~tlL~a~~~~gi~i~~~C~-~G~Cg~C~v~v~~G~~~------~~e~~~L~-~~e~~~g~ 73 (97)
T 1a70_A 3 YKVTLVTPTG-NVEFQCPDDVYILDAAEEEGIDLPYSCR-AGSCSSCAGKLKTGSLN------QDDQSFLD-DDQIDEGW 73 (97)
T ss_dssp EEEEEEETTE-EEEEEEETTSCHHHHHHHTTCCCCCSSS-SSCSSTTEEEEEESCEE------CTTCCSSC-HHHHHHTE
T ss_pred EEEEEEeCCc-eEEEEeCCCCcHHHHHHHcCCCcccCCC-CcCCCCCeEEEccCCcC------ccccccCC-HHHhhCCe
Confidence 5788865666 4679999999999999999999999998 89999999999999643 23445665 34567899
Q ss_pred EEeeeeEEecCCCceEEEecCccccc
Q psy1437 197 RLGCQIILTKELEGIEVTLPKATRNF 222 (232)
Q Consensus 197 RLaCQ~~~~~dl~g~~V~lp~~~~~~ 222 (232)
||+||+++.+| ++|++|+.++.+
T Consensus 74 ~LaCq~~~~~d---~~v~~~~~~~~~ 96 (97)
T 1a70_A 74 VLTCAAYPVSD---VTIETHKKEELT 96 (97)
T ss_dssp EEGGGCEESSC---EEEECCCGGGCC
T ss_pred EEEeECEECCC---EEEEeCchhhcc
Confidence 99999999998 999999876643
No 17
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=99.82 E-value=5.9e-21 Score=141.46 Aligned_cols=93 Identities=19% Similarity=0.285 Sum_probs=77.0
Q ss_pred eeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCC
Q psy1437 116 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDN 195 (232)
Q Consensus 116 mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g 195 (232)
+.+|+|..++| .++|++.+|+|||++|+++||++++.|+ .|.||+|+|+|.+|.+. ..|...|+ ..++.+|
T Consensus 1 ~~~v~~~~~~g-~~~~~~~~g~tlL~a~~~~gi~i~~~C~-~G~Cg~C~v~v~~G~~~------~~~~~~L~-~~~~~~g 71 (95)
T 1frr_A 1 AYKTVLKTPSG-EFTLDVPEGTTILDAAEEAGYDLPFSCR-AGACSSCLGKVVSGSVD------ESEGSFLD-DGQMEEG 71 (95)
T ss_dssp CEEEEEEETTE-EEEEEECTTCCHHHHHHHTTCCCCCSSS-SSSSSTTEEEEEESCEE------CTTCCSCC-HHHHHTT
T ss_pred CeEEEEEeCCC-cEEEEeCCCCcHHHHHHHcCCCCCCCCC-CcCCCCCEEEEEeCCcc------ccccccCC-HHHHhCC
Confidence 36788866888 5679999999999999999999999998 79999999999999643 22345665 3456789
Q ss_pred cEEeeeeEEecCCCceEEEecCccc
Q psy1437 196 SRLGCQIILTKELEGIEVTLPKATR 220 (232)
Q Consensus 196 ~RLaCQ~~~~~dl~g~~V~lp~~~~ 220 (232)
+||+||+++.+| ++|++|+..+
T Consensus 72 ~~LaC~~~~~~~---~~v~~~~~~~ 93 (95)
T 1frr_A 72 FVLTCIAIPESD---LVIETHKEEE 93 (95)
T ss_dssp EEETTTCEESSC---EEEECCCTTT
T ss_pred cEEeeECEECCC---EEEEEcchhh
Confidence 999999999987 9999987543
No 18
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=99.82 E-value=1.2e-21 Score=146.29 Aligned_cols=95 Identities=20% Similarity=0.334 Sum_probs=79.8
Q ss_pred ceeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCC
Q psy1437 115 EIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKD 194 (232)
Q Consensus 115 ~mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~ 194 (232)
.|++|+|.+++|..++|.+.+|+|||++|+++|+++++.| |.|.||+|+|+|.+|.+.. .+.|...|+ ..++.+
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C-~~G~Cg~C~v~v~~G~~~~----~~~e~~~L~-~~~~~~ 76 (98)
T 1jq4_A 3 RVHTITAVTEDGESLRFECRSDEDVITAALRQNIFLMSSC-REGGCATCKALCSEGDYDL----KGCSVQALP-PEEEEE 76 (98)
T ss_dssp CEEEEEEEETTTEEEEEEEESCCTHHHHHHHHTCCCCCSC-CSSCCCCCCBCEEECCCCC----CCSCTTTSC-HHHHHH
T ss_pred CcEEEEEEecCCCcEEEEeCCCChHHHHHHHcCCCCcCCC-CCCCCCCCEEEEEcCcccc----CcccccccC-HHHhcC
Confidence 3789999877776678999999999999999999999999 5899999999999996432 233456675 356778
Q ss_pred CcEEeeeeEEecCCCceEEEecCc
Q psy1437 195 NSRLGCQIILTKELEGIEVTLPKA 218 (232)
Q Consensus 195 g~RLaCQ~~~~~dl~g~~V~lp~~ 218 (232)
|+||+||+++.+| ++|++|+.
T Consensus 77 g~~LaCq~~~~~d---~~v~~~~~ 97 (98)
T 1jq4_A 77 GLVLLCRTYPKTD---LEIELPYT 97 (98)
T ss_dssp HCBCTTTCCSSCC---SEEECSCC
T ss_pred CcEEEeeCEECCC---EEEEecCC
Confidence 9999999999998 99999864
No 19
>1czp_A Ferredoxin I; [2Fe-2S] protein, crystal reduced with dithionite, electron; 1.17A {Nostoc SP} SCOP: d.15.4.1 PDB: 1ewy_C* 1fxa_A 1qt9_A 1qog_A 1j7c_A 1j7b_A 1qof_A 1qob_A 1j7a_A 1qoa_A 1rfk_A 3p63_A 4fxc_A 3ab5_A 1roe_A 2cjn_A 2cjo_A 1off_A 1dox_A 1doy_A ...
Probab=99.82 E-value=8.6e-21 Score=141.70 Aligned_cols=93 Identities=19% Similarity=0.320 Sum_probs=77.4
Q ss_pred eEEEEEeCCCC-EEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCC
Q psy1437 117 VNITFIDKDGK-RREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDN 195 (232)
Q Consensus 117 v~Vt~~~~~G~-~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g 195 (232)
++|+|+.++|. .++|.+.+|+|||++|+++|+++++.|+ .|.||+|+|+|.+|++. ..|..+|+ ..++.+|
T Consensus 3 ~~V~~~~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~-~G~Cg~C~v~v~~G~~~------~~e~~~L~-~~e~~~g 74 (98)
T 1czp_A 3 FKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCR-AGACSTCAGKLVSGTVD------QSDQSFLD-DDQIEAG 74 (98)
T ss_dssp EEEEEEETTTTEEEEEEEETTSCHHHHHHHTTCCCCCSSS-SSSSSTTEEEEEESCEE------CTTCCSSC-HHHHHTT
T ss_pred eEEEEEeCCCCCcEEEEeCCCCCHHHHHHHcCCCccCCCC-CCCCCCCeEEEccCCcC------ccccccCC-HHHhhCC
Confidence 67898766653 4679999999999999999999999998 89999999999999643 22334665 3556789
Q ss_pred cEEeeeeEEecCCCceEEEecCccc
Q psy1437 196 SRLGCQIILTKELEGIEVTLPKATR 220 (232)
Q Consensus 196 ~RLaCQ~~~~~dl~g~~V~lp~~~~ 220 (232)
+||+||+++.+| ++|++|+.++
T Consensus 75 ~~LaCq~~~~~d---~~v~~~~~~~ 96 (98)
T 1czp_A 75 YVLTCVAYPTSD---VVIQTHKEED 96 (98)
T ss_dssp EEEGGGCEESSC---EEEECCCTTT
T ss_pred eEEeeeCEECCC---EEEEeccccc
Confidence 999999999998 9999997654
No 20
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1
Probab=99.82 E-value=6.4e-21 Score=141.37 Aligned_cols=91 Identities=18% Similarity=0.317 Sum_probs=76.2
Q ss_pred EEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCCcE
Q psy1437 118 NITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSR 197 (232)
Q Consensus 118 ~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g~R 197 (232)
+|+|+.++| .++|.+.+|+|||++|+++|+++++.|+ .|.||+|+|+|.+|... ..|..+|+ ..++.+|+|
T Consensus 2 ~v~~~~~~g-~~~~~~~~g~tlL~a~~~~gi~i~~~C~-~G~Cg~C~v~v~~G~~~------~~e~~~L~-~~e~~~g~~ 72 (94)
T 1awd_A 2 KVTLKTPSG-EETIECPEDTYILDAAEEAGLDLPYSCR-AGACSSCAGKVESGEVD------QSDQSFLD-DAQMGKGFV 72 (94)
T ss_dssp EEEEEETTE-EEEEECCTTSCHHHHHHHTTCCCCCSSS-SSSSSTTEEEEEESCEE------CTTCCSSC-HHHHHTTEE
T ss_pred EEEEEeCCC-cEEEEECCCCcHHHHHHHcCCCCCcCCC-CCcCCCCEEEEEeCCcC------ccccccCC-HHHHhCCcE
Confidence 577766777 4679999999999999999999999998 89999999999999643 23445665 355778999
Q ss_pred EeeeeEEecCCCceEEEecCccc
Q psy1437 198 LGCQIILTKELEGIEVTLPKATR 220 (232)
Q Consensus 198 LaCQ~~~~~dl~g~~V~lp~~~~ 220 (232)
|+||+++.+| ++|++|+.++
T Consensus 73 LaCq~~~~~d---~~i~~~~~~~ 92 (94)
T 1awd_A 73 LTCVAYPTSD---VTILTHQEAA 92 (94)
T ss_dssp EGGGCEESSC---EEEECCCGGG
T ss_pred EeeECEECCC---EEEEecchhc
Confidence 9999999987 9999997654
No 21
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=99.82 E-value=4.8e-20 Score=134.91 Aligned_cols=72 Identities=22% Similarity=0.310 Sum_probs=66.5
Q ss_pred hHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 4 PEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA-NSSSDENVAAWRQKAQQYLNRAEVLKDKIQVMFL 75 (232)
Q Consensus 4 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~-~e~~~~~~~~~~~k~~eY~~RaE~lk~~~~~~~~ 75 (232)
-.+|++++++||++|++|+|++|+.+|++||++|+.++ +++|+..|+.|++|+.+|++|||+||++|++.++
T Consensus 13 ~~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~alk~e~d~~~k~~lr~K~~eYl~RAE~LK~~l~~~k~ 85 (86)
T 4a5x_A 13 STAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKYMDRAENIKKYLDQEKE 85 (86)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 35799999999999999999999999999999999999 7899999999999999999999999999976653
No 22
>1wri_A Ferredoxin II, ferredoxin; electron transport; 1.20A {Equisetum arvense} SCOP: d.15.4.1
Probab=99.81 E-value=1.1e-20 Score=139.92 Aligned_cols=91 Identities=19% Similarity=0.345 Sum_probs=76.2
Q ss_pred eeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCC
Q psy1437 116 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDN 195 (232)
Q Consensus 116 mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g 195 (232)
|.+|+|..++| .++|.+.+|+|||++|+++| ++++.|+ .|.||+|+|+|.+|.+. ..|...|+ ..++.+|
T Consensus 1 ~~~V~~~~~~~-~~~~~~~~g~tlL~a~~~~g-~i~~~C~-~G~Cg~C~v~v~~G~~~------~~e~~~L~-~~~~~~g 70 (93)
T 1wri_A 1 AYKVTLKTPDG-DITFDVEPGERLIDIGSEKA-DLPLSCQ-AGACSTCLGKIVSGTVD------QSEGSFLD-DEQIEQG 70 (93)
T ss_dssp CEEEEEEETTE-EEEEEECTTSCHHHHHHHHS-CCCCSSS-SSSSSTTEEEEEESCEE------CTTCCSCC-HHHHHTT
T ss_pred CEEEEEEECCC-eEEEEECCCCcHHHHHHHCc-CCCCCCC-CCCCCCCEEEEecCccC------ccccccCC-HHHHhCC
Confidence 46788876766 56799999999999999999 9999998 89999999999999643 23445665 3567789
Q ss_pred cEEeeeeEEecCCCceEEEecCcc
Q psy1437 196 SRLGCQIILTKELEGIEVTLPKAT 219 (232)
Q Consensus 196 ~RLaCQ~~~~~dl~g~~V~lp~~~ 219 (232)
+||+||+++.+| ++|++|+..
T Consensus 71 ~~LaCq~~~~~d---~~v~~~~~~ 91 (93)
T 1wri_A 71 YVLTCIAIPESD---VVIETHKED 91 (93)
T ss_dssp EEETTTCEESSC---EEEECCCGG
T ss_pred cEEeeeCEECCC---EEEEecccc
Confidence 999999999998 999999754
No 23
>1iue_A Ferredoxin; electron transport, iron-sulfur; 1.70A {Plasmodium falciparum} SCOP: d.15.4.1
Probab=99.81 E-value=1.2e-20 Score=141.05 Aligned_cols=93 Identities=20% Similarity=0.353 Sum_probs=77.1
Q ss_pred eEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCCc
Q psy1437 117 VNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNS 196 (232)
Q Consensus 117 v~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g~ 196 (232)
.+|+|..++| .++|.+++|+|||++|+++|+++++.|+ .|.||+|+|+|.+|.+. ..|...|+ ..++.+|+
T Consensus 3 ~~v~~~~~~~-~~~~~~~~g~tlL~a~~~~gi~i~~~C~-~G~Cg~C~v~v~~G~~~------~~e~~~L~-~~e~~~g~ 73 (98)
T 1iue_A 3 YNITLRTNDG-EKKIECNEDEYILDASERQNVELPYSCR-GGSCSTCAAKLVEGEVD------NDDQSYLD-EEQIKKKY 73 (98)
T ss_dssp EEEEEEETTE-EEEEEEETTSCHHHHHHHTTCCCCCSSC-SSSSSTTEEEEEESCEE------CTTCCSSC-HHHHHTTE
T ss_pred EEEEEEeCCC-eEEEEeCCCCcHHHHHHHcCCCCCCCCC-CCcCCCCEEEEeeCCcc------ccccccCC-HHHHhCCe
Confidence 5688875665 5679999999999999999999999998 89999999999999643 23345665 35577899
Q ss_pred EEeeeeEEecCCCceEEEecCcccc
Q psy1437 197 RLGCQIILTKELEGIEVTLPKATRN 221 (232)
Q Consensus 197 RLaCQ~~~~~dl~g~~V~lp~~~~~ 221 (232)
||+||+++.+| ++|++|+..+.
T Consensus 74 ~LaCq~~~~~d---~~i~~~~~~~~ 95 (98)
T 1iue_A 74 ILLCTCYPKSD---CVIETHKEDEL 95 (98)
T ss_dssp EEGGGCEESSC---EEEECCCHHHH
T ss_pred EEEeECEECCC---eEEEeCChHhh
Confidence 99999999998 99999986553
No 24
>1frd_A Heterocyst [2Fe-2S] ferredoxin; electron transport; 1.70A {Nostoc SP} SCOP: d.15.4.1
Probab=99.81 E-value=3.1e-20 Score=138.48 Aligned_cols=93 Identities=17% Similarity=0.221 Sum_probs=76.3
Q ss_pred eEEEEEeCCC-CEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCC
Q psy1437 117 VNITFIDKDG-KRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDN 195 (232)
Q Consensus 117 v~Vt~~~~~G-~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g 195 (232)
.+|+|..+++ ..++|.+.+|+|||++|+++||++++.|+ .|.||+|+|+|.+|.+. ..|..+|+ ..++.+|
T Consensus 3 ~~V~~~~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~-~G~Cg~C~v~v~~G~~~------~~e~~~L~-~~e~~~g 74 (98)
T 1frd_A 3 YQVRLINKKQDIDTTIEIDEETTILDGAEENGIELPFSCH-SGSCSSCVGKVVEGEVD------QSDQIFLD-DEQMGKG 74 (98)
T ss_dssp EEEEEEETTTTEEEEEEEETTSCHHHHHHHTTCCCCCSSS-SSSSSTTEEEEEESCEE------CTTCCSCC-HHHHHTT
T ss_pred eEEEEEeCCCCCCEEEEeCCCCcHHHHHHHcCCCcccCCC-CCCCCCCEEEEEeCCcc------ccccccCC-HHHhhCC
Confidence 6788875554 14579999999999999999999999998 89999999999999643 23345665 3456789
Q ss_pred cEEeeeeEEecCCCceEEEecCccc
Q psy1437 196 SRLGCQIILTKELEGIEVTLPKATR 220 (232)
Q Consensus 196 ~RLaCQ~~~~~dl~g~~V~lp~~~~ 220 (232)
+||+||+++.+| ++|++|...+
T Consensus 75 ~~LaC~~~~~~d---~~v~~~~~~~ 96 (98)
T 1frd_A 75 FALLCVTYPRSN---CTIKTHQEPY 96 (98)
T ss_dssp EEEGGGCEESSS---EEEECCCGGG
T ss_pred cEEEeECEECCC---EEEEecchhh
Confidence 999999999998 9999987543
No 25
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=99.81 E-value=2e-19 Score=131.31 Aligned_cols=74 Identities=26% Similarity=0.267 Sum_probs=69.8
Q ss_pred CchHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 2 GLPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA-NSSSDENVAAWRQKAQQYLNRAEVLKDKIQVMFL 75 (232)
Q Consensus 2 ~~~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~-~e~~~~~~~~~~~k~~eY~~RaE~lk~~~~~~~~ 75 (232)
+++++|+.++++||++|++|+|++|+.+|.+|+++|+.++ +++++..++.|++|+.+|++|||+||.++++.+.
T Consensus 8 ~~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~a~k~e~~~~~k~~l~~k~~eYl~RAE~Lk~~l~~~~~ 82 (85)
T 2v6x_A 8 DFLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLALKYEKNPKSKDLIRAKFTEYLNRAEQLKKHLESEEA 82 (85)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3789999999999999999999999999999999999999 6889999999999999999999999999977654
No 26
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=99.77 E-value=1.2e-18 Score=134.30 Aligned_cols=73 Identities=27% Similarity=0.331 Sum_probs=68.1
Q ss_pred CchHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh-cc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 2 GLPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA-NS-SSDENVAAWRQKAQQYLNRAEVLKDKIQVMF 74 (232)
Q Consensus 2 ~~~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~-~e-~~~~~~~~~~~k~~eY~~RaE~lk~~~~~~~ 74 (232)
+++++|+.++++||++|++|+|++||.+|.+|+++|+.++ ++ .++..++.|++|+.+|++|||+||.+|+...
T Consensus 13 ~~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~alk~e~~~~~~k~~lr~K~~eYl~RAE~LK~~l~~~~ 87 (117)
T 2cpt_A 13 PNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLKNKE 87 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3789999999999999999999999999999999999999 67 6788899999999999999999999997554
No 27
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.74 E-value=1.2e-18 Score=155.45 Aligned_cols=96 Identities=21% Similarity=0.289 Sum_probs=82.0
Q ss_pred eeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCC
Q psy1437 116 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDN 195 (232)
Q Consensus 116 mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g 195 (232)
|++|+|..++|..++|++.+|+|||++|+++||++++.|+ .|.||+|+|+|.+|++.. + +.+.|...|+ ..++.+|
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~g~tll~a~~~~gi~i~~~C~-~g~Cg~C~v~v~~G~~~~-~-~~~~~~~~l~-~~~~~~g 78 (338)
T 1krh_A 3 NHQVALQFEDGVTRFICIAQGETLSDAAYRQQINIPMDCR-EGECGTCRAFCESGNYDM-P-EDNYIEDALT-PEEAQQG 78 (338)
T ss_dssp CEEEEEECTTSCEEEEEECTTCCHHHHHHHTTCCCSCSCS-SSSSCTTEEEEEECCEEC-C-GGGSCTTTCC-HHHHHHT
T ss_pred ceEEEEEEcCCCcEEEEeCCCCcHHHHHHHcCCCcccCCC-CcCCCCCEEEEecCcEec-c-cCccccccCC-HHHHhCC
Confidence 6889988777777889999999999999999999999998 899999999999997542 2 1345667776 4578899
Q ss_pred cEEeeeeEEecCCCceEEEecCc
Q psy1437 196 SRLGCQIILTKELEGIEVTLPKA 218 (232)
Q Consensus 196 ~RLaCQ~~~~~dl~g~~V~lp~~ 218 (232)
+||+||+.+.+| ++|++|..
T Consensus 79 ~~LaCq~~~~~~---~~v~~~~~ 98 (338)
T 1krh_A 79 YVLACQCRPTSD---AVFQIQAS 98 (338)
T ss_dssp EEETTTCEESSS---EEEEESSC
T ss_pred eEEEEeCEECCC---eEEEEecc
Confidence 999999999998 99999875
No 28
>1doi_A 2Fe-2S ferredoxin; halophilic protein, redox protein, iron-sulfur, electron transport; 1.90A {Haloarcula marismortui} SCOP: d.15.4.1 PDB: 1e0z_A* 1e10_A
Probab=99.73 E-value=1.4e-19 Score=141.87 Aligned_cols=95 Identities=17% Similarity=0.254 Sum_probs=75.9
Q ss_pred CCceeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCC
Q psy1437 113 EDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFL 192 (232)
Q Consensus 113 ~~~mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~ 192 (232)
+.+|.+|+| .++|. ++|.+.+|+|||++|+++|+++++.|+ .|.||+|+|+|.+|.++. .|...|+..+..
T Consensus 24 f~~m~~i~i-~~~g~-~~v~v~~g~tlL~aa~~~Gi~i~~~C~-~G~CgtC~v~v~~G~v~~------~e~~~L~~~e~~ 94 (128)
T 1doi_A 24 FGEASDMDL-DDEDY-GSLEVNEGEYILEAAEAQGYDWPFSCR-AGACANCAAIVLEGDIDM------DMQQILSDEEVE 94 (128)
T ss_dssp HHHHHHSCC-CTTTE-EEEECCTTSCHHHHHHHTTCCCCCSSS-SSSSSTTEEEEEESCEEE------CCCSSSCHHHHH
T ss_pred cccccEEEE-EeCCc-EEEEECCCCcHHHHHHHcCCCCccCCC-ccCCCCCEeEEecCCcCc------hhhccCCHhHhc
Confidence 456888887 57885 269999999999999999999999995 799999999999997432 233456522236
Q ss_pred CCCcEEeeeeEEecCCCceEEEecCc
Q psy1437 193 KDNSRLGCQIILTKELEGIEVTLPKA 218 (232)
Q Consensus 193 ~~g~RLaCQ~~~~~dl~g~~V~lp~~ 218 (232)
.+|+||+||+++.+| .++|++...
T Consensus 95 ~~g~rLaCq~~~~~d--~i~i~~~~~ 118 (128)
T 1doi_A 95 DKNVRLTCIGSPDAD--EVKIVYNAK 118 (128)
T ss_dssp TSCEEEGGGEEECSS--EEEEEECGG
T ss_pred cCCEEEEEEeEEcCC--eEEEEecCC
Confidence 799999999999987 688876544
No 29
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=99.73 E-value=2e-19 Score=155.20 Aligned_cols=83 Identities=20% Similarity=0.256 Sum_probs=4.8
Q ss_pred chHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q psy1437 3 LPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA-NSSSDENVAAWRQKAQQYLNRAEVLKDKIQVMFLRNLLCK 81 (232)
Q Consensus 3 ~~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~-~e~~~~~~~~~~~k~~eY~~RaE~lk~~~~~~~~~~~~s~ 81 (232)
....|++++++||++|++|+|++|+.+|++||++|+.++ +++|+..|+.|++|+++||+|||+||++|+++++++++++
T Consensus 19 ~~~~Ai~lv~~AVe~D~~g~y~eAl~lY~eaIe~Ll~alk~e~d~~~k~~lr~Ki~eYl~RAE~LK~~L~k~k~~g~~~~ 98 (257)
T 2ymb_A 19 QSTAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKYMDRAENIKKYLDQEKEDGKYHK 98 (257)
T ss_dssp ------------------------------------------------------------------------------CC
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCceEE
Confidence 467899999999999999999999999999999999999 6899999999999999999999999999999999999999
Q ss_pred CCcc
Q psy1437 82 LPPV 85 (232)
Q Consensus 82 ~~~~ 85 (232)
++.|
T Consensus 99 ~i~I 102 (257)
T 2ymb_A 99 QIKI 102 (257)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
No 30
>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans}
Probab=99.71 E-value=3.3e-18 Score=164.19 Aligned_cols=92 Identities=17% Similarity=0.248 Sum_probs=79.8
Q ss_pred eeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCC
Q psy1437 116 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDN 195 (232)
Q Consensus 116 mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g 195 (232)
|++|+|. ++|++ |++.+|+|||++++++|+++++.|+|.|.||||+|+|.+|+++ ..|...|+ ..++.+|
T Consensus 3 m~~V~~~-~sg~~--v~v~~G~tLLeAa~~aGi~ip~~C~G~G~CGtC~v~V~~G~v~------~~e~~~Ls-~~e~~~G 72 (631)
T 3zyy_X 3 EYKVLFK-PDQKE--VAISENTNLMEALNLAGINIKTVCGGAGTCGKCLVRVVDGQKR------VESYGKLK-QEEIAQG 72 (631)
T ss_dssp CEEEEEE-TTTEE--EEECTTSCHHHHHHHHTCCCCCSCCCSSCCSTTEEEEEESCEE------ESCCTTCC-HHHHHTT
T ss_pred ceEEEEe-cCCeE--EEECCCCcHHHHHHHcCCCCCcCCCCCCcCCCCEEEEeeCccc------ccccccCC-HHHhcCC
Confidence 7899986 88855 9999999999999999999999999999999999999999753 22335665 3567889
Q ss_pred cEEeeeeEEecCCCceEEEecCccc
Q psy1437 196 SRLGCQIILTKELEGIEVTLPKATR 220 (232)
Q Consensus 196 ~RLaCQ~~~~~dl~g~~V~lp~~~~ 220 (232)
+||+||+++.+| ++|++|+.++
T Consensus 73 ~rLaCqa~~~sD---l~Ielp~~~~ 94 (631)
T 3zyy_X 73 YVLACQTYPESD---LIIEIPFDSR 94 (631)
T ss_dssp EEETTTEEECSS---EEEECCTTSS
T ss_pred cEEeeeCEECCC---EEEEecchhh
Confidence 999999999998 9999998765
No 31
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.56 E-value=6e-15 Score=130.93 Aligned_cols=87 Identities=13% Similarity=0.223 Sum_probs=70.6
Q ss_pred CceeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCC
Q psy1437 114 DEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLK 193 (232)
Q Consensus 114 ~~mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~ 193 (232)
+..++|+| .++|.+ |++.+|+|||++++++|++++++|+ .|.||+|+|+|++|.++. . + ..|+. .+.
T Consensus 235 ~~~~~v~~-~~~~~~--~~~~~~~~ll~a~~~~g~~~~~~C~-~G~Cg~C~~~v~~G~~~~-~-----~-~~l~~-~e~- 301 (321)
T 2pia_A 235 NTPFTVRL-SRSGTS--FEIPANRSILEVLRDANVRVPSSCE-SGTCGSCKTALCSGEADH-R-----D-MVLRD-DEK- 301 (321)
T ss_dssp CCCEEEEE-TTTCCE--EEECTTSCHHHHHHHTTCCCCCSCS-SSSSCTTEEEEEESCEEC-C-----C-SSCCT-TTT-
T ss_pred CccEEEEE-eCCCeE--EEECCCCcHHHHHHHcCCCCCCCCC-CCCCCCCEEEEecCcccc-c-----c-CCCCh-HHH-
Confidence 44588887 477765 8899999999999999999999995 899999999999997541 1 1 46663 456
Q ss_pred CCcEEeeeeEEecCCCceEEEe
Q psy1437 194 DNSRLGCQIILTKELEGIEVTL 215 (232)
Q Consensus 194 ~g~RLaCQ~~~~~dl~g~~V~l 215 (232)
+|+||+||+++.+| .++|++
T Consensus 302 ~g~~L~C~~~~~~d--~~~i~l 321 (321)
T 2pia_A 302 GTQIMVCVSRAKSA--ELVLDL 321 (321)
T ss_dssp TTEEETTTCEESSS--EEEECC
T ss_pred CCeEEEeEeEECCC--cEEEeC
Confidence 99999999999986 477654
No 32
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.45 E-value=5.8e-15 Score=136.77 Aligned_cols=73 Identities=27% Similarity=0.336 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh-cc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 2 GLPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA-NS-SSDENVAAWRQKAQQYLNRAEVLKDKIQVMF 74 (232)
Q Consensus 2 ~~~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~-~e-~~~~~~~~~~~k~~eY~~RaE~lk~~~~~~~ 74 (232)
+++++|++++++||++|++|+|++|+.||++|+++|++++ +| ++++.++.|++|+.+|++|||+||+++++.+
T Consensus 6 ~~~~~A~~~~~~Av~~D~~g~~~eA~~~Y~~a~~~l~~~~k~e~~~~~~k~~ir~k~~ey~~Rae~Lk~~l~k~~ 80 (444)
T 2zan_A 6 TNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLKKKE 80 (444)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4789999999999999999999999999999999999999 67 6777789999999999999999999997654
No 33
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=98.53 E-value=1.3e-07 Score=93.26 Aligned_cols=87 Identities=14% Similarity=0.190 Sum_probs=60.4
Q ss_pred eeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCC-----CCCcccccCEEEEecCCccCCCCCChhHHhhcCCcC
Q psy1437 116 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGAC-----EASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAP 190 (232)
Q Consensus 116 mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~C-----gG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~ 190 (232)
||+|++ +|+. +++++|+|||++++++||+||+.| ++.|.|+.|.|.|..+..+ .+ -..+++...
T Consensus 1 mv~i~i---dg~~--~~v~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~V~v~~~~~~-----~~-g~~~~~~~G 69 (783)
T 3i9v_3 1 MVRVKV---NDRI--VEVPPGTSVMDAVFHAGYDVPLFCSEKHLSPIGACRMCLVRIGLPKKG-----PD-GKPLLNEKG 69 (783)
T ss_dssp CEEEEC---SSCE--EEECTTCBHHHHHHHTTCCCCCSSCCTTSCCCCCSCCSEEEEECC--------------------
T ss_pred CeEEEE---CCEE--EEeCCCChHHHHHHHhCCCccccCCCCCCCCCcccCCcEEEecccccc-----cc-ccccccccc
Confidence 566663 6876 889999999999999999999999 5579999999999633110 00 001111100
Q ss_pred ----CCCCCcEEeeeeEEecCCCceEEEec
Q psy1437 191 ----FLKDNSRLGCQIILTKELEGIEVTLP 216 (232)
Q Consensus 191 ----~~~~g~RLaCQ~~~~~dl~g~~V~lp 216 (232)
+-..+..+||++.+.++ |+|+..
T Consensus 70 ~~~~~~~~~~~~aC~t~v~~g---m~v~t~ 96 (783)
T 3i9v_3 70 EPEIQWQPKLAASCVTAVADG---MVVDTL 96 (783)
T ss_dssp ---CCBCSSCEETTTCBCCSS---EEEESS
T ss_pred ccccccCCCcccccCCCCCCC---CEEEEC
Confidence 11357889999999875 999864
No 34
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=98.34 E-value=1e-06 Score=71.44 Aligned_cols=69 Identities=16% Similarity=0.287 Sum_probs=54.1
Q ss_pred EEEEEeCCCCEEEEEecCCchHHHHHHHC-CCC-ccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCC
Q psy1437 118 NITFIDKDGKRREIKGKVGDNVLYLAHRY-EIP-MEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDN 195 (232)
Q Consensus 118 ~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~-gi~-l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g 195 (232)
.|+|. .+|+.+++.+.+|+|||++++++ |+. .++.|+ .|.||+|.|.| +|.
T Consensus 11 ~i~~~-ing~~~~~~v~~~~tlL~~Lr~~~gl~g~~~~C~-~G~CGaC~V~v-dG~------------------------ 63 (168)
T 1t3q_A 11 RISAT-INGKPRVFYVEPRMHLADALREVVGLTGTKIGCE-QGVCGSCTILI-DGA------------------------ 63 (168)
T ss_dssp EEEEE-ETTEEEEEEECTTSBHHHHHHHTTCCTTSCCSCS-SSSSCTTEEEE-TTE------------------------
T ss_pred eEEEE-ECCEEEEEecCCCCcHHHHHHhcCCCCccccCCC-CCCCCCcEEEE-CCC------------------------
Confidence 45543 57888888899999999999997 997 889997 79999999999 441
Q ss_pred cEEeeeeEEecCCCceEEE
Q psy1437 196 SRLGCQIILTKELEGIEVT 214 (232)
Q Consensus 196 ~RLaCQ~~~~~dl~g~~V~ 214 (232)
.++||.+.+.. ++|..|.
T Consensus 64 ~v~sC~~~~~~-~~G~~v~ 81 (168)
T 1t3q_A 64 PMRSCLTLAVQ-AEGCSIE 81 (168)
T ss_dssp EEEGGGSBGGG-GTTCEEE
T ss_pred EeechhhHHHH-hCCCeEE
Confidence 16788887664 3566554
No 35
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=98.24 E-value=1.4e-06 Score=83.10 Aligned_cols=68 Identities=18% Similarity=0.364 Sum_probs=55.1
Q ss_pred eeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCC-----C-CcccccCEEEEecCCccCCCCCChhHHhhcCCc
Q psy1437 116 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACE-----A-SLACTTCHVYVKHEYLDALPPAEEKEDDLLDLA 189 (232)
Q Consensus 116 mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~Cg-----G-~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~ 189 (232)
||+++ .+|+. +++++|+|||++|+++|+.+|+.|. + .|.||.|.|.|. |.
T Consensus 1 mv~~~---ing~~--v~v~~g~tiL~a~~~~gi~ip~lC~~~~~~~~~G~Cg~C~V~v~-g~------------------ 56 (574)
T 3c8y_A 1 MKTII---INGVQ--FNTDEDTTILKFARDNNIDISALCFLNNCNNDINKCEICTVEVE-GT------------------ 56 (574)
T ss_dssp CEEEE---ETTEE--EEECCCCBHHHHHHHTTCCCCCSSCBTTBCCSSSCCCTTEEEET-TT------------------
T ss_pred CeEEE---ECCEE--EEeCCCCHHHHHHHHcCCCCCcccCCCCCCCCcccCCCCEEEeC-CC------------------
Confidence 45555 46865 8899999999999999999999997 6 899999999983 21
Q ss_pred CCCCCCcEEeeeeEEecCCCceEEEe
Q psy1437 190 PFLKDNSRLGCQIILTKELEGIEVTL 215 (232)
Q Consensus 190 ~~~~~g~RLaCQ~~~~~dl~g~~V~l 215 (232)
. .++||++.+.+ |++|..
T Consensus 57 ----~-~~~aC~t~v~~---gm~V~T 74 (574)
T 3c8y_A 57 ----G-LVTACDTLIED---GMIINT 74 (574)
T ss_dssp ----E-EEEGGGCBCCT---TCEEES
T ss_pred ----c-ccccCCCCccc---ceeEEe
Confidence 1 57899998885 588874
No 36
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Probab=98.23 E-value=1.9e-06 Score=73.30 Aligned_cols=61 Identities=18% Similarity=0.358 Sum_probs=47.8
Q ss_pred EEEEecCCchHHHHHHHCCC------CccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCCcEEeeee
Q psy1437 129 REIKGKVGDNVLYLAHRYEI------PMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQI 202 (232)
Q Consensus 129 ~~v~~~~G~tLL~aa~~~gi------~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g~RLaCQ~ 202 (232)
++|++.+|+|||++|+..|+ .....|+ .|.||+|.|.| +|. .+|||++
T Consensus 26 ~~~~~~~~~tll~al~~~~~~~~p~l~~~~~c~-~G~Cg~C~v~v-~G~------------------------~~~aC~~ 79 (243)
T 1kf6_B 26 YEVPYDATTSLLDALGYIKDNLAPDLSYRWSCR-MAICGSCGMMV-NNV------------------------PKLACKT 79 (243)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTCTTCCCCCCCS-SSSSCCCEEEE-TTE------------------------EEEGGGC
T ss_pred EEEecCCCChHHHHHHHcCcccCCCcccccCCC-CCcCCCCEeEE-CCE------------------------EEeeeee
Confidence 57889999999999999983 3567895 89999999997 452 1789998
Q ss_pred EEecCCCceEEEe
Q psy1437 203 ILTKELEGIEVTL 215 (232)
Q Consensus 203 ~~~~dl~g~~V~l 215 (232)
.+....++++|+-
T Consensus 80 ~~~~~~~~~~i~~ 92 (243)
T 1kf6_B 80 FLRDYTDGMKVEA 92 (243)
T ss_dssp BGGGCTTCEEEEC
T ss_pred EHhhCCCcEEEEe
Confidence 8876545577764
No 37
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Probab=97.93 E-value=1.4e-05 Score=67.74 Aligned_cols=61 Identities=13% Similarity=0.328 Sum_probs=45.7
Q ss_pred EEEEecCCchHHHHHHHCC------CCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCCcEEeeee
Q psy1437 129 REIKGKVGDNVLYLAHRYE------IPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQI 202 (232)
Q Consensus 129 ~~v~~~~G~tLL~aa~~~g------i~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g~RLaCQ~ 202 (232)
++|++.+|+|||++|+..| +...++|+ .|.||+|.|.| +|.. +|||++
T Consensus 26 ~~v~~~~~~tlL~~l~~~~~~~~~~l~~~~~c~-~g~Cg~C~v~i-~G~~------------------------~~aC~~ 79 (241)
T 2bs2_B 26 YKIEEAPSMTIFIVLNMIRETYDPDLNFDFVCR-AGICGSCGMMI-NGRP------------------------SLACRT 79 (241)
T ss_dssp EEEECCTTCBHHHHHHHHHHHTCTTCCCCCSSS-SSSSCTTEEEE-TTEE------------------------EEGGGC
T ss_pred EEEeCCCCChHHHHHHHhchhcCCCCccCCCCC-CCCCCCCEeEE-CCCe------------------------ecchhC
Confidence 5688889999999999754 34557997 79999999999 6630 488888
Q ss_pred EEecCCCc--eEEEec
Q psy1437 203 ILTKELEG--IEVTLP 216 (232)
Q Consensus 203 ~~~~dl~g--~~V~lp 216 (232)
.+.. ++| ++|+..
T Consensus 80 ~~~~-~~g~~~~ie~l 94 (241)
T 2bs2_B 80 LTKD-FEDGVITLLPL 94 (241)
T ss_dssp BGGG-CTTSEEEEECC
T ss_pred cHhH-cCCCeEEEecC
Confidence 7765 233 666643
No 38
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=97.87 E-value=2.7e-05 Score=62.66 Aligned_cols=49 Identities=20% Similarity=0.412 Sum_probs=41.7
Q ss_pred EEEEEeCCCCEEEEEecCCchHHHHHHHC-CC-CccCCCCCCcccccCEEEEe
Q psy1437 118 NITFIDKDGKRREIKGKVGDNVLYLAHRY-EI-PMEGACEASLACTTCHVYVK 168 (232)
Q Consensus 118 ~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~-gi-~l~~~CgG~G~CgtC~v~v~ 168 (232)
.|+|. .+|+.+++++.+++|||+++++. |+ .....|+ .|.||.|.|.|.
T Consensus 5 ~i~~~-vNG~~~~v~v~p~~tLLd~LR~~lgltgtk~gC~-~G~CGACtV~vd 55 (160)
T 3hrd_D 5 TINLN-LNGEARSIVTEPNKRLLDLLREDFGLTSVKEGCS-EGECGACTVIFN 55 (160)
T ss_dssp EEEEE-ETTEEEEEEECSSSBHHHHHHTTSCCTTSCCSSS-SSSSCTTEEEET
T ss_pred eEEEE-ECCEEEEEecCCCCCHHHHHHHhcCCCccccccC-CCCCCCCEEEEC
Confidence 46653 67988889999999999999986 76 4788997 799999999984
No 39
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=97.82 E-value=3.6e-05 Score=61.92 Aligned_cols=69 Identities=20% Similarity=0.369 Sum_probs=52.9
Q ss_pred EEEEEeCCCCEEEEEecCCchHHHHHHHC-CC-CccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCC
Q psy1437 118 NITFIDKDGKRREIKGKVGDNVLYLAHRY-EI-PMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDN 195 (232)
Q Consensus 118 ~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~-gi-~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g 195 (232)
.|+|. .+|+.+++.+.+|+|||+++++. |+ .....|+ .|.||.|.|.| +|.
T Consensus 4 ~i~~~-vNG~~~~v~~~~~~tLL~~Lr~~~gl~g~k~gC~-~G~CGaCtV~v-dG~------------------------ 56 (161)
T 1rm6_C 4 ILRLT-LNGRAREDLVPDNMLLLDYLRETVGLTGTKQGCD-GGECGACTVLV-DDR------------------------ 56 (161)
T ss_dssp EEEEE-ETTEEEEEEEETTCBHHHHHHHTTCCTTSCCCSS-SSSSCTTEEEE-TTE------------------------
T ss_pred eEEEE-ECCEEEEEecCCcCcHHHHHHHcCCCcccccCCC-CCCCCCCEEEE-CCc------------------------
Confidence 35553 58998888899999999999987 75 4788998 79999999999 341
Q ss_pred cEEeeeeEEecCCCceEEE
Q psy1437 196 SRLGCQIILTKELEGIEVT 214 (232)
Q Consensus 196 ~RLaCQ~~~~~dl~g~~V~ 214 (232)
.++||++.+.. ++|..|.
T Consensus 57 ~v~sC~~~~~~-~~G~~v~ 74 (161)
T 1rm6_C 57 PRLACSTLAHQ-VAGKKVE 74 (161)
T ss_dssp EEEGGGSBGGG-GTTSEEE
T ss_pred EEechHHHHHH-hCCceEE
Confidence 27788887664 3555443
No 40
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=97.81 E-value=4.1e-05 Score=61.92 Aligned_cols=49 Identities=14% Similarity=0.301 Sum_probs=40.4
Q ss_pred EEEEEeCCCCEEEEEecCCchHHHHHHHC-CCC-ccCCCCCCcccccCEEEEe
Q psy1437 118 NITFIDKDGKRREIKGKVGDNVLYLAHRY-EIP-MEGACEASLACTTCHVYVK 168 (232)
Q Consensus 118 ~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~-gi~-l~~~CgG~G~CgtC~v~v~ 168 (232)
.|+|. .+|+.+++.+.+++|||+++++. |+. ....|+ .|.||.|.|.|.
T Consensus 5 ~i~~~-vNG~~~~~~v~~~~tLLd~LR~~lgl~g~k~gC~-~G~CGaCtV~vd 55 (166)
T 1n62_A 5 HIELT-INGHPVEALVEPRTLLIHFIREQQNLTGAHIGCD-TSHCGACTVDLD 55 (166)
T ss_dssp EEEEE-ETTEEEEEEECTTCBHHHHHHHTSCCTTSCCCCS-SSCSCTTEEEET
T ss_pred eEEEE-ECCEEEEEecCCCCcHHHHHHHcCCCCccccCCC-CCCCCCCEEEEC
Confidence 35553 57998889999999999999985 653 678997 799999999993
No 41
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=97.80 E-value=4.3e-05 Score=61.63 Aligned_cols=49 Identities=20% Similarity=0.318 Sum_probs=40.2
Q ss_pred EEEEEeCCCCEEEEEecCCchHHHHHHHC-CCC-ccCCCCCCcccccCEEEEe
Q psy1437 118 NITFIDKDGKRREIKGKVGDNVLYLAHRY-EIP-MEGACEASLACTTCHVYVK 168 (232)
Q Consensus 118 ~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~-gi~-l~~~CgG~G~CgtC~v~v~ 168 (232)
.|+|. .+|+.+++++.+++|||+++++. |+. ....|+ .|.||.|.|.|.
T Consensus 5 ~i~~~-vNG~~~~~~v~~~~tLLd~LR~~lgltg~k~gC~-~G~CGaCtV~vd 55 (163)
T 1ffv_A 5 IITVN-VNGKAQEKAVEPRTLLIHFLREELNLTGAHIGCE-TSHCGACTVDID 55 (163)
T ss_dssp EEEEE-ETTEEEEEEECTTCBHHHHHHHTSCCTTSCCCCS-SSCSCTTEEEET
T ss_pred eEEEE-ECCEEEEEecCCCCcHHHHHHhcCCCcccccCCC-CCCCCCCEEEEC
Confidence 35543 57998889999999999999984 653 678998 799999999983
No 42
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*
Probab=97.74 E-value=4.9e-05 Score=64.19 Aligned_cols=40 Identities=8% Similarity=0.169 Sum_probs=33.9
Q ss_pred EEEEecC--CchHHHHHHHCC-----CCccCCCCCCcccccCEEEEecC
Q psy1437 129 REIKGKV--GDNVLYLAHRYE-----IPMEGACEASLACTTCHVYVKHE 170 (232)
Q Consensus 129 ~~v~~~~--G~tLL~aa~~~g-----i~l~~~CgG~G~CgtC~v~v~~g 170 (232)
++|.+.+ |+|||++|+..+ +....+|+ .|.||+|.|.| +|
T Consensus 23 ~~v~~~~~~~~tll~~l~~~~~~~~~l~~~~~C~-~g~Cg~C~v~v-~G 69 (238)
T 2wdq_B 23 YTLEADEGRDMMLLDALIQLKEKDPSLSFRRSCR-EGVCGSDGLNM-NG 69 (238)
T ss_dssp EEEECCTTCCCBHHHHHHHHHHHCTTCCCCCSSS-SSSSCTTEEEE-TT
T ss_pred EEeecCCCCCChHHHHHHHhcccCCCccccccCC-CCCCCCCEEEE-CC
Confidence 5688888 999999999987 45567897 79999999998 45
No 43
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...
Probab=97.62 E-value=0.0001 Score=63.02 Aligned_cols=75 Identities=16% Similarity=0.278 Sum_probs=51.7
Q ss_pred CceeEEEEEeCC----C-----CEEEEEecC-CchHHHHHHHCCC------CccCCCCCCcccccCEEEEecCCccCCCC
Q psy1437 114 DEIVNITFIDKD----G-----KRREIKGKV-GDNVLYLAHRYEI------PMEGACEASLACTTCHVYVKHEYLDALPP 177 (232)
Q Consensus 114 ~~mv~Vt~~~~~----G-----~~~~v~~~~-G~tLL~aa~~~gi------~l~~~CgG~G~CgtC~v~v~~g~~~~l~~ 177 (232)
..+++|.+.-.+ + +.++|.+.+ |.|||++|+..++ .....|+ .|.||+|.|.| +|.
T Consensus 9 ~~~~~~~i~R~~~~~~~~~~~~~~~~v~~~~~~~tlLd~l~~~~~~~~p~l~~~~~c~-~g~Cg~C~v~i-~G~------ 80 (252)
T 2h88_B 9 SRIKKFSIYRWDPDKPGDKPRMQTYEVDLNKCGPMVLDALIKIKNELDSTLTFRRSCR-EGICGSCAMNI-AGG------ 80 (252)
T ss_dssp CCEEEEEEEECCTTSTTSCCEEEEEEEEGGGSCSBHHHHHHHHHHHTCTTCCCCCSCS-SSSSCTTEEEE-TTE------
T ss_pred CceEEEEEEEeCCCCCCCCceEEEEEEecCCCCChHHHHHHHhCcccCCCccccCCCC-CCCCCCCEEEE-CCc------
Confidence 445666665322 2 235677778 9999999999862 2456896 79999999996 441
Q ss_pred CChhHHhhcCCcCCCCCCcEEeeeeEEecCCC--ceEEEe
Q psy1437 178 AEEKEDDLLDLAPFLKDNSRLGCQIILTKELE--GIEVTL 215 (232)
Q Consensus 178 ~~~~E~~~L~~~~~~~~g~RLaCQ~~~~~dl~--g~~V~l 215 (232)
.+|||++.+..- + .++|+-
T Consensus 81 ------------------~~~aC~~~~~~~-~g~~~~iep 101 (252)
T 2h88_B 81 ------------------NTLACTKKIDPD-LSKTTKIYP 101 (252)
T ss_dssp ------------------EEEGGGSBCCCC-TTSCEEEEC
T ss_pred ------------------EEccccCCHhHc-CCCceEEec
Confidence 377888877652 3 367773
No 44
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.58 E-value=0.00049 Score=52.17 Aligned_cols=67 Identities=22% Similarity=0.224 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh-ccC------Ch--HHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 4 PEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA-NSS------SD--ENVAAWRQKAQQYLNRAEVLKDKI 70 (232)
Q Consensus 4 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~-~e~------~~--~~~~~~~~k~~eY~~RaE~lk~~~ 70 (232)
..+|..++.+|++.|..|+-++|+.+|++||+.|...+ -.. ++ .....+++|+.+=+.=|..--..|
T Consensus 19 h~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar~lq~KM~~nL~~v~~RL~~L 94 (116)
T 2dl1_A 19 YKKAFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQKMKETLQNVRTRLEIL 94 (116)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999987 221 11 112247777777555443333333
No 45
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=97.15 E-value=0.002 Score=46.57 Aligned_cols=59 Identities=19% Similarity=0.234 Sum_probs=45.2
Q ss_pred chHHHHHHHHHHHHhhhh---cCHHHHHHHHHHHHHHHHHHh-ccCCh-----HHHHHHHHHHHHHHH
Q psy1437 3 LPEEVINAAQMAVKFDEE---NQDEIAAYYYQAAARFLLETA-NSSSD-----ENVAAWRQKAQQYLN 61 (232)
Q Consensus 3 ~~~~A~~~~~~Av~~D~~---g~~~~A~~~Y~~ai~~l~~~~-~e~~~-----~~~~~~~~k~~eY~~ 61 (232)
..+.|..++.+|...|.. |+-++|+.+|++||+-|...+ -..+. ..-..+++|+.+=+.
T Consensus 12 ~h~~AF~~Is~aL~~DE~~~~G~k~~A~~~YkkGi~eL~~Gi~V~~~g~G~~we~Ar~LQ~KM~~nL~ 79 (89)
T 3eab_A 12 FHKQAFEYISIALRIDEDEKAGQKEQAVEWYKKGIEELEKGIAVIVTGQGEQCERARRLQAKMMTNLV 79 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHSCSSSGGGSHHHHHHHHHHHHHHHHSCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhcCCccCCCChhHHHHHHHHHHHHHHHH
Confidence 357899999999999999 999999999999999999987 32221 122246666666444
No 46
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=96.86 E-value=0.02 Score=41.58 Aligned_cols=68 Identities=10% Similarity=0.118 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHhc-cCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 4 PEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETAN-SSSDENVAAWRQKAQQYLNRAEVLKDKIQ 71 (232)
Q Consensus 4 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~-e~~~~~~~~~~~k~~eY~~RaE~lk~~~~ 71 (232)
++-|=-.-++|-.+=..|+|++||.|+++|+.||..|++ ..++.....|.-.-.-++.-.+-|++..+
T Consensus 12 Ln~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~eAmkltqs~qa~~SLqLQrd~HlKQ~~liq~r~k 80 (97)
T 2crb_A 12 LNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEAMKLTESEQAHLSLELQRDSHMKQLLLIQERWK 80 (97)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666778999999999999999999999999999994 34555555555444555555555555443
No 47
>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A {Desulfovibrio gigas} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1 PDB: 1sij_A* 1zcs_A* 3fah_A* 3fc4_A* 3l4p_A*
Probab=96.72 E-value=0.0023 Score=64.05 Aligned_cols=50 Identities=12% Similarity=0.274 Sum_probs=42.6
Q ss_pred eeEEEEEeCCCCEEEEEecCCchHHHHHHHC-CC-CccCCCCCCcccccCEEEE
Q psy1437 116 IVNITFIDKDGKRREIKGKVGDNVLYLAHRY-EI-PMEGACEASLACTTCHVYV 167 (232)
Q Consensus 116 mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~-gi-~l~~~CgG~G~CgtC~v~v 167 (232)
|.+|+|. .+|+.+++.+.++++||+++++. |+ .....|+ .|.||.|-|.|
T Consensus 1 ~~~~~~~-~ng~~~~~~~~~~~~ll~~Lr~~~~l~g~k~gC~-~g~CGaCtv~v 52 (907)
T 1vlb_A 1 MIQKVIT-VNGIEQNLFVDAEALLSDVLRQQLGLTGVKVGCE-QGQCGACSVIL 52 (907)
T ss_dssp CEEEEEE-ETTEEEEEEECTTSBHHHHHHHTTCCTTSCCSSS-SSSSCTTEEEE
T ss_pred CceEEEE-ECCEEEEEecCCCChHHHHHHHhcCCCeecCCCC-CCCcCccEEEE
Confidence 4467764 78999999999999999999984 65 5788998 69999999998
No 48
>3nvw_A Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, guanine, oxidoredu; HET: FAD MTE GUN; 1.60A {Bos taurus} PDB: 3etr_A* 3ns1_A* 3nvv_A* 3nrz_A* 3nvy_A* 3nvz_A* 3rca_A* 3sr6_A* 3eub_A*
Probab=96.65 E-value=0.0018 Score=52.07 Aligned_cols=50 Identities=18% Similarity=0.305 Sum_probs=39.9
Q ss_pred eeEEEEEeCCCCEE-EEEecCCchHHHHHHHC-CC-CccCCCCCCcccccCEEEEec
Q psy1437 116 IVNITFIDKDGKRR-EIKGKVGDNVLYLAHRY-EI-PMEGACEASLACTTCHVYVKH 169 (232)
Q Consensus 116 mv~Vt~~~~~G~~~-~v~~~~G~tLL~aa~~~-gi-~l~~~CgG~G~CgtC~v~v~~ 169 (232)
+++++ .+|+.+ .+.+.++.+||+.+++. |+ .....|+ .|.||.|-|.|..
T Consensus 4 ~i~~~---vNG~~~~~~~~~p~~~Ll~~LR~~lgltGtK~GC~-~G~CGACTVlvd~ 56 (164)
T 3nvw_A 4 ELVFF---VNGKKVVEKNADPETTLLAYLRRKLGLRGTKLGCG-EGGCGACTVMLSK 56 (164)
T ss_dssp CEEEE---ETTEEEEETTCCTTCBHHHHHHHTSCCTTSCCSCS-SSSSCTTEEEEEE
T ss_pred eEEEE---ECCEEEEEecCCCCCCHHHHHHHHcCCCCcCCCcC-CCCCCCCEEEEcc
Confidence 34444 468774 56789999999999985 76 4788997 7999999999973
No 49
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A*
Probab=96.60 E-value=0.0027 Score=59.03 Aligned_cols=49 Identities=18% Similarity=0.458 Sum_probs=40.8
Q ss_pred EEEEeCCCCEEEE-EecCCchHHHHHHHCCCC-ccCCCCCCcccccCEEEEec
Q psy1437 119 ITFIDKDGKRREI-KGKVGDNVLYLAHRYEIP-MEGACEASLACTTCHVYVKH 169 (232)
Q Consensus 119 Vt~~~~~G~~~~v-~~~~G~tLL~aa~~~gi~-l~~~CgG~G~CgtC~v~v~~ 169 (232)
|+|. .+|+.+++ .+.++++||+.++..|+. ....|+ .|.||.|-|.|..
T Consensus 3 ~~~~-vNg~~~~~~~~~~~~~Ll~~Lr~~~l~g~k~gC~-~G~CGaCtV~v~~ 53 (462)
T 2w3s_A 3 IAFL-LNGETRRVRIEDPTQSLLEWLRAEGLTGTKEGCN-EGDCGACTVMIRD 53 (462)
T ss_dssp EEEE-ETTEEEEEECSCTTCBHHHHHHHTTCTTSCCSCS-SSSSCTTEEEEEE
T ss_pred EEEE-ECCEEEEEecCCCCCcHHHHHHHcCCCccCCCCC-CCCcCCcEEEEEe
Confidence 5553 57998888 789999999999966764 778998 6999999999953
No 50
>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1
Probab=96.50 E-value=0.0026 Score=63.73 Aligned_cols=50 Identities=18% Similarity=0.357 Sum_probs=42.1
Q ss_pred eeEEEEEeCCCCEEEEEecCCchHHHHHHHC-CC-CccCCCCCCcccccCEEEE
Q psy1437 116 IVNITFIDKDGKRREIKGKVGDNVLYLAHRY-EI-PMEGACEASLACTTCHVYV 167 (232)
Q Consensus 116 mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~-gi-~l~~~CgG~G~CgtC~v~v 167 (232)
|.+|+|. .+|+.+++.+.++++||+++++. |+ .....|+ .|.||.|-|.|
T Consensus 1 ~~~~~~~-~ng~~~~~~~~~~~~ll~~Lr~~~~l~g~k~gC~-~G~CGaCtv~v 52 (907)
T 1dgj_A 1 METKTLI-VNGMARRLLVSPNDLLVDVLRSQLQLTSVKVGCG-KGQCGACTVIL 52 (907)
T ss_dssp CEEEECE-ETTBCCEEEECTTCBHHHHHHHTTCCTTSCCSSS-SSSSCTTEEEE
T ss_pred CceEEEE-ECCEEEEEecCCCCcHHHHHHHhcCCCccCCCCC-CCCcCceEEEE
Confidence 3456764 68988899999999999999984 65 4678998 69999999999
No 51
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Probab=96.41 E-value=0.0075 Score=52.53 Aligned_cols=40 Identities=15% Similarity=0.326 Sum_probs=31.7
Q ss_pred EEEEEecC-CchHHHHHHHCCCC------ccCCCCCCcccccCEEEEe
Q psy1437 128 RREIKGKV-GDNVLYLAHRYEIP------MEGACEASLACTTCHVYVK 168 (232)
Q Consensus 128 ~~~v~~~~-G~tLL~aa~~~gi~------l~~~CgG~G~CgtC~v~v~ 168 (232)
.++|.+.+ |.|||++++..+.. ...+|+ .|.||+|.|.|-
T Consensus 56 ~~~v~v~~~~~tlLdaL~~i~~~~~ptl~~~~~C~-~G~CGsC~V~In 102 (282)
T 3vr8_B 56 KFDVDLDKCGTMVLDALIKIKNEVDPTLTFRRSCR-EGICGSCAMNIA 102 (282)
T ss_pred EEEEEeCCCCCcHHHHHHhcCcccCCceeecCCCC-CCCCCCCEEEEC
Confidence 46677888 99999999986643 236797 699999999874
No 52
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=96.09 E-value=0.027 Score=44.29 Aligned_cols=71 Identities=21% Similarity=0.231 Sum_probs=54.7
Q ss_pred chHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh-c--cC-C---hHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q psy1437 3 LPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA-N--SS-S---DENVAAWRQKAQQY-LNRAEVLKDKIQVMF 74 (232)
Q Consensus 3 ~~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~-~--e~-~---~~~~~~~~~k~~eY-~~RaE~lk~~~~~~~ 74 (232)
++..|.++.+.|-.+-.+|+++.|+.+|...+.+++..+ . +. . +..+ .+..++.+= ++++|.||..|...-
T Consensus 36 ylrta~~llr~A~~y~~egd~e~AYily~R~~~L~~e~IpkHpdy~~~~~~~~~-~~l~~l~~~~~~~lE~LK~~L~~rY 114 (146)
T 2xze_A 36 YFRSGVEIIRMASIYSEEGNIEHAFILYNKYITLFIEKLPKHRDYKSAVIPEKK-DTVKKLKEIAFPKAEELKAELLKRY 114 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTGGGSTTTTTCCCTTHH-HHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHcccCccchhhhhHHHH-HHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999998776 3 21 1 3333 344455554 888999998886543
No 53
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1
Probab=96.07 E-value=0.033 Score=43.74 Aligned_cols=73 Identities=11% Similarity=0.079 Sum_probs=55.5
Q ss_pred chHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHhc--c--CC-hHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 3 LPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETAN--S--SS-DENVAA-WRQKAQQYLNRAEVLKDKIQVMFL 75 (232)
Q Consensus 3 ~~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~--e--~~-~~~~~~-~~~k~~eY~~RaE~lk~~~~~~~~ 75 (232)
++..|.++.+.|-.+..+|+.+.|+.+|..-+.++..+-. + .. ...+.. ++.++..=++++|.||..|...-.
T Consensus 38 y~rsa~~L~r~A~~y~~EGd~E~AYilymRy~~L~~kIpkHpdyk~~~~~~k~~l~k~~~~~vl~~lE~LK~~L~~rYe 116 (144)
T 2a9u_A 38 YVHSALKIFKTAEECRLDRDEERAYVLYMKYVTVYNLIKKRPDFKQQQDYFHSILGPGNIKKAVEEAERLSESLKLRYE 116 (144)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSHHHHHTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4778999999999999999999999999999998853322 1 11 112222 356677889999999999976543
No 54
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=95.59 E-value=0.11 Score=36.41 Aligned_cols=61 Identities=16% Similarity=0.202 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHhc-cCChHHHHHHHHHHHHHHHHHHHHH
Q psy1437 7 VINAAQMAVKFDEENQDEIAAYYYQAAARFLLETAN-SSSDENVAAWRQKAQQYLNRAEVLK 67 (232)
Q Consensus 7 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~-e~~~~~~~~~~~k~~eY~~RaE~lk 67 (232)
=.+.++.|=++=-.|||+.|+.||+.+++.+...+. -.|+..|..+.+-.++-.+=-+.+|
T Consensus 12 i~e~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l~~~~d~~~r~kW~~~~~ei~~E~~~Vk 73 (78)
T 2rpa_A 12 IVENVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYSVKDTHLRQKWQQVWQEINVEAKQVK 73 (78)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhcCCHHHHHhHHHHHHHHHHHHHHHH
Confidence 456677888888899999999999999999998884 4587777766555444333333333
No 55
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=94.37 E-value=0.035 Score=51.22 Aligned_cols=48 Identities=17% Similarity=0.155 Sum_probs=33.3
Q ss_pred eeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCC---C--CCcccccCEEEEe
Q psy1437 116 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGAC---E--ASLACTTCHVYVK 168 (232)
Q Consensus 116 mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~C---g--G~G~CgtC~v~v~ 168 (232)
+++++ .||+. +++.+|+||+++++++|+++...| . |.-.|+.|.|.|.
T Consensus 15 ~v~~~---~dg~~--~~~~~g~ti~~a~~~~g~~~~~~~~~~~p~g~~~~~~c~v~v~ 67 (493)
T 1y56_A 15 KVTIY---FEGKE--LEAYEGEKLPVALLANEIYWLTTSNEGRKRGAFTFGPVPMTVN 67 (493)
T ss_dssp EEEEE---ETTEE--EEEETTCBHHHHHHHTTCCCCEECTTSCEECSSSSSCCEEBSS
T ss_pred eEEEE---ECCEE--EEecCCCHHHHHHHHCCCceecCCCCCCCCccccceEEEEEEC
Confidence 45555 47866 888999999999999999752211 1 1222788988764
No 56
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=92.65 E-value=0.67 Score=36.65 Aligned_cols=31 Identities=13% Similarity=0.007 Sum_probs=19.9
Q ss_pred HHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh
Q psy1437 11 AQMAVKFDEENQDEIAAYYYQAAARFLLETA 41 (232)
Q Consensus 11 ~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~ 41 (232)
..++.-+-+-|+|++|+.+|..||++|...+
T Consensus 61 ~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 61 AGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 3333334444777788888887777766665
No 57
>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL; 1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A* 1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B* 3b9j_A* 1fiq_A*
Probab=92.43 E-value=0.14 Score=53.31 Aligned_cols=48 Identities=19% Similarity=0.380 Sum_probs=39.1
Q ss_pred EEEEeCCCCEEEE-EecCCchHHHHHHHC-CCC-ccCCCCCCcccccCEEEEe
Q psy1437 119 ITFIDKDGKRREI-KGKVGDNVLYLAHRY-EIP-MEGACEASLACTTCHVYVK 168 (232)
Q Consensus 119 Vt~~~~~G~~~~v-~~~~G~tLL~aa~~~-gi~-l~~~CgG~G~CgtC~v~v~ 168 (232)
|+|. .+|+.+++ .+.++.+||+.+++. |+. ....|+ .|.||.|-|.|.
T Consensus 6 i~~~-vNg~~~~~~~~~p~~~ll~~LR~~~~ltgtk~gC~-~g~CGaCtV~~~ 56 (1332)
T 3unc_A 6 LVFF-VNGKKVVEKNADPETTLLAYLRRKLGLRGTKLGCG-EGGCGACTVMLS 56 (1332)
T ss_dssp EEEE-ETTEEEEETTCCTTCBHHHHHHHTSCCTTSCCSCS-SSSSCTTEEEEE
T ss_pred EEEE-ECCEEEEeecCCCCCCHHHHHhhhcCCCCcCCCcC-CCCCCCcEEEEe
Confidence 5543 57988665 689999999999985 764 678997 799999999995
No 58
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=91.30 E-value=0.27 Score=49.36 Aligned_cols=50 Identities=16% Similarity=0.181 Sum_probs=38.7
Q ss_pred ceeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCC-----------CCCCcccccCEEEEe
Q psy1437 115 EIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGA-----------CEASLACTTCHVYVK 168 (232)
Q Consensus 115 ~mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~-----------CgG~G~CgtC~v~v~ 168 (232)
.+-.|+|. .+|+. +.+.+|+||..+++.+|+.+... |+ .|.|..|.|.|.
T Consensus 19 ~~~~~~~~-~dG~~--~~~~~g~tv~~aL~~~Gv~~~~~s~~~~~prg~~~~-~~~c~~~~v~v~ 79 (965)
T 2gag_A 19 REEALSLT-VDGAK--LSAFRGDTVASALLANGVRRAGNSLYLDRPRGIFAA-GVEEPNALVTVS 79 (965)
T ss_dssp EEEEEEEE-ETTEE--EEEEETCBHHHHHHHTTCCBCSCCTTTCCCCBCCCS-STTCCSCEEEEC
T ss_pred CCCeEEEE-ECCEE--EEecCCCHHHHHHHHcCCeEeecCCCCCCCcccccC-CccCCceEEEEc
Confidence 33445553 57866 88899999999999999886543 44 478999999998
No 59
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=90.09 E-value=2.2 Score=31.65 Aligned_cols=38 Identities=16% Similarity=-0.046 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh
Q psy1437 4 PEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA 41 (232)
Q Consensus 4 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~ 41 (232)
++.|..+..++..+=+.|+|++|+.+|.+|++++-...
T Consensus 8 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~ 45 (162)
T 3rkv_A 8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLI 45 (162)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 46678888999999999999999999999999876543
No 60
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=89.95 E-value=2.5 Score=38.97 Aligned_cols=66 Identities=14% Similarity=0.024 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH-----HHHHHHHHHHH
Q psy1437 5 EEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETANSSSDENVAAWRQKAQQY-----LNRAEVLKDKI 70 (232)
Q Consensus 5 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~e~~~~~~~~~~~k~~eY-----~~RaE~lk~~~ 70 (232)
.-|..+.+.|.-+.+.|+|++|..+|++|++.+...+-...|...+.......-| .+-||.+-...
T Consensus 391 ~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~ 461 (490)
T 3n71_A 391 QLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKM 461 (490)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577788889999999999999999999999998887434566666443333333 24455554443
No 61
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=89.86 E-value=0.4 Score=37.95 Aligned_cols=35 Identities=14% Similarity=-0.120 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHH
Q psy1437 5 EEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLE 39 (232)
Q Consensus 5 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~ 39 (232)
..|-.+..++..+.+.|+|++|+.+|.+||++.-.
T Consensus 9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~ 43 (159)
T 2hr2_A 9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHT 43 (159)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC
Confidence 45778889999999999999999999999986543
No 62
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=88.15 E-value=1.4 Score=33.60 Aligned_cols=17 Identities=29% Similarity=0.131 Sum_probs=11.8
Q ss_pred hhcCHHHHHHHHHHHHH
Q psy1437 19 EENQDEIAAYYYQAAAR 35 (232)
Q Consensus 19 ~~g~~~~A~~~Y~~ai~ 35 (232)
..|+|++|+.+|.+|++
T Consensus 82 ~~g~~~~Ai~~~~~al~ 98 (151)
T 3gyz_A 82 IKEQFQQAADLYAVAFA 98 (151)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHh
Confidence 45777777777777664
No 63
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=87.49 E-value=0.95 Score=31.36 Aligned_cols=29 Identities=7% Similarity=0.055 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhhhhcCHHHHHHHHHHHHH
Q psy1437 7 VINAAQMAVKFDEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 7 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 35 (232)
+..+...|..+-..|+|++|+.+|++|++
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 35 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVE 35 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33455666667777777777777777765
No 64
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=87.33 E-value=0.39 Score=34.58 Aligned_cols=39 Identities=15% Similarity=0.325 Sum_probs=27.2
Q ss_pred CCCCCceeEEEEEeCCCCEEEEEecCCchHHHHH----HHCCCC
Q psy1437 110 PKSEDEIVNITFIDKDGKRREIKGKVGDNVLYLA----HRYEIP 149 (232)
Q Consensus 110 ~~~~~~mv~Vt~~~~~G~~~~v~~~~G~tLL~aa----~~~gi~ 149 (232)
|-.+..| .|+++.++|.+.+|.+.++.+|.+++ ...|++
T Consensus 4 ~~~~~~m-~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~ 46 (90)
T 2al3_A 4 PAGGGGS-AVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFN 46 (90)
T ss_dssp ------C-CEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCC
T ss_pred cccCCcc-EEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCC
Confidence 3334555 78888899999999999999988764 456775
No 65
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=86.82 E-value=2.8 Score=30.51 Aligned_cols=21 Identities=19% Similarity=-0.089 Sum_probs=14.0
Q ss_pred HHhhhhcCHHHHHHHHHHHHH
Q psy1437 15 VKFDEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 15 v~~D~~g~~~~A~~~Y~~ai~ 35 (232)
.-+-..|+|++|+.+|..|++
T Consensus 60 ~~~~~~g~~~~A~~~~~~al~ 80 (142)
T 2xcb_A 60 ACRQSLGLYEQALQSYSYGAL 80 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHh
Confidence 334477777777777777764
No 66
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=86.72 E-value=4.3 Score=36.82 Aligned_cols=65 Identities=14% Similarity=-0.043 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHhccCChHHHHHHHH------------HHHHHHHHHHHHHHHH
Q psy1437 6 EVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETANSSSDENVAAWRQ------------KAQQYLNRAEVLKDKI 70 (232)
Q Consensus 6 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~e~~~~~~~~~~~------------k~~eY~~RaE~lk~~~ 70 (232)
-|..+-..|.-+...|+|++|+.+|++|++.....+-+..+..-..+.+ ++..+++||-.|.+..
T Consensus 339 ~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~ 415 (433)
T 3qww_A 339 MLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVA 415 (433)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 3455566788888999999999999999998888773345555444433 3556666666665543
No 67
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=86.46 E-value=0.93 Score=32.97 Aligned_cols=32 Identities=16% Similarity=0.136 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHH
Q psy1437 4 PEEVINAAQMAVKFDEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 4 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 35 (232)
.+.|+..-..+..+=+.|+|++|+.+|.+||+
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~ 36 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIE 36 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555566666777777777777777777775
No 68
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=86.25 E-value=2.9 Score=37.80 Aligned_cols=48 Identities=8% Similarity=-0.100 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHhccCChHHHHH
Q psy1437 4 PEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETANSSSDENVAA 51 (232)
Q Consensus 4 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~e~~~~~~~~ 51 (232)
..-|..+.+.|.-+.+.|+|++|+.+|++|++.+...+-...|..++.
T Consensus 368 p~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 368 PVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 345778888899999999999999999999999998873345666653
No 69
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=85.16 E-value=1.3 Score=32.19 Aligned_cols=24 Identities=13% Similarity=-0.075 Sum_probs=17.2
Q ss_pred HHHHHhhhhcCHHHHHHHHHHHHH
Q psy1437 12 QMAVKFDEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 12 ~~Av~~D~~g~~~~A~~~Y~~ai~ 35 (232)
.+|.-+-..|+|++|+.+|.+|++
T Consensus 52 ~~~~~~~~~~~~~~A~~~~~~al~ 75 (126)
T 4gco_A 52 NRAACLTKLMEFQRALDDCDTCIR 75 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHhhccHHHHHHHHHHHHH
Confidence 344444466888888888888875
No 70
>3zyv_A AOH1; oxidoreductase, molybdenum cofactor; HET: MTE FAD; 2.54A {Mus musculus}
Probab=85.03 E-value=0.98 Score=47.01 Aligned_cols=49 Identities=18% Similarity=0.466 Sum_probs=39.0
Q ss_pred EEEEeCCCCEEEEE-ecCCchHHHHHHHC-CCC-ccCCCCCCcccccCEEEEec
Q psy1437 119 ITFIDKDGKRREIK-GKVGDNVLYLAHRY-EIP-MEGACEASLACTTCHVYVKH 169 (232)
Q Consensus 119 Vt~~~~~G~~~~v~-~~~G~tLL~aa~~~-gi~-l~~~CgG~G~CgtC~v~v~~ 169 (232)
|+|. .+|+.+++. +.+..|||+-++.+ ++- -...|+ .|-||.|-|-|..
T Consensus 10 l~F~-vNG~~v~~~~~~p~~tLl~~LR~~~~ltGTK~gC~-EG~CGACtV~v~~ 61 (1335)
T 3zyv_A 10 LIFF-VNGKKVTERNADPEVNLLFYLRKVIRLTGTKYGCG-GGDCGACTVMISR 61 (1335)
T ss_dssp EEEE-ETTEEEEESSCCTTCBHHHHHHHTTCCTTSCCSCS-SSSSCTTEEEEEE
T ss_pred EEEE-ECCEEEEeCCCCcCccHHHHHhccCCCcccccccC-CCCCcceEEEEee
Confidence 6665 688875553 67899999999984 664 567998 7999999999974
No 71
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=84.14 E-value=5.4 Score=35.93 Aligned_cols=63 Identities=11% Similarity=-0.167 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHhccCChHHHHHHHH------------HHHHHHHHHHHHHHH
Q psy1437 7 VINAAQMAVKFDEENQDEIAAYYYQAAARFLLETANSSSDENVAAWRQ------------KAQQYLNRAEVLKDK 69 (232)
Q Consensus 7 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~e~~~~~~~~~~~------------k~~eY~~RaE~lk~~ 69 (232)
|..+-..|..+...|+|++|+.+|+++++.+...+-+..+..-..+.+ .+..|++||-.+.+.
T Consensus 329 ~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~ 403 (429)
T 3qwp_A 329 LKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRV 403 (429)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 445566777788999999999999999998888764445665444433 355555665555544
No 72
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=83.75 E-value=1 Score=35.58 Aligned_cols=68 Identities=16% Similarity=0.193 Sum_probs=38.6
Q ss_pred chHHHHHHHHHHHHhhhhcC-----H--------------HHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH
Q psy1437 3 LPEEVINAAQMAVKFDEENQ-----D--------------EIAAYYYQAAARFLLETANSSSDENVAAWRQKAQQYLNRA 63 (232)
Q Consensus 3 ~~~~A~~~~~~Av~~D~~g~-----~--------------~~A~~~Y~~ai~~l~~~~~e~~~~~~~~~~~k~~eY~~Ra 63 (232)
+.++||...++|+++|-..- . .+|...|.+|+++|.+++.. +|.. ..-.+..+...+|
T Consensus 61 ~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l-~P~~--~~y~~al~~~~ka 137 (158)
T 1zu2_A 61 MIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE-QPDN--THYLKSLEMTAKA 137 (158)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH-CTTC--HHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh-CCCC--HHHHHHHHHHHhC
Confidence 35789999999999885432 1 12233567777777777621 2211 1223444556666
Q ss_pred HHHHHHHHHH
Q psy1437 64 EVLKDKIQVM 73 (232)
Q Consensus 64 E~lk~~~~~~ 73 (232)
-+|--.+..+
T Consensus 138 ~el~~~~~~~ 147 (158)
T 1zu2_A 138 PQLHAEAYKQ 147 (158)
T ss_dssp HHHHHHHHHS
T ss_pred HhccCccccc
Confidence 6665555433
No 73
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=83.67 E-value=1.6 Score=31.61 Aligned_cols=27 Identities=15% Similarity=0.077 Sum_probs=19.6
Q ss_pred HHHHHHhhhhcCHHHHHHHHHHHHHHH
Q psy1437 11 AQMAVKFDEENQDEIAAYYYQAAARFL 37 (232)
Q Consensus 11 ~~~Av~~D~~g~~~~A~~~Y~~ai~~l 37 (232)
..+|.-+-..|+|++|+.+|.+|+++-
T Consensus 46 ~nlg~~~~~~~~~~~A~~~~~~al~~~ 72 (127)
T 4gcn_A 46 NNKAAVYFEEKKFAECVQFCEKAVEVG 72 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 344444556799999999999988753
No 74
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=83.27 E-value=1.9 Score=39.81 Aligned_cols=56 Identities=4% Similarity=-0.184 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Q psy1437 4 PEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETANSSSDENVAAWRQKAQQY 59 (232)
Q Consensus 4 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~e~~~~~~~~~~~k~~eY 59 (232)
++.+..++.+|..+-.+|+|++|+.+|+++++....++-...+.....+.+-..-|
T Consensus 306 l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y 361 (490)
T 3n71_A 306 IQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVL 361 (490)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 44566677888889999999999999999998877766445666655555544333
No 75
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=83.10 E-value=4 Score=30.20 Aligned_cols=25 Identities=12% Similarity=-0.113 Sum_probs=11.6
Q ss_pred HHHHHHHhhhhcCHHHHHHHHHHHH
Q psy1437 10 AAQMAVKFDEENQDEIAAYYYQAAA 34 (232)
Q Consensus 10 ~~~~Av~~D~~g~~~~A~~~Y~~ai 34 (232)
+..+|.-+-..|+|++|+.+|.+|+
T Consensus 66 ~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 66 YANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3344444444444444444444444
No 76
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=82.31 E-value=1.9 Score=31.35 Aligned_cols=32 Identities=13% Similarity=0.074 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHH
Q psy1437 5 EEVINAAQMAVKFDEENQDEIAAYYYQAAARF 36 (232)
Q Consensus 5 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 36 (232)
+.|-.+-.++..+=+.|+|++|+.+|.+|+++
T Consensus 11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~ 42 (126)
T 4gco_A 11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR 42 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45666677888889999999999999999853
No 77
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=81.69 E-value=2.1 Score=32.63 Aligned_cols=27 Identities=15% Similarity=0.174 Sum_probs=15.5
Q ss_pred HHHHHHHHhhhhcCHHHHHHHHHHHHH
Q psy1437 9 NAAQMAVKFDEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 9 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 35 (232)
.+...|..+-+.|+|++|+.+|+++++
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~ 64 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCI 64 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555555666666666666665553
No 78
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=81.63 E-value=3.3 Score=34.15 Aligned_cols=67 Identities=9% Similarity=0.006 Sum_probs=41.1
Q ss_pred HHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHhccCChHH----H-HHH-----HHHH-HHHHHHHHHHHHHHHHHH
Q psy1437 8 INAAQMAVKFDEENQDEIAAYYYQAAARFLLETANSSSDEN----V-AAW-----RQKA-QQYLNRAEVLKDKIQVMF 74 (232)
Q Consensus 8 ~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~e~~~~~----~-~~~-----~~k~-~eY~~RaE~lk~~~~~~~ 74 (232)
..+...|.-+-..|+|++|+.+|++|+++....-....-.. . ..+ -+++ .+|+++|-.+-+.+....
T Consensus 197 ~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~~~ 274 (293)
T 2qfc_A 197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHA 274 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCcHh
Confidence 34567788899999999999999999987643100000000 0 001 1234 777888877776664443
No 79
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=81.11 E-value=2.3 Score=30.00 Aligned_cols=30 Identities=10% Similarity=0.002 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHH
Q psy1437 6 EVINAAQMAVKFDEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 6 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 35 (232)
.|..+..+|..+-..|+|++|+.+|.+|++
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~ 32 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIK 32 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 344555556666666666666666666554
No 80
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=80.34 E-value=2.9 Score=30.56 Aligned_cols=34 Identities=12% Similarity=0.101 Sum_probs=27.9
Q ss_pred CCceeEEEEEeCCCCE--EEEEecCCchHHHHHHHCC
Q psy1437 113 EDEIVNITFIDKDGKR--REIKGKVGDNVLYLAHRYE 147 (232)
Q Consensus 113 ~~~mv~Vt~~~~~G~~--~~v~~~~G~tLL~aa~~~g 147 (232)
..+.++|+|++.+|.. ..|. ..|++|++++.++.
T Consensus 5 g~k~i~i~v~~~~~~~~~~~v~-t~g~tL~dvLk~~~ 40 (101)
T 3u7z_A 5 GEKHITVTVIHGDQTENVFEFD-TDAKYLGEVLESEN 40 (101)
T ss_dssp CCEEEEEEEECTTSCEEEEEEE-ECCSBHHHHHHHTT
T ss_pred ceeEEEEEEEcCCCceeEEEEc-CCccHHHHHHHHcC
Confidence 3556999999888865 4566 88999999999988
No 81
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=80.16 E-value=2.8 Score=29.46 Aligned_cols=26 Identities=12% Similarity=-0.155 Sum_probs=18.9
Q ss_pred HHHHHHhhhhcCHHHHHHHHHHHHHH
Q psy1437 11 AQMAVKFDEENQDEIAAYYYQAAARF 36 (232)
Q Consensus 11 ~~~Av~~D~~g~~~~A~~~Y~~ai~~ 36 (232)
..+|.-+-..|+|++|+.+|.+|+++
T Consensus 42 ~~~a~~~~~~~~~~~A~~~~~~al~~ 67 (126)
T 3upv_A 42 SNRAAALAKLMSFPEAIADCNKAIEK 67 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34444555888999999888888763
No 82
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=79.68 E-value=2.4 Score=28.64 Aligned_cols=30 Identities=7% Similarity=-0.013 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHH
Q psy1437 6 EVINAAQMAVKFDEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 6 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 35 (232)
.+-.+...|..+-..|+|++|+.+|.+|++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 32 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLIT 32 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455566777777788888888888888775
No 83
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=79.26 E-value=2.5 Score=30.41 Aligned_cols=38 Identities=16% Similarity=0.170 Sum_probs=30.2
Q ss_pred CCceeEEEEEeCCCCEEEEEecCCchHHHH----HHHCCCCc
Q psy1437 113 EDEIVNITFIDKDGKRREIKGKVGDNVLYL----AHRYEIPM 150 (232)
Q Consensus 113 ~~~mv~Vt~~~~~G~~~~v~~~~G~tLL~a----a~~~gi~l 150 (232)
+.+|+.|.+.++.|+...|.+.+.+|+.+. +.+.|++.
T Consensus 18 ~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~ 59 (93)
T 3plu_A 18 GSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQP 59 (93)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCG
T ss_pred CCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCH
Confidence 478999999999999999999999999863 44566654
No 84
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=79.14 E-value=2.9 Score=31.09 Aligned_cols=17 Identities=29% Similarity=0.077 Sum_probs=11.2
Q ss_pred hhcCHHHHHHHHHHHHH
Q psy1437 19 EENQDEIAAYYYQAAAR 35 (232)
Q Consensus 19 ~~g~~~~A~~~Y~~ai~ 35 (232)
..|+|++|+.+|.+|++
T Consensus 57 ~~g~~~~A~~~~~~al~ 73 (164)
T 3sz7_A 57 ASGQHEKAAEDAELATV 73 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 45777777777766664
No 85
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=78.77 E-value=3.3 Score=29.68 Aligned_cols=32 Identities=16% Similarity=0.085 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHhhh---------------hcCHHHHHHHHHHHHH
Q psy1437 4 PEEVINAAQMAVKFDE---------------ENQDEIAAYYYQAAAR 35 (232)
Q Consensus 4 ~~~A~~~~~~Av~~D~---------------~g~~~~A~~~Y~~ai~ 35 (232)
.+.|+...++|++.|. .|++++|+.+|++|++
T Consensus 33 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 79 (121)
T 1hxi_A 33 LAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARM 79 (121)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455555555555543 4555555555555543
No 86
>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C amphipathic-helix, apoptosis, HOST-virus interaction, protein transport, transport; 2.02A {Homo sapiens} PDB: 2oew_A 3c3o_A 3c3q_A
Probab=78.46 E-value=5 Score=35.81 Aligned_cols=63 Identities=16% Similarity=0.091 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHhc-cCChHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 6 EVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETAN-SSSDENVAAWRQKAQQYLNRAEVLKD 68 (232)
Q Consensus 6 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~-e~~~~~~~~~~~k~~eY~~RaE~lk~ 68 (232)
.|+..-..|..++.+++|.+|+.+++.|.+.|..+.. .+.......+.+++..-+++||+-=+
T Consensus 274 ~A~A~y~~a~~~~e~~k~GeaIa~L~~A~~~l~~a~~~~~~~~~l~~l~~~i~~~l~~a~kdNd 337 (380)
T 3c3r_A 274 QANAEYHQSILAKQQKKFGEEIARLQHAAELIKTVASRYDEYVNVKDFSDKINRALAAAKKDND 337 (380)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhcchHhHHHHHHHHHHHHHHHHHhhC
Confidence 4555666799999999999999999999999888762 12211223355566655555544333
No 87
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=78.15 E-value=6.8 Score=33.98 Aligned_cols=59 Identities=14% Similarity=0.244 Sum_probs=37.7
Q ss_pred HHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh-ccCChHHHHHH------------HHHHHHHHHHHHHHHH
Q psy1437 10 AAQMAVKFDEENQDEIAAYYYQAAARFLLETA-NSSSDENVAAW------------RQKAQQYLNRAEVLKD 68 (232)
Q Consensus 10 ~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~-~e~~~~~~~~~------------~~k~~eY~~RaE~lk~ 68 (232)
+-..|.-.-..|+|++|+.+|++|++++.... .+.++.....+ -.++.+|.++|.+|..
T Consensus 54 yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~ 125 (472)
T 4g1t_A 54 CNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCE 125 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhH
Confidence 34567777889999999999999999876543 12222222111 1346667777766644
No 88
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=77.62 E-value=3.5 Score=30.65 Aligned_cols=32 Identities=9% Similarity=0.053 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHhh---------------hhcCHHHHHHHHHHHHH
Q psy1437 4 PEEVINAAQMAVKFD---------------EENQDEIAAYYYQAAAR 35 (232)
Q Consensus 4 ~~~A~~~~~~Av~~D---------------~~g~~~~A~~~Y~~ai~ 35 (232)
.++|++..++|++.| ..|++++|+.+|++|++
T Consensus 47 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~ 93 (150)
T 4ga2_A 47 YDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVE 93 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 455666666666554 34666666666666654
No 89
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=77.28 E-value=3.9 Score=27.16 Aligned_cols=18 Identities=6% Similarity=-0.029 Sum_probs=8.0
Q ss_pred hhhhcCHHHHHHHHHHHH
Q psy1437 17 FDEENQDEIAAYYYQAAA 34 (232)
Q Consensus 17 ~D~~g~~~~A~~~Y~~ai 34 (232)
+-..|+|++|+.+|.+++
T Consensus 16 ~~~~~~~~~A~~~~~~a~ 33 (112)
T 2kck_A 16 QYDAGNYTESIDLFEKAI 33 (112)
T ss_dssp HHSSCCHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHH
Confidence 334444444444444444
No 90
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=77.17 E-value=15 Score=25.14 Aligned_cols=24 Identities=21% Similarity=0.171 Sum_probs=14.4
Q ss_pred HHHHHhhhhcCHHHHHHHHHHHHH
Q psy1437 12 QMAVKFDEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 12 ~~Av~~D~~g~~~~A~~~Y~~ai~ 35 (232)
..|.-+-..|+|++|+.+|++|++
T Consensus 24 ~lg~~~~~~g~~~~A~~~~~~al~ 47 (115)
T 2kat_A 24 TLGKTYAEHEQFDAALPHLRAALD 47 (115)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 344444556667776666666664
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=77.16 E-value=3.4 Score=34.23 Aligned_cols=24 Identities=13% Similarity=0.036 Sum_probs=13.9
Q ss_pred HHHhhhhcCHHHHHHHHHHHHHHH
Q psy1437 14 AVKFDEENQDEIAAYYYQAAARFL 37 (232)
Q Consensus 14 Av~~D~~g~~~~A~~~Y~~ai~~l 37 (232)
+.-+...|+|++|+.+|.+|+++.
T Consensus 84 g~~~~~~g~~~~A~~~~~~Al~l~ 107 (292)
T 1qqe_A 84 YKCFKSGGNSVNAVDSLENAIQIF 107 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHH
Confidence 333445566666666666666544
No 92
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=76.69 E-value=3.9 Score=26.42 Aligned_cols=32 Identities=16% Similarity=0.188 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHH
Q psy1437 5 EEVINAAQMAVKFDEENQDEIAAYYYQAAARF 36 (232)
Q Consensus 5 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 36 (232)
..+..+...|..+-..|+|++|+.+|.+|++.
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 38 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 38 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44566677888888999999999999998863
No 93
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=76.54 E-value=4.7 Score=28.16 Aligned_cols=18 Identities=22% Similarity=0.266 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHhhhhc
Q psy1437 4 PEEVINAAQMAVKFDEEN 21 (232)
Q Consensus 4 ~~~A~~~~~~Av~~D~~g 21 (232)
..+|..+.++|.+.|...
T Consensus 25 ~~~A~~~l~~AL~~dp~~ 42 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPYN 42 (93)
T ss_dssp CHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHCcCC
Confidence 467888888888887543
No 94
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=76.38 E-value=4.8 Score=25.96 Aligned_cols=17 Identities=29% Similarity=0.251 Sum_probs=11.2
Q ss_pred chHHHHHHHHHHHHhhh
Q psy1437 3 LPEEVINAAQMAVKFDE 19 (232)
Q Consensus 3 ~~~~A~~~~~~Av~~D~ 19 (232)
-.++|+...++|++.+.
T Consensus 24 ~~~~A~~~~~~a~~~~~ 40 (91)
T 1na3_A 24 DYDEAIEYYQKALELDP 40 (91)
T ss_dssp CHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHhcCC
Confidence 35667777777776653
No 95
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=74.32 E-value=4.8 Score=29.04 Aligned_cols=41 Identities=20% Similarity=0.254 Sum_probs=29.4
Q ss_pred eeEEEEEeCCCCEEEEEecCCchHHHHHHH----CCCCccCCCCCCcccccCEEEEe
Q psy1437 116 IVNITFIDKDGKRREIKGKVGDNVLYLAHR----YEIPMEGACEASLACTTCHVYVK 168 (232)
Q Consensus 116 mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~----~gi~l~~~CgG~G~CgtC~v~v~ 168 (232)
++.|. .|+++...|++.+|.||-+|+.+ -|+ .+-.|.|...
T Consensus 19 ~irvh--LPNqQrT~V~VrpG~tlrdAL~KaLk~R~L----------~pe~C~Vy~~ 63 (95)
T 2l05_A 19 IVRVF--LPNKQRTVVPARCGVTVRDSLKKALMMRGL----------IPECCAVYRI 63 (95)
T ss_dssp EEEEE--ETTTEEEEEECCTTCBHHHHHHHHHHHHTC----------CGGGEEEEEE
T ss_pred EEEEE--CCCCCeEEEEecCCcCHHHHHHHHHHHcCC----------CHHHcEEEEc
Confidence 44444 49998888999999999887654 344 4456777655
No 96
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=73.55 E-value=5.1 Score=29.71 Aligned_cols=17 Identities=24% Similarity=0.159 Sum_probs=10.4
Q ss_pred hhcCHHHHHHHHHHHHH
Q psy1437 19 EENQDEIAAYYYQAAAR 35 (232)
Q Consensus 19 ~~g~~~~A~~~Y~~ai~ 35 (232)
..|+|++|+.+|.+|++
T Consensus 67 ~~g~~~~A~~~~~~al~ 83 (148)
T 2vgx_A 67 AMGQYDLAIHSYSYGAV 83 (148)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHh
Confidence 44666666666666653
No 97
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=73.29 E-value=20 Score=24.82 Aligned_cols=18 Identities=22% Similarity=-0.038 Sum_probs=11.1
Q ss_pred hhhcCHHHHHHHHHHHHH
Q psy1437 18 DEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 18 D~~g~~~~A~~~Y~~ai~ 35 (232)
-..|+|++|+.+|.+|++
T Consensus 54 ~~~~~~~~A~~~~~~al~ 71 (137)
T 3q49_B 54 LKMQQPEQALADCRRALE 71 (137)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHH
Confidence 356666666666666654
No 98
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=73.17 E-value=4.8 Score=29.83 Aligned_cols=31 Identities=13% Similarity=-0.063 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhhhhcCHHHHHHHHHHHHH
Q psy1437 5 EEVINAAQMAVKFDEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 5 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 35 (232)
..+..+...|..+-..|+|++|+.+|.+|++
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~ 39 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALS 39 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4556666777777777777777777777765
No 99
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=73.05 E-value=3.3 Score=30.77 Aligned_cols=32 Identities=19% Similarity=0.143 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHhh---------------hhcCHHHHHHHHHHHHH
Q psy1437 4 PEEVINAAQMAVKFD---------------EENQDEIAAYYYQAAAR 35 (232)
Q Consensus 4 ~~~A~~~~~~Av~~D---------------~~g~~~~A~~~Y~~ai~ 35 (232)
.++||+..++|+..+ +.|+|++|+.+|++|++
T Consensus 13 ~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~ 59 (150)
T 4ga2_A 13 VERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN 59 (150)
T ss_dssp HHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456777777666654 45788888888887775
No 100
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=72.88 E-value=11 Score=32.82 Aligned_cols=35 Identities=14% Similarity=0.106 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHH
Q psy1437 5 EEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLE 39 (232)
Q Consensus 5 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~ 39 (232)
+.|..+...|..+-+.|+|++|+.+|++|++++-.
T Consensus 221 ~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~ 255 (370)
T 1ihg_A 221 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEG 255 (370)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence 45666788999999999999999999999986654
No 101
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=72.85 E-value=3.7 Score=30.78 Aligned_cols=30 Identities=10% Similarity=-0.015 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHH
Q psy1437 6 EVINAAQMAVKFDEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 6 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 35 (232)
.+.-+...|..+-..|+|++|+.+|++|++
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~ 33 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK 33 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344556677777778888888888888775
No 102
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=72.45 E-value=6.5 Score=27.39 Aligned_cols=31 Identities=6% Similarity=-0.088 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHHH
Q psy1437 6 EVINAAQMAVKFDEENQDEIAAYYYQAAARF 36 (232)
Q Consensus 6 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 36 (232)
.+.-+...|.-+-..|+|++|+.+|.+|++.
T Consensus 26 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 56 (117)
T 3k9i_A 26 LAECYLGLGSTFRTLGEYRKAEAVLANGVKQ 56 (117)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3444566777778889999999999888764
No 103
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=72.34 E-value=4.9 Score=26.96 Aligned_cols=17 Identities=12% Similarity=0.151 Sum_probs=12.3
Q ss_pred chHHHHHHHHHHHHhhh
Q psy1437 3 LPEEVINAAQMAVKFDE 19 (232)
Q Consensus 3 ~~~~A~~~~~~Av~~D~ 19 (232)
-.++|+...++|++.+.
T Consensus 19 ~~~~A~~~~~~al~~~p 35 (111)
T 2l6j_A 19 LYREAVHCYDQLITAQP 35 (111)
T ss_dssp CHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHhcCC
Confidence 35678888888877764
No 104
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=72.14 E-value=4.1 Score=28.88 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=30.5
Q ss_pred CceeEEEEEeCCCCEEEEEecCCchHHHHHHH----CCCCccCCCCCCcccccCEEEEe
Q psy1437 114 DEIVNITFIDKDGKRREIKGKVGDNVLYLAHR----YEIPMEGACEASLACTTCHVYVK 168 (232)
Q Consensus 114 ~~mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~----~gi~l~~~CgG~G~CgtC~v~v~ 168 (232)
..++.|. .|+++...|++.+|.||-+|+.+ -++ .+-.|.|...
T Consensus 7 ~~~irvh--LPn~QrT~V~VrpG~tlrdaL~KaLk~R~L----------~pe~C~Vy~~ 53 (86)
T 1wxm_A 7 GGTVKVY--LPNKQRTVVTVRDGMSVYDSLDKALKVRGL----------NQDCCVVYRL 53 (86)
T ss_dssp SSEEEEE--CSSSCEEEEECCSSCBSHHHHHHHHHTTTC----------CSSSEEEEEE
T ss_pred cceEEEE--CCCCCeEEEEecCCcCHHHHHHHHHHHcCC----------CHHHeEEEEc
Confidence 3455555 49998888999999999887654 344 3456777765
No 105
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=71.61 E-value=8.2 Score=35.93 Aligned_cols=28 Identities=21% Similarity=0.076 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHhccCChHHHHH
Q psy1437 24 EIAAYYYQAAARFLLETANSSSDENVAA 51 (232)
Q Consensus 24 ~~A~~~Y~~ai~~l~~~~~e~~~~~~~~ 51 (232)
+.|+.+|++||++|.++....++.....
T Consensus 449 ~kAi~~Y~~Ai~~L~k~~~tdd~~~v~~ 476 (526)
T 2wb7_A 449 QGAIDEYKAAINDLQKAAQQDDYQMFLN 476 (526)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccCCHHHHHH
Confidence 5789999999999998874445544433
No 106
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=70.24 E-value=26 Score=27.02 Aligned_cols=15 Identities=20% Similarity=0.222 Sum_probs=7.1
Q ss_pred hcCHHHHHHHHHHHH
Q psy1437 20 ENQDEIAAYYYQAAA 34 (232)
Q Consensus 20 ~g~~~~A~~~Y~~ai 34 (232)
.|+|++|+.+|.+++
T Consensus 101 ~g~~~~A~~~~~~al 115 (208)
T 3urz_A 101 RGQEKDALRMYEKIL 115 (208)
T ss_dssp HTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 344444444444444
No 107
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=69.56 E-value=6.3 Score=26.25 Aligned_cols=30 Identities=17% Similarity=0.035 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHH
Q psy1437 6 EVINAAQMAVKFDEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 6 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 35 (232)
.+-.+...|..+-..|+|++|+.+|.++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 32 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIK 32 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 445566667777777888888877777765
No 108
>3rau_A Tyrosine-protein phosphatase non-receptor type 23; BRO1 domain, hydrolase; 1.95A {Homo sapiens}
Probab=69.49 E-value=27 Score=30.82 Aligned_cols=37 Identities=19% Similarity=0.213 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHhc
Q psy1437 6 EVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETAN 42 (232)
Q Consensus 6 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~ 42 (232)
.|+..-..|...+.+++|.+|+.+++.|.+.+..+..
T Consensus 251 ~A~A~y~~a~~~~e~~k~GeaIa~L~~A~~~l~~a~~ 287 (363)
T 3rau_A 251 AAVAHLHMGKQAEEQQKFGERVAYFQSALDKLNEAIK 287 (363)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4666667888999999999999999999999988873
No 109
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=69.48 E-value=3.6 Score=29.45 Aligned_cols=19 Identities=21% Similarity=0.022 Sum_probs=14.1
Q ss_pred CchHHHHHHHHHHHHhhhh
Q psy1437 2 GLPEEVINAAQMAVKFDEE 20 (232)
Q Consensus 2 ~~~~~A~~~~~~Av~~D~~ 20 (232)
+-.++|+...++|++.|-.
T Consensus 65 g~~~~A~~~~~~al~l~P~ 83 (121)
T 1hxi_A 65 EKDGLAIIALNHARMLDPK 83 (121)
T ss_dssp TCHHHHHHHHHHHHHHCTT
T ss_pred CCHHHHHHHHHHHHHhCCC
Confidence 3467788888888888753
No 110
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=69.35 E-value=6.2 Score=28.65 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=31.6
Q ss_pred CCceeEEEEEeCCCCEEEEEecCCchHHHH----HHHCCCCcc
Q psy1437 113 EDEIVNITFIDKDGKRREIKGKVGDNVLYL----AHRYEIPME 151 (232)
Q Consensus 113 ~~~mv~Vt~~~~~G~~~~v~~~~G~tLL~a----a~~~gi~l~ 151 (232)
..+|+.|+|.+..|+.+++++.+.+|+.++ +...|++..
T Consensus 25 ~~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~ 67 (100)
T 1uh6_A 25 AATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWN 67 (100)
T ss_dssp CCCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGG
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHH
Confidence 567899999988899899999999998763 456677654
No 111
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=69.08 E-value=8.3 Score=26.10 Aligned_cols=24 Identities=17% Similarity=0.059 Sum_probs=10.4
Q ss_pred HHHHHHhhhhcCHHHHHHHHHHHH
Q psy1437 11 AQMAVKFDEENQDEIAAYYYQAAA 34 (232)
Q Consensus 11 ~~~Av~~D~~g~~~~A~~~Y~~ai 34 (232)
...|..+-..|+|++|+.+|.+++
T Consensus 16 ~~~~~~~~~~~~~~~A~~~~~~~~ 39 (131)
T 2vyi_A 16 KTEGNEQMKVENFEAAVHFYGKAI 39 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHH
Confidence 334444444444444444444443
No 112
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=68.64 E-value=6.9 Score=30.75 Aligned_cols=22 Identities=9% Similarity=0.061 Sum_probs=16.9
Q ss_pred HHhhhhcCHHHHHHHHHHHHHH
Q psy1437 15 VKFDEENQDEIAAYYYQAAARF 36 (232)
Q Consensus 15 v~~D~~g~~~~A~~~Y~~ai~~ 36 (232)
.-+-..|++++|+.+|++|++.
T Consensus 126 ~~~~~~g~~~~A~~~~~~al~~ 147 (217)
T 2pl2_A 126 LVYALLGERDKAEASLKQALAL 147 (217)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhc
Confidence 3344888999999999888764
No 113
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=68.24 E-value=8.8 Score=26.05 Aligned_cols=16 Identities=6% Similarity=-0.029 Sum_probs=7.7
Q ss_pred hcCHHHHHHHHHHHHH
Q psy1437 20 ENQDEIAAYYYQAAAR 35 (232)
Q Consensus 20 ~g~~~~A~~~Y~~ai~ 35 (232)
.|+|++|+.+|.++++
T Consensus 51 ~~~~~~A~~~~~~~~~ 66 (131)
T 1elr_A 51 KGDYNKCRELCEKAIE 66 (131)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHh
Confidence 3444555555544443
No 114
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=67.79 E-value=5.3 Score=31.42 Aligned_cols=15 Identities=7% Similarity=-0.318 Sum_probs=7.4
Q ss_pred hcCHHHHHHHHHHHH
Q psy1437 20 ENQDEIAAYYYQAAA 34 (232)
Q Consensus 20 ~g~~~~A~~~Y~~ai 34 (232)
.|++++|+.+|++|+
T Consensus 52 ~g~~~~A~~~~~~al 66 (217)
T 2pl2_A 52 LGLVNPALENGKTLV 66 (217)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 455555555444444
No 115
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=67.51 E-value=30 Score=26.73 Aligned_cols=34 Identities=12% Similarity=0.072 Sum_probs=25.0
Q ss_pred HHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh
Q psy1437 8 INAAQMAVKFDEENQDEIAAYYYQAAARFLLETA 41 (232)
Q Consensus 8 ~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~ 41 (232)
..+...|.-+-..|+|++|+.+|.+|++++....
T Consensus 86 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 119 (283)
T 3edt_B 86 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 119 (283)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHc
Confidence 3344555566678999999999999998865543
No 116
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=67.49 E-value=7.9 Score=29.56 Aligned_cols=26 Identities=8% Similarity=0.042 Sum_probs=14.8
Q ss_pred HHHHHHHhhhhcCHHHHHHHHHHHHH
Q psy1437 10 AAQMAVKFDEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 10 ~~~~Av~~D~~g~~~~A~~~Y~~ai~ 35 (232)
+...|.-+-..|+|++|+.+|.+|++
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34455555556666666666665554
No 117
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=67.21 E-value=6.2 Score=30.18 Aligned_cols=31 Identities=16% Similarity=0.180 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhhhhcCHHHHHHHHHHHHH
Q psy1437 5 EEVINAAQMAVKFDEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 5 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 35 (232)
..+..+...|..+-..|+|++|+.+|.+|++
T Consensus 36 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 66 (198)
T 2fbn_A 36 QSAFDIKEEGNEFFKKNEINEAIVKYKEALD 66 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4567778899999999999999999999986
No 118
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=65.85 E-value=6.6 Score=26.82 Aligned_cols=35 Identities=11% Similarity=0.073 Sum_probs=24.5
Q ss_pred CchHHHHHHHHHHHHhh---------------hhcCHHHHHHHHHHHHHH
Q psy1437 2 GLPEEVINAAQMAVKFD---------------EENQDEIAAYYYQAAARF 36 (232)
Q Consensus 2 ~~~~~A~~~~~~Av~~D---------------~~g~~~~A~~~Y~~ai~~ 36 (232)
+-.++|+...++|++.| ..|++++|+.+|++|+++
T Consensus 21 g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 21 DNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34567777777777766 557777777777777754
No 119
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=65.83 E-value=6.5 Score=37.98 Aligned_cols=34 Identities=18% Similarity=0.170 Sum_probs=21.1
Q ss_pred CchHHHHHHHHHHHHhhh---------------hcCHHHHHHHHHHHHH
Q psy1437 2 GLPEEVINAAQMAVKFDE---------------ENQDEIAAYYYQAAAR 35 (232)
Q Consensus 2 ~~~~~A~~~~~~Av~~D~---------------~g~~~~A~~~Y~~ai~ 35 (232)
+-.++|+...++|+++|- .|+|++|+.+|++|++
T Consensus 57 g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~ 105 (723)
T 4gyw_A 57 GKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQ 105 (723)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345666677777776663 3566666666666664
No 120
>1ug7_A 2610208M17RIK protein; hypothetical protein FLJ12806, four helical UP-and-DOWN bundle, structural genomics; NMR {Mus musculus} SCOP: a.24.24.1
Probab=65.79 E-value=41 Score=25.40 Aligned_cols=58 Identities=24% Similarity=0.164 Sum_probs=38.6
Q ss_pred HHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHhccCC------hHHHHHHHHHHHHHHHHHHHH
Q psy1437 9 NAAQMAVKFDEENQDEIAAYYYQAAARFLLETANSSS------DENVAAWRQKAQQYLNRAEVL 66 (232)
Q Consensus 9 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~e~~------~~~~~~~~~k~~eY~~RaE~l 66 (232)
...++|+.+|.=|+.-||+.=|+.=...|.......+ +..++.|..-+.----|++.|
T Consensus 21 ~sl~Ka~dfDsWGQvvEA~deY~~La~~lkk~~~s~~~~~~fte~qkk~i~KiatcL~lRsk~L 84 (128)
T 1ug7_A 21 ASLRRGADFDSWGQLVEAIDEYQILARHLQKEAQAQHNNSEFTEEQKKTIGKIATCLELRSAAL 84 (128)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTCSSSCCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999986666666552121 344444443333333477777
No 121
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=65.67 E-value=9.3 Score=29.84 Aligned_cols=50 Identities=12% Similarity=0.014 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH
Q psy1437 7 VINAAQMAVKFDEENQDEIAAYYYQAAARFLLETANSSSDENVAAWRQKAQQYLNRAE 64 (232)
Q Consensus 7 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~e~~~~~~~~~~~k~~eY~~RaE 64 (232)
|.=+..=|.-++..|+|++|-..|+.||+. .....+.++++..++..|..
T Consensus 101 AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~--------~A~P~~rL~~~~~~F~~R~~ 150 (152)
T 4a1g_A 101 SPLYIAWAGHLEAQGELQHASAVLQRGIQN--------QAEPREFLQQQYRLFQTRLT 150 (152)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------TCBSHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCccHHHHHHHHHHHHHHhc
Confidence 445566788999999999999999999962 23334568999999988854
No 122
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=65.48 E-value=5.7 Score=26.29 Aligned_cols=33 Identities=21% Similarity=0.203 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHhh---------------hhcCHHHHHHHHHHHHHH
Q psy1437 4 PEEVINAAQMAVKFD---------------EENQDEIAAYYYQAAARF 36 (232)
Q Consensus 4 ~~~A~~~~~~Av~~D---------------~~g~~~~A~~~Y~~ai~~ 36 (232)
.++|+...++|++.+ ..|+|++|+.+|+++++.
T Consensus 22 ~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 69 (112)
T 2kck_A 22 YTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINV 69 (112)
T ss_dssp HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 455666666555544 679999999999998853
No 123
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=65.17 E-value=9.6 Score=28.34 Aligned_cols=22 Identities=14% Similarity=0.261 Sum_probs=15.4
Q ss_pred HHHhhhhcCHHHHHHHHHHHHH
Q psy1437 14 AVKFDEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 14 Av~~D~~g~~~~A~~~Y~~ai~ 35 (232)
|.-+-..|+|++|+.+|+++++
T Consensus 114 g~~~~~~g~~~~A~~~~~~~l~ 135 (184)
T 3vtx_A 114 GLVYDSMGEHDKAIEAYEKTIS 135 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCchhHHHHHHHHHH
Confidence 4444556888888888888775
No 124
>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A
Probab=65.17 E-value=24 Score=31.17 Aligned_cols=36 Identities=8% Similarity=-0.030 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh
Q psy1437 6 EVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA 41 (232)
Q Consensus 6 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~ 41 (232)
.|+..-..|+.++.+++|.+|+.+++.|.+.|..+.
T Consensus 252 ~A~A~y~~a~~~~~~~k~GeaIa~L~~A~~~l~~a~ 287 (376)
T 3r9m_A 252 TAYAYCYHGETLLASDKCGEAIRSLQEAEKLYAKAE 287 (376)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHH
Confidence 366667789999999999999999999999988775
No 125
>3kdv_A DDRB, DNA damage response B protein; anti-parallel beta-barrel, pentamer, DNA binding protein; HET: DNA; 2.80A {Deinococcus geothermalis} PDB: 4exw_A
Probab=64.87 E-value=5.6 Score=31.41 Aligned_cols=33 Identities=21% Similarity=0.444 Sum_probs=30.2
Q ss_pred ceeEEEEEeCCCCEEEEEecCCchHHHHHHHCC
Q psy1437 115 EIVNITFIDKDGKRREIKGKVGDNVLYLAHRYE 147 (232)
Q Consensus 115 ~mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~g 147 (232)
.|++|.|+.+-|...+++++.++.||++++..|
T Consensus 6 tml~i~f~t~LG~~V~vdve~~~~~l~v~R~yG 38 (184)
T 3kdv_A 6 TMLHIEFITDLGAKVTVDVESADKLLDVQRQYG 38 (184)
T ss_dssp CCEEEEEECTTCCEEEEEESSGGGHHHHHHHHH
T ss_pred ceEEEEEecCCCceEEEecCCHHHHHHHHHHhh
Confidence 489999999999999999999999999999765
No 126
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=64.77 E-value=39 Score=26.06 Aligned_cols=29 Identities=21% Similarity=0.397 Sum_probs=22.0
Q ss_pred HHHHhhhhcCHHHHHHHHHHHHHHHHHHh
Q psy1437 13 MAVKFDEENQDEIAAYYYQAAARFLLETA 41 (232)
Q Consensus 13 ~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~ 41 (232)
.|.-+-..|+|++|+.+|.++++.+....
T Consensus 133 la~~~~~~g~~~~A~~~~~~al~~~~~~~ 161 (283)
T 3edt_B 133 LALLCQNQGKAEEVEYYYRRALEIYATRL 161 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 34444567999999999999998766553
No 127
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=64.44 E-value=7.3 Score=27.03 Aligned_cols=40 Identities=10% Similarity=0.146 Sum_probs=28.9
Q ss_pred eEEEEEeCCCCEEEEEecCCchHHHHHHHC----CCCccCCCCCCcccccCEEEEe
Q psy1437 117 VNITFIDKDGKRREIKGKVGDNVLYLAHRY----EIPMEGACEASLACTTCHVYVK 168 (232)
Q Consensus 117 v~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~----gi~l~~~CgG~G~CgtC~v~v~ 168 (232)
+.+. .|+++...|++.+|.||-+|+.++ |+ .+-.|.|...
T Consensus 4 irvh--LPn~QrT~V~VrpG~tlrdaL~KaLk~R~L----------~pe~C~V~~~ 47 (77)
T 1c1y_B 4 IRVF--LPNKQRTVVNVRNGMSLHDCLMKALKVRGL----------QPECCAVFRL 47 (77)
T ss_dssp EEEE--ETTTEEEEEECCTTCBHHHHHHHHHHTTTC----------CGGGEEEEEE
T ss_pred EEEE--CCCCceEEEEecCCcCHHHHHHHHHHHcCC----------CHHHeEEEEe
Confidence 4444 499988889999999998876643 44 4456777755
No 128
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=64.31 E-value=7.2 Score=25.90 Aligned_cols=24 Identities=8% Similarity=-0.057 Sum_probs=16.5
Q ss_pred HHHHHhhhhcCHHHHHHHHHHHHH
Q psy1437 12 QMAVKFDEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 12 ~~Av~~D~~g~~~~A~~~Y~~ai~ 35 (232)
.+|..+-..|+|++|+.+|+++++
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~ 28 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQ 28 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455555667777777777777764
No 129
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=63.95 E-value=17 Score=32.43 Aligned_cols=33 Identities=12% Similarity=0.103 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHH
Q psy1437 5 EEVINAAQMAVKFDEENQDEIAAYYYQAAARFL 37 (232)
Q Consensus 5 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l 37 (232)
..|..+..+|..+-+.|+|++|+.+|.+|+++.
T Consensus 266 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~ 298 (457)
T 1kt0_A 266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL 298 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 345567788999999999999999999999854
No 130
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=63.63 E-value=11 Score=27.07 Aligned_cols=30 Identities=17% Similarity=0.143 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHH
Q psy1437 6 EVINAAQMAVKFDEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 6 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 35 (232)
.+..+...|..+-..|+|++|+.+|.++++
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 41 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIE 41 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344445555555555555555555555543
No 131
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=63.46 E-value=15 Score=33.18 Aligned_cols=50 Identities=6% Similarity=-0.140 Sum_probs=33.8
Q ss_pred HHHHHHhhhhcCHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Q psy1437 11 AQMAVKFDEENQDEIAAYYYQAAARFLLETANSSSDENVAAWRQKAQQYL 60 (232)
Q Consensus 11 ~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~e~~~~~~~~~~~k~~eY~ 60 (232)
+...-...+.|+|++|+.+|+++++.....+-..++.....+.+-..-|.
T Consensus 302 le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~ 351 (433)
T 3qww_A 302 IEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCL 351 (433)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHH
Confidence 33333445678999999999999988777664456666655555444443
No 132
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=63.36 E-value=9.7 Score=26.06 Aligned_cols=25 Identities=12% Similarity=-0.011 Sum_probs=10.8
Q ss_pred HHHHHHHhhhhcCHHHHHHHHHHHH
Q psy1437 10 AAQMAVKFDEENQDEIAAYYYQAAA 34 (232)
Q Consensus 10 ~~~~Av~~D~~g~~~~A~~~Y~~ai 34 (232)
+...|..+-..|+|++|+.+|.+++
T Consensus 19 ~~~~~~~~~~~~~~~~A~~~~~~al 43 (133)
T 2lni_A 19 VKNKGNECFQKGDYPQAMKHYTEAI 43 (133)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3334444444444444444444443
No 133
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae}
Probab=62.50 E-value=21 Score=31.71 Aligned_cols=36 Identities=17% Similarity=0.229 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh
Q psy1437 6 EVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA 41 (232)
Q Consensus 6 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~ 41 (232)
.|+..-..|..++.+++|.+|+-+++.|.+.|..+.
T Consensus 256 ~A~A~y~~a~~~~e~~k~GeaIa~L~~A~~~l~~a~ 291 (392)
T 1zb1_A 256 KSLSAYYHGLHLEEENRVGEAIAFLDFSMQQLISSL 291 (392)
T ss_dssp HHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHH
Confidence 455666779999999999999999999999998887
No 134
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=62.24 E-value=14 Score=24.45 Aligned_cols=32 Identities=13% Similarity=0.076 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHhh---------------hhcCHHHHHHHHHHHHH
Q psy1437 4 PEEVINAAQMAVKFD---------------EENQDEIAAYYYQAAAR 35 (232)
Q Consensus 4 ~~~A~~~~~~Av~~D---------------~~g~~~~A~~~Y~~ai~ 35 (232)
.++|+.+.++|++.+ ..|+|++|+.+|.++++
T Consensus 20 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 66 (118)
T 1elw_A 20 IDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD 66 (118)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 456666666666654 34666666666666554
No 135
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=62.22 E-value=12 Score=25.26 Aligned_cols=31 Identities=10% Similarity=0.158 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHHH
Q psy1437 6 EVINAAQMAVKFDEENQDEIAAYYYQAAARF 36 (232)
Q Consensus 6 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 36 (232)
.+-.+...|..+-..|+|++|+.+|.++++.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 33 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKEL 33 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 3455666777777888888888888887753
No 136
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=62.14 E-value=21 Score=29.22 Aligned_cols=51 Identities=10% Similarity=0.016 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH
Q psy1437 7 VINAAQMAVKFDEENQDEIAAYYYQAAARFLLETANSSSDENVAAWRQKAQQYLNRAEV 65 (232)
Q Consensus 7 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~e~~~~~~~~~~~k~~eY~~RaE~ 65 (232)
|.=+..=|.-++..|+|++|-..|+.||+ . .....+.++++..++..|...
T Consensus 115 AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~------~--~A~P~~rL~~~~~~F~~R~~~ 165 (202)
T 3esl_A 115 SLFYEEFSKLLENAQFFLEAKVLLELGAE------N--NCRPYNRLLRSLSNYEDRLRE 165 (202)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------T--TCBSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH------c--CCccHHHHHHHHHHHHHHHHh
Confidence 44556678899999999999999999996 2 223345689999999988543
No 137
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=61.78 E-value=13 Score=26.61 Aligned_cols=14 Identities=14% Similarity=-0.296 Sum_probs=6.1
Q ss_pred cCHHHHHHHHHHHH
Q psy1437 21 NQDEIAAYYYQAAA 34 (232)
Q Consensus 21 g~~~~A~~~Y~~ai 34 (232)
|+|++|+.+|.+++
T Consensus 61 ~~~~~A~~~~~~a~ 74 (166)
T 1a17_A 61 ECYGYALGDATRAI 74 (166)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 44444444444433
No 138
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=61.57 E-value=34 Score=23.62 Aligned_cols=36 Identities=6% Similarity=-0.210 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHH
Q psy1437 4 PEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLE 39 (232)
Q Consensus 4 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~ 39 (232)
...|..+...|.-+-..|+|++|+.+|.+|+++...
T Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 41 (164)
T 3ro3_A 6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 41 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 345566677777777888888888888888876554
No 139
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=61.49 E-value=10 Score=32.29 Aligned_cols=32 Identities=22% Similarity=0.251 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHhhh---------------hcCHHHHHHHHHHHHH
Q psy1437 4 PEEVINAAQMAVKFDE---------------ENQDEIAAYYYQAAAR 35 (232)
Q Consensus 4 ~~~A~~~~~~Av~~D~---------------~g~~~~A~~~Y~~ai~ 35 (232)
.++|+...++|++.|. .|+|++|+.+|++|++
T Consensus 212 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 258 (336)
T 1p5q_A 212 FSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 258 (336)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4556666666666553 3555555555555553
No 140
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=61.11 E-value=47 Score=26.08 Aligned_cols=53 Identities=11% Similarity=0.127 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHH
Q psy1437 7 VINAAQMAVKFDEENQDEIAAYYYQAAARFLLETANSSSDENVAAWRQKAQQYLNRAEVLK 67 (232)
Q Consensus 7 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~e~~~~~~~~~~~k~~eY~~RaE~lk 67 (232)
|.=+..=|.-++..|+|++|-..|+.||+ . .....+.|.++..++..|...-.
T Consensus 96 AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~------~--~A~P~~~L~~~~~~F~~R~~~~~ 148 (164)
T 2wvi_A 96 AQFYISWAEEYEARENFRKADAIFQEGIQ------Q--KAEPLERLQSQHRQFQARVSRQT 148 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------T--TCBSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH------c--CCCcHHHHHHHHHHHHHHHHHHH
Confidence 55566778899999999999999999986 2 22334568999999999986543
No 141
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=61.09 E-value=12 Score=28.99 Aligned_cols=15 Identities=7% Similarity=-0.055 Sum_probs=7.8
Q ss_pred hHHHHHHHHHHHHhh
Q psy1437 4 PEEVINAAQMAVKFD 18 (232)
Q Consensus 4 ~~~A~~~~~~Av~~D 18 (232)
.++|++..++|++.+
T Consensus 23 ~~~A~~~~~~al~~~ 37 (228)
T 4i17_A 23 YAVAFEKYSEYLKLT 37 (228)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcc
Confidence 345555555555544
No 142
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=61.04 E-value=18 Score=24.26 Aligned_cols=41 Identities=22% Similarity=0.173 Sum_probs=30.3
Q ss_pred CCCCCceeEEEEEeCCCCEEEEEecCCchHHHH----HHHCCCCc
Q psy1437 110 PKSEDEIVNITFIDKDGKRREIKGKVGDNVLYL----AHRYEIPM 150 (232)
Q Consensus 110 ~~~~~~mv~Vt~~~~~G~~~~v~~~~G~tLL~a----a~~~gi~l 150 (232)
+...+..+.|++...+|+...+++.+..|+.+. ....|++.
T Consensus 6 ~~~~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~ 50 (88)
T 3dbh_I 6 SVGSGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPP 50 (88)
T ss_dssp CSSCCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCG
T ss_pred CCCCCCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCH
Confidence 344456688998888999989999999998763 33456664
No 143
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=60.58 E-value=11 Score=30.96 Aligned_cols=15 Identities=20% Similarity=0.195 Sum_probs=5.9
Q ss_pred hcCHHHHHHHHHHHH
Q psy1437 20 ENQDEIAAYYYQAAA 34 (232)
Q Consensus 20 ~g~~~~A~~~Y~~ai 34 (232)
.|+|++|+.+|.+|+
T Consensus 50 ~g~~~~A~~~~~~al 64 (292)
T 1qqe_A 50 RKELNLAGDSFLKAA 64 (292)
T ss_dssp TTCTHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 334444444333333
No 144
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=60.28 E-value=35 Score=30.33 Aligned_cols=32 Identities=25% Similarity=0.186 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHhhh------------------hcCHHHHHHHHHHHHH
Q psy1437 4 PEEVINAAQMAVKFDE------------------ENQDEIAAYYYQAAAR 35 (232)
Q Consensus 4 ~~~A~~~~~~Av~~D~------------------~g~~~~A~~~Y~~ai~ 35 (232)
.++|+...++|++.|. .|+|++|+.+|.+|++
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 286 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA 286 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5678888888888766 5777777777777765
No 145
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=60.24 E-value=12 Score=26.11 Aligned_cols=29 Identities=14% Similarity=-0.003 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhhhhcCHHHHHHHHHHHHH
Q psy1437 7 VINAAQMAVKFDEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 7 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 35 (232)
+..+...|..+=..|+|++|+.+|.++++
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 37 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAIT 37 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence 45556667777777777777777777665
No 146
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=59.96 E-value=7 Score=35.08 Aligned_cols=34 Identities=21% Similarity=0.234 Sum_probs=28.4
Q ss_pred chHHHHHHHHHHHHhhhh-----------------------cCHHHHHHHHHHHHHH
Q psy1437 3 LPEEVINAAQMAVKFDEE-----------------------NQDEIAAYYYQAAARF 36 (232)
Q Consensus 3 ~~~~A~~~~~~Av~~D~~-----------------------g~~~~A~~~Y~~ai~~ 36 (232)
-.++|+...++|++.|.. |+|++|+.+|++|+++
T Consensus 194 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 250 (474)
T 4abn_A 194 HVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV 250 (474)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh
Confidence 357899999999998876 8899999988888863
No 147
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=59.89 E-value=10 Score=25.05 Aligned_cols=16 Identities=13% Similarity=0.156 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHHHhhh
Q psy1437 4 PEEVINAAQMAVKFDE 19 (232)
Q Consensus 4 ~~~A~~~~~~Av~~D~ 19 (232)
.++|+...++|++.+.
T Consensus 16 ~~~A~~~~~~al~~~p 31 (99)
T 2kc7_A 16 IENALQALEEFLQTEP 31 (99)
T ss_dssp HHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHCC
Confidence 4566666666666543
No 148
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=59.70 E-value=13 Score=27.40 Aligned_cols=29 Identities=17% Similarity=0.056 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhhhhcCHHHHHHHHHHHHH
Q psy1437 7 VINAAQMAVKFDEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 7 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 35 (232)
+..+...|..+-..|+|++|+.+|.++++
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~ 49 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCV 49 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 33455667777777888877777777654
No 149
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=59.68 E-value=8.3 Score=28.37 Aligned_cols=40 Identities=13% Similarity=0.151 Sum_probs=29.0
Q ss_pred EEEEeCCCCEEEEEecCCchHHHHHHHC----CCCccCCCCCCcccccCEEEEe
Q psy1437 119 ITFIDKDGKRREIKGKVGDNVLYLAHRY----EIPMEGACEASLACTTCHVYVK 168 (232)
Q Consensus 119 Vt~~~~~G~~~~v~~~~G~tLL~aa~~~----gi~l~~~CgG~G~CgtC~v~v~ 168 (232)
|.+..|+++.-.|++.+|.||-+++.++ |+ .+-.|.|...
T Consensus 21 ir~hLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L----------~pe~C~Vy~~ 64 (107)
T 1rrb_A 21 IRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGL----------QPECCAVFRL 64 (107)
T ss_dssp EEEECTTTCCEEEECCTTCBHHHHHHHHHHHHTC----------CTTTEEEEEC
T ss_pred EEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCC----------CHHHceeEEc
Confidence 4444599988889999999998876643 44 2456777766
No 150
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=59.63 E-value=42 Score=26.05 Aligned_cols=39 Identities=23% Similarity=0.058 Sum_probs=26.2
Q ss_pred chHHHHHHHHHHHHhhhhc---------------CH---HHHHHHHHHHHHHHHHHh
Q psy1437 3 LPEEVINAAQMAVKFDEEN---------------QD---EIAAYYYQAAARFLLETA 41 (232)
Q Consensus 3 ~~~~A~~~~~~Av~~D~~g---------------~~---~~A~~~Y~~ai~~l~~~~ 41 (232)
+++.|+..+++|++++-.. ++ .+|+..|.+||..|.+++
T Consensus 17 ~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL 73 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEAL 73 (158)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHH
Confidence 4677888888888876532 22 244456777887777777
No 151
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=59.59 E-value=13 Score=26.68 Aligned_cols=30 Identities=10% Similarity=-0.004 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHH
Q psy1437 6 EVINAAQMAVKFDEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 6 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 35 (232)
.+-.+...|..+-..|+|++|+.+|.+++.
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 46 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCM 46 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 344456677777778888888887777664
No 152
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=58.90 E-value=9.9 Score=27.44 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=31.4
Q ss_pred CceeEEEEEeCCCCEEEEEecCCchHHHHHHH----CCCCccCCCCCCcccccCEEEEec
Q psy1437 114 DEIVNITFIDKDGKRREIKGKVGDNVLYLAHR----YEIPMEGACEASLACTTCHVYVKH 169 (232)
Q Consensus 114 ~~mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~----~gi~l~~~CgG~G~CgtC~v~v~~ 169 (232)
.+.+.|. .|++++-.|++.+|.||.+++.+ -|+ .+-.|.|....
T Consensus 13 ~~~irvh--LPNqQrT~V~VrpG~tlrdaL~KaLk~R~L----------~pe~C~Vy~~~ 60 (96)
T 3ny5_A 13 KPIVRVF--LPNKQRTVVPARCGVTVRDSLKKALMMRGL----------IPECCAVYRIQ 60 (96)
T ss_dssp SCEEEEE--ETTTEEEEEECCTTCBHHHHHHHHHHTTTC----------CGGGEEEEECC
T ss_pred hCEEEEE--CCCCceEEEEecCCcCHHHHHHHHHHHcCC----------ChHHeEEEEcc
Confidence 3445555 49998888999999999887654 344 45567777653
No 153
>1o3u_A Conserved hypothetical protein TM0613; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.75A {Thermotoga maritima} SCOP: a.24.16.3
Probab=58.82 E-value=20 Score=26.83 Aligned_cols=38 Identities=16% Similarity=0.015 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh
Q psy1437 4 PEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA 41 (232)
Q Consensus 4 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~ 41 (232)
+++|....+.|-.+=+.|.|..|.+.-++|++..++++
T Consensus 13 ~~~A~~dL~~A~~~l~~g~y~~a~F~aqQA~EkalKAl 50 (135)
T 1o3u_A 13 MDAAKDDLEHAKHDLEHGFYNWACFSSQQAAEKAVKAV 50 (135)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHH
Confidence 57788888888888889999999999999999999986
No 154
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=58.79 E-value=15 Score=25.40 Aligned_cols=39 Identities=13% Similarity=0.118 Sum_probs=20.3
Q ss_pred chHHHHHHHHHHHHh---hhhc---CHHHHHH-----HHHHHHHHHHHHh
Q psy1437 3 LPEEVINAAQMAVKF---DEEN---QDEIAAY-----YYQAAARFLLETA 41 (232)
Q Consensus 3 ~~~~A~~~~~~Av~~---D~~g---~~~~A~~-----~Y~~ai~~l~~~~ 41 (232)
-.++|+.+.++|++. |..- .+.-|.. -|.+|+++|.+++
T Consensus 5 ~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 54 (117)
T 3k9i_A 5 LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGV 54 (117)
T ss_dssp --CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345677777777776 3211 1111211 3557777777776
No 155
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=58.78 E-value=14 Score=29.00 Aligned_cols=16 Identities=6% Similarity=0.007 Sum_probs=8.2
Q ss_pred hcCHHHHHHHHHHHHH
Q psy1437 20 ENQDEIAAYYYQAAAR 35 (232)
Q Consensus 20 ~g~~~~A~~~Y~~ai~ 35 (232)
.|+|++|+.+|.+|++
T Consensus 90 ~~~~~~A~~~~~~al~ 105 (275)
T 1xnf_A 90 AGNFDAAYEAFDSVLE 105 (275)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHh
Confidence 3455555555555543
No 156
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=58.42 E-value=12 Score=30.99 Aligned_cols=26 Identities=19% Similarity=0.097 Sum_probs=18.0
Q ss_pred HHHHHhhhhcCHHHHHHHHHHHHHHHH
Q psy1437 12 QMAVKFDEENQDEIAAYYYQAAARFLL 38 (232)
Q Consensus 12 ~~Av~~D~~g~~~~A~~~Y~~ai~~l~ 38 (232)
..|.-+.. |+|++|+.+|++|++++.
T Consensus 121 ~lg~~~~~-g~~~~A~~~~~~Al~~~~ 146 (307)
T 2ifu_A 121 RAGKLMEP-LDLSKAVHLYQQAAAVFE 146 (307)
T ss_dssp HHHHHHTT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHc-CCHHHHHHHHHHHHHHHH
Confidence 33444445 788888888888887654
No 157
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=58.20 E-value=14 Score=28.01 Aligned_cols=15 Identities=13% Similarity=0.049 Sum_probs=6.9
Q ss_pred cCHHHHHHHHHHHHH
Q psy1437 21 NQDEIAAYYYQAAAR 35 (232)
Q Consensus 21 g~~~~A~~~Y~~ai~ 35 (232)
|+|++|+.+|+++++
T Consensus 85 ~~~~~A~~~~~~al~ 99 (213)
T 1hh8_A 85 EKYDLAIKDLKEALI 99 (213)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 444444444444443
No 158
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=58.09 E-value=17 Score=29.69 Aligned_cols=64 Identities=11% Similarity=-0.008 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHhccCChH----------HHHH-HHHHHHHHHHHHHHHHHHH
Q psy1437 7 VINAAQMAVKFDEENQDEIAAYYYQAAARFLLETANSSSDE----------NVAA-WRQKAQQYLNRAEVLKDKI 70 (232)
Q Consensus 7 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~e~~~~----------~~~~-~~~k~~eY~~RaE~lk~~~ 70 (232)
+.-+...|.-+-..|+|++|+.+|.+|+++....-....-. .+.. ..+++.+|.++|-.|-+.+
T Consensus 196 ~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~ 270 (293)
T 3u3w_A 196 VKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL 270 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 33556788888999999999999999998664321000000 0000 1256778888887776655
No 159
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=57.85 E-value=28 Score=29.46 Aligned_cols=32 Identities=13% Similarity=0.155 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHH
Q psy1437 6 EVINAAQMAVKFDEENQDEIAAYYYQAAARFL 37 (232)
Q Consensus 6 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l 37 (232)
.+..+..+|..+-..|+|++|+.+|++|+++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~ 177 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL 177 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 45566788899999999999999999999754
No 160
>1wol_A ST0689, 122AA long conserved hypothetical protein; alpha helix, loop, unknown function; 1.62A {Sulfolobus tokodaii}
Probab=57.51 E-value=21 Score=26.00 Aligned_cols=39 Identities=13% Similarity=0.018 Sum_probs=34.9
Q ss_pred chHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh
Q psy1437 3 LPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA 41 (232)
Q Consensus 3 ~~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~ 41 (232)
.+++|....+.|-..=+.|.|..|.+.-++|++..++++
T Consensus 7 wl~~A~~dL~~A~~~~~~g~y~~a~f~aqQa~Ek~lKal 45 (122)
T 1wol_A 7 WIKQAERDLEEARYAKSGGYYELACFLSQQCAEKAVKGL 45 (122)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHH
Confidence 467888888899888889999999999999999999986
No 161
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=57.07 E-value=20 Score=24.87 Aligned_cols=31 Identities=13% Similarity=0.112 Sum_probs=21.5
Q ss_pred HHHHHHHHhhhhcCHHHHHHHHHHHHHHHHH
Q psy1437 9 NAAQMAVKFDEENQDEIAAYYYQAAARFLLE 39 (232)
Q Consensus 9 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~ 39 (232)
.+...|.-+-..|+|++|+.+|.+|+++...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 81 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQ 81 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3444555666778888888888888876543
No 162
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=57.03 E-value=57 Score=25.62 Aligned_cols=37 Identities=16% Similarity=0.261 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHH
Q psy1437 4 PEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLET 40 (232)
Q Consensus 4 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~ 40 (232)
...+..+...|..+-..|+|++|+.+|.++++++...
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 60 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKT 60 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 3556677888899999999999999999999876544
No 163
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=57.02 E-value=20 Score=26.82 Aligned_cols=35 Identities=20% Similarity=0.074 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHH
Q psy1437 6 EVINAAQMAVKFDEENQDEIAAYYYQAAARFLLET 40 (232)
Q Consensus 6 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~ 40 (232)
+|.+.+-.|++.=++|+|++|-.+.++|-+.|..+
T Consensus 36 ~ARS~~~eAl~~Ak~gdfe~A~~~l~eA~e~l~~A 70 (120)
T 3l8r_A 36 NARSIVHEAFDAMREKNYILAEQKLQEANDELLKA 70 (120)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 46666677777777777777777777776666654
No 164
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.91 E-value=20 Score=23.56 Aligned_cols=37 Identities=14% Similarity=0.224 Sum_probs=28.0
Q ss_pred CCceeEEEEEeCCCCEEEEEecCCchHHHH----HHHCCCC
Q psy1437 113 EDEIVNITFIDKDGKRREIKGKVGDNVLYL----AHRYEIP 149 (232)
Q Consensus 113 ~~~mv~Vt~~~~~G~~~~v~~~~G~tLL~a----a~~~gi~ 149 (232)
++.+++|++...+|+...+++.+..|+.+. ....|++
T Consensus 4 ~~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~ 44 (81)
T 2dzi_A 4 GSSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVP 44 (81)
T ss_dssp SSSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCC
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcC
Confidence 456688888878898888999999998764 3355665
No 165
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=56.90 E-value=16 Score=25.31 Aligned_cols=24 Identities=4% Similarity=-0.029 Sum_probs=16.1
Q ss_pred HHHHHhhhhcCHHHHHHHHHHHHH
Q psy1437 12 QMAVKFDEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 12 ~~Av~~D~~g~~~~A~~~Y~~ai~ 35 (232)
..|..+.+.|++++|+.+|++|++
T Consensus 51 ~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 51 YLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHh
Confidence 444555666777777777777764
No 166
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=56.89 E-value=23 Score=34.12 Aligned_cols=61 Identities=15% Similarity=0.034 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHhc-cCChHHHHHHHHHHHHHHHHHHHH
Q psy1437 6 EVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETAN-SSSDENVAAWRQKAQQYLNRAEVL 66 (232)
Q Consensus 6 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~-e~~~~~~~~~~~k~~eY~~RaE~l 66 (232)
.|+..-..|+.++.+++|.+|+.+++.|.+.|..+.. .+.......+.+++..-+++|++-
T Consensus 259 ~A~A~y~~a~~~~e~~k~GeaIa~L~~A~~~l~~a~~~~~~~~~~~~l~~~i~~~l~~~~kd 320 (704)
T 2xs1_A 259 QANAEYHQSILAKQQYYFGEEIARLQHAAELIKTVASRYDEYVNVKDFSDKINRALAAAKKD 320 (704)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHhcchHhHHHHHHHHHHHHHHHHHh
Confidence 4566667799999999999999999999998887762 111111223555555555555443
No 167
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=56.88 E-value=13 Score=25.58 Aligned_cols=34 Identities=15% Similarity=0.195 Sum_probs=25.7
Q ss_pred EEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCC
Q psy1437 119 ITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGAC 154 (232)
Q Consensus 119 Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~C 154 (232)
|.+..|+|.. ++.+.|.|.+|.|.+-+-.+...|
T Consensus 8 i~v~tP~G~~--~~lp~GaT~~D~A~~Ih~~lg~~~ 41 (78)
T 3hvz_A 8 VFVFTPKGDV--ISLPIGSTVIDFAYAIHSAVGNRM 41 (78)
T ss_dssp EEEECTTSCE--EEEETTCBHHHHHHHHCHHHHHTE
T ss_pred EEEECCCCCE--EEecCCCCHHHHHHHhhhhhhcce
Confidence 5555799987 778999999999987655554444
No 168
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=56.14 E-value=22 Score=25.90 Aligned_cols=35 Identities=17% Similarity=0.054 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHH
Q psy1437 6 EVINAAQMAVKFDEENQDEIAAYYYQAAARFLLET 40 (232)
Q Consensus 6 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~ 40 (232)
+|.+.+-.|++.=++|+|++|-.+.++|=+.|..+
T Consensus 19 ~ArS~~~eAl~~Ak~g~fe~A~~~l~eA~~~l~~A 53 (105)
T 2e2a_A 19 DARSKLLEALKAAENGDFAKADSLVVEAGSCIAEA 53 (105)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 56777778888888888888888888777777665
No 169
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=56.13 E-value=10 Score=32.34 Aligned_cols=34 Identities=15% Similarity=0.044 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHH
Q psy1437 4 PEEVINAAQMAVKFDEENQDEIAAYYYQAAARFL 37 (232)
Q Consensus 4 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l 37 (232)
.+.|..+-.+|..+-+.|+|++|+.+|.+|+++.
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~ 209 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM 209 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 3467778889999999999999999999999753
No 170
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=56.04 E-value=22 Score=26.10 Aligned_cols=35 Identities=17% Similarity=0.072 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHH
Q psy1437 6 EVINAAQMAVKFDEENQDEIAAYYYQAAARFLLET 40 (232)
Q Consensus 6 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~ 40 (232)
+|.+.+-.|++.=++|+|++|-.+.++|=+.|..+
T Consensus 21 ~Ars~~~eAl~~Ak~gdfe~A~~~l~eA~~~l~~A 55 (109)
T 3k1s_A 21 NARSFAMEALQFAKQGKMAEADEAMVKAKEAINEA 55 (109)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 56777888888888888888888888887777765
No 171
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=55.89 E-value=23 Score=25.75 Aligned_cols=35 Identities=17% Similarity=0.043 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHH
Q psy1437 6 EVINAAQMAVKFDEENQDEIAAYYYQAAARFLLET 40 (232)
Q Consensus 6 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~ 40 (232)
+|.+.+-.|++.=++|+|++|-.+.++|=+.|..+
T Consensus 17 ~Ars~~~eAl~~Ak~g~fe~A~~~l~eA~~~l~~A 51 (103)
T 1wcr_A 17 QARSLAYAALKQAKQGDFAAAKAMMDQSRMALNEA 51 (103)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 57788888889899999999988888888877765
No 172
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=55.88 E-value=5.7 Score=32.88 Aligned_cols=29 Identities=24% Similarity=0.159 Sum_probs=21.2
Q ss_pred hHHHHHHHCCCCc------cCCCCCCcccccCEEEEe
Q psy1437 138 NVLYLAHRYEIPM------EGACEASLACTTCHVYVK 168 (232)
Q Consensus 138 tLL~aa~~~gi~l------~~~CgG~G~CgtC~v~v~ 168 (232)
.+.+ +.+.|++. ...|| .|.||.|.|.+.
T Consensus 205 ~v~~-l~~~gv~~~vs~e~~m~CG-~G~C~~C~~~~~ 239 (262)
T 1ep3_B 205 AVAK-KYDQLERLYISMESRMACG-IGACYACVEHDK 239 (262)
T ss_dssp HHHH-HTTTCSSEEEECCCCCSSS-SSSSCTTEEEET
T ss_pred HHHH-HHhCCCCEEEEecccccCc-ccccccCCcccc
Confidence 4455 66678763 26786 899999999864
No 173
>1ufb_A TT1696 protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.90A {Thermus thermophilus} SCOP: a.24.16.3
Probab=55.86 E-value=22 Score=25.89 Aligned_cols=39 Identities=18% Similarity=-0.026 Sum_probs=35.0
Q ss_pred chHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh
Q psy1437 3 LPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA 41 (232)
Q Consensus 3 ~~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~ 41 (232)
.+++|....+.|-..=+.|.|..|.+.-++|++..++++
T Consensus 7 w~~~A~~~L~~A~~~~~~g~y~~a~f~a~qa~Ek~lKal 45 (127)
T 1ufb_A 7 WLEQARHNLRHAQGSLGLGDYAWACFAAQQAAEAALKGL 45 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHH
Confidence 467888999999888889999999999999999999986
No 174
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=55.75 E-value=21 Score=23.67 Aligned_cols=28 Identities=18% Similarity=0.177 Sum_probs=15.4
Q ss_pred HHHHHHHHHhhhhcCHHHHHHHHHHHHH
Q psy1437 8 INAAQMAVKFDEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 8 ~~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 35 (232)
..+...|..+-..|+|++|+.+|.++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 37 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALE 37 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344455555556666666666665553
No 175
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=55.66 E-value=19 Score=24.19 Aligned_cols=34 Identities=12% Similarity=-0.067 Sum_probs=22.2
Q ss_pred CchHHHHHHHHHHHHhhh---------------hcCHHHHHHHHHHHHH
Q psy1437 2 GLPEEVINAAQMAVKFDE---------------ENQDEIAAYYYQAAAR 35 (232)
Q Consensus 2 ~~~~~A~~~~~~Av~~D~---------------~g~~~~A~~~Y~~ai~ 35 (232)
+-.+.|+.+.++|++.+. .|+|++|+.+|.++++
T Consensus 26 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 74 (131)
T 2vyi_A 26 ENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAIC 74 (131)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHh
Confidence 345677888777777653 5666666666666654
No 176
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=54.92 E-value=12 Score=28.97 Aligned_cols=31 Identities=19% Similarity=0.162 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHHH
Q psy1437 6 EVINAAQMAVKFDEENQDEIAAYYYQAAARF 36 (232)
Q Consensus 6 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 36 (232)
.+-.+..+|+.+=..|+|++|+.+|.++++.
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 33 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIAL 33 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3456778888888999999999999999863
No 177
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=54.83 E-value=67 Score=25.19 Aligned_cols=30 Identities=20% Similarity=0.183 Sum_probs=22.1
Q ss_pred HHHHHHhhhhcCHHHHHHHHHHHHHHHHHH
Q psy1437 11 AQMAVKFDEENQDEIAAYYYQAAARFLLET 40 (232)
Q Consensus 11 ~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~ 40 (232)
...|.-+-..|+|++|+.+|.+|++++...
T Consensus 73 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 73 NILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 334444556799999999999999876544
No 178
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=54.65 E-value=22 Score=26.58 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=25.3
Q ss_pred CCceeEEEEEeCCCCEEEEEecCCchHHHH
Q psy1437 113 EDEIVNITFIDKDGKRREIKGKVGDNVLYL 142 (232)
Q Consensus 113 ~~~mv~Vt~~~~~G~~~~v~~~~G~tLL~a 142 (232)
...++.|+|....|+.+++++.+.+|+.++
T Consensus 14 ~~~~m~I~vktl~G~~~~lev~~s~TV~~l 43 (125)
T 2gow_A 14 PADMINLRLILVSGKTKEFLFSPNDSASDI 43 (125)
T ss_dssp CTTCEEEEEECTTSCEEEEEECTTSBHHHH
T ss_pred CCCeEEEEEEeCCCCEEEEEeCCccHHHHH
Confidence 345689999888999999999999998764
No 179
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=54.34 E-value=12 Score=25.56 Aligned_cols=33 Identities=9% Similarity=-0.038 Sum_probs=21.9
Q ss_pred chHHHHHHHHHHHHhh---------------hhcCHHHHHHHHHHHHH
Q psy1437 3 LPEEVINAAQMAVKFD---------------EENQDEIAAYYYQAAAR 35 (232)
Q Consensus 3 ~~~~A~~~~~~Av~~D---------------~~g~~~~A~~~Y~~ai~ 35 (232)
-.++|+.+.++|++.+ ..|+|++|+.+|.++++
T Consensus 31 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 78 (133)
T 2lni_A 31 DYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQ 78 (133)
T ss_dssp CSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3466777777777665 35666777777766665
No 180
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=54.33 E-value=16 Score=29.16 Aligned_cols=15 Identities=27% Similarity=0.406 Sum_probs=8.4
Q ss_pred hcCHHHHHHHHHHHH
Q psy1437 20 ENQDEIAAYYYQAAA 34 (232)
Q Consensus 20 ~g~~~~A~~~Y~~ai 34 (232)
.|++++|+.+|++|+
T Consensus 91 ~~~~~~A~~~~~~a~ 105 (273)
T 1ouv_A 91 SQNTNKALQYYSKAC 105 (273)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH
Confidence 555555555555554
No 181
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=53.95 E-value=27 Score=31.01 Aligned_cols=15 Identities=13% Similarity=0.277 Sum_probs=7.0
Q ss_pred hHHHHHHHHHHHHhh
Q psy1437 4 PEEVINAAQMAVKFD 18 (232)
Q Consensus 4 ~~~A~~~~~~Av~~D 18 (232)
.++|+...++|+++|
T Consensus 333 ~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 333 YTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcC
Confidence 344444444444444
No 182
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.74 E-value=13 Score=25.99 Aligned_cols=30 Identities=13% Similarity=-0.083 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHH
Q psy1437 6 EVINAAQMAVKFDEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 6 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 35 (232)
.+..+...|..+-..|+|++|+.+|.++++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 56 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG 56 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345566667777777777777777776653
No 183
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=53.49 E-value=15 Score=33.18 Aligned_cols=16 Identities=13% Similarity=-0.253 Sum_probs=7.3
Q ss_pred hhcCHHHHHHHHHHHH
Q psy1437 19 EENQDEIAAYYYQAAA 34 (232)
Q Consensus 19 ~~g~~~~A~~~Y~~ai 34 (232)
..|+|++|+.+|++|+
T Consensus 52 ~~g~~~~A~~~~~~al 67 (477)
T 1wao_1 52 RTECYGYALGDATRAI 67 (477)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHH
Confidence 4444444444444443
No 184
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=53.48 E-value=50 Score=25.12 Aligned_cols=29 Identities=14% Similarity=0.172 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhhhhcCHHHHHHHHHHHHH
Q psy1437 7 VINAAQMAVKFDEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 7 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 35 (232)
+.-+...|.-+-..|++++|+.+|.++++
T Consensus 79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 107 (258)
T 3uq3_A 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLT 107 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 34445566666667777777777776665
No 185
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=52.79 E-value=20 Score=24.56 Aligned_cols=37 Identities=14% Similarity=0.247 Sum_probs=26.2
Q ss_pred CceeEEEEEeCCCCEEEEEecC-CchHHHHHHHCCCCccCCC
Q psy1437 114 DEIVNITFIDKDGKRREIKGKV-GDNVLYLAHRYEIPMEGAC 154 (232)
Q Consensus 114 ~~mv~Vt~~~~~G~~~~v~~~~-G~tLL~aa~~~gi~l~~~C 154 (232)
..|++|++ |+|.. .+++. |.|+++.+...+-.+...|
T Consensus 9 ~~~i~I~l--pdG~~--~~~~~~~~T~~dia~~i~~~l~~~~ 46 (88)
T 1wwt_A 9 SKPIKVTL--PDGKQ--VDAESWKTTPYQIACGISQGLADNT 46 (88)
T ss_dssp CCEEEEEC--TTSCE--EEEETTTCCHHHHHHHSSTTTGGGC
T ss_pred CCCEEEEE--CCCCE--EEcccCCCCHHHHHHHhhhccccce
Confidence 45667774 78887 55566 8999999988765554444
No 186
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=51.91 E-value=13 Score=29.07 Aligned_cols=16 Identities=19% Similarity=0.412 Sum_probs=8.5
Q ss_pred hcCHHHHHHHHHHHHH
Q psy1437 20 ENQDEIAAYYYQAAAR 35 (232)
Q Consensus 20 ~g~~~~A~~~Y~~ai~ 35 (232)
.+++++|+.+|++|++
T Consensus 142 ~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 142 PEDDVKASEYFKGSSS 157 (212)
T ss_dssp SCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4455555555555554
No 187
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=51.81 E-value=18 Score=28.76 Aligned_cols=16 Identities=19% Similarity=0.223 Sum_probs=8.8
Q ss_pred hcCHHHHHHHHHHHHH
Q psy1437 20 ENQDEIAAYYYQAAAR 35 (232)
Q Consensus 20 ~g~~~~A~~~Y~~ai~ 35 (232)
.|++++|+.+|++|++
T Consensus 127 ~~~~~~A~~~~~~a~~ 142 (273)
T 1ouv_A 127 TRDFKKAVEYFTKACD 142 (273)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHh
Confidence 5555555555555543
No 188
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=51.49 E-value=20 Score=23.74 Aligned_cols=32 Identities=31% Similarity=0.387 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHhh---------------hhcCHHHHHHHHHHHHH
Q psy1437 4 PEEVINAAQMAVKFD---------------EENQDEIAAYYYQAAAR 35 (232)
Q Consensus 4 ~~~A~~~~~~Av~~D---------------~~g~~~~A~~~Y~~ai~ 35 (232)
.++|+.+..+|++.+ ..|+|++|+.+|.++++
T Consensus 25 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 71 (125)
T 1na0_A 25 YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (125)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455666666666543 45666666666666654
No 189
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=51.23 E-value=21 Score=24.30 Aligned_cols=33 Identities=12% Similarity=0.161 Sum_probs=18.9
Q ss_pred chHHHHHHHHHHHHhhh---------------hcCHHHHHHHHHHHHH
Q psy1437 3 LPEEVINAAQMAVKFDE---------------ENQDEIAAYYYQAAAR 35 (232)
Q Consensus 3 ~~~~A~~~~~~Av~~D~---------------~g~~~~A~~~Y~~ai~ 35 (232)
-.++|+...++|++.|. .|++++|+.+|.+|++
T Consensus 34 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 34 QFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34566666666666553 3455555555555554
No 190
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=51.19 E-value=16 Score=29.95 Aligned_cols=15 Identities=13% Similarity=-0.015 Sum_probs=8.0
Q ss_pred hHHHHHHHHHHHHhh
Q psy1437 4 PEEVINAAQMAVKFD 18 (232)
Q Consensus 4 ~~~A~~~~~~Av~~D 18 (232)
.+.|+.+.++|++.+
T Consensus 20 ~~~A~~~~~~al~~~ 34 (281)
T 2c2l_A 20 YPEAAACYGRAITRN 34 (281)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhC
Confidence 445555555555544
No 191
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=51.17 E-value=24 Score=28.75 Aligned_cols=30 Identities=10% Similarity=0.069 Sum_probs=22.0
Q ss_pred HHHHHHHhhhhcCHHHHHHHHHHHHHHHHH
Q psy1437 10 AAQMAVKFDEENQDEIAAYYYQAAARFLLE 39 (232)
Q Consensus 10 ~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~ 39 (232)
+...|.-+-..|+|++|+.+|++|++.+..
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 187 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEA 187 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 344455566778999999999999976543
No 192
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=50.81 E-value=30 Score=28.63 Aligned_cols=48 Identities=25% Similarity=0.270 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH
Q psy1437 7 VINAAQMAVKFDEENQDEIAAYYYQAAARFLLETANSSSDENVAAWRQKAQQYLNR 62 (232)
Q Consensus 7 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~e~~~~~~~~~~~k~~eY~~R 62 (232)
|.=+..=|.-++..|+|++|-..|+.||+. .....+.++++..++..|
T Consensus 150 AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~--------~A~P~~rL~~~~~~F~~R 197 (223)
T 4aez_C 150 SIFYEEYANYFESRGLFQKADEVYQKGKRM--------KAKPFLRFQQKYQQFTHR 197 (223)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------TCBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCccHHHHHHHHHHHHHH
Confidence 455667788999999999999999999962 222345688999998887
No 193
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=50.66 E-value=17 Score=32.72 Aligned_cols=18 Identities=17% Similarity=0.213 Sum_probs=11.3
Q ss_pred chHHHHHHHHHHHHhhhh
Q psy1437 3 LPEEVINAAQMAVKFDEE 20 (232)
Q Consensus 3 ~~~~A~~~~~~Av~~D~~ 20 (232)
-.++|+...++|++.|..
T Consensus 55 ~~~~A~~~~~~al~l~p~ 72 (477)
T 1wao_1 55 CYGYALGDATRAIELDKK 72 (477)
T ss_dssp CHHHHHHHHHHHHHSCTT
T ss_pred CHHHHHHHHHHHHHhCCC
Confidence 345666677777766554
No 194
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=50.05 E-value=20 Score=26.09 Aligned_cols=15 Identities=33% Similarity=0.414 Sum_probs=7.5
Q ss_pred hcCHHHHHHHHHHHH
Q psy1437 20 ENQDEIAAYYYQAAA 34 (232)
Q Consensus 20 ~g~~~~A~~~Y~~ai 34 (232)
.+++++|+.+|++|+
T Consensus 74 ~~d~~~A~~~~~~Aa 88 (138)
T 1klx_A 74 KKDLRKAAQYYSKAC 88 (138)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHH
Confidence 344555555555544
No 195
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=49.93 E-value=27 Score=23.26 Aligned_cols=15 Identities=33% Similarity=0.406 Sum_probs=6.7
Q ss_pred hcCHHHHHHHHHHHH
Q psy1437 20 ENQDEIAAYYYQAAA 34 (232)
Q Consensus 20 ~g~~~~A~~~Y~~ai 34 (232)
.|++++|+.+|.+++
T Consensus 48 ~~~~~~A~~~~~~~~ 62 (136)
T 2fo7_A 48 QGDYDEAIEYYQKAL 62 (136)
T ss_dssp HTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHH
Confidence 344444444444443
No 196
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=49.78 E-value=22 Score=27.30 Aligned_cols=18 Identities=22% Similarity=0.106 Sum_probs=9.5
Q ss_pred hhcCHHHHHHHHHHHHHH
Q psy1437 19 EENQDEIAAYYYQAAARF 36 (232)
Q Consensus 19 ~~g~~~~A~~~Y~~ai~~ 36 (232)
..|+|++|+.+|.++++.
T Consensus 50 ~~~~~~~A~~~~~~a~~~ 67 (258)
T 3uq3_A 50 EKGEYETAISTLNDAVEQ 67 (258)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHh
Confidence 345555555555555543
No 197
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=49.61 E-value=18 Score=27.90 Aligned_cols=42 Identities=14% Similarity=0.138 Sum_probs=28.4
Q ss_pred CCCCCCceeEEEEEeCCCCEEEEEecCCchHHHH----HHHCCCCc
Q psy1437 109 DPKSEDEIVNITFIDKDGKRREIKGKVGDNVLYL----AHRYEIPM 150 (232)
Q Consensus 109 ~~~~~~~mv~Vt~~~~~G~~~~v~~~~G~tLL~a----a~~~gi~l 150 (232)
.|.....++.|++...+|+.+.+++.+.+|+.+. ....|++.
T Consensus 13 ~~~~~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~ 58 (172)
T 3u30_A 13 GLVPRGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 58 (172)
T ss_dssp ------CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCG
T ss_pred CCCCCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCh
Confidence 3444556688988888999889999999999873 44556654
No 198
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=49.56 E-value=7.1 Score=34.42 Aligned_cols=16 Identities=0% Similarity=-0.211 Sum_probs=7.3
Q ss_pred hhcCHHHHHHHHHHHH
Q psy1437 19 EENQDEIAAYYYQAAA 34 (232)
Q Consensus 19 ~~g~~~~A~~~Y~~ai 34 (232)
..|+|++|+.+|.+||
T Consensus 178 ~~g~~~eAl~~~~kal 193 (382)
T 2h6f_A 178 WLRDPSQELEFIADIL 193 (382)
T ss_dssp HHTCCTTHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHH
Confidence 3444444444444444
No 199
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=49.15 E-value=29 Score=25.10 Aligned_cols=28 Identities=14% Similarity=0.094 Sum_probs=24.0
Q ss_pred CceeEEEEEeCCCCEEEEEecCCchHHH
Q psy1437 114 DEIVNITFIDKDGKRREIKGKVGDNVLY 141 (232)
Q Consensus 114 ~~mv~Vt~~~~~G~~~~v~~~~G~tLL~ 141 (232)
....+|+|...+|+..+|++.+..|+.+
T Consensus 5 ~~~M~I~Vk~l~g~~~~v~V~~~~TV~d 32 (105)
T 1v2y_A 5 SSGMTVRVCKMDGEVMPVVVVQNATVLD 32 (105)
T ss_dssp CCSEEEEEECSSSCEEEEEECTTCBHHH
T ss_pred CCcEEEEEEecCCCEEEEEECCCChHHH
Confidence 4458899888899999999999999875
No 200
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=48.82 E-value=28 Score=29.34 Aligned_cols=28 Identities=18% Similarity=0.193 Sum_probs=18.2
Q ss_pred HHHHHHHhhhhcCHHHHHHHHHHHHHHH
Q psy1437 10 AAQMAVKFDEENQDEIAAYYYQAAARFL 37 (232)
Q Consensus 10 ~~~~Av~~D~~g~~~~A~~~Y~~ai~~l 37 (232)
+...|.-+-..|+|++|+.+|++|+++.
T Consensus 227 ~~~lg~~y~~~g~~~~A~~~~~~al~~~ 254 (383)
T 3ulq_A 227 LYNIGLCKNSQSQYEDAIPYFKRAIAVF 254 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3445556667777777777777777643
No 201
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=48.78 E-value=16 Score=30.36 Aligned_cols=32 Identities=19% Similarity=-0.001 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHhhh-----------------hcCHHHHHHHHHHHHH
Q psy1437 4 PEEVINAAQMAVKFDE-----------------ENQDEIAAYYYQAAAR 35 (232)
Q Consensus 4 ~~~A~~~~~~Av~~D~-----------------~g~~~~A~~~Y~~ai~ 35 (232)
.++|+.+.++|++.+. .|+|++|+.+|.++++
T Consensus 193 ~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 241 (365)
T 4eqf_A 193 LEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALT 241 (365)
T ss_dssp HHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4556666666665543 4777777777777765
No 202
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=48.65 E-value=10 Score=28.79 Aligned_cols=28 Identities=18% Similarity=0.036 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHH
Q psy1437 6 EVINAAQMAVKFDEENQDEIAAYYYQAA 33 (232)
Q Consensus 6 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~a 33 (232)
.++.+...|..+-..|+|++|+.+|.++
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a 32 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAV 32 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4555556666666666666666665544
No 203
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=48.65 E-value=18 Score=27.90 Aligned_cols=29 Identities=7% Similarity=-0.057 Sum_probs=21.6
Q ss_pred HHHHHHHHHhhhhcCHHHHHHHHHHHHHH
Q psy1437 8 INAAQMAVKFDEENQDEIAAYYYQAAARF 36 (232)
Q Consensus 8 ~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 36 (232)
-.+..+|..+-..|+|++|+.+|.++++.
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 36 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKL 36 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 45667777777888888888888877753
No 204
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=48.49 E-value=26 Score=28.05 Aligned_cols=17 Identities=18% Similarity=-0.003 Sum_probs=11.8
Q ss_pred hhcCHHHHHHHHHHHHH
Q psy1437 19 EENQDEIAAYYYQAAAR 35 (232)
Q Consensus 19 ~~g~~~~A~~~Y~~ai~ 35 (232)
..|++++|+.+|+++++
T Consensus 248 ~~g~~~~A~~~~~~a~~ 264 (330)
T 3hym_B 248 KLKKYAEALDYHRQALV 264 (330)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHh
Confidence 45777777777777664
No 205
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=48.41 E-value=20 Score=25.00 Aligned_cols=42 Identities=14% Similarity=0.131 Sum_probs=27.4
Q ss_pred CCCCCCceeEEEEEeCCCCEEEEEecCCchHHHH----HHHCCCCc
Q psy1437 109 DPKSEDEIVNITFIDKDGKRREIKGKVGDNVLYL----AHRYEIPM 150 (232)
Q Consensus 109 ~~~~~~~mv~Vt~~~~~G~~~~v~~~~G~tLL~a----a~~~gi~l 150 (232)
.|...+..++|+|...+|+.+.|++.+..|+.+. ....|++.
T Consensus 15 ~~~~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~ 60 (98)
T 4hcn_B 15 NLYFQGRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPP 60 (98)
T ss_dssp -------CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCG
T ss_pred CCCCCCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCCh
Confidence 3444566788998888999989999999999763 33456654
No 206
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=47.93 E-value=35 Score=23.22 Aligned_cols=39 Identities=13% Similarity=0.159 Sum_probs=29.3
Q ss_pred CCceeEEEEEeCCCCEEEEEecCCchHHHH----HHHCCCCcc
Q psy1437 113 EDEIVNITFIDKDGKRREIKGKVGDNVLYL----AHRYEIPME 151 (232)
Q Consensus 113 ~~~mv~Vt~~~~~G~~~~v~~~~G~tLL~a----a~~~gi~l~ 151 (232)
....+.|++...+|+...+.+.+..|+.+. ....|++..
T Consensus 14 ~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~ 56 (91)
T 3v6c_B 14 PRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPD 56 (91)
T ss_dssp CCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGG
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChh
Confidence 345578998888999989999999999763 334566643
No 207
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=47.42 E-value=67 Score=25.70 Aligned_cols=23 Identities=9% Similarity=0.088 Sum_probs=15.4
Q ss_pred HHHHhhhhcCHHHHHHHHHHHHH
Q psy1437 13 MAVKFDEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 13 ~Av~~D~~g~~~~A~~~Y~~ai~ 35 (232)
.|.-+-..|+|++|+.+|.++++
T Consensus 278 la~~~~~~~~~~~A~~~~~~~~~ 300 (359)
T 3ieg_A 278 ICHCFSKDEKPVEAIRICSEVLQ 300 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 34445567777777777777765
No 208
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=47.00 E-value=16 Score=30.32 Aligned_cols=24 Identities=13% Similarity=0.160 Sum_probs=16.3
Q ss_pred HHHhhhhcCHHHHHHHHHHHHHHH
Q psy1437 14 AVKFDEENQDEIAAYYYQAAARFL 37 (232)
Q Consensus 14 Av~~D~~g~~~~A~~~Y~~ai~~l 37 (232)
+.-+-..|+|++|+.+|++|++++
T Consensus 83 g~~~~~~g~~~~A~~~~~~Al~l~ 106 (307)
T 2ifu_A 83 GMMLKDLQRMPEAVQYIEKASVMY 106 (307)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHH
Confidence 333444578888888888887764
No 209
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=46.69 E-value=74 Score=24.53 Aligned_cols=39 Identities=8% Similarity=0.046 Sum_probs=22.8
Q ss_pred chHHHHHHHHHHHHhhhhcCHHHHHH-----H-----HHHHHHHHHHHh
Q psy1437 3 LPEEVINAAQMAVKFDEENQDEIAAY-----Y-----YQAAARFLLETA 41 (232)
Q Consensus 3 ~~~~A~~~~~~Av~~D~~g~~~~A~~-----~-----Y~~ai~~l~~~~ 41 (232)
..++||.+....++.|...+-.++++ + |.+|.+++-.++
T Consensus 50 ~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL 98 (152)
T 1pc2_A 50 DIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLL 98 (152)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 35678888888888762112223332 2 456777777666
No 210
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=46.57 E-value=22 Score=27.77 Aligned_cols=33 Identities=12% Similarity=-0.076 Sum_probs=19.4
Q ss_pred chHHHHHHHHHHHHhh---------------hhcCHHHHHHHHHHHHH
Q psy1437 3 LPEEVINAAQMAVKFD---------------EENQDEIAAYYYQAAAR 35 (232)
Q Consensus 3 ~~~~A~~~~~~Av~~D---------------~~g~~~~A~~~Y~~ai~ 35 (232)
-.++|+.+.++|++.| ..|+|++|+.+|.++++
T Consensus 18 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 65 (272)
T 3u4t_A 18 NYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS 65 (272)
T ss_dssp CHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3556677777766665 34555555555555554
No 211
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=46.11 E-value=70 Score=25.79 Aligned_cols=27 Identities=11% Similarity=0.080 Sum_probs=20.8
Q ss_pred HHHHHhhhhcCHHHHHHHHHHHHHHHH
Q psy1437 12 QMAVKFDEENQDEIAAYYYQAAARFLL 38 (232)
Q Consensus 12 ~~Av~~D~~g~~~~A~~~Y~~ai~~l~ 38 (232)
..|.-+-..|+|++|+.+|++|++++.
T Consensus 160 ~lg~~y~~~~~~~~A~~~~~kal~~~~ 186 (293)
T 2qfc_A 160 AIANIYAENGYLKKGIDLFEQILKQLE 186 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 445556678999999999999997654
No 212
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=45.97 E-value=26 Score=25.51 Aligned_cols=14 Identities=7% Similarity=-0.069 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHh
Q psy1437 4 PEEVINAAQMAVKF 17 (232)
Q Consensus 4 ~~~A~~~~~~Av~~ 17 (232)
.++|+.+.++|.+.
T Consensus 77 ~~~A~~~~~~Aa~~ 90 (138)
T 1klx_A 77 LRKAAQYYSKACGL 90 (138)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC
Confidence 56788888888875
No 213
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=45.37 E-value=33 Score=26.08 Aligned_cols=15 Identities=33% Similarity=0.326 Sum_probs=6.9
Q ss_pred hcCHHHHHHHHHHHH
Q psy1437 20 ENQDEIAAYYYQAAA 34 (232)
Q Consensus 20 ~g~~~~A~~~Y~~ai 34 (232)
.|++++|+.+|.+++
T Consensus 138 ~~~~~~A~~~~~~~~ 152 (243)
T 2q7f_A 138 LEQPKLALPYLQRAV 152 (243)
T ss_dssp TSCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHH
Confidence 344444444444444
No 214
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=45.25 E-value=35 Score=22.77 Aligned_cols=37 Identities=14% Similarity=0.141 Sum_probs=27.7
Q ss_pred CceeEEEEEeCCCCEEEEEecCCchHHHH----HHHCCCCc
Q psy1437 114 DEIVNITFIDKDGKRREIKGKVGDNVLYL----AHRYEIPM 150 (232)
Q Consensus 114 ~~mv~Vt~~~~~G~~~~v~~~~G~tLL~a----a~~~gi~l 150 (232)
+.++.|++...+|+...+++.+..|+.+. ....|++.
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~ 45 (87)
T 1wh3_A 5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPK 45 (87)
T ss_dssp SSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCT
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCCh
Confidence 45688888878898888999999998763 33456653
No 215
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=45.23 E-value=21 Score=28.24 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=19.0
Q ss_pred HHHHHHhhhhcCHHHHHHHHHHHHH
Q psy1437 11 AQMAVKFDEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 11 ~~~Av~~D~~g~~~~A~~~Y~~ai~ 35 (232)
...|.-+-..|+|++|+.+|+++++
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~ 176 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFD 176 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4567777778888888888888765
No 216
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=44.98 E-value=24 Score=24.10 Aligned_cols=14 Identities=0% Similarity=-0.057 Sum_probs=7.1
Q ss_pred hHHHHHHHHHHHHh
Q psy1437 4 PEEVINAAQMAVKF 17 (232)
Q Consensus 4 ~~~A~~~~~~Av~~ 17 (232)
.++|+.+.+++++.
T Consensus 18 ~~~A~~~~~~~~~~ 31 (129)
T 2xev_A 18 YDDASQLFLSFLEL 31 (129)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555555554
No 217
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=44.44 E-value=37 Score=22.90 Aligned_cols=37 Identities=19% Similarity=0.158 Sum_probs=27.7
Q ss_pred CceeEEEEEeCCCCEEEEEecCCchHHHH----HHHCCCCc
Q psy1437 114 DEIVNITFIDKDGKRREIKGKVGDNVLYL----AHRYEIPM 150 (232)
Q Consensus 114 ~~mv~Vt~~~~~G~~~~v~~~~G~tLL~a----a~~~gi~l 150 (232)
+.++.|++...+|+.+.+++....|+.+. ....|++.
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~ 43 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPS 43 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCG
T ss_pred CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCH
Confidence 34678888888999989999999998764 23445554
No 218
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=44.25 E-value=84 Score=26.29 Aligned_cols=25 Identities=20% Similarity=0.174 Sum_probs=12.7
Q ss_pred HHHHHhhhhcCHHHHHHHHHHHHHH
Q psy1437 12 QMAVKFDEENQDEIAAYYYQAAARF 36 (232)
Q Consensus 12 ~~Av~~D~~g~~~~A~~~Y~~ai~~ 36 (232)
..|.-+-..|+|++|+.+|.+|+++
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~ 211 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALEL 211 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3444445555555555555555543
No 219
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=44.21 E-value=25 Score=30.82 Aligned_cols=32 Identities=13% Similarity=0.152 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHhhh---------------hcC-HHHHHHHHHHHHH
Q psy1437 4 PEEVINAAQMAVKFDE---------------ENQ-DEIAAYYYQAAAR 35 (232)
Q Consensus 4 ~~~A~~~~~~Av~~D~---------------~g~-~~~A~~~Y~~ai~ 35 (232)
.+.|+.+.++|++.+- .|+ |++|+.+|.+||+
T Consensus 113 ~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~ 160 (382)
T 2h6f_A 113 SERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE 160 (382)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHH
Confidence 4566776666666653 465 8888888877775
No 220
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=44.15 E-value=34 Score=25.45 Aligned_cols=14 Identities=14% Similarity=0.176 Sum_probs=5.8
Q ss_pred cCHHHHHHHHHHHH
Q psy1437 21 NQDEIAAYYYQAAA 34 (232)
Q Consensus 21 g~~~~A~~~Y~~ai 34 (232)
|++++|+.+|.+++
T Consensus 56 ~~~~~A~~~~~~a~ 69 (225)
T 2vq2_A 56 KVNDKAQESFRQAL 69 (225)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHH
Confidence 34444444444433
No 221
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=43.96 E-value=41 Score=22.60 Aligned_cols=33 Identities=9% Similarity=0.136 Sum_probs=24.9
Q ss_pred eEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCcc
Q psy1437 117 VNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPME 151 (232)
Q Consensus 117 v~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~ 151 (232)
++|++. +....++++++|.|+.+.+.+.|++..
T Consensus 3 v~Vkl~--g~~~~~~ev~~g~Tv~dLL~~Lgl~~~ 35 (74)
T 2l32_A 3 VTVEVV--GEETSEVAVDDDGTYADLVRAVDLSPH 35 (74)
T ss_dssp EEEECS--SSSEEEEECSTTCSHHHHHHTTCCCSS
T ss_pred EEEEEe--CccceeEEcCCCCcHHHHHHHcCCCcc
Confidence 455542 334456899999999999999999864
No 222
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=43.62 E-value=27 Score=30.05 Aligned_cols=31 Identities=16% Similarity=0.161 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhhhhcCHHHHHHHHHHHHH
Q psy1437 5 EEVINAAQMAVKFDEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 5 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 35 (232)
+.|-.+..+|..+-..|+|++|+.+|.++++
T Consensus 4 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~ 34 (514)
T 2gw1_A 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALE 34 (514)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 4566677777777788888888888877765
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=43.33 E-value=36 Score=23.41 Aligned_cols=30 Identities=13% Similarity=0.046 Sum_probs=22.3
Q ss_pred HHHHHHHHHhhhhcCHHHHHHHHHHHHHHH
Q psy1437 8 INAAQMAVKFDEENQDEIAAYYYQAAARFL 37 (232)
Q Consensus 8 ~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l 37 (232)
.+....+..+=+.|+|+.|+..|++|++.+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~ 35 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQL 35 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhh
Confidence 344455666677888999999999988765
No 224
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=42.53 E-value=26 Score=28.97 Aligned_cols=34 Identities=18% Similarity=0.124 Sum_probs=21.7
Q ss_pred CchHHHHHHHHHHHHhhhh-----------------cCHHHHHHHHHHHHH
Q psy1437 2 GLPEEVINAAQMAVKFDEE-----------------NQDEIAAYYYQAAAR 35 (232)
Q Consensus 2 ~~~~~A~~~~~~Av~~D~~-----------------g~~~~A~~~Y~~ai~ 35 (232)
+-.+.|+...++|++.+.. |+|++|+.+|+++++
T Consensus 144 g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~ 194 (291)
T 3mkr_A 144 DRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMAD 194 (291)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 4566777777777776521 566666666666554
No 225
>3o10_A Sacsin; all-helical domain, homodimerization, chaperone; 1.90A {Homo sapiens}
Probab=42.35 E-value=44 Score=25.22 Aligned_cols=39 Identities=13% Similarity=0.045 Sum_probs=33.8
Q ss_pred chHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh
Q psy1437 3 LPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA 41 (232)
Q Consensus 3 ~~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~ 41 (232)
.+..|......|-..=..|.|..|.+.=++|++.+++++
T Consensus 12 wl~~A~~dl~~A~~~~~~g~y~~a~F~aqQA~Ek~lKa~ 50 (141)
T 3o10_A 12 WLRQARANFSAARNDLHKNANEWVCFKCYLSTKLALIAA 50 (141)
T ss_dssp HHHHHHHHHHHHGGGTTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHhhHHhhCccceEeeehhHHHHHHHHHH
Confidence 366788888888888889999999999999999999986
No 226
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=42.16 E-value=46 Score=23.81 Aligned_cols=31 Identities=10% Similarity=0.040 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHhhhhcCHHHHHHHHHHHH
Q psy1437 4 PEEVINAAQMAVKFDEENQDEIAAYYYQAAA 34 (232)
Q Consensus 4 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai 34 (232)
..+|..++-+|-++=..+||.+|+.+..++.
T Consensus 50 e~~~r~~i~eak~~y~~~ny~ea~~l~~k~~ 80 (106)
T 2vkj_A 50 EKKARSLIAEGKDLFETANYGEALVFFEKAL 80 (106)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 3578889999999999999999998887754
No 227
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=42.01 E-value=64 Score=20.41 Aligned_cols=43 Identities=12% Similarity=0.196 Sum_probs=19.2
Q ss_pred HHHHHHHHHhc--cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 32 AAARFLLETAN--SSSDENVAAWRQKAQQYLNRAEVLKDKIQVMF 74 (232)
Q Consensus 32 ~ai~~l~~~~~--e~~~~~~~~~~~k~~eY~~RaE~lk~~~~~~~ 74 (232)
.|++|+.+.+- .++....+.++....+-..|.+.|++.++.-+
T Consensus 2 ~AlefIk~~LG~~~p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 2 SALDFLKHHLGAATPENPEIELLRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp --------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666653 34455566677777766666666666664433
No 228
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=41.83 E-value=39 Score=24.90 Aligned_cols=29 Identities=10% Similarity=0.024 Sum_probs=20.7
Q ss_pred HHHHHHHhhhhcCHHHHHHHHHHHHHHHH
Q psy1437 10 AAQMAVKFDEENQDEIAAYYYQAAARFLL 38 (232)
Q Consensus 10 ~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~ 38 (232)
+...|.-+-..|+|++|+.+|.+|++++.
T Consensus 69 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 97 (203)
T 3gw4_A 69 LHQVGMVERMAGNWDAARRCFLEERELLA 97 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 33444556677888888888888887654
No 229
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=41.71 E-value=26 Score=33.72 Aligned_cols=35 Identities=23% Similarity=0.241 Sum_probs=28.2
Q ss_pred CchHHHHHHHHHHHHhh---------------hhcCHHHHHHHHHHHHHH
Q psy1437 2 GLPEEVINAAQMAVKFD---------------EENQDEIAAYYYQAAARF 36 (232)
Q Consensus 2 ~~~~~A~~~~~~Av~~D---------------~~g~~~~A~~~Y~~ai~~ 36 (232)
+-.++|+.+.++|++.| ..|+|++|+.+|++|+++
T Consensus 23 G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l 72 (723)
T 4gyw_A 23 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 72 (723)
T ss_dssp TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44677888888887776 578999999999999974
No 230
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=41.67 E-value=34 Score=28.24 Aligned_cols=16 Identities=6% Similarity=-0.033 Sum_probs=7.7
Q ss_pred hcCHHHHHHHHHHHHH
Q psy1437 20 ENQDEIAAYYYQAAAR 35 (232)
Q Consensus 20 ~g~~~~A~~~Y~~ai~ 35 (232)
.|+|++|+.+|.++++
T Consensus 146 ~g~~~~A~~~~~~al~ 161 (365)
T 4eqf_A 146 TSHQQDACEALKNWIK 161 (365)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHH
Confidence 3445555555444443
No 231
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=41.51 E-value=36 Score=27.12 Aligned_cols=19 Identities=21% Similarity=0.184 Sum_probs=13.5
Q ss_pred hhhhcCHHHHHHHHHHHHH
Q psy1437 17 FDEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 17 ~D~~g~~~~A~~~Y~~ai~ 35 (232)
+-..|++++|+.+|.++++
T Consensus 216 ~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 216 LANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 3346888888888877765
No 232
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=41.50 E-value=46 Score=24.51 Aligned_cols=32 Identities=16% Similarity=-0.011 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHH
Q psy1437 5 EEVINAAQMAVKFDEENQDEIAAYYYQAAARF 36 (232)
Q Consensus 5 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 36 (232)
..+..+...|.-+-..|+|++|+.+|.+|+++
T Consensus 105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 136 (203)
T 3gw4_A 105 AASANAYEVATVALHFGDLAGARQEYEKSLVY 136 (203)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34556667777777788888888888888865
No 233
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=41.14 E-value=33 Score=28.78 Aligned_cols=30 Identities=13% Similarity=0.166 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHH
Q psy1437 6 EVINAAQMAVKFDEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 6 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 35 (232)
.+..+...|..+-..|+|++|+.+|.+|++
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~ 76 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQ 76 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 344444555555555555555555555544
No 234
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=40.89 E-value=34 Score=22.17 Aligned_cols=30 Identities=17% Similarity=0.139 Sum_probs=22.1
Q ss_pred eEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCc
Q psy1437 117 VNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPM 150 (232)
Q Consensus 117 v~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l 150 (232)
++|+ .++|+. ++++.|.|+++.+..-+..+
T Consensus 3 i~i~--~p~g~~--~~~~~g~T~~dla~~i~~~l 32 (73)
T 2kmm_A 3 VMVF--TPKGEI--KRLPQGATALDFAYSLHSDL 32 (73)
T ss_dssp EEEE--CTTCCE--EEECTTCBHHHHHHHHCSHH
T ss_pred EEEE--cCCCCE--EEcCCCCcHHHHHHHHhhcc
Confidence 4444 478876 67789999999998765444
No 235
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.04 E-value=44 Score=23.06 Aligned_cols=19 Identities=11% Similarity=-0.150 Sum_probs=10.7
Q ss_pred hhhhcCHHHHHHHHHHHHH
Q psy1437 17 FDEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 17 ~D~~g~~~~A~~~Y~~ai~ 35 (232)
+-..|+|++|+.+|.++++
T Consensus 75 ~~~~~~~~~A~~~~~~~~~ 93 (148)
T 2dba_A 75 HLKLEDYDKAETEASKAIE 93 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHh
Confidence 3344566666666666554
No 236
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=39.83 E-value=37 Score=26.84 Aligned_cols=25 Identities=12% Similarity=0.166 Sum_probs=10.9
Q ss_pred HHHHHHHhhhhcCHHHHHHHHHHHH
Q psy1437 10 AAQMAVKFDEENQDEIAAYYYQAAA 34 (232)
Q Consensus 10 ~~~~Av~~D~~g~~~~A~~~Y~~ai 34 (232)
+..+|..+-..|+|++|+.+|.+|+
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al 32 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAV 32 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3334444444444444444444443
No 237
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=39.75 E-value=45 Score=22.35 Aligned_cols=37 Identities=19% Similarity=0.158 Sum_probs=28.0
Q ss_pred CceeEEEEEeCCCCEEEEEecCCchHHHH----HHHCCCCc
Q psy1437 114 DEIVNITFIDKDGKRREIKGKVGDNVLYL----AHRYEIPM 150 (232)
Q Consensus 114 ~~mv~Vt~~~~~G~~~~v~~~~G~tLL~a----a~~~gi~l 150 (232)
+.++.|++...+|+.+.+.+.+..|+.+. ....|++.
T Consensus 15 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~ 55 (88)
T 4eew_A 15 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPS 55 (88)
T ss_dssp CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCG
T ss_pred CCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCH
Confidence 45688998888899889999999999763 33456654
No 238
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=39.59 E-value=37 Score=28.37 Aligned_cols=17 Identities=24% Similarity=0.202 Sum_probs=8.9
Q ss_pred hhhcCHHHHHHHHHHHH
Q psy1437 18 DEENQDEIAAYYYQAAA 34 (232)
Q Consensus 18 D~~g~~~~A~~~Y~~ai 34 (232)
-..|++++|+.+|++++
T Consensus 248 ~~~g~~~~A~~~~~~al 264 (388)
T 1w3b_A 248 YEQGLIDLAIDTYRRAI 264 (388)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 35555555555555544
No 239
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=39.32 E-value=35 Score=27.20 Aligned_cols=16 Identities=31% Similarity=0.351 Sum_probs=8.9
Q ss_pred hcCHHHHHHHHHHHHH
Q psy1437 20 ENQDEIAAYYYQAAAR 35 (232)
Q Consensus 20 ~g~~~~A~~~Y~~ai~ 35 (232)
.|+|++|+.+|.++++
T Consensus 138 ~~~~~~A~~~~~~a~~ 153 (330)
T 3hym_B 138 ESEHDQAMAAYFTAAQ 153 (330)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH
Confidence 3555666666555543
No 240
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=38.97 E-value=23 Score=30.75 Aligned_cols=18 Identities=6% Similarity=-0.075 Sum_probs=15.5
Q ss_pred chHHHHHHHHHHHHhhhh
Q psy1437 3 LPEEVINAAQMAVKFDEE 20 (232)
Q Consensus 3 ~~~~A~~~~~~Av~~D~~ 20 (232)
....|...+.||+++|..
T Consensus 178 ~l~~A~a~lerAleLDP~ 195 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPS 195 (301)
T ss_dssp HHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHHhCCC
Confidence 356788999999999988
No 241
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=38.92 E-value=50 Score=24.28 Aligned_cols=29 Identities=21% Similarity=0.313 Sum_probs=24.3
Q ss_pred CceeEEEEEeCCCCEEEEEecCCchHHHH
Q psy1437 114 DEIVNITFIDKDGKRREIKGKVGDNVLYL 142 (232)
Q Consensus 114 ~~mv~Vt~~~~~G~~~~v~~~~G~tLL~a 142 (232)
...+.|+|....|+.+++++.+.+|+.++
T Consensus 14 ~~~m~I~vKtl~G~t~~lev~~s~TV~~l 42 (116)
T 1wgh_A 14 ADMINLRLILVSGKTKEFLFSPNDSASDI 42 (116)
T ss_dssp SSSEEEEEECSSSCEEEEEECTTCBHHHH
T ss_pred CCeEEEEEEeCCCCEEEEEECCcCHHHHH
Confidence 44588999888899999999999998763
No 242
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=38.81 E-value=56 Score=27.95 Aligned_cols=23 Identities=4% Similarity=-0.122 Sum_probs=18.2
Q ss_pred hhhcCHHHHHHHHHHHHHHHHHH
Q psy1437 18 DEENQDEIAAYYYQAAARFLLET 40 (232)
Q Consensus 18 D~~g~~~~A~~~Y~~ai~~l~~~ 40 (232)
-..|+|++|+.+|.+++++....
T Consensus 105 ~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 105 YHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHcCChHHHHHHHHHHHHHhHhc
Confidence 35699999999999998765543
No 243
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=38.57 E-value=44 Score=24.41 Aligned_cols=16 Identities=19% Similarity=0.100 Sum_probs=7.4
Q ss_pred hhcCHHHHHHHHHHHH
Q psy1437 19 EENQDEIAAYYYQAAA 34 (232)
Q Consensus 19 ~~g~~~~A~~~Y~~ai 34 (232)
..|+|++|+.+|.+|+
T Consensus 56 ~~~~~~~A~~~~~~al 71 (177)
T 2e2e_A 56 WQNDYSNSLLAYRQAL 71 (177)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 4444444444444444
No 244
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=38.56 E-value=51 Score=22.57 Aligned_cols=31 Identities=13% Similarity=0.040 Sum_probs=24.9
Q ss_pred CceeEEEEEeCCCCEEEEEecCCchHHHHHH
Q psy1437 114 DEIVNITFIDKDGKRREIKGKVGDNVLYLAH 144 (232)
Q Consensus 114 ~~mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~ 144 (232)
..++.|+|...+|+...+++.+..|+.+.=.
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~ 35 (95)
T 1wia_A 5 SSGINVRLKFLNDTEELAVARPEDTVGTLKS 35 (95)
T ss_dssp CCSEEEEEEETTTEEEEEEECSSSBHHHHHH
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHH
Confidence 4568888877889888899999999987544
No 245
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=38.41 E-value=26 Score=31.67 Aligned_cols=13 Identities=8% Similarity=-0.112 Sum_probs=7.1
Q ss_pred HHHHHHHCCCCcc
Q psy1437 139 VLYLAHRYEIPME 151 (232)
Q Consensus 139 LL~aa~~~gi~l~ 151 (232)
|...+.+.++++-
T Consensus 274 l~~~i~~~~~Div 286 (568)
T 2vsy_A 274 TAKHIRHHGIDLL 286 (568)
T ss_dssp HHHHHHHTTCSEE
T ss_pred HHHHHHhCCCCEE
Confidence 4445556666643
No 246
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=38.40 E-value=20 Score=24.97 Aligned_cols=27 Identities=19% Similarity=0.341 Sum_probs=21.5
Q ss_pred eeEEEEEeCCCCEEEEEec--CCchHHHH
Q psy1437 116 IVNITFIDKDGKRREIKGK--VGDNVLYL 142 (232)
Q Consensus 116 mv~Vt~~~~~G~~~~v~~~--~G~tLL~a 142 (232)
|+.|+|....|+..++++. +.+|+.+.
T Consensus 1 mmqI~VKtl~g~~~~i~v~v~~~~TV~~l 29 (87)
T 2lxa_A 1 MVHLTLKKIQAPKFSIEHDFSPSDTILQI 29 (87)
T ss_dssp CCEEEEEECSSSCEECCEECCTTCBHHHH
T ss_pred CEEEEEEcCCCCEEEEEEcCCCCCcHHHH
Confidence 6788988889987777655 89999874
No 247
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=38.30 E-value=89 Score=20.96 Aligned_cols=26 Identities=4% Similarity=0.029 Sum_probs=17.9
Q ss_pred HHHHHHHhhhhcCHHHHHHHHHHHHH
Q psy1437 10 AAQMAVKFDEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 10 ~~~~Av~~D~~g~~~~A~~~Y~~ai~ 35 (232)
+...|.-+-..|+|++|+.+|.++++
T Consensus 42 ~~~lg~~~~~~~~~~~A~~~~~~~~~ 67 (129)
T 2xev_A 42 LYWLGESYYATRNFQLAEAQFRDLVS 67 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34556666677788888777777664
No 248
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=38.20 E-value=42 Score=27.46 Aligned_cols=21 Identities=29% Similarity=0.292 Sum_probs=16.4
Q ss_pred HHhhhhcCHHHHHHHHHHHHH
Q psy1437 15 VKFDEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 15 v~~D~~g~~~~A~~~Y~~ai~ 35 (232)
.-+-..|+|++|+.+|.++++
T Consensus 259 ~~~~~~g~~~~A~~~~~~al~ 279 (368)
T 1fch_A 259 ATLANGNQSEEAVAAYRRALE 279 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 334467999999999999876
No 249
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=38.00 E-value=99 Score=21.99 Aligned_cols=52 Identities=8% Similarity=0.087 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHhc---cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 24 EIAAYYYQAAARFLLETAN---SSSDENVAAWRQKAQQYLNRAEVLKDKIQVMFL 75 (232)
Q Consensus 24 ~~A~~~Y~~ai~~l~~~~~---e~~~~~~~~~~~k~~eY~~RaE~lk~~~~~~~~ 75 (232)
.++-....+|-++|-++-. .-++..|..|..|+.+|..--..||.-++.-..
T Consensus 41 ~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~elk~~~~ 95 (102)
T 1vcs_A 41 ANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRI 95 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455666666655422 346778889999999999999999888766543
No 250
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=37.95 E-value=41 Score=25.52 Aligned_cols=33 Identities=21% Similarity=0.215 Sum_probs=21.1
Q ss_pred chHHHHHHHHHHHHhh---------------hhcCHHHHHHHHHHHHH
Q psy1437 3 LPEEVINAAQMAVKFD---------------EENQDEIAAYYYQAAAR 35 (232)
Q Consensus 3 ~~~~A~~~~~~Av~~D---------------~~g~~~~A~~~Y~~ai~ 35 (232)
-.++|+.+.++|++.+ ..|++++|+.+|.++++
T Consensus 140 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 187 (243)
T 2q7f_A 140 QPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTE 187 (243)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4566777777777664 34666666666666554
No 251
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=37.95 E-value=50 Score=21.82 Aligned_cols=28 Identities=21% Similarity=0.177 Sum_probs=23.0
Q ss_pred ceeEEEEEeCCCCEEEEEecCCchHHHH
Q psy1437 115 EIVNITFIDKDGKRREIKGKVGDNVLYL 142 (232)
Q Consensus 115 ~mv~Vt~~~~~G~~~~v~~~~G~tLL~a 142 (232)
.++.|++...+|+...+++.+..|+.+.
T Consensus 4 ~~m~i~vk~~~g~~~~~~v~~~~TV~~l 31 (85)
T 2wyq_A 4 MAVTITLKTLQQQTFKIRMEPDETVKVL 31 (85)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHH
T ss_pred ceEEEEEEECCCCEEEEEECCCCCHHHH
Confidence 3578888878898889999999998763
No 252
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=37.90 E-value=49 Score=21.60 Aligned_cols=34 Identities=12% Similarity=0.152 Sum_probs=26.0
Q ss_pred eEEEEEeCCCCEEEEEecCCchHHHH----HHHCCCCc
Q psy1437 117 VNITFIDKDGKRREIKGKVGDNVLYL----AHRYEIPM 150 (232)
Q Consensus 117 v~Vt~~~~~G~~~~v~~~~G~tLL~a----a~~~gi~l 150 (232)
..|++...+|+.+.+++.+..|+.+. ....|++.
T Consensus 5 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~ 42 (79)
T 3phx_B 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQD 42 (79)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCG
T ss_pred EEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCH
Confidence 67888788999989999999999753 33456654
No 253
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=37.83 E-value=1.1e+02 Score=25.54 Aligned_cols=30 Identities=23% Similarity=0.130 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhhhhcCHHHHHHHHHHHHHH
Q psy1437 7 VINAAQMAVKFDEENQDEIAAYYYQAAARF 36 (232)
Q Consensus 7 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 36 (232)
|..+...|.-+-..|+|++|+.+|.+|+++
T Consensus 184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 213 (383)
T 3ulq_A 184 LQCHSLFATNFLDLKQYEDAISHFQKAYSM 213 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 344445555555555555555555555544
No 254
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=37.74 E-value=35 Score=27.95 Aligned_cols=32 Identities=6% Similarity=-0.077 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHhh----------------hhcCHHHHHHHHHHHHH
Q psy1437 4 PEEVINAAQMAVKFD----------------EENQDEIAAYYYQAAAR 35 (232)
Q Consensus 4 ~~~A~~~~~~Av~~D----------------~~g~~~~A~~~Y~~ai~ 35 (232)
.+.|+.+.++|++.+ ..|++++|+.+|..|++
T Consensus 150 ~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~ 197 (308)
T 2ond_A 150 IKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLK 197 (308)
T ss_dssp HHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345666666666543 14677777777777664
No 255
>4etr_A Putative uncharacterized protein; DUF2383, domain of unknown function, cytoplasmic, unknown FU; 2.25A {Pseudomonas aeruginosa}
Probab=37.51 E-value=1.3e+02 Score=22.65 Aligned_cols=57 Identities=11% Similarity=0.075 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 5 EEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETANSSSDENVAAWRQKAQQYLNRAEVLKDKIQV 72 (232)
Q Consensus 5 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~e~~~~~~~~~~~k~~eY~~RaE~lk~~~~~ 72 (232)
++-++.++..++... .++.-|.+|++. -.++..|..|...+.+...-|.+|+..+..
T Consensus 10 ~~~i~~Ln~Li~~~~-----D~~~gY~~aae~------~~d~~lk~~f~~~a~~~~~~~~eL~~~i~~ 66 (153)
T 4etr_A 10 DDTLDVLNDLLQTSK-----DGEAGFHACAED------LRDPQLKAAMLEQSRDCAAAADELERIVLE 66 (153)
T ss_dssp HHHHHHHHHHHHHHH-----HHHHHHHHHHHT------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh-----HHHHHHHHHHHH------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777776654 455667776652 248899999999999999999999999854
No 256
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=37.15 E-value=51 Score=22.28 Aligned_cols=35 Identities=14% Similarity=0.186 Sum_probs=26.3
Q ss_pred ceeEEEEEeCCCCEEEEEecCCchHHHH----HHHCCCC
Q psy1437 115 EIVNITFIDKDGKRREIKGKVGDNVLYL----AHRYEIP 149 (232)
Q Consensus 115 ~mv~Vt~~~~~G~~~~v~~~~G~tLL~a----a~~~gi~ 149 (232)
.++.|++...+|+...+++.+..|+.+. ....|++
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip 41 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQ 41 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSC
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCC
Confidence 3578888878898888999999998764 3345655
No 257
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=37.13 E-value=44 Score=27.29 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=15.6
Q ss_pred HHHHHhhhhcCHHHHHHHHHHHHH
Q psy1437 12 QMAVKFDEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 12 ~~Av~~D~~g~~~~A~~~Y~~ai~ 35 (232)
..|.-+-..|+|++|+.+|+++++
T Consensus 222 ~l~~~~~~~g~~~~A~~~~~~al~ 245 (368)
T 1fch_A 222 GLGVLFNLSGEYDKAVDCFTAALS 245 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444455888888887777764
No 258
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=37.06 E-value=28 Score=28.81 Aligned_cols=17 Identities=12% Similarity=0.018 Sum_probs=8.3
Q ss_pred cCHHHHHHHHHHHHHHH
Q psy1437 21 NQDEIAAYYYQAAARFL 37 (232)
Q Consensus 21 g~~~~A~~~Y~~ai~~l 37 (232)
|+|++|+.+|.+|+++.
T Consensus 61 g~~~~A~~~~~~al~~~ 77 (406)
T 3sf4_A 61 HDYAKALEYHHHDLTLA 77 (406)
T ss_dssp TCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHH
Confidence 44455555555554433
No 259
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=36.91 E-value=55 Score=23.22 Aligned_cols=14 Identities=14% Similarity=0.109 Sum_probs=5.9
Q ss_pred cCHHHHHHHHHHHH
Q psy1437 21 NQDEIAAYYYQAAA 34 (232)
Q Consensus 21 g~~~~A~~~Y~~ai 34 (232)
|++++|+.+|.+++
T Consensus 90 ~~~~~A~~~~~~~~ 103 (186)
T 3as5_A 90 QKYDLAVPLLIKVA 103 (186)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 44444444444433
No 260
>2jpu_A ORF C02003 protein; solution structure, SSR10, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} PDB: 2q00_A
Probab=36.72 E-value=65 Score=24.33 Aligned_cols=41 Identities=17% Similarity=0.031 Sum_probs=36.4
Q ss_pred CCchHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh
Q psy1437 1 MGLPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA 41 (232)
Q Consensus 1 ~~~~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~ 41 (232)
|.++..|..+.+.|-++=.+|+.-+|=.-|-.|++..++++
T Consensus 1 ~~~l~lAe~yL~EA~ell~kGD~vQAsEK~ykAaeeaiKAL 41 (129)
T 2jpu_A 1 MSISTSAEVYYEEAEEFLSKGDLVQACEKYYKAAEEAIKLL 41 (129)
T ss_dssp CCSSCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 66788899999999999999999888888888888888887
No 261
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=36.41 E-value=45 Score=23.16 Aligned_cols=38 Identities=26% Similarity=0.431 Sum_probs=28.4
Q ss_pred CCceeEEEEEeCCCCEEEEEecCCchHHHH----HHHCCCCc
Q psy1437 113 EDEIVNITFIDKDGKRREIKGKVGDNVLYL----AHRYEIPM 150 (232)
Q Consensus 113 ~~~mv~Vt~~~~~G~~~~v~~~~G~tLL~a----a~~~gi~l 150 (232)
...++.|++.+.+|+.+.+.+.+.+|+.+. +.+.||+.
T Consensus 18 ~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~ 59 (97)
T 1wyw_B 18 EGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPM 59 (97)
T ss_dssp -CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCG
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCh
Confidence 455689999888999889999999988653 33456653
No 262
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=36.08 E-value=55 Score=22.93 Aligned_cols=40 Identities=13% Similarity=0.257 Sum_probs=29.3
Q ss_pred CCCCCCceeEEEEEeCCCCEEEEEecCCchHHHH----HHHCCCC
Q psy1437 109 DPKSEDEIVNITFIDKDGKRREIKGKVGDNVLYL----AHRYEIP 149 (232)
Q Consensus 109 ~~~~~~~mv~Vt~~~~~G~~~~v~~~~G~tLL~a----a~~~gi~ 149 (232)
.|+..+.+++|+|...+|+ ..+++.+..|+.+. ....|++
T Consensus 15 ~~~~~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip 58 (100)
T 1yqb_A 15 VPRGSPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAH 58 (100)
T ss_dssp CCSCCTTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCC
T ss_pred CCCCCCCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcC
Confidence 4555678899999877775 68999999998763 3344665
No 263
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=35.77 E-value=72 Score=21.27 Aligned_cols=38 Identities=16% Similarity=0.055 Sum_probs=27.5
Q ss_pred CCceeEEEEEeCCC-CEEEE-EecCCchHHHH----HHHCCCCc
Q psy1437 113 EDEIVNITFIDKDG-KRREI-KGKVGDNVLYL----AHRYEIPM 150 (232)
Q Consensus 113 ~~~mv~Vt~~~~~G-~~~~v-~~~~G~tLL~a----a~~~gi~l 150 (232)
...++.|++...+| +.+.+ .+.+..|+.+. ....|++.
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~ 47 (89)
T 1wy8_A 4 GSSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRP 47 (89)
T ss_dssp CSSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCT
T ss_pred CCCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcCh
Confidence 34668888887888 67889 49999998764 33456653
No 264
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=35.74 E-value=57 Score=22.93 Aligned_cols=33 Identities=12% Similarity=0.202 Sum_probs=25.2
Q ss_pred CCCCCCceeEEEEEeCCCCEEEEEecCCchHHHH
Q psy1437 109 DPKSEDEIVNITFIDKDGKRREIKGKVGDNVLYL 142 (232)
Q Consensus 109 ~~~~~~~mv~Vt~~~~~G~~~~v~~~~G~tLL~a 142 (232)
++...+.+++|+|...+|+ +.+++....|+.+.
T Consensus 10 ~~~~~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~L 42 (106)
T 1wx7_A 10 APVQDPHLIKVTVKTPKDK-EDFSVTDTCTIQQL 42 (106)
T ss_dssp SCCCCSSEEEEEEECSSCE-EEEEEETTCCHHHH
T ss_pred CCCCCCceEEEEEEeCCCc-EEEEECCCCcHHHH
Confidence 3444578899998877775 68999999998764
No 265
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=35.60 E-value=52 Score=21.55 Aligned_cols=35 Identities=17% Similarity=0.191 Sum_probs=26.5
Q ss_pred eeEEEEEeCCCCEEEEEecCCchHHHH----HHHCCCCc
Q psy1437 116 IVNITFIDKDGKRREIKGKVGDNVLYL----AHRYEIPM 150 (232)
Q Consensus 116 mv~Vt~~~~~G~~~~v~~~~G~tLL~a----a~~~gi~l 150 (232)
++.|++...+|+...+++.+..|+.+. ....|++.
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~ 41 (85)
T 3mtn_B 3 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 41 (85)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCG
T ss_pred eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCh
Confidence 467888888899889999999999764 33456654
No 266
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=35.31 E-value=33 Score=29.14 Aligned_cols=20 Identities=10% Similarity=0.077 Sum_probs=12.5
Q ss_pred HhhhhcCHHHHHHHHHHHHH
Q psy1437 16 KFDEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 16 ~~D~~g~~~~A~~~Y~~ai~ 35 (232)
-+-..|++++|+.+|+++++
T Consensus 304 ~~~~~g~~~~A~~~~~~a~~ 323 (450)
T 2y4t_A 304 CFSKDEKPVEAIRVCSEVLQ 323 (450)
T ss_dssp HHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 33445777777777776654
No 267
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=35.31 E-value=36 Score=26.80 Aligned_cols=14 Identities=0% Similarity=-0.173 Sum_probs=7.3
Q ss_pred hHHHHHHHHHHHHh
Q psy1437 4 PEEVINAAQMAVKF 17 (232)
Q Consensus 4 ~~~A~~~~~~Av~~ 17 (232)
.+.|+...+++++.
T Consensus 68 ~~~A~~~~~~~l~~ 81 (261)
T 3qky_A 68 YLLAASEYERFIQI 81 (261)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555555554
No 268
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=35.31 E-value=34 Score=32.15 Aligned_cols=32 Identities=3% Similarity=-0.118 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHhh---------------hhcCHHHHHHHHHHHHH
Q psy1437 4 PEEVINAAQMAVKFD---------------EENQDEIAAYYYQAAAR 35 (232)
Q Consensus 4 ~~~A~~~~~~Av~~D---------------~~g~~~~A~~~Y~~ai~ 35 (232)
.++|+...++|++.| ..|+|++|+..|++|++
T Consensus 449 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 495 (681)
T 2pzi_A 449 VAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLD 495 (681)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555555543 45677777777777664
No 269
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=35.18 E-value=48 Score=24.22 Aligned_cols=16 Identities=13% Similarity=0.021 Sum_probs=10.2
Q ss_pred chHHHHHHHHHHHHhh
Q psy1437 3 LPEEVINAAQMAVKFD 18 (232)
Q Consensus 3 ~~~~A~~~~~~Av~~D 18 (232)
-.++|+.+.++|++.+
T Consensus 59 ~~~~A~~~~~~al~~~ 74 (177)
T 2e2e_A 59 DYSNSLLAYRQALQLR 74 (177)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC
Confidence 3556677777776655
No 270
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=34.68 E-value=62 Score=28.34 Aligned_cols=53 Identities=13% Similarity=0.075 Sum_probs=36.7
Q ss_pred HHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHhccC--ChHHHHHHHHHHHHHHH
Q psy1437 9 NAAQMAVKFDEENQDEIAAYYYQAAARFLLETANSS--SDENVAAWRQKAQQYLN 61 (232)
Q Consensus 9 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~e~--~~~~~~~~~~k~~eY~~ 61 (232)
+-++.|-++=.+|++++|+...++.+..+...+-+. .......+...+.||+-
T Consensus 116 ~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYil 170 (325)
T 3mv2_A 116 EKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYIL 170 (325)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHH
Confidence 457788888899999999999999775444333222 22333357778888874
No 271
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=34.64 E-value=29 Score=24.73 Aligned_cols=27 Identities=15% Similarity=0.263 Sum_probs=21.1
Q ss_pred eeEEEEEeCCCCEEEEEecCCchHHHH
Q psy1437 116 IVNITFIDKDGKRREIKGKVGDNVLYL 142 (232)
Q Consensus 116 mv~Vt~~~~~G~~~~v~~~~G~tLL~a 142 (232)
|+.|+|...+|+...|++.+..|+.+.
T Consensus 1 mm~I~Vk~~~g~~~~l~v~~~~TV~~L 27 (106)
T 3m62_B 1 MVSLTFKNFKKEKVPLDLEPSNTILET 27 (106)
T ss_dssp --CEEEECTTCCEEEECCCTTSBHHHH
T ss_pred CEEEEEEeCCCCEEEEEECCCCcHHHH
Confidence 567888777899888999999999864
No 272
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=34.55 E-value=53 Score=25.40 Aligned_cols=12 Identities=8% Similarity=0.086 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q psy1437 5 EEVINAAQMAVK 16 (232)
Q Consensus 5 ~~A~~~~~~Av~ 16 (232)
++|+...+++++
T Consensus 21 ~~A~~~~~~~~~ 32 (225)
T 2yhc_A 21 RQAITQLEALDN 32 (225)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 273
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=34.27 E-value=87 Score=26.94 Aligned_cols=27 Identities=7% Similarity=-0.257 Sum_probs=14.7
Q ss_pred HHHHHHHHHhhhhcCHHHHHHHHHHHH
Q psy1437 8 INAAQMAVKFDEENQDEIAAYYYQAAA 34 (232)
Q Consensus 8 ~~~~~~Av~~D~~g~~~~A~~~Y~~ai 34 (232)
.-+...|.-+-+.|+|++|+.+|.+|+
T Consensus 274 ~~~~nla~~~~~~g~~~~A~~~~~~al 300 (370)
T 1ihg_A 274 SCVLNIGACKLKMSDWQGAVDSCLEAL 300 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 334455555555555555555555555
No 274
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=34.14 E-value=1.4e+02 Score=24.71 Aligned_cols=27 Identities=7% Similarity=-0.004 Sum_probs=19.8
Q ss_pred HHHHhhhhcCHHHHHHHHHHHHHHHHH
Q psy1437 13 MAVKFDEENQDEIAAYYYQAAARFLLE 39 (232)
Q Consensus 13 ~Av~~D~~g~~~~A~~~Y~~ai~~l~~ 39 (232)
.|.-+-..|+|++|+.+|.+|++++..
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~ 158 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQ 158 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 334445678999999999999887543
No 275
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=33.92 E-value=38 Score=28.62 Aligned_cols=24 Identities=8% Similarity=-0.101 Sum_probs=14.6
Q ss_pred HHHHHhhhhcCHHHHHHHHHHHHH
Q psy1437 12 QMAVKFDEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 12 ~~Av~~D~~g~~~~A~~~Y~~ai~ 35 (232)
..|.-+-+.|+|++|+.+|.+|++
T Consensus 235 nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 235 NIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444455677777777777664
No 276
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=33.76 E-value=1.6e+02 Score=22.85 Aligned_cols=19 Identities=16% Similarity=-0.097 Sum_probs=9.4
Q ss_pred hhcCHHHHHHHHHHHHHHH
Q psy1437 19 EENQDEIAAYYYQAAARFL 37 (232)
Q Consensus 19 ~~g~~~~A~~~Y~~ai~~l 37 (232)
..|+|++|+.+|.+|++..
T Consensus 275 ~~g~~~~A~~~~~~a~~~~ 293 (338)
T 3ro2_A 275 LLQDYEKAIDYHLKHLAIA 293 (338)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHH
Confidence 3455555555555555433
No 277
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=33.62 E-value=39 Score=29.35 Aligned_cols=15 Identities=13% Similarity=0.286 Sum_probs=7.9
Q ss_pred hHHHHHHHHHHHHhh
Q psy1437 4 PEEVINAAQMAVKFD 18 (232)
Q Consensus 4 ~~~A~~~~~~Av~~D 18 (232)
.++|+...++|++.+
T Consensus 394 ~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 394 FDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC
Confidence 445555555555544
No 278
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=33.40 E-value=45 Score=27.81 Aligned_cols=32 Identities=25% Similarity=0.085 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHhh---------------hhcCHHHHHHHHHHHHH
Q psy1437 4 PEEVINAAQMAVKFD---------------EENQDEIAAYYYQAAAR 35 (232)
Q Consensus 4 ~~~A~~~~~~Av~~D---------------~~g~~~~A~~~Y~~ai~ 35 (232)
.+.|+...++|++.| ..|+|++|+..|.++++
T Consensus 185 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 231 (388)
T 1w3b_A 185 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS 231 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455666666655543 55888888877776654
No 279
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=33.13 E-value=48 Score=23.47 Aligned_cols=34 Identities=15% Similarity=0.016 Sum_probs=21.8
Q ss_pred CCCCCCceeEEEEEeCCCC--EEEEEecCCchHHHH
Q psy1437 109 DPKSEDEIVNITFIDKDGK--RREIKGKVGDNVLYL 142 (232)
Q Consensus 109 ~~~~~~~mv~Vt~~~~~G~--~~~v~~~~G~tLL~a 142 (232)
++......+.|+|..++|. ..+|++.+..|+.+.
T Consensus 16 ~~~~~~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~L 51 (99)
T 2kdb_A 16 NLYFQGHPVTLIIKAPNQKYSDQTISCFLNWTVGKL 51 (99)
T ss_dssp -------CEEEEEECTTSSSCCEEEEECTTSBHHHH
T ss_pred CCCCCCCeEEEEEEcCCCCEEEEEEEcCCCCHHHHH
Confidence 4444455688998888887 457888999998763
No 280
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=32.50 E-value=58 Score=25.17 Aligned_cols=25 Identities=16% Similarity=0.154 Sum_probs=16.1
Q ss_pred HHHHHHhhhhcCHHHHHHHHHHHHH
Q psy1437 11 AQMAVKFDEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 11 ~~~Av~~D~~g~~~~A~~~Y~~ai~ 35 (232)
...|..+-..|+|++|+.+|.+|++
T Consensus 47 ~~l~~~~~~~~~~~~A~~~~~~al~ 71 (275)
T 1xnf_A 47 YERGVLYDSLGLRALARNDFSQALA 71 (275)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3344444456777888777777765
No 281
>3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix bundle, structural genomics protein structure initiative; HET: PGE; 2.12A {Streptococcus mutans}
Probab=32.29 E-value=2e+02 Score=24.53 Aligned_cols=38 Identities=8% Similarity=0.017 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh
Q psy1437 4 PEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA 41 (232)
Q Consensus 4 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~ 41 (232)
...|-.+.++|-+...+|+-..|-.+|..|..|+..+-
T Consensus 66 ~~~a~~~~~~a~~~~~~g~~~~a~~~~~~A~~~~~~a~ 103 (405)
T 3fnb_A 66 NEHADYLEDEVERVKKVGYRDLISHLYFSACFSIRAAL 103 (405)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 45577788889899999999999999999999988874
No 282
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=32.12 E-value=1.4e+02 Score=26.01 Aligned_cols=50 Identities=12% Similarity=-0.031 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhh---------------hhcCHHHHHHHHHHHHHHHHHHh-ccCChHHHHHHHH
Q psy1437 5 EEVINAAQMAVKFD---------------EENQDEIAAYYYQAAARFLLETA-NSSSDENVAAWRQ 54 (232)
Q Consensus 5 ~~A~~~~~~Av~~D---------------~~g~~~~A~~~Y~~ai~~l~~~~-~e~~~~~~~~~~~ 54 (232)
..|+..+.+++..| ..|++.+|+..|...-+.|..-+ -+.++..+..++.
T Consensus 188 ~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~ 253 (388)
T 2ff4_A 188 SAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNER 253 (388)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 44555555555554 57888888888888777777666 4556666654433
No 283
>3iqc_A FLIS, flagellar protein; chaperone, flagellum; 2.70A {Helicobacter pylori} SCOP: a.24.19.0 PDB: 3k1i_A
Probab=31.96 E-value=1.6e+02 Score=21.93 Aligned_cols=39 Identities=21% Similarity=0.238 Sum_probs=33.8
Q ss_pred chHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh
Q psy1437 3 LPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA 41 (232)
Q Consensus 3 ~~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~ 41 (232)
+++-|+.++++|...=.+|+++++-..-.+|++.+..+.
T Consensus 32 Lydgal~~l~~A~~ai~~~d~~~k~~~i~KA~~Ii~~L~ 70 (131)
T 3iqc_A 32 LYEGILRFSSQAKRCIENEDIEKKIYYINRVTDIFTELL 70 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 367799999999999999999999999999998887654
No 284
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=31.41 E-value=61 Score=21.10 Aligned_cols=35 Identities=23% Similarity=0.398 Sum_probs=26.2
Q ss_pred eeEEEEEeCCCCEEEEEecCCchHHHH----HHHCCCCc
Q psy1437 116 IVNITFIDKDGKRREIKGKVGDNVLYL----AHRYEIPM 150 (232)
Q Consensus 116 mv~Vt~~~~~G~~~~v~~~~G~tLL~a----a~~~gi~l 150 (232)
.+.|++.+.+|+...+++.+.+|+.+. +.+.|++.
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~ 41 (79)
T 2uyz_B 3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPM 41 (79)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCG
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCc
Confidence 367888888999889999999988653 33456653
No 285
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=30.96 E-value=56 Score=25.27 Aligned_cols=28 Identities=11% Similarity=-0.127 Sum_probs=22.0
Q ss_pred HHHHHHHHHhhhhcCHHHHHHHHHHHHH
Q psy1437 8 INAAQMAVKFDEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 8 ~~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 35 (232)
..+-.+|..+-..|+|++|+.+|.++++
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~ 32 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDN 32 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456677888888999999888888775
No 286
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=30.82 E-value=69 Score=22.41 Aligned_cols=37 Identities=14% Similarity=0.227 Sum_probs=26.1
Q ss_pred CCceeEEEEEeCCCCEEEEEecCCchHHHH----HHHCCCCc
Q psy1437 113 EDEIVNITFIDKDGKRREIKGKVGDNVLYL----AHRYEIPM 150 (232)
Q Consensus 113 ~~~mv~Vt~~~~~G~~~~v~~~~G~tLL~a----a~~~gi~l 150 (232)
.+..+.|++... |....+++.+..|+.+. ....|++.
T Consensus 22 ~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~ 62 (101)
T 2klc_A 22 HPKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHT 62 (101)
T ss_dssp -CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCG
T ss_pred CCCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcCh
Confidence 455688888766 77788999999998763 33456653
No 287
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=30.56 E-value=58 Score=29.29 Aligned_cols=33 Identities=27% Similarity=0.226 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHh---------------hhhcCHHHHHHHHHHHHHH
Q psy1437 4 PEEVINAAQMAVKF---------------DEENQDEIAAYYYQAAARF 36 (232)
Q Consensus 4 ~~~A~~~~~~Av~~---------------D~~g~~~~A~~~Y~~ai~~ 36 (232)
.++|+...++|++. -..|+|++|+.+|++|++.
T Consensus 73 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 120 (568)
T 2vsy_A 73 HAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL 120 (568)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45566666555554 4569999999999998864
No 288
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Probab=29.96 E-value=29 Score=20.33 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=17.8
Q ss_pred EEecCCchHHHHHHHCCCCcc
Q psy1437 131 IKGKVGDNVLYLAHRYEIPME 151 (232)
Q Consensus 131 v~~~~G~tLL~aa~~~gi~l~ 151 (232)
..+..|+||-..|.+.|+.+.
T Consensus 5 y~V~~GDtl~~Ia~~~~~~~~ 25 (48)
T 1e0g_A 5 YRVRKGDSLSSIAKRHGVNIK 25 (48)
T ss_dssp EEECTTCCHHHHHHHHTCCHH
T ss_pred EEEcCCCcHHHHHHHHCcCHH
Confidence 566899999999999988754
No 289
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=29.94 E-value=72 Score=23.56 Aligned_cols=30 Identities=13% Similarity=0.057 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHH
Q psy1437 6 EVINAAQMAVKFDEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 6 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 35 (232)
.+..+...|..+-..|++++|+.+|.++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 36 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALK 36 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 344556667777777888888888877765
No 290
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=29.60 E-value=54 Score=21.64 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=16.1
Q ss_pred HHHHHhhhhcCHHHHHHHHHHHHH
Q psy1437 12 QMAVKFDEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 12 ~~Av~~D~~g~~~~A~~~Y~~ai~ 35 (232)
..|..+-..|++++|+.+|.++++
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~ 29 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALE 29 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHH
Confidence 445555667777777777777654
No 291
>1jy2_N Fibrinogen alpha chain; fragment E, disulfide bonds, asymmetry, coiled- coil, beta-sheet, blood clotting; 1.40A {Bos taurus} SCOP: h.1.8.1 PDB: 1jy3_N
Probab=29.41 E-value=86 Score=19.91 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy1437 51 AWRQKAQQYLNRAEVLKDKIQ 71 (232)
Q Consensus 51 ~~~~k~~eY~~RaE~lk~~~~ 71 (232)
.|-..=+.|.+|+++|++.|.
T Consensus 29 lid~~~~d~~~RI~kl~~~L~ 49 (53)
T 1jy2_N 29 LIDEVDQDFTSRINKLRDSLF 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 445556788999999999884
No 292
>1vh6_A Flagellar protein FLIS; structural genomics, unknown function; HET: MSE; 2.50A {Bacillus subtilis} SCOP: a.24.19.1
Probab=29.37 E-value=1e+02 Score=23.48 Aligned_cols=38 Identities=16% Similarity=0.085 Sum_probs=32.4
Q ss_pred chHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHH
Q psy1437 3 LPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLET 40 (232)
Q Consensus 3 ~~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~ 40 (232)
+++-|+.++.+|...=.+|+++++-..-.+|++.+..+
T Consensus 29 Lydgal~~l~~A~~aie~~d~~~k~~~i~KA~~Ii~eL 66 (145)
T 1vh6_A 29 LYNGCLKFIRLAAQAIENDDMERKNENLIKAQNIIQEL 66 (145)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 36779999999999999999999998888988887554
No 293
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=29.30 E-value=68 Score=22.29 Aligned_cols=38 Identities=5% Similarity=-0.055 Sum_probs=28.1
Q ss_pred CCCceeEEEEEeCCCCEE-EEEecCCchHHHH----HHHCCCCc
Q psy1437 112 SEDEIVNITFIDKDGKRR-EIKGKVGDNVLYL----AHRYEIPM 150 (232)
Q Consensus 112 ~~~~mv~Vt~~~~~G~~~-~v~~~~G~tLL~a----a~~~gi~l 150 (232)
+.+.+++|++. ..|+.+ .|++....|+.+. ....||+.
T Consensus 3 ~~~~~m~i~Vk-~~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~ 45 (96)
T 1wgg_A 3 SGSSGYSVTVK-WGKEKFEGVELNTDEPPMVFKAQLFALTGVQP 45 (96)
T ss_dssp SCCCEEEEEEE-ETTEEEEEEEEESSSCHHHHHHHHHHHTCCCT
T ss_pred CCCcEEEEEEE-ECCEEEEEEEECCCCcHHHHHHHHHHHHCcCH
Confidence 34578899987 468888 5999999998764 34567764
No 294
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=29.29 E-value=24 Score=24.11 Aligned_cols=26 Identities=19% Similarity=0.353 Sum_probs=16.8
Q ss_pred hHHHHHHHCCCC-----ccCCCCCCcccccCE
Q psy1437 138 NVLYLAHRYEIP-----MEGACEASLACTTCH 164 (232)
Q Consensus 138 tLL~aa~~~gi~-----l~~~CgG~G~CgtC~ 164 (232)
.-|+.+.+.|.- ..+.|. .|.|++|.
T Consensus 35 rdL~~Le~~G~l~R~~~~GgaC~-~g~C~~C~ 65 (78)
T 1xn7_A 35 AMLQQLESMGKAVRIQEEPDGCL-SGSCKSCP 65 (78)
T ss_dssp HHHHHHHHHTSEEEECCCCCCCC-CSSCCCCC
T ss_pred HHHHHHHHCCCEEEecCcCCCCC-CCCCCCCC
Confidence 346666777742 357886 36799883
No 295
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=29.19 E-value=1.4e+02 Score=21.44 Aligned_cols=31 Identities=13% Similarity=0.174 Sum_probs=25.3
Q ss_pred eEEEEEeCCCCEEEEEecCCchHHHHHHHCC
Q psy1437 117 VNITFIDKDGKRREIKGKVGDNVLYLAHRYE 147 (232)
Q Consensus 117 v~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~g 147 (232)
.-|+|...||..+.|.+.++.|..++++.--
T Consensus 10 ~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~ 40 (100)
T 1wgr_A 10 HVVKVYSEDGACRSVEVAAGATARHVCEMLV 40 (100)
T ss_dssp EEEEEEETTSCEEEEEECTTCCHHHHHHHHH
T ss_pred EEEEEEecCCCEEEEEECCCCcHHHHHHHHH
Confidence 4566667899989999999999999887543
No 296
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=28.80 E-value=66 Score=25.75 Aligned_cols=15 Identities=20% Similarity=0.180 Sum_probs=7.9
Q ss_pred hHHHHHHHHHHHHhh
Q psy1437 4 PEEVINAAQMAVKFD 18 (232)
Q Consensus 4 ~~~A~~~~~~Av~~D 18 (232)
.++|+.+.++|++.+
T Consensus 19 ~~~A~~~~~~~l~~~ 33 (359)
T 3ieg_A 19 LADALSQFHAAVDGD 33 (359)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhC
Confidence 345555555555544
No 297
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=28.20 E-value=69 Score=28.45 Aligned_cols=16 Identities=0% Similarity=-0.037 Sum_probs=9.5
Q ss_pred hcCHHHHHHHHHHHHH
Q psy1437 20 ENQDEIAAYYYQAAAR 35 (232)
Q Consensus 20 ~g~~~~A~~~Y~~ai~ 35 (232)
.|++++|+...+.|++
T Consensus 290 ~gd~d~A~~~l~rAl~ 305 (372)
T 3ly7_A 290 KGKTDESYQAINTGID 305 (372)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 4666666666665554
No 298
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=28.13 E-value=90 Score=21.22 Aligned_cols=37 Identities=11% Similarity=0.063 Sum_probs=27.4
Q ss_pred CCceeEEEEEeCCCCEEEEEecCCchHHHH----HHHCCCCc
Q psy1437 113 EDEIVNITFIDKDGKRREIKGKVGDNVLYL----AHRYEIPM 150 (232)
Q Consensus 113 ~~~mv~Vt~~~~~G~~~~v~~~~G~tLL~a----a~~~gi~l 150 (232)
.+.+++|++... |+.+.+++.+..|+.+. ....|++.
T Consensus 14 ~~~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~ 54 (96)
T 1wx8_A 14 SSRIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNA 54 (96)
T ss_dssp CSCEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCT
T ss_pred CCCcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCH
Confidence 356789998766 88889999999998763 34556653
No 299
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=27.89 E-value=87 Score=21.58 Aligned_cols=38 Identities=16% Similarity=0.225 Sum_probs=27.4
Q ss_pred CCCceeEEEEEeCCCCEEEEEecCCchHHHH----HHHCCCCc
Q psy1437 112 SEDEIVNITFIDKDGKRREIKGKVGDNVLYL----AHRYEIPM 150 (232)
Q Consensus 112 ~~~~mv~Vt~~~~~G~~~~v~~~~G~tLL~a----a~~~gi~l 150 (232)
..+.+++|++. ..|+.+.|++.+..|+.+. ....||+.
T Consensus 13 ~~~~~~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~ 54 (95)
T 1v86_A 13 VGKELVDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLPP 54 (95)
T ss_dssp CCCCCEEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSCS
T ss_pred CCCceEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCH
Confidence 34567888876 5688889999999998764 33456653
No 300
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=27.69 E-value=1.1e+02 Score=20.69 Aligned_cols=36 Identities=11% Similarity=0.161 Sum_probs=25.4
Q ss_pred CCceeEEEEEeCCCCEEEEEecCC-----chHHHH----HHHCCCC
Q psy1437 113 EDEIVNITFIDKDGKRREIKGKVG-----DNVLYL----AHRYEIP 149 (232)
Q Consensus 113 ~~~mv~Vt~~~~~G~~~~v~~~~G-----~tLL~a----a~~~gi~ 149 (232)
.+.+++|++.. .|..+.|++... .|+.+. ....|++
T Consensus 4 ~~~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip 48 (92)
T 1wxv_A 4 GSSGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVP 48 (92)
T ss_dssp CCSSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCC
T ss_pred CCCeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcC
Confidence 45679999875 577888999885 787653 3345665
No 301
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=27.52 E-value=2.2e+02 Score=23.12 Aligned_cols=27 Identities=11% Similarity=-0.057 Sum_probs=20.6
Q ss_pred HHHHhhhhcCHHHHHHHHHHHHHHHHH
Q psy1437 13 MAVKFDEENQDEIAAYYYQAAARFLLE 39 (232)
Q Consensus 13 ~Av~~D~~g~~~~A~~~Y~~ai~~l~~ 39 (232)
.|.-+-..|+|++|+.+|.+|+++.-.
T Consensus 93 la~~~~~~g~~~~A~~~~~~al~~~~~ 119 (406)
T 3sf4_A 93 LGNTLKVLGNFDEAIVCCQRHLDISRE 119 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 344445679999999999999987654
No 302
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=27.44 E-value=57 Score=26.55 Aligned_cols=24 Identities=17% Similarity=-0.075 Sum_probs=17.4
Q ss_pred HHHHhhhhcCHHHHHHHHHHHHHH
Q psy1437 13 MAVKFDEENQDEIAAYYYQAAARF 36 (232)
Q Consensus 13 ~Av~~D~~g~~~~A~~~Y~~ai~~ 36 (232)
.|.-+-..|+|++|+.+|++|+++
T Consensus 78 lg~~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 78 LGQCQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344455678888888888888864
No 303
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=26.97 E-value=50 Score=24.36 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=13.2
Q ss_pred HHHhhhhcCHHHHHHHHHHHH
Q psy1437 14 AVKFDEENQDEIAAYYYQAAA 34 (232)
Q Consensus 14 Av~~D~~g~~~~A~~~Y~~ai 34 (232)
|.-+-..|++++|+.+|.+++
T Consensus 115 a~~~~~~g~~~~A~~~~~~~l 135 (176)
T 2r5s_A 115 AVQYNQVGRDEEALELLWNIL 135 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHH
Confidence 333445677777777777655
No 304
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=26.79 E-value=1.8e+02 Score=24.24 Aligned_cols=45 Identities=11% Similarity=0.159 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 29 YYQAAARFLLETANSSSDENVAAWRQKAQQYLNRAEVLKDKIQVM 73 (232)
Q Consensus 29 ~Y~~ai~~l~~~~~e~~~~~~~~~~~k~~eY~~RaE~lk~~~~~~ 73 (232)
....-++.+-..+.+.+|..++.|++....|+.+.+.|.+.+...
T Consensus 111 ~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~ld~~~~~~ 155 (282)
T 3mfq_A 111 LYKSAVAVASEELQKLLPAKAEMIQKNTEKYQAQLDDLHAWVEKE 155 (282)
T ss_dssp HHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555566656799999999999999999999998887654
No 305
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=26.57 E-value=30 Score=25.66 Aligned_cols=24 Identities=8% Similarity=0.041 Sum_probs=14.3
Q ss_pred HHHHHHhhhhcCHHHHHHHHHHHH
Q psy1437 11 AQMAVKFDEENQDEIAAYYYQAAA 34 (232)
Q Consensus 11 ~~~Av~~D~~g~~~~A~~~Y~~ai 34 (232)
..+|..+-..|++++|+.+|++++
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al 33 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLS 33 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445555556666666666666554
No 306
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=26.44 E-value=72 Score=27.83 Aligned_cols=60 Identities=8% Similarity=0.019 Sum_probs=39.8
Q ss_pred HHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHhcc--CChHHHHHHHHHHHHHHH--HHHHHHH
Q psy1437 9 NAAQMAVKFDEENQDEIAAYYYQAAARFLLETANS--SSDENVAAWRQKAQQYLN--RAEVLKD 68 (232)
Q Consensus 9 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~e--~~~~~~~~~~~k~~eY~~--RaE~lk~ 68 (232)
+-++.|-++=.+|++++|+...++.+..+...+-+ .+......+...+.||+- |.|.-++
T Consensus 104 ~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr 167 (320)
T 3mkr_B 104 QRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERK 167 (320)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688888889999999999999976444332222 122233357777889987 5555443
No 307
>2rkk_A Vacuolar protein sorting-associated protein VTA1; MIT motif, cytoplasm, endosome, lipid transport, membrane, protein transport; 2.90A {Saccharomyces cerevisiae}
Probab=26.44 E-value=1.8e+02 Score=22.92 Aligned_cols=61 Identities=23% Similarity=0.286 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 6 EVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETANSSSDENVAAWRQKAQQYLNRAEVLKDKIQ 71 (232)
Q Consensus 6 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~e~~~~~~~~~~~k~~eY~~RaE~lk~~~~ 71 (232)
.-..++++|.++|+.|+--=|++|..-|++..+.. ..+++. .+.=..+-|+..|+.|+.+.
T Consensus 5 ~i~p~l~rA~Ele~~~~PvVaYyCrlYave~iL~~-~~~s~e----~~~~l~~LlD~LE~~K~~~~ 65 (168)
T 2rkk_A 5 NAARVVATAKDFDKVGLGIIGYYLQLYAVELILSE-EDRSQE----MTALATELLDTIEAFKKEIG 65 (168)
T ss_dssp HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHTTC-TTCCHH----HHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHhc-CCCChH----HHHHHHHHHHHHHHHHHhcc
Confidence 34578999999999998888888877877765542 223433 34455666777888887653
No 308
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=26.36 E-value=71 Score=24.59 Aligned_cols=25 Identities=24% Similarity=0.219 Sum_probs=17.8
Q ss_pred HHHHHHhhhhcCHHHHHHHHHHHHH
Q psy1437 11 AQMAVKFDEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 11 ~~~Av~~D~~g~~~~A~~~Y~~ai~ 35 (232)
...+.-+-+.|++++|+.+|++|++
T Consensus 22 ~~lg~~~~~~~~~~~A~~~~~~a~~ 46 (212)
T 3rjv_A 22 YYLADTWVSSGDYQKAEYWAQKAAA 46 (212)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 3445555567888888888888875
No 309
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=26.34 E-value=53 Score=21.56 Aligned_cols=35 Identities=14% Similarity=0.151 Sum_probs=25.6
Q ss_pred eeEEEEEeCCCCEEEEEecCCchHHHH----HHHCCCCc
Q psy1437 116 IVNITFIDKDGKRREIKGKVGDNVLYL----AHRYEIPM 150 (232)
Q Consensus 116 mv~Vt~~~~~G~~~~v~~~~G~tLL~a----a~~~gi~l 150 (232)
++.|++...+|+...+++.+..|+.+. ....|++.
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~ 41 (85)
T 3n3k_B 3 HMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPP 41 (85)
T ss_dssp -CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCG
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCH
Confidence 367887778898889999999998764 33456654
No 310
>2hsb_A Hypothetical UPF0332 protein AF0298; DUF103 family, structural genomics, joint center for structu genomics, JCSG; HET: MSE PG4; 1.95A {Archaeoglobus fulgidus}
Probab=26.17 E-value=1.3e+02 Score=21.35 Aligned_cols=39 Identities=15% Similarity=-0.201 Sum_probs=32.7
Q ss_pred chHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh
Q psy1437 3 LPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA 41 (232)
Q Consensus 3 ~~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~ 41 (232)
.+++|-+..+.|-..=+.|.|.-|++....|+..-++++
T Consensus 8 ~l~~A~~~L~~A~~~~~~g~y~~a~~~ay~a~~~alKAl 46 (126)
T 2hsb_A 8 RIRKAEKLVQDAKKEFEMGLYERCCSTAYYAMFHAAKAM 46 (126)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 467899999999888899999999888777787777765
No 311
>1orj_A Flagellar protein FLIS; flagellin, flagellar export, chaperone, flagellum, four HELI; 2.25A {Aquifex aeolicus} SCOP: a.24.19.1 PDB: 1ory_A
Probab=25.84 E-value=2.1e+02 Score=21.31 Aligned_cols=39 Identities=10% Similarity=0.119 Sum_probs=32.3
Q ss_pred chHHHHHHHHHHHHhhhhcCH-HHH---HHHHHHHHHHHHHHh
Q psy1437 3 LPEEVINAAQMAVKFDEENQD-EIA---AYYYQAAARFLLETA 41 (232)
Q Consensus 3 ~~~~A~~~~~~Av~~D~~g~~-~~A---~~~Y~~ai~~l~~~~ 41 (232)
+++-|+.++.+|...=.+|++ +++ -..-.+|++.+..+.
T Consensus 25 Lydgai~~l~~A~~ai~~~d~~~~k~~~~~~i~KA~~Ii~eL~ 67 (130)
T 1orj_A 25 LYDKAIECLERAIEIYDQVNELEKRKEFVENIDRVYDIISALK 67 (130)
T ss_dssp HHHHHHHHHHHHHHTGGGTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999 888 777888888775543
No 312
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=25.55 E-value=80 Score=24.38 Aligned_cols=17 Identities=41% Similarity=0.520 Sum_probs=8.6
Q ss_pred hhcCHHHHHHHHHHHHH
Q psy1437 19 EENQDEIAAYYYQAAAR 35 (232)
Q Consensus 19 ~~g~~~~A~~~Y~~ai~ 35 (232)
..|+|++|+.+|.++++
T Consensus 86 ~~~~~~~A~~~~~~a~~ 102 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVD 102 (272)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHh
Confidence 34455555555555543
No 313
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=25.49 E-value=2.4e+02 Score=23.84 Aligned_cols=18 Identities=22% Similarity=0.263 Sum_probs=12.3
Q ss_pred hcCHHHHHHHHHHHHHHH
Q psy1437 20 ENQDEIAAYYYQAAARFL 37 (232)
Q Consensus 20 ~g~~~~A~~~Y~~ai~~l 37 (232)
.|+|++|+.+|.++++.+
T Consensus 202 ~~~~~~A~~~~~~~~~~~ 219 (514)
T 2gw1_A 202 PESYDKADESFTKAARLF 219 (514)
T ss_dssp TTHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHh
Confidence 677777777777776643
No 314
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=25.35 E-value=1.8e+02 Score=20.55 Aligned_cols=47 Identities=15% Similarity=0.010 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHhc---cCChHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 24 EIAAYYYQAAARFLLETAN---SSSDENVAAWRQKAQQYLNRAEVLKDKI 70 (232)
Q Consensus 24 ~~A~~~Y~~ai~~l~~~~~---e~~~~~~~~~~~k~~eY~~RaE~lk~~~ 70 (232)
.++-....+|-++|-+.-. .-++..|..+..|+.+|..--..||.-+
T Consensus 52 ~~ie~~ldEA~eLl~qMelE~r~~p~s~R~~~~~klr~Yk~dL~~lk~el 101 (102)
T 2qyw_A 52 RDFDEKQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRKDLAKLHREV 101 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444455566665555322 3467788889999999988877777644
No 315
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=25.23 E-value=86 Score=21.27 Aligned_cols=29 Identities=21% Similarity=0.181 Sum_probs=21.1
Q ss_pred CceeEEEEEeCCCC--EEEEEecCCchHHHH
Q psy1437 114 DEIVNITFIDKDGK--RREIKGKVGDNVLYL 142 (232)
Q Consensus 114 ~~mv~Vt~~~~~G~--~~~v~~~~G~tLL~a 142 (232)
..+++|+|...+|. ..+|.+.+..|+.+.
T Consensus 5 ~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~l 35 (93)
T 1wgd_A 5 SSGVTLLVKSPNQRHRDLELSGDRGWSVGHL 35 (93)
T ss_dssp SCCCEEEEECSSSSCCCEEEECCTTSCHHHH
T ss_pred CcEEEEEEEeCCCCeEEEEEecCCCCcHHHH
Confidence 34578888878887 456677789998763
No 316
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=25.18 E-value=40 Score=29.32 Aligned_cols=29 Identities=21% Similarity=0.179 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhhhhcCHHHHHHHHHHHHH
Q psy1437 7 VINAAQMAVKFDEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 7 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 35 (232)
|-.+..+|..+-..|+|++|+.+|+++++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~ 53 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIE 53 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 44445555555555555555555555543
No 317
>2oh3_A Rubrerythrin, COG1633: uncharacterized conserved protein; ZP_00055496.1, COG1633: uncharacterized conSer protein; HET: MSE PGE; 2.00A {Magnetospirillum magnetotacticum} SCOP: a.25.1.8
Probab=24.90 E-value=2.2e+02 Score=21.35 Aligned_cols=58 Identities=14% Similarity=0.142 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 5 EEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETANSSSDENVAAWRQKAQQYLNRAEVLKDKI 70 (232)
Q Consensus 5 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~e~~~~~~~~~~~k~~eY~~RaE~lk~~~ 70 (232)
....+++..|+.... +|..+|...++.|-. .+++..++.++.-+.+=+..++.|++..
T Consensus 4 ~~~~e~L~~Ai~~E~-----~~~~~Y~~lA~~~~~---~~~~~~k~~f~~LA~eE~~H~~~l~~~~ 61 (167)
T 2oh3_A 4 YTLAEFLAHAIALET-----EAAERYVELADMMEA---HNNLDTATVFRDMARFSTLHGDEIKQRS 61 (167)
T ss_dssp CCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446777788887764 678899987774442 3488889999998888899999998886
No 318
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=24.67 E-value=96 Score=25.21 Aligned_cols=33 Identities=9% Similarity=0.064 Sum_probs=23.3
Q ss_pred chHHHHHHHHHHHHhh---------------hhcCHHHHHHHHHHHHH
Q psy1437 3 LPEEVINAAQMAVKFD---------------EENQDEIAAYYYQAAAR 35 (232)
Q Consensus 3 ~~~~A~~~~~~Av~~D---------------~~g~~~~A~~~Y~~ai~ 35 (232)
-.+.|+.+..+|++.+ ..|++++|..+|..|++
T Consensus 184 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 231 (308)
T 2ond_A 184 DKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 231 (308)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3456777777777655 34788888888887765
No 319
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=24.65 E-value=1.4e+02 Score=25.12 Aligned_cols=46 Identities=11% Similarity=0.201 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 29 YYQAAARFLLETANSSSDENVAAWRQKAQQYLNRAEVLKDKIQVMF 74 (232)
Q Consensus 29 ~Y~~ai~~l~~~~~e~~~~~~~~~~~k~~eY~~RaE~lk~~~~~~~ 74 (232)
++..-++.+-..+.+.+|..++.|++....|+.+.++|.+.+....
T Consensus 140 ~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~~~~~~l 185 (291)
T 1pq4_A 140 LVKRQATTIAKELAELDPDNRDQYEANLAAFLAELERLNQELGQIL 185 (291)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444544345889999999999999999999998886554
No 320
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=24.64 E-value=1.1e+02 Score=20.57 Aligned_cols=33 Identities=18% Similarity=0.307 Sum_probs=25.3
Q ss_pred eEEEEEeCCCCEEEEEecCCchHHHH----HHHCCCC
Q psy1437 117 VNITFIDKDGKRREIKGKVGDNVLYL----AHRYEIP 149 (232)
Q Consensus 117 v~Vt~~~~~G~~~~v~~~~G~tLL~a----a~~~gi~ 149 (232)
.+|++....|+..++++.+..|+.+. ....|++
T Consensus 11 ~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip 47 (84)
T 2kk8_A 11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIP 47 (84)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCC
T ss_pred eEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcC
Confidence 67887778899989999999998764 3345655
No 321
>2ca5_A MXIH; transport protein, type III secretion system, needle complex, protein transport, virulence; 2.10A {Shigella flexneri} SCOP: a.2.20.1 PDB: 2v6l_0 3j0r_A
Probab=24.60 E-value=1e+02 Score=21.59 Aligned_cols=39 Identities=18% Similarity=0.222 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHHHHHHHHh--ccCChHHHHHHHHHHHHHH
Q psy1437 22 QDEIAAYYYQAAARFLLETA--NSSSDENVAAWRQKAQQYL 60 (232)
Q Consensus 22 ~~~~A~~~Y~~ai~~l~~~~--~e~~~~~~~~~~~k~~eY~ 60 (232)
.++....-+.+++.--+..+ ...||.....|+.|++||-
T Consensus 18 ~f~~ga~~~~~~v~~Ai~~L~~~PsnPa~LAeyQ~kl~eys 58 (85)
T 2ca5_A 18 TFDDGTQTLQGELTLALDKLAKNPSNPQLLAEYQSKLSEYT 58 (85)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 34445555555555555555 2368888999999999994
No 322
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=24.43 E-value=1.6e+02 Score=24.48 Aligned_cols=44 Identities=7% Similarity=0.013 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 31 QAAARFLLETANSSSDENVAAWRQKAQQYLNRAEVLKDKIQVMF 74 (232)
Q Consensus 31 ~~ai~~l~~~~~e~~~~~~~~~~~k~~eY~~RaE~lk~~~~~~~ 74 (232)
..-++.+-..+.+.+|..++.|++....|+.+-++|.+.+....
T Consensus 126 ~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~~~~~~l 169 (284)
T 2prs_A 126 RATAVAIHGKLVELMPQSRAKLDANLKDFEAQLASTETQVGNEL 169 (284)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444345889999999999999999999998886554
No 323
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=24.43 E-value=95 Score=25.95 Aligned_cols=24 Identities=13% Similarity=0.130 Sum_probs=16.5
Q ss_pred HHhhhhcCHHHHHHHHHHHHHHHH
Q psy1437 15 VKFDEENQDEIAAYYYQAAARFLL 38 (232)
Q Consensus 15 v~~D~~g~~~~A~~~Y~~ai~~l~ 38 (232)
.-+-..|+|++|+.+|.+|++++.
T Consensus 149 ~~y~~~~~~~~A~~~~~~al~~~~ 172 (378)
T 3q15_A 149 EAYYHMKQTHVSMYHILQALDIYQ 172 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHH
Confidence 334456777888888888777654
No 324
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=23.94 E-value=57 Score=23.24 Aligned_cols=37 Identities=14% Similarity=-0.006 Sum_probs=25.5
Q ss_pred CceeEEEEE--eCCCC-EEEEEecCCchHHHHHHHCCCCc
Q psy1437 114 DEIVNITFI--DKDGK-RREIKGKVGDNVLYLAHRYEIPM 150 (232)
Q Consensus 114 ~~mv~Vt~~--~~~G~-~~~v~~~~G~tLL~aa~~~gi~l 150 (232)
-+|+.|.+. .++.. ...+++++|.|+.+++...|+.-
T Consensus 10 ~~~~~v~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~~ 49 (97)
T 2hj1_A 10 LNQINIEIAYAFPERYYLKSFQVDEGITVQTAITQSGILS 49 (97)
T ss_dssp -CEEEEEEEEEETTEEEEEEEEEETTCBHHHHHHHHTHHH
T ss_pred cceEEEEEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCCc
Confidence 456665554 34432 24678899999999999999853
No 325
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=23.91 E-value=92 Score=19.64 Aligned_cols=32 Identities=28% Similarity=0.262 Sum_probs=23.2
Q ss_pred EEEEEeCCCCEEEEEecCCchHHHH----HHHCCCC
Q psy1437 118 NITFIDKDGKRREIKGKVGDNVLYL----AHRYEIP 149 (232)
Q Consensus 118 ~Vt~~~~~G~~~~v~~~~G~tLL~a----a~~~gi~ 149 (232)
+|++...+|+...+++.+..|+.+. ....|++
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~ 37 (76)
T 1ndd_A 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIP 37 (76)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCC
T ss_pred EEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcC
Confidence 4666667898888999999998763 3345665
No 326
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=23.85 E-value=90 Score=26.25 Aligned_cols=26 Identities=19% Similarity=0.097 Sum_probs=12.3
Q ss_pred HHHHHHHHhhhhcCHHHHHHHHHHHH
Q psy1437 9 NAAQMAVKFDEENQDEIAAYYYQAAA 34 (232)
Q Consensus 9 ~~~~~Av~~D~~g~~~~A~~~Y~~ai 34 (232)
.+...|..+-..|+|++|+.+|.+++
T Consensus 28 ~~~~~~~~~~~~g~~~~A~~~~~~~l 53 (450)
T 2y4t_A 28 KHLELGKKLLAAGQLADALSQFHAAV 53 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33444444444555555555554444
No 327
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=23.72 E-value=81 Score=27.61 Aligned_cols=15 Identities=27% Similarity=0.430 Sum_probs=7.3
Q ss_pred hcCHHHHHHHHHHHH
Q psy1437 20 ENQDEIAAYYYQAAA 34 (232)
Q Consensus 20 ~g~~~~A~~~Y~~ai 34 (232)
.+++++|+.+|+.|+
T Consensus 380 ~~~~~~A~~~~~~A~ 394 (490)
T 2xm6_A 380 KKDEQQAAIWMRKAA 394 (490)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 444555555554444
No 328
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=23.65 E-value=86 Score=25.67 Aligned_cols=25 Identities=20% Similarity=-0.045 Sum_probs=19.2
Q ss_pred HHHHHHhhhhcCHHHHHHHHHHHHH
Q psy1437 11 AQMAVKFDEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 11 ~~~Av~~D~~g~~~~A~~~Y~~ai~ 35 (232)
..+|+-+...|+|++|+.+|++|++
T Consensus 204 ~~la~~~~~~g~~~eA~~~l~~al~ 228 (291)
T 3mkr_A 204 NGQAACHMAQGRWEAAEGVLQEALD 228 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455567788899999999888875
No 329
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=23.57 E-value=1.1e+02 Score=21.45 Aligned_cols=29 Identities=14% Similarity=0.138 Sum_probs=23.3
Q ss_pred CceeEEEEEeCCCCEEEEEecCCchHHHH
Q psy1437 114 DEIVNITFIDKDGKRREIKGKVGDNVLYL 142 (232)
Q Consensus 114 ~~mv~Vt~~~~~G~~~~v~~~~G~tLL~a 142 (232)
..++.|+|...+|+.+.+++....|+.+.
T Consensus 21 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~L 49 (106)
T 1ttn_A 21 GYECQLRLRLSTGKDLKLVVRSTDTVFHM 49 (106)
T ss_dssp CCSEEEEEEETTTEEEEEEECTTSHHHHH
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCcHHHH
Confidence 44578888777898888999999998764
No 330
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=23.36 E-value=63 Score=22.01 Aligned_cols=37 Identities=16% Similarity=0.047 Sum_probs=26.1
Q ss_pred CCceeEEEEEeCCCCEEEE-EecCCchHHHH----HHHCCCCc
Q psy1437 113 EDEIVNITFIDKDGKRREI-KGKVGDNVLYL----AHRYEIPM 150 (232)
Q Consensus 113 ~~~mv~Vt~~~~~G~~~~v-~~~~G~tLL~a----a~~~gi~l 150 (232)
.+.+++|++. ..|+.+.| ++.+..|+.+. ....||+.
T Consensus 4 ~~~~m~i~Vk-~~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~ 45 (90)
T 1v5t_A 4 GSSGLPIIVK-WGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLP 45 (90)
T ss_dssp CCCSCCEEEE-ETTEEEEECSCCSSSBHHHHHHHHHHHTCCCT
T ss_pred CCceEEEEEE-ECCEEEEEEEeCCCCCHHHHHHHHHHHHCcCH
Confidence 3456778876 47888888 89999998764 34567753
No 331
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=22.97 E-value=1e+02 Score=19.39 Aligned_cols=32 Identities=19% Similarity=0.240 Sum_probs=22.8
Q ss_pred EEEEEeCCCCEEEEEecCCchHHHH----HHHCCCC
Q psy1437 118 NITFIDKDGKRREIKGKVGDNVLYL----AHRYEIP 149 (232)
Q Consensus 118 ~Vt~~~~~G~~~~v~~~~G~tLL~a----a~~~gi~ 149 (232)
+|++...+|+...+++.+..|+.+. ....|++
T Consensus 2 ~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~ 37 (76)
T 3a9j_A 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP 37 (76)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCC
T ss_pred EEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcC
Confidence 4666667898888999999998763 3344554
No 332
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=22.96 E-value=48 Score=17.97 Aligned_cols=12 Identities=42% Similarity=0.587 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHH
Q psy1437 54 QKAQQYLNRAEV 65 (232)
Q Consensus 54 ~k~~eY~~RaE~ 65 (232)
-.+.+|++|.|.
T Consensus 9 LeAAeyLErrEr 20 (26)
T 1pd7_B 9 LEAADYLERRER 20 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 346789998876
No 333
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=22.91 E-value=1.7e+02 Score=24.87 Aligned_cols=45 Identities=9% Similarity=0.177 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 31 QAAARFLLETANSSSDENVAAWRQKAQQYLNRAEVLKDKIQVMFL 75 (232)
Q Consensus 31 ~~ai~~l~~~~~e~~~~~~~~~~~k~~eY~~RaE~lk~~~~~~~~ 75 (232)
...++.+-..+.+.+|..++.|++....|+.+.++|.+.+.....
T Consensus 142 ~~~a~~I~~~L~~~DP~~a~~Y~~N~~~~~~~L~~Ld~~~~~~l~ 186 (312)
T 2o1e_A 142 QKEVKNITAQIVKQDPDNKEYYEKNSKEYIAKLQDLDKLYRTTAK 186 (312)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444443458899999999999999999999988866543
No 334
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=22.71 E-value=1.1e+02 Score=21.48 Aligned_cols=20 Identities=15% Similarity=0.081 Sum_probs=12.8
Q ss_pred HhhhhcCHHHHHHHHHHHHH
Q psy1437 16 KFDEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 16 ~~D~~g~~~~A~~~Y~~ai~ 35 (232)
-+-..|++++|+.+|.++++
T Consensus 119 ~~~~~~~~~~A~~~~~~~~~ 138 (186)
T 3as5_A 119 ALDNLGRFDEAIDSFKIALG 138 (186)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHHh
Confidence 34456677777777777664
No 335
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=22.51 E-value=1.8e+02 Score=26.65 Aligned_cols=64 Identities=14% Similarity=0.090 Sum_probs=42.4
Q ss_pred chHHHHHHHHH-------------HHHhhhhcCHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 3 LPEEVINAAQM-------------AVKFDEENQDEIAAYYYQAAARFLLETANSSSDENVAAWRQKAQQYLNRAEVLKDK 69 (232)
Q Consensus 3 ~~~~A~~~~~~-------------Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~e~~~~~~~~~~~k~~eY~~RaE~lk~~ 69 (232)
++++||..+++ |=-+=..++|.+|+.+|-+|.+.+-..-|..++. +..+|.++=|++|.-.
T Consensus 286 Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~YnY~reDe------EiYke~~eIanelip~ 359 (489)
T 4gq4_A 286 LYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDE------EIYKEFFEVANDVIPN 359 (489)
T ss_dssp HHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCTTCH------HHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhhhhhhcccccchH------HHHHHHHHHHHHhhhH
Confidence 35566665554 4455667899999999999998776543432222 2336778888888776
Q ss_pred HHH
Q psy1437 70 IQV 72 (232)
Q Consensus 70 ~~~ 72 (232)
+-+
T Consensus 360 ~lk 362 (489)
T 4gq4_A 360 LLK 362 (489)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 336
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=22.46 E-value=1.3e+02 Score=17.74 Aligned_cols=22 Identities=9% Similarity=0.363 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1437 49 VAAWRQKAQQYLNRAEVLKDKI 70 (232)
Q Consensus 49 ~~~~~~k~~eY~~RaE~lk~~~ 70 (232)
...+.+++..|++|+-.|...-
T Consensus 8 mq~LNdrlAsyidkVR~LE~~N 29 (39)
T 1gk7_A 8 LQELNDRFANYIDKVRFLEQQN 29 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4568899999999998887643
No 337
>2rkl_A Vacuolar protein sorting-associated protein VTA1; dimerization motif, cytoplasm, endosome, lipid transport, membrane, protein transport; 1.50A {Saccharomyces cerevisiae} PDB: 3mhv_A
Probab=22.04 E-value=1.6e+02 Score=18.68 Aligned_cols=35 Identities=17% Similarity=0.016 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHH
Q psy1437 4 PEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLL 38 (232)
Q Consensus 4 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~ 38 (232)
+.+|..+++-||..=+=....-|+..-+.|+++|.
T Consensus 17 i~~AqK~aK~AiSAL~feDv~tA~~~L~~AL~lL~ 51 (53)
T 2rkl_A 17 IEQIQKLAKYAISALNYEDLPTAKDELTKALDLLN 51 (53)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHh
Confidence 45677777777776666677777777777777664
No 338
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=21.84 E-value=1.8e+02 Score=24.66 Aligned_cols=42 Identities=12% Similarity=0.148 Sum_probs=31.9
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 33 AARFLLETANSSSDENVAAWRQKAQQYLNRAEVLKDKIQVMF 74 (232)
Q Consensus 33 ai~~l~~~~~e~~~~~~~~~~~k~~eY~~RaE~lk~~~~~~~ 74 (232)
.++.+-..+.+.+|..++.|++....|+.+.++|.+.+....
T Consensus 149 ~a~~I~~~L~~~DP~~a~~Y~~N~~~~~~~L~~Ld~~~~~~l 190 (313)
T 1toa_A 149 SVKAVYESLCKLLPGKTREFTQRYQAYQQQLDKLDAYVRRKA 190 (313)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444345889999999999999999999998886554
No 339
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=21.81 E-value=88 Score=27.37 Aligned_cols=15 Identities=40% Similarity=0.702 Sum_probs=6.8
Q ss_pred hcCHHHHHHHHHHHH
Q psy1437 20 ENQDEIAAYYYQAAA 34 (232)
Q Consensus 20 ~g~~~~A~~~Y~~ai 34 (232)
.+++++|+.+|++|+
T Consensus 200 ~~~~~~A~~~~~~a~ 214 (490)
T 2xm6_A 200 ERNDAISAQWYRKSA 214 (490)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHH
Confidence 344444444444443
No 340
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=21.66 E-value=33 Score=24.04 Aligned_cols=25 Identities=20% Similarity=0.390 Sum_probs=16.7
Q ss_pred hHHHHHHHCCCC--c---cCCCCCCcccccC
Q psy1437 138 NVLYLAHRYEIP--M---EGACEASLACTTC 163 (232)
Q Consensus 138 tLL~aa~~~gi~--l---~~~CgG~G~CgtC 163 (232)
..|+.+.+.|.- + +..|. .|.|++|
T Consensus 35 rDL~~Le~~G~l~R~~~~~~~C~-sgsC~sC 64 (87)
T 2k02_A 35 AMLERMEAMGKVVRISETSEGCL-SGSCKSC 64 (87)
T ss_dssp HHHHHHHTTCCSEEEEEECCSSC-SSSSSSC
T ss_pred HHHHHHHHCCCEEEEecCCCCCC-CCCCCCC
Confidence 446777777752 2 47896 3678888
No 341
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=21.52 E-value=1.1e+02 Score=24.85 Aligned_cols=27 Identities=22% Similarity=0.043 Sum_probs=20.2
Q ss_pred HHHHHHHHhhhhcCHHHHHHHHHHHHH
Q psy1437 9 NAAQMAVKFDEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 9 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 35 (232)
.+...|..+-..|++++|+..|+++++
T Consensus 119 ~~~~~a~~~~~~g~~~~A~~~~~~al~ 145 (287)
T 3qou_A 119 LXAQQAMQLMQESNYTDALPLLXDAWQ 145 (287)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 345667777778888888888888764
No 342
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=21.50 E-value=1.3e+02 Score=21.22 Aligned_cols=36 Identities=17% Similarity=0.159 Sum_probs=26.8
Q ss_pred CceeEEEEEeCCCCEEEEEecCCchHHHH----HHHCCCC
Q psy1437 114 DEIVNITFIDKDGKRREIKGKVGDNVLYL----AHRYEIP 149 (232)
Q Consensus 114 ~~mv~Vt~~~~~G~~~~v~~~~G~tLL~a----a~~~gi~ 149 (232)
..++.|++...+|+.+.+++.+..|+.+. ....|++
T Consensus 33 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip 72 (111)
T 2ojr_A 33 LLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP 72 (111)
T ss_dssp SSCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCC
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcC
Confidence 34688888878898888999999998763 3344554
No 343
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=21.48 E-value=1.7e+02 Score=24.43 Aligned_cols=46 Identities=13% Similarity=0.183 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 29 YYQAAARFLLETANSSSDENVAAWRQKAQQYLNRAEVLKDKIQVMF 74 (232)
Q Consensus 29 ~Y~~ai~~l~~~~~e~~~~~~~~~~~k~~eY~~RaE~lk~~~~~~~ 74 (232)
.+..-++.+-..+.+.+|..++.|++....|+.+-++|.+.+....
T Consensus 129 ~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~~~~~~l 174 (286)
T 3gi1_A 129 LAGEEAVNIAKELGRLDPKHKDSYTKNAKAFKKEAEQLTEEYTQKF 174 (286)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444544345888999999999999999999988886554
No 344
>1oah_A Cytochrome C nitrite reductase; nitrogen cycle, respiratory nitrite ammonification; HET: HEM; 2.3A {Desulfovibrio desulfuricans} SCOP: a.138.1.3
Probab=21.47 E-value=3.4e+02 Score=25.02 Aligned_cols=68 Identities=9% Similarity=0.000 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHHHhhhh------cCHHHHHHHHHHHHHHHHHHhcc-----CChHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 4 PEEVINAAQMAVKFDEE------NQDEIAAYYYQAAARFLLETANS-----SSDENVAAWRQKAQQYLNRAEVLKDKIQ 71 (232)
Q Consensus 4 ~~~A~~~~~~Av~~D~~------g~~~~A~~~Y~~ai~~l~~~~~e-----~~~~~~~~~~~k~~eY~~RaE~lk~~~~ 71 (232)
+.+|+..++.|.++..+ ..+.+|+.+|++|--++.-+..+ -+|..-..+.....+|...|+.+-..+.
T Consensus 383 l~~~~~~~~~A~~~~~~~~g~~~~~~~~a~~~~r~Aq~~wdfv~Aens~GfHNP~ea~r~L~~s~~~a~~a~~~l~~~~ 461 (519)
T 1oah_A 383 SVKAHEAVRLANAYEGHRAANYEALMAEAREMVRKGQLFWDYVSAENSVGFHNPAKALDTLMTSMECSQKAVDLATEAT 461 (519)
T ss_dssp HHHHHHHHHHHHHCCSCCCTTHHHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHhheeccCceeccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778888774332 34578888999976555444433 3677777789999999998877655543
No 345
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=21.40 E-value=1.7e+02 Score=24.33 Aligned_cols=41 Identities=22% Similarity=0.445 Sum_probs=31.2
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437 34 ARFLLETANSSSDENVAAWRQKAQQYLNRAEVLKDKIQVMF 74 (232)
Q Consensus 34 i~~l~~~~~e~~~~~~~~~~~k~~eY~~RaE~lk~~~~~~~ 74 (232)
++.+-..+.+.+|..++.|++....|+.+.++|.+.+....
T Consensus 132 a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~~~~~~l 172 (284)
T 3cx3_A 132 AQIIADKLSEVDSEHKETYQKNAQAFIKKAQELTKKFQPKF 172 (284)
T ss_dssp HHHHHHHHHHHSGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444345888999999999999999999988886554
No 346
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=21.28 E-value=61 Score=26.13 Aligned_cols=28 Identities=18% Similarity=0.112 Sum_probs=21.3
Q ss_pred eeEEEEEeCCCCEEEEEecCCchHHHHHHHCC
Q psy1437 116 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYE 147 (232)
Q Consensus 116 mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~g 147 (232)
|++|++ |+|.. ++++.|.|+++.|..-+
T Consensus 1 ~i~I~~--p~G~~--~~~~~g~T~~dia~~i~ 28 (224)
T 1tke_A 1 MPVITL--PDGSQ--RHYDHAVSPMDVALDIG 28 (224)
T ss_dssp CCEEEC--TTSCE--EECSSCBCHHHHHHHHC
T ss_pred CeEEEe--CCCCE--EEecCCCCHHHHHHHHh
Confidence 355663 78976 77789999999987653
No 347
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=21.26 E-value=1.9e+02 Score=19.16 Aligned_cols=35 Identities=9% Similarity=0.028 Sum_probs=25.4
Q ss_pred ceeEEEEEeCCCC-EEEEEecCCchHH---HH-HHHCCCC
Q psy1437 115 EIVNITFIDKDGK-RREIKGKVGDNVL---YL-AHRYEIP 149 (232)
Q Consensus 115 ~mv~Vt~~~~~G~-~~~v~~~~G~tLL---~a-a~~~gi~ 149 (232)
..++|++.+.+|. ...|.+...++|- ++ +.+.|++
T Consensus 6 ~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~ 45 (79)
T 3a4r_A 6 QELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLS 45 (79)
T ss_dssp CCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCT
T ss_pred CEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCC
Confidence 3489999888995 7889999998753 33 3456665
No 348
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=21.08 E-value=1.1e+02 Score=21.68 Aligned_cols=36 Identities=17% Similarity=0.173 Sum_probs=27.4
Q ss_pred ceeEEEEEeCCCCEEEEEecCCchHHHH----HHHCCCCc
Q psy1437 115 EIVNITFIDKDGKRREIKGKVGDNVLYL----AHRYEIPM 150 (232)
Q Consensus 115 ~mv~Vt~~~~~G~~~~v~~~~G~tLL~a----a~~~gi~l 150 (232)
.++.|++...+|+...|.+.+..|+.+. ....|++.
T Consensus 34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~ 73 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 73 (111)
T ss_dssp GCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCG
T ss_pred ccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCh
Confidence 4578888888999989999999999763 33456654
No 349
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=21.05 E-value=1.7e+02 Score=21.25 Aligned_cols=35 Identities=14% Similarity=0.264 Sum_probs=25.8
Q ss_pred CceeEEEEEeCCCCEEEEEecCCchHHHH----HHHCCCC
Q psy1437 114 DEIVNITFIDKDGKRREIKGKVGDNVLYL----AHRYEIP 149 (232)
Q Consensus 114 ~~mv~Vt~~~~~G~~~~v~~~~G~tLL~a----a~~~gi~ 149 (232)
+.+++|+|... |+...+++....|+.+. ....||+
T Consensus 30 ~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip 68 (125)
T 1j8c_A 30 PKIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQ 68 (125)
T ss_dssp CCCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSC
T ss_pred CCcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcC
Confidence 46688988766 88888999999998764 2344554
No 350
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=20.89 E-value=1.8e+02 Score=20.06 Aligned_cols=37 Identities=8% Similarity=-0.068 Sum_probs=24.8
Q ss_pred CceeEEEEEeCCC----CEEEEEecCCchHHHH----HHHCCCCc
Q psy1437 114 DEIVNITFIDKDG----KRREIKGKVGDNVLYL----AHRYEIPM 150 (232)
Q Consensus 114 ~~mv~Vt~~~~~G----~~~~v~~~~G~tLL~a----a~~~gi~l 150 (232)
..+++|+|....| +.+.+++.+..|+.+. ....||+.
T Consensus 5 ~~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~ 49 (102)
T 1v5o_A 5 SSGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPA 49 (102)
T ss_dssp SCCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCG
T ss_pred CCeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcCh
Confidence 3456777765544 6778999999998763 33556664
No 351
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=20.88 E-value=1.2e+02 Score=21.33 Aligned_cols=30 Identities=17% Similarity=0.270 Sum_probs=21.6
Q ss_pred CCceeEEEEEeCCCCEEEE--EecCCchHHHH
Q psy1437 113 EDEIVNITFIDKDGKRREI--KGKVGDNVLYL 142 (232)
Q Consensus 113 ~~~mv~Vt~~~~~G~~~~v--~~~~G~tLL~a 142 (232)
....++|+|...+|+..++ ++.+..|+.+.
T Consensus 16 ~~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~l 47 (98)
T 4a20_A 16 DNAAVHLTLKKIQAPKFSIEHDFSPSDTILQI 47 (98)
T ss_dssp --CCEEEEEEECSSSCEEEEEEECTTCBHHHH
T ss_pred CCCCEEEEEEcCCCCEEEEEEecCCCChHHHH
Confidence 3455889998889986555 56699999874
No 352
>3a1g_B Polymerase basic protein 2; influenza virus, RNA polymerase, nucleotide-binding, nucleotidyltransferase, nucleus, RNA replication; 1.70A {Influenza a virus} PDB: 2ztt_B
Probab=20.84 E-value=33 Score=20.46 Aligned_cols=17 Identities=12% Similarity=0.141 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy1437 59 YLNRAEVLKDKIQVMFL 75 (232)
Q Consensus 59 Y~~RaE~lk~~~~~~~~ 75 (232)
-|+||++||+.+...+.
T Consensus 3 ~~~~ikelk~L~~d~~a 19 (40)
T 3a1g_B 3 SMERIKELRNLMSQSRT 19 (40)
T ss_dssp HHHHHHHHHHHTTSHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 37899999998865543
No 353
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=20.82 E-value=2.4e+02 Score=20.21 Aligned_cols=35 Identities=14% Similarity=0.051 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHhhhhcCH--HHHHHHHHHHHHHHH
Q psy1437 4 PEEVINAAQMAVKFDEENQD--EIAAYYYQAAARFLL 38 (232)
Q Consensus 4 ~~~A~~~~~~Av~~D~~g~~--~~A~~~Y~~ai~~l~ 38 (232)
++.|+.-+..-|+.=..|+. ++++.+|.+|++++-
T Consensus 32 FEeal~eLEeIV~~LE~gel~LEesl~lyeeG~~L~k 68 (100)
T 1vp7_A 32 FETALAELESLVSAMENGTLPLEQSLSAYRRGVELAR 68 (100)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 45566666666666666644 788888888886443
No 354
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.46 E-value=86 Score=26.36 Aligned_cols=27 Identities=19% Similarity=0.111 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhcCHHHHHHHHHHHHH
Q psy1437 9 NAAQMAVKFDEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 9 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 35 (232)
..+.+|-++=+.|+|++|+..|.++++
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~ 32 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLD 32 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh
No 355
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=20.35 E-value=2.3e+02 Score=19.80 Aligned_cols=48 Identities=13% Similarity=0.174 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHhc---cC--ChHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q psy1437 26 AAYYYQAAARFLLETAN---SS--SDENVAAWRQKAQQYLNRAEV-LKDKIQVM 73 (232)
Q Consensus 26 A~~~Y~~ai~~l~~~~~---e~--~~~~~~~~~~k~~eY~~RaE~-lk~~~~~~ 73 (232)
+=..-.+|-++|-+.-. .- +++.|..|..|+.+|-.-... ||.-++.-
T Consensus 39 ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~lk~l 92 (97)
T 3onj_A 39 VEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQSDIKRPLQSL 92 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344555555554422 23 677899999999999999998 88877543
No 356
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=20.33 E-value=1.2e+02 Score=20.31 Aligned_cols=33 Identities=27% Similarity=0.230 Sum_probs=24.1
Q ss_pred EEEEEeCCCCEEEEEecCCchHHHH----HHHCCCCc
Q psy1437 118 NITFIDKDGKRREIKGKVGDNVLYL----AHRYEIPM 150 (232)
Q Consensus 118 ~Vt~~~~~G~~~~v~~~~G~tLL~a----a~~~gi~l 150 (232)
.|+|...+|+...+++.+..|+.+. ....|++.
T Consensus 2 ~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~ 38 (88)
T 4fbj_B 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPP 38 (88)
T ss_dssp EEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCG
T ss_pred EEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCh
Confidence 4666667899889999999998763 33456654
No 357
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=20.32 E-value=1.3e+02 Score=21.55 Aligned_cols=31 Identities=19% Similarity=0.210 Sum_probs=22.7
Q ss_pred EEEEeCCCCEEEEEecCCchHHHH----HHHCCCC
Q psy1437 119 ITFIDKDGKRREIKGKVGDNVLYL----AHRYEIP 149 (232)
Q Consensus 119 Vt~~~~~G~~~~v~~~~G~tLL~a----a~~~gi~ 149 (232)
|.+...+|+...+++.+..|+.+. ....|++
T Consensus 12 i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip 46 (114)
T 2kdi_A 12 IFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP 46 (114)
T ss_dssp EEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCC
T ss_pred EEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcC
Confidence 666567899889999999998763 3345665
No 358
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=20.30 E-value=1.3e+02 Score=19.05 Aligned_cols=32 Identities=22% Similarity=0.297 Sum_probs=23.2
Q ss_pred eEEEEEeCCCCEEEEEecCCchHHHH----HHHCCCC
Q psy1437 117 VNITFIDKDGKRREIKGKVGDNVLYL----AHRYEIP 149 (232)
Q Consensus 117 v~Vt~~~~~G~~~~v~~~~G~tLL~a----a~~~gi~ 149 (232)
++|++.. +|+.+.+++.+..|+.+. ....|++
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~ 40 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIP 40 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCC
Confidence 5677766 788888999999998763 2345665
No 359
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=20.14 E-value=96 Score=24.45 Aligned_cols=26 Identities=12% Similarity=0.070 Sum_probs=15.5
Q ss_pred HHHHHHHhhhhcCHHHHHHHHHHHHH
Q psy1437 10 AAQMAVKFDEENQDEIAAYYYQAAAR 35 (232)
Q Consensus 10 ~~~~Av~~D~~g~~~~A~~~Y~~ai~ 35 (232)
+..+|..+-..|+|++|+.+|.++++
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~ 49 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQ 49 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34555555666666666666666553
Done!