RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1437
(232 letters)
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur,
metal-binding, electron transport; 2.01A
{Rhodopseudomonas palustris}
Length = 126
Score = 176 bits (449), Expect = 3e-57
Identities = 41/122 (33%), Positives = 62/122 (50%), Gaps = 2/122 (1%)
Query: 100 TRHGEYEWQDPKSEDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIP-MEGACEASL 158
H P+ I F+D G+ R ++ + G V+ A R IP +E C +
Sbjct: 6 HHHHHSSGLVPRGSHMA-KINFVDHTGETRTVEVEEGATVMEAAIRNAIPGVEAECGGAC 64
Query: 159 ACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLPKA 218
AC TCHVYV + + + E+D+LD ++ NSRL CQI ++ EL+G+ VT P+
Sbjct: 65 ACATCHVYVDEAWREKVGGPSPMEEDMLDFGYDVRPNSRLSCQIKVSNELDGLIVTTPER 124
Query: 219 TR 220
R
Sbjct: 125 QR 126
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport,
iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Length = 109
Score = 175 bits (445), Expect = 8e-57
Identities = 68/108 (62%), Positives = 89/108 (82%)
Query: 113 EDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYL 172
++VN+ F+D+ G+R + G+VGDNVL+LA R+ + +EGACEASLAC+TCHVYV ++L
Sbjct: 2 ASDVVNVVFVDRSGQRIPVSGRVGDNVLHLAQRHGVDLEGACEASLACSTCHVYVSEDHL 61
Query: 173 DALPPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLPKATR 220
D LPP EE+EDD+LD+AP L++NSRLGCQI+LT ELEG E TLPK TR
Sbjct: 62 DLLPPPEEREDDMLDMAPLLQENSRLGCQIVLTPELEGAEFTLPKITR 109
>3n9z_C Adrenodoxin; cytochrome P450, 22-hydroxycholesterol, cholesterol
SIDE CHA cleavage, structural genomics; HET: HEM HC9;
2.17A {Homo sapiens} PDB: 3na1_C* 3p1m_A* 1l6u_A 1l6v_A
1e6e_B* 1cje_A
Length = 123
Score = 172 bits (437), Expect = 2e-55
Identities = 44/121 (36%), Positives = 72/121 (59%), Gaps = 2/121 (1%)
Query: 112 SEDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEG--ACEASLACTTCHVYVKH 169
S ++ + + FI++DG+ KGKVGD++L + + ++G ACE +LAC+TCH+ +
Sbjct: 1 SSEDKITVHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFED 60
Query: 170 EYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLPKATRNFYVDGHTP 229
+ L ++E+D+LDLA L D SRLGCQI LTK ++ + V +P+ +
Sbjct: 61 HIYEKLDAITDEENDMLDLAYGLTDRSRLGCQICLTKSMDNMTVRVPETVADARQSIDVG 120
Query: 230 K 230
K
Sbjct: 121 K 121
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur,
iron, transport, ferredoxin, adrenodoxin-like, electron
transport; 2.60A {Schizosaccharomyces pombe}
Length = 103
Score = 166 bits (423), Expect = 2e-53
Identities = 49/102 (48%), Positives = 71/102 (69%)
Query: 115 EIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDA 174
+ + F+ +G+ I+G GD++L LAH I +EGACE S+AC+TCHV V E+ +
Sbjct: 2 TGIKVFFVTPEGREIMIEGNEGDSILDLAHANNIDLEGACEGSVACSTCHVIVDPEHYEL 61
Query: 175 LPPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLP 216
L P EE E+D+LDLA L++ SRLGCQ++L K+L+GI V +P
Sbjct: 62 LDPPEEDEEDMLDLAFGLEETSRLGCQVLLRKDLDGIRVRIP 103
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular
electron TRA electron transport, metal-binding; HET:
RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A
3n9y_C* 2jqr_B* 3na0_C*
Length = 108
Score = 165 bits (420), Expect = 5e-53
Identities = 42/107 (39%), Positives = 69/107 (64%), Gaps = 2/107 (1%)
Query: 112 SEDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEG--ACEASLACTTCHVYVKH 169
S + + + FI++DG+ KGK+GD++L + + + ++G ACE +LAC+TCH+ +
Sbjct: 2 SSGDKITVHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQ 61
Query: 170 EYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLP 216
+ L ++E+D+LDLA L D SRLGCQI LTK ++ + V +P
Sbjct: 62 HIFEKLEAITDEENDMLDLAYGLTDRSRLGCQICLTKAMDNMTVRVP 108
>3ah7_A [2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur cluster
biosynthes pseudomonas, metal binding protein; 1.90A
{Pseudomonas putida}
Length = 113
Score = 162 bits (411), Expect = 1e-51
Identities = 43/117 (36%), Positives = 64/117 (54%), Gaps = 10/117 (8%)
Query: 119 ITFIDKDG---KRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDAL 175
+TF+ + + ++ K G N+L LAH + I ME AC ACTTCH V + D+L
Sbjct: 4 VTFLPHEKFCPEGLTVEVKPGTNILELAHDHHIEMESACGGVKACTTCHCIV-RKGFDSL 62
Query: 176 PPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLPKATRNFYVDGHTPKPH 232
A+E E+D+LD A L+ SRLGCQ+ + E + + +PK + N + PH
Sbjct: 63 EEADELEEDMLDKAWGLEAQSRLGCQVFVAD--EDLTIEIPKYSLNHAAEA----PH 113
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A
{Novosphingobium aromaticivorans}
Length = 104
Score = 156 bits (398), Expect = 1e-49
Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 119 ITFIDKDGKRREIKGKVGDNVLYLAHRYEIP-MEGACEASLACTTCHVYVKHEYLDALPP 177
I +DG R EI+ + G +++ I + C +C TCHV V + D LP
Sbjct: 3 ILVTTRDGTRTEIQAEPGLSLMEALRDAGIDELLALCGGCCSCATCHVLVAPAFADRLPA 62
Query: 178 AEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLP 216
E+DLLD + +SRL CQI + +LEG+EV +
Sbjct: 63 LSGDENDLLDSSDHRTPHSRLSCQITINDKLEGLEVEIA 101
>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR
{Pseudomonas SP} SCOP: d.15.4.1
Length = 105
Score = 156 bits (397), Expect = 2e-49
Identities = 23/100 (23%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 119 ITFIDKDGKRREIKGKVGDNVLYLAHRYEIP-MEGACEASLACTTCHVYVKHEYLDALPP 177
+ FID+ + + G +++ +A + +P + C S C TC + ++ +++ +
Sbjct: 3 VVFIDEQSGEYAVDAQDGQSLMEVATQNGVPGIVAECGGSCVCATCRIEIEDAWVEIVGE 62
Query: 178 AEEKEDDLLDLAPF-LKDNSRLGCQIILTKELEGIEVTLP 216
A E+DLL + +RL CQ+ + ++G+ V +P
Sbjct: 63 ANPDENDLLQSTGEPMTAGTRLSCQVFIDPSMDGLIVRVP 102
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A
{Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A
1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C*
1put_A 1gpx_A
Length = 106
Score = 155 bits (395), Expect = 4e-49
Identities = 41/100 (41%), Positives = 59/100 (59%), Gaps = 2/100 (2%)
Query: 119 ITFIDKDGKRREIKGKVGDNVLYLAHRYEIP-MEGACEASLACTTCHVYVKHEYLDALPP 177
+ ++ DG RRE+ G +++ A I + G C S +C TCHVYV + D +P
Sbjct: 3 VVYVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVPA 62
Query: 178 AEEKEDDLLD-LAPFLKDNSRLGCQIILTKELEGIEVTLP 216
A E+E +L+ + LK NSRL CQII+T EL+GI V +P
Sbjct: 63 ANEREIGMLESVTAELKPNSRLCCQIIMTPELDGIVVDVP 102
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding,
iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus}
SCOP: d.15.4.1 PDB: 1e9m_A
Length = 106
Score = 153 bits (390), Expect = 2e-48
Identities = 39/101 (38%), Positives = 56/101 (55%), Gaps = 2/101 (1%)
Query: 119 ITFIDKDGKRREIKGKVGDNVLYLAHRYEIPM-EGACEASLACTTCHVYVKHEYLDALPP 177
I FI+ +G R E++ K G V+ A +P + C + AC+TCH YV ++D LP
Sbjct: 3 IIFIEHNGTRHEVEAKPGLTVMEAARDNGVPGIDADCGGACACSTCHAYVDPAWVDKLPK 62
Query: 178 AEEKEDDLLDLAPFLKD-NSRLGCQIILTKELEGIEVTLPK 217
A E D++D A SRL CQI +T L+G+ V LP+
Sbjct: 63 ALPTETDMIDFAYEPNPATSRLTCQIKVTSLLDGLVVHLPE 103
>1i7h_A Ferredoxin; 2Fe-2S,electron transport; 1.70A {Escherichia coli}
SCOP: d.15.4.1
Length = 111
Score = 152 bits (387), Expect = 6e-48
Identities = 41/107 (38%), Positives = 56/107 (52%), Gaps = 6/107 (5%)
Query: 119 ITFIDKDG---KRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDAL 175
I + ++ G+ +L A R I +E ACE S ACTTCH V E D+L
Sbjct: 4 IVILPHQDLCPDGAVLEANSGETILDAALRNGIEIEHACEKSCACTTCHCIV-REGFDSL 62
Query: 176 PPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLPKATRNF 222
P + E+EDD+LD A L+ SRL CQ +T E + V +P+ T N
Sbjct: 63 PESSEQEDDMLDKAWGLEPESRLSCQARVTD--EDLVVEIPRYTINH 107
>1l5p_A Ferredoxin; [2Fe-2S] cluster, electron transfer, iron-sulfur
protein, metalloprotein, oxidoreductase; 2.20A
{Trichomonas vaginalis} SCOP: d.15.4.1
Length = 93
Score = 120 bits (303), Expect = 2e-35
Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 8/99 (8%)
Query: 118 NITFIDKDGKRREIKGKVGDNVLYLAHRYEIP-MEGACEASLACTTCHVYVKHEYLDALP 176
IT + K G ++++K + + + + + C+ + AC C +
Sbjct: 2 TITAV-KGGVKKQLKFEDDQTLFTVLTEAGLMSADDTCQGNKACGKCICKHV---SGKVA 57
Query: 177 PAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTL 215
AE+ E + L+ N+RL C I L+ E +G L
Sbjct: 58 AAEDDEKEFLE---DQPANARLACAITLSGENDGAVFEL 93
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase,
ATP-binding, microtubule INT and trafficking domain,
nucleotide-binding; HET: SRT; 2.40A {Sulfolobus
solfataricus} PDB: 2v6y_B*
Length = 83
Score = 48.9 bits (116), Expect = 3e-08
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 3 LPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETANSSSDENVA-AWRQKAQQYLN 61
L + A +AVK D+E + E A YY+ A L + + A+ Q +Y
Sbjct: 7 LEDMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQIIVLYPESVARTAYEQMINEYKK 66
Query: 62 RAEVLKDKIQ 71
R L+ +
Sbjct: 67 RISYLEKVLP 76
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport,
vacuole, endosome, transport, ESCRT-III, VPS2, VPS4,
SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Length = 85
Score = 47.2 bits (112), Expect = 1e-07
Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 8 INAAQMAVKFDEENQDEIAAYYYQAAARFLLETANSSSDENV-AAWRQKAQQYLNRAEVL 66
I Q A+ D Q E A Y +L+ + R K +YLNRAE L
Sbjct: 14 IELVQKAIDLDTATQYEEAYTAYYNGLDYLMLALKYEKNPKSKDLIRAKFTEYLNRAEQL 73
Query: 67 KDKIQ 71
K ++
Sbjct: 74 KKHLE 78
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Length = 93
Score = 46.8 bits (111), Expect = 2e-07
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 8 INAAQMAVKFDEENQDEIAAYYYQAAARFLLETANSSSDENV-AAWRQKAQQYLNRAEVL 66
+ + AV+ D E++ + A YQ LL+ + + + R K Y++RAE +
Sbjct: 16 VAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYMDRAENI 75
Query: 67 KDKIQ 71
K +
Sbjct: 76 KKYLD 80
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
a.7.14.1
Length = 117
Score = 47.4 bits (112), Expect = 2e-07
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 8 INAAQMAVKFDEENQDEIAAYYYQAAARFLLETANSSSDENVA--AWRQKAQQYLNRAEV 65
I+ A A + D+ E A YQ A ++ L + + A + R K +YL+RAE
Sbjct: 19 IDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEK 78
Query: 66 LKDKIQ 71
LK+ ++
Sbjct: 79 LKEYLK 84
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex,
nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis,
ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Length = 83
Score = 45.0 bits (106), Expect = 6e-07
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 3 LPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETANSSSDENVA-AWRQKAQQYLN 61
L E A AVK D+E E A Y+ A L + + D + A + Q +Y
Sbjct: 15 LEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQLVSLYRDGSTAAIYEQMINEYKR 74
Query: 62 RAEVLKDKI 70
R EVLK+ I
Sbjct: 75 RIEVLKELI 83
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.9 bits (103), Expect = 2e-05
Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 30/89 (33%)
Query: 8 INAAQMAVKFDEENQDEIAAYYYQAAAR--FLLETANSSSDENVAAWRQKAQQY------ 59
IN ++A F +E + + R +L+E N NV QQY
Sbjct: 1812 INPGRVAASFSQEALQYVVE---RVGKRTGWLVEIVN----YNVE-----NQQYVAAGDL 1859
Query: 60 --LNRA-EVLKD-KIQVMFLRNL-LCKLP 83
L+ VL K+Q + + +L
Sbjct: 1860 RALDTVTNVLNFIKLQ-----KIDIIELQ 1883
Score = 40.0 bits (93), Expect = 5e-04
Identities = 39/266 (14%), Positives = 73/266 (27%), Gaps = 85/266 (31%)
Query: 3 LPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETANSSSDENVAAWRQKAQQYLNR 62
LPE A D+E + +FL ++ V
Sbjct: 41 LPEPTEGFAA-----DDEPTTPA-----ELVGKFLGYVSSLVEPSKVGQ----------F 80
Query: 63 AEVLKDKIQVMFLRNLLCKLPPVVRPNNVHRIHTSVCTRHGEYEWQDPKSEDEIVN---- 118
+VL + F L N+ IH E + K+++ I N
Sbjct: 81 DQVLNLCLT-EFENCYL-------EGND---IHALAAKLLQENDTTLVKTKELIKNYITA 129
Query: 119 ITFIDKDGKRRE--------IKGKV---------GDNVLY---LAHRYEI--PMEGACEA 156
+ ++ +G G+ Y L Y+ + G
Sbjct: 130 RIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIK 189
Query: 157 SLACTTCHVYVKHEYLDALPPAEEKEDDL----LDLAPFLKD-NSRLGCQIILTKELEGI 211
A E L L + + L++ +L++ ++ +L+ I
Sbjct: 190 FSA----------ETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLS-----I 234
Query: 212 EVTLP----KATRNFYVD----GHTP 229
++ P ++ V G TP
Sbjct: 235 PISCPLIGVIQLAHYVVTAKLLGFTP 260
Score = 30.0 bits (67), Expect = 0.81
Identities = 30/189 (15%), Positives = 54/189 (28%), Gaps = 44/189 (23%)
Query: 8 INAAQMAVKFDEENQDEIAA------YYYQA---AARFLLETANSSSDENVAAWRQKAQQ 58
I+A A K +EN + Y A A R + +NS+ A AQ
Sbjct: 101 IHAL--AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFR--AVGEGNAQL 156
Query: 59 YL------NRAEVLKDKIQVMFLRNLLCKLPPVVRPNNVHRIHTSVCTRHGEYEWQDPKS 112
N + ++ LR+L +V + + + K
Sbjct: 157 VAIFGGQGNTDDYFEE------LRDLYQTYHVLVGD--LIKFSAETLSELIRTTLDAEKV 208
Query: 113 EDEIVNI-TFIDKDGKRREIKGKVGDNVLYLAH-RYEIPMEGACEASLACTTCHVYVKHE 170
+ +NI +++ + YL P+ G + + T +
Sbjct: 209 FTQGLNILEWLENPSNTP--------DKDYLLSIPISCPLIGVIQLAHYVVTAKLL---- 256
Query: 171 YLDALPPAE 179
P E
Sbjct: 257 ---GFTPGE 262
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.8 bits (79), Expect = 0.022
Identities = 36/274 (13%), Positives = 81/274 (29%), Gaps = 89/274 (32%)
Query: 3 LPEEVINAAQMAVKFDE--ENQDEIAAYYY----------QAAARFLLETANSSSDENVA 50
+P+ +++ + D ++D ++ + +F+ E + ++
Sbjct: 41 MPKSILSKEE----IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS 96
Query: 51 AWRQKAQQYLNRAEVLKDKIQVMFL--RNLLCKLPPVVRPNNVHRIHTSVCTR------- 101
+ + +Q + M++ R+ L V NV R+ + R
Sbjct: 97 PIKTEQRQ--------PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148
Query: 102 -------HG---------------EYEWQDPKSEDEIVNITFIDKDGKRREIKGKVGDNV 139
G Y+ Q K + +I + + + + +
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQC-KMDFKIFWLNL----KNCNSPETVL-EML 202
Query: 140 LYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSR-- 197
L ++ + + S ++ L L ++ E+ LL L N +
Sbjct: 203 QKLLYQIDPNWTSRSDHSSN-IKLRIHSIQAELRRLLKSKPYENCLLVL-----LNVQNA 256
Query: 198 -------LGCQIILTKELEGIEVTLPKATRNFYV 224
L C+I+LT TR V
Sbjct: 257 KAWNAFNLSCKILLT-------------TRFKQV 277
Score = 27.9 bits (61), Expect = 3.3
Identities = 28/167 (16%), Positives = 49/167 (29%), Gaps = 56/167 (33%)
Query: 35 RFLLETANSSSDENVAAWRQKAQQYLNRAEVL-KDKIQVMFLRNLLCK---LPPVVRPNN 90
+ LL T + ++A + + L D+++ + L+ L C+ LP V
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL--T 324
Query: 91 VHRIHTSVC---TRHGEYEWQDPKSEDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYE 147
+ S+ R G W N ++ D I
Sbjct: 325 TNPRRLSIIAESIRDGLATWD---------NWKHVNCDKLTTII---------------- 359
Query: 148 IPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKD 194
E+SL + L PAE ++ L+ F
Sbjct: 360 -------ESSL--------------NVLEPAEYRK-MFDRLSVFPPS 384
>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein,
ashka family, ATPase; 2.20A {Carboxydothermus
hydrogenoformans}
Length = 631
Score = 32.5 bits (73), Expect = 0.098
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 117 VNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHV 165
+ F D K E+ N++ + I ++ C + C C V
Sbjct: 4 YKVLF-KPDQK--EVAISENTNLMEALNLAGINIKTVCGGAGTCGKCLV 49
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding,
ferredoxin, NADH-binding, oxidoreductase; HET: FAD;
1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2
d.15.4.2
Length = 338
Score = 32.0 bits (73), Expect = 0.15
Identities = 22/101 (21%), Positives = 34/101 (33%), Gaps = 22/101 (21%)
Query: 118 NITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKH-EYL---- 172
+ +DG R I G+ + A+R +I + C C TC + + Y
Sbjct: 5 QVALQFEDGVTRFICIAQGETLSDAAYRQQINIPMDC-REGECGTCRAFCESGNYDMPED 63
Query: 173 ----DALPPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELE 209
DAL P E ++ L CQ T +
Sbjct: 64 NYIEDALTPEEAQQ------------GYVLACQCRPTSDAV 92
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin,
oxidoreductase; NMR {Methylococcus capsulatus str} SCOP:
d.15.4.2
Length = 98
Score = 29.9 bits (68), Expect = 0.21
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
Query: 118 NITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYV---KHEYLD- 173
IT + +DG+ + + ++V+ A R I + +C C TC ++
Sbjct: 6 TITAVTEDGESLRFECRSDEDVITAALRQNIFLMSSCREG-GCATCKALCSEGDYDLKGC 64
Query: 174 ---ALPPAEEKE 182
ALPP EE+E
Sbjct: 65 SVQALPPEEEEE 76
>3nx6_A 10KDA chaperonin; bacterial blight, XOO4289, groes, xanthomonas
oryzae PV. ORY KACC10331, chaperone; 1.97A {Xanthomonas
oryzae PV}
Length = 95
Score = 28.6 bits (65), Expect = 0.52
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 122 IDKDGKRREIKGKVGDNVLY 141
+G KVGD V+Y
Sbjct: 48 PLDNGSLHAPVVKVGDKVIY 67
>1we3_O CPN10(groes); chaperonin, chaperone, groel, HSP60, HSP10, folding,
ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP:
b.35.1.1 PDB: 1wf4_o* 1wnr_A
Length = 100
Score = 28.7 bits (65), Expect = 0.64
Identities = 6/20 (30%), Positives = 14/20 (70%)
Query: 122 IDKDGKRREIKGKVGDNVLY 141
+ ++G+R ++ K GD V++
Sbjct: 53 VLENGQRVPLEVKEGDIVVF 72
>1pcq_O Groes protein; chaperone; HET: ADP; 2.81A {Escherichia coli} SCOP:
b.35.1.1 PDB: 1gru_O 1aon_O* 1pf9_O* 1svt_O* 1sx4_O*
2c7c_O 2c7d_O
Length = 97
Score = 27.9 bits (63), Expect = 1.2
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 122 IDKDGKRREIKGKVGDNVLY 141
I ++G+ + + KVGD V++
Sbjct: 48 ILENGEVKPLDVKVGDIVIF 67
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein
structure initiative, midwest center for structural
genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP:
e.59.1.1
Length = 309
Score = 28.2 bits (62), Expect = 2.0
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Query: 159 ACTTCHVYVKHEYLDALPPAEEKEDDL----LDLA 189
C +C Y+K YL+ A+ DDL LD+
Sbjct: 255 TCPSCQGYLKQFYLEFDRHADALADDLASLALDMR 289
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR),
beta-hairpin, alpha-solenoi transport protein; 2.60A
{Bos taurus}
Length = 291
Score = 28.2 bits (62), Expect = 2.2
Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 5/63 (7%)
Query: 5 EEVINAAQMAVKFDEENQDEIAAYYYQAA-----ARFLLETANSSSDENVAAWRQKAQQY 59
++ IN AQ E E + Y+A +L+ SS + A R A+
Sbjct: 16 QQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYL 75
Query: 60 LNR 62
+
Sbjct: 76 ASH 78
>3oyy_A EF-P, elongation factor P; translation; 1.75A {Pseudomonas
aeruginosa}
Length = 191
Score = 27.9 bits (63), Expect = 2.3
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 182 EDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLP 216
+DDL + F++D C+ + + + I V LP
Sbjct: 97 KDDLEGVLTFIEDGMTDICEAVFYND-KVISVELP 130
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase,
structural genomics, PSI, PR structure initiative,
nysgrc; 2.20A {Streptomyces coelicolor}
Length = 352
Score = 27.7 bits (62), Expect = 3.7
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 169 HEYLDALPPAEEKEDDLLDLAPFL 192
E LDA+ + D LA F+
Sbjct: 316 IEALDAVDMPDRVRDRFTALADFV 339
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.4 bits (60), Expect = 3.7
Identities = 9/66 (13%), Positives = 24/66 (36%), Gaps = 18/66 (27%)
Query: 4 PEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETANSSSDENVAAWRQKAQQ----- 58
+ + + K+ EE + + + +++S WR+KA++
Sbjct: 77 ADRLTQEPESIRKWREEQRKRL-------------QELDAASKVMEQEWREKAKKDLEEW 123
Query: 59 YLNRAE 64
++E
Sbjct: 124 NQRQSE 129
>3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix
bundle, structural genomics protein structure
initiative; HET: PGE; 2.12A {Streptococcus mutans}
Length = 405
Score = 26.6 bits (58), Expect = 8.4
Identities = 6/43 (13%), Positives = 13/43 (30%), Gaps = 5/43 (11%)
Query: 26 AAYYYQAAARFLLETANSSSDENVAAWRQKAQQYLNRAEVLKD 68
A + +AA +F D ++ ++ A
Sbjct: 95 ACFSIRAALQFTDPK-----DSEFMENFRRMEKLFMLAVDNSK 132
>2js9_A Saposin-like protein family protein 5; caenopore-5, saposin-like
fold, antimicrobial protein; NMR {Caenorhabditis
elegans} PDB: 2jsa_A
Length = 99
Score = 25.2 bits (54), Expect = 8.7
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 144 HRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLL 186
H + +EG ++L+C C + VK A A + D
Sbjct: 8 HHHSSGIEGRGRSALSCQMCELVVKKYEGSADKDANVIKKDFD 50
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural
genomics, protein structure initiative, PSI; NMR {Homo
sapiens}
Length = 125
Score = 25.4 bits (55), Expect = 9.6
Identities = 8/44 (18%), Positives = 17/44 (38%)
Query: 102 HGEYEWQDPKSEDEIVNITFIDKDGKRREIKGKVGDNVLYLAHR 145
H + + +++N+ I GK +E D+ +A
Sbjct: 3 HHHHHLESSNVPADMINLRLILVSGKTKEFLFSPNDSASDIAKH 46
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 116
Score = 25.5 bits (55), Expect = 9.8
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Query: 12 QMAVKFDEENQDEIAAYYYQAAARFLLETANSSSDENVAAWRQKAQQYLNRAEVLKDKIQ 71
+ DE Q E A YY+ LL + SS E+ + A ++ K++
Sbjct: 27 NKGLNTDELGQKEEAKNYYKQGIGHLLRGISISSKES----EHTGPGW-ESARQMQQKMK 81
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0556 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,746,078
Number of extensions: 221676
Number of successful extensions: 676
Number of sequences better than 10.0: 1
Number of HSP's gapped: 650
Number of HSP's successfully gapped: 49
Length of query: 232
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 142
Effective length of database: 4,188,903
Effective search space: 594824226
Effective search space used: 594824226
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.7 bits)