RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1437
(232 letters)
>d2bt6a1 d.15.4.1 (A:5-108) Adrenodoxin {Cow (Bos taurus) [TaxId:
9913]}
Length = 104
Score = 110 bits (277), Expect = 5e-32
Identities = 41/104 (39%), Positives = 68/104 (65%), Gaps = 2/104 (1%)
Query: 115 EIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEG--ACEASLACTTCHVYVKHEYL 172
+ + + FI++DG+ KGK+GD++L + + + ++G ACE +LAC+TCH+ +
Sbjct: 1 DKITVHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHIF 60
Query: 173 DALPPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLP 216
+ L ++E+D+LDLA L D SRLGCQI LTK ++ + V +P
Sbjct: 61 EKLEAITDEENDMLDLAYGLTDRSRLGCQICLTKAMDNMTVRVP 104
>d1b9ra_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Pseudomonas sp.,
terpredoxin [TaxId: 306]}
Length = 105
Score = 104 bits (260), Expect = 2e-29
Identities = 23/100 (23%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 119 ITFIDKDGKRREIKGKVGDNVLYLAHRYEIP-MEGACEASLACTTCHVYVKHEYLDALPP 177
+ FID+ + + G +++ +A + +P + C S C TC + ++ +++ +
Sbjct: 3 VVFIDEQSGEYAVDAQDGQSLMEVATQNGVPGIVAECGGSCVCATCRIEIEDAWVEIVGE 62
Query: 178 AEEKEDDLLDLAPF-LKDNSRLGCQIILTKELEGIEVTLP 216
A E+DLL + +RL CQ+ + ++G+ V +P
Sbjct: 63 ANPDENDLLQSTGEPMTAGTRLSCQVFIDPSMDGLIVRVP 102
>d1xlqa1 d.15.4.1 (A:1-106) 2Fe-2S ferredoxin {Pseudomonas putida,
putidaredoxin [TaxId: 303]}
Length = 106
Score = 102 bits (255), Expect = 1e-28
Identities = 41/100 (41%), Positives = 59/100 (59%), Gaps = 2/100 (2%)
Query: 119 ITFIDKDGKRREIKGKVGDNVLYLAHRYEIP-MEGACEASLACTTCHVYVKHEYLDALPP 177
+ ++ DG RRE+ G +++ A I + G C S +C TCHVYV + D +P
Sbjct: 3 VVYVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVPA 62
Query: 178 AEEKEDDLLD-LAPFLKDNSRLGCQIILTKELEGIEVTLP 216
A E+E +L+ + LK NSRL CQII+T EL+GI V +P
Sbjct: 63 ANEREIGMLESVTAELKPNSRLCCQIIMTPELDGIVVDVP 102
>d1e9ma_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Rhodobacter capsulatus,
ferredoxin VI [TaxId: 1061]}
Length = 106
Score = 97.8 bits (243), Expect = 6e-27
Identities = 39/101 (38%), Positives = 57/101 (56%), Gaps = 2/101 (1%)
Query: 119 ITFIDKDGKRREIKGKVGDNVLYLAHRYEIP-MEGACEASLACTTCHVYVKHEYLDALPP 177
I FI+ +G R E++ K G V+ A +P ++ C + AC+TCH YV ++D LP
Sbjct: 3 IIFIEHNGTRHEVEAKPGLTVMEAARDNGVPGIDADCGGACACSTCHAYVDPAWVDKLPK 62
Query: 178 AEEKEDDLLDLAPFL-KDNSRLGCQIILTKELEGIEVTLPK 217
A E D++D A SRL CQI +T L+G+ V LP+
Sbjct: 63 ALPTETDMIDFAYEPNPATSRLTCQIKVTSLLDGLVVHLPE 103
>d1i7ha_ d.15.4.1 (A:) Adrenodoxin-like ferredoxin {Escherichia coli
[TaxId: 562]}
Length = 109
Score = 90.1 bits (223), Expect = 6e-24
Identities = 40/107 (37%), Positives = 57/107 (53%), Gaps = 6/107 (5%)
Query: 119 ITFIDKDG---KRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDAL 175
I + ++ G+ +L A R I +E ACE S ACTTCH V+ + D+L
Sbjct: 3 IVILPHQDLCPDGAVLEANSGETILDAALRNGIEIEHACEKSCACTTCHCIVREGF-DSL 61
Query: 176 PPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLPKATRNF 222
P + E+EDD+LD A L+ SRL CQ +T E + V +P+ T N
Sbjct: 62 PESSEQEDDMLDKAWGLEPESRLSCQARVTD--EDLVVEIPRYTINH 106
>d1l5pa_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Trichomonas vaginalis
[TaxId: 5722]}
Length = 93
Score = 85.1 bits (210), Expect = 3e-22
Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 8/99 (8%)
Query: 118 NITFIDKDGKRREIKGKVGDNVLYLAHRYEIP-MEGACEASLACTTCHVYVKHEYLDALP 176
IT + K G ++++K + + + + + C+ + AC C +
Sbjct: 2 TITAV-KGGVKKQLKFEDDQTLFTVLTEAGLMSADDTCQGNKACGKCICKHVS---GKVA 57
Query: 177 PAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTL 215
AE+ E + L N+RL C I L+ E +G L
Sbjct: 58 AAEDDEKEFL---EDQPANARLACAITLSGENDGAVFEL 93
>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 93
Score = 53.7 bits (129), Expect = 2e-10
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 8 INAAQMAVKFDEENQDEIAAYYYQAAARFLLETANSSSDENVA-AWRQKAQQYLNRAEVL 66
+ + AV+ D E++ + A YQ LL+ + + + R K Y++RAE +
Sbjct: 16 VAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYMDRAENI 75
Query: 67 KDKIQ 71
K +
Sbjct: 76 KKYLD 80
>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B,
SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}
Length = 77
Score = 50.6 bits (121), Expect = 2e-09
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 5 EEVINAAQMAVKFDEENQDEIAAYYYQAAARFLL--ETANSSSDENVAAWRQKAQQYLNR 62
++ I+ A A + D+ E A YQ A ++ L + D+ + R K +YL+R
Sbjct: 9 QKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDR 68
Query: 63 AEVLKDKIQ 71
AE LK+ ++
Sbjct: 69 AEKLKEYLK 77
>d1jq4a_ d.15.4.2 (A:) Methane monooxygenase reductase N-terminal
domain {Methylococcus capsulatus [TaxId: 414]}
Length = 98
Score = 43.1 bits (101), Expect = 1e-06
Identities = 19/96 (19%), Positives = 36/96 (37%), Gaps = 7/96 (7%)
Query: 118 NITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPP 177
IT + +DG+ + + ++V+ A R I + +C C TC D
Sbjct: 6 TITAVTEDGESLRFECRSDEDVITAALRQNIFLMSSCREG-GCATCKALCSEGDYDLKGC 64
Query: 178 AEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEV 213
+ + ++ L C+ +LE IE+
Sbjct: 65 SVQALPPEE-----EEEGLVLLCRTYPKTDLE-IEL 94
>d1krha3 d.15.4.2 (A:2-105) Benzoate dioxygenase reductase,
N-terminal domain {Acinetobacter sp. [TaxId: 472]}
Length = 104
Score = 42.6 bits (100), Expect = 2e-06
Identities = 20/96 (20%), Positives = 33/96 (34%), Gaps = 5/96 (5%)
Query: 118 NITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPP 177
+ +DG R I G+ + A+R +I + C C TC + +P
Sbjct: 4 QVALQFEDGVTRFICIAQGETLSDAAYRQQINIPMDCREG-ECGTCRAF-CESGNYDMPE 61
Query: 178 AEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEV 213
ED L + L CQ T + ++
Sbjct: 62 DNYIEDALTP--EEAQQGYVLACQCRPTSDAV-FQI 94
>d2fug33 d.15.4.2 (3:1-95) Nadh-quinone oxidoreductase chain 3,
Nqo3, N-terminal domain {Thermus thermophilus [TaxId:
274]}
Length = 95
Score = 41.8 bits (97), Expect = 5e-06
Identities = 12/102 (11%), Positives = 27/102 (26%), Gaps = 15/102 (14%)
Query: 117 VNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGAC-----EASLACTTCHVYVKHEY 171
V + + + ++ G +V+ + C AC C V +
Sbjct: 2 VRVKV---NDR--IVEVPPGTSVMDAVFHAGYDVPLFCSEKHLSPIGACRMCLVRIGLPK 56
Query: 172 LDALPPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEV 213
E ++ + C + +G+ V
Sbjct: 57 KGPDGKPLLNEKGEPEIQ--WQPKLAASCVTAVA---DGMVV 93
>d2fiya1 e.59.1.1 (A:19-308) FdhE homolog PA4809 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 290
Score = 28.3 bits (63), Expect = 0.79
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 5/58 (8%)
Query: 136 GDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDL----LDLA 189
L L H + + A C +C Y+K YL+ A+ DDL LD+
Sbjct: 215 HLAYLSLEHDGQPAEKAVLRAE-TCPSCQGYLKQFYLEFDRHADALADDLASLALDMR 271
>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia
coli [TaxId: 562]}
Length = 268
Score = 26.1 bits (56), Expect = 4.4
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 155 EASLACTTCHVY--VKHEYLDALPPAEEKEDDLLDLAPFL 192
+ S C H + K Y++ LP ++ D D A +
Sbjct: 15 KNSYICPQRHQFDMAKEGYVNLLPVQHKRSRDPGDSAEMM 54
>d1sp3a_ a.138.1.3 (A:) Putative Cytochrome c {Shewanella oneidensis
[TaxId: 70863]}
Length = 442
Score = 26.1 bits (56), Expect = 4.7
Identities = 9/62 (14%), Positives = 16/62 (25%)
Query: 123 DKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKE 182
G +K D+ + + + + C CH KH+
Sbjct: 144 FYGGGGDAVKHGDLDSSMAYPDKATDVHMDSDGNNFQCQNCHTTEKHQISGNAMGVSPGG 203
Query: 183 DD 184
D
Sbjct: 204 ID 205
>d1k6ya1 a.4.10.1 (A:1-46) N-terminal Zn binding domain of HIV
integrase {Human immunodeficiency virus type 1 [TaxId:
11676]}
Length = 46
Score = 23.5 bits (51), Expect = 5.3
Identities = 12/45 (26%), Positives = 19/45 (42%)
Query: 121 FIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHV 165
F+D K +E K N +A + +P A E +C C +
Sbjct: 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQL 45
>d1e0ea_ a.4.10.1 (A:) N-terminal Zn binding domain of HIV integrase
{Human immunodeficiency virus type 2 [TaxId: 11709]}
Length = 46
Score = 23.1 bits (50), Expect = 7.9
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 121 FIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCH 164
F++K +E K NV L+H++ IP A + +C C
Sbjct: 1 FLEKIEPAQEEHEKYHSNVKELSHKFGIPNLVARQIVNSCAQCQ 44
>d1mxaa2 d.130.1.1 (A:108-231) S-adenosylmethionine synthetase
{Escherichia coli [TaxId: 562]}
Length = 124
Score = 24.1 bits (52), Expect = 9.9
Identities = 7/56 (12%), Positives = 17/56 (30%)
Query: 63 AEVLKDKIQVMFLRNLLCKLPPVVRPNNVHRIHTSVCTRHGEYEWQDPKSEDEIVN 118
AEV K+ + ++ + I V + E ++ ++
Sbjct: 42 AEVRKNGTLPWLRPDAKSQVTFQYDDGKIVGIDAVVLSTQHSEEIDQKSLQEAVME 97
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0506 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 915,738
Number of extensions: 42888
Number of successful extensions: 202
Number of sequences better than 10.0: 1
Number of HSP's gapped: 187
Number of HSP's successfully gapped: 24
Length of query: 232
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 150
Effective length of database: 1,281,736
Effective search space: 192260400
Effective search space used: 192260400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.0 bits)