BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14371
(286 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T9R|A Chain A, Catalytic Domain Of Human Phosphodiesterase 5a
Length = 366
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 36/55 (65%), Positives = 50/55 (90%)
Query: 50 KVAELVSSEFFEQGDIERQELNITPIDIMNREKEDQLPLMQVGFIDSICLPIYES 104
++AELV++EFF+QGD ER+ELNI P D+MNREK++++P MQVGFID+ICL +YE+
Sbjct: 268 RIAELVATEFFDQGDRERKELNIEPTDLMNREKKNKIPSMQVGFIDAICLQLYEA 322
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 30/111 (27%)
Query: 139 INNVSPDEYSRIIKVLEEAILSTDLAVYFRQRGSFLSLVKGGSLAWHREADRDLAVYFRQ 198
++ +S +EY +K++++AIL+TDLA+Y ++
Sbjct: 192 LSGLSIEEYKTTLKIIKQAILATDLALYI-----------------------------KR 222
Query: 199 RGSFLSLVKGGSLAWHREADRGLLRGMTMTVCDLAAITKPWHVEKRAFAEL 249
RG F L++ + L M MT CDL+AITKPW +++R AEL
Sbjct: 223 RGEFFELIRKNQFNLEDPHQKELFLAMLMTACDLSAITKPWPIQQR-IAEL 272
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 16 KLHDLPSLRVPSAAKLNLHDFKFDDIHMEDDDT 48
+L L + VPSA L + DF F D + D +T
Sbjct: 30 ELQSLAAAVVPSAQTLKITDFSFSDFELSDLET 62
>pdb|3B2R|A Chain A, Crystal Structure Of Pde5a1 Catalytic Domain In Complex
With Vardenafil
pdb|3B2R|B Chain B, Crystal Structure Of Pde5a1 Catalytic Domain In Complex
With Vardenafil
Length = 330
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 36/55 (65%), Positives = 50/55 (90%)
Query: 50 KVAELVSSEFFEQGDIERQELNITPIDIMNREKEDQLPLMQVGFIDSICLPIYES 104
++AELV++EFF+QGD ER+ELNI P D+MNREK++++P MQVGFID+ICL +YE+
Sbjct: 247 RIAELVATEFFDQGDRERKELNIEPTDLMNREKKNKIPSMQVGFIDAICLQLYEA 301
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 30/111 (27%)
Query: 139 INNVSPDEYSRIIKVLEEAILSTDLAVYFRQRGSFLSLVKGGSLAWHREADRDLAVYFRQ 198
++ +S +EY +K++++AIL+TDLA+Y ++
Sbjct: 171 LSGLSIEEYKTTLKIIKQAILATDLALYI-----------------------------KR 201
Query: 199 RGSFLSLVKGGSLAWHREADRGLLRGMTMTVCDLAAITKPWHVEKRAFAEL 249
RG F L++ + L M MT CDL+AITKPW +++R AEL
Sbjct: 202 RGEFFELIRKNQFNLEDPHQKELFLAMLMTACDLSAITKPWPIQQR-IAEL 251
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 16 KLHDLPSLRVPSAAKLNLHDFKFDDIHMEDDDT 48
+L L + VPSA L + DF F D + D +T
Sbjct: 9 ELQSLAAAVVPSAQTLKITDFSFSDFELSDLET 41
>pdb|1UDT|A Chain A, Crystal Structure Of Human Phosphodiesterase 5 Complexed
With Sildenafil(Viagra)
pdb|1UDU|A Chain A, Crystal Structure Of Human Phosphodiesterase 5 Complexed
With Tadalafil(Cialis)
pdb|1UDU|B Chain B, Crystal Structure Of Human Phosphodiesterase 5 Complexed
With Tadalafil(Cialis)
pdb|1UHO|A Chain A, Crystal Structure Of Human Phosphodiesterase 5 Complexed
With Vardenafil(Levitra)
Length = 324
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 36/55 (65%), Positives = 50/55 (90%)
Query: 50 KVAELVSSEFFEQGDIERQELNITPIDIMNREKEDQLPLMQVGFIDSICLPIYES 104
++AELV++EFF+QGD ER+ELNI P D+MNREK++++P MQVGFID+ICL +YE+
Sbjct: 241 RIAELVATEFFDQGDRERKELNIEPTDLMNREKKNKIPSMQVGFIDAICLQLYEA 295
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 30/111 (27%)
Query: 139 INNVSPDEYSRIIKVLEEAILSTDLAVYFRQRGSFLSLVKGGSLAWHREADRDLAVYFRQ 198
++ +S +EY +K++++AIL+TDLA+Y ++
Sbjct: 165 LSGLSIEEYKTTLKIIKQAILATDLALYI-----------------------------KR 195
Query: 199 RGSFLSLVKGGSLAWHREADRGLLRGMTMTVCDLAAITKPWHVEKRAFAEL 249
RG F L++ + L M MT CDL+AITKPW +++R AEL
Sbjct: 196 RGEFFELIRKNQFNLEDPHQKELFLAMLMTACDLSAITKPWPIQQR-IAEL 245
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 16 KLHDLPSLRVPSAAKLNLHDFKFDDIHMEDDDT 48
+L L + VPSA L + DF F D + D +T
Sbjct: 3 ELQSLAAAVVPSAQTLKITDFSFSDFELSDLET 35
>pdb|2H40|A Chain A, Crystal Structure Of The Catalytic Domain Of Unliganded
Pde5
pdb|2H42|A Chain A, Crystal Structure Of Pde5 In Complex With Sildenafil
pdb|2H42|B Chain B, Crystal Structure Of Pde5 In Complex With Sildenafil
pdb|2H42|C Chain C, Crystal Structure Of Pde5 In Complex With Sildenafil
pdb|2H44|A Chain A, Crystal Structure Of Pde5a1 In Complex With Icarisid Ii
Length = 326
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 36/55 (65%), Positives = 50/55 (90%)
Query: 50 KVAELVSSEFFEQGDIERQELNITPIDIMNREKEDQLPLMQVGFIDSICLPIYES 104
++AELV++EFF+QGD ER+ELNI P D+MNREK++++P MQVGFID+ICL +YE+
Sbjct: 243 RIAELVATEFFDQGDRERKELNIEPTDLMNREKKNKIPSMQVGFIDAICLQLYEA 297
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 30/111 (27%)
Query: 139 INNVSPDEYSRIIKVLEEAILSTDLAVYFRQRGSFLSLVKGGSLAWHREADRDLAVYFRQ 198
++ +S +EY +K++++AIL+TDLA+Y ++
Sbjct: 167 LSGLSIEEYKTTLKIIKQAILATDLALYI-----------------------------KR 197
Query: 199 RGSFLSLVKGGSLAWHREADRGLLRGMTMTVCDLAAITKPWHVEKRAFAEL 249
RG F L++ + L M MT CDL+AITKPW +++R AEL
Sbjct: 198 RGEFFELIRKNQFNLEDPHQKELFLAMLMTACDLSAITKPWPIQQR-IAEL 247
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 16 KLHDLPSLRVPSAAKLNLHDFKFDDIHMEDDDT 48
+L L + VPSA L + DF F D + D +T
Sbjct: 5 ELQSLAAAVVPSAQTLKITDFSFSDFELSDLET 37
>pdb|3HC8|A Chain A, Investigation Of Aminopyridiopyrazinones As Pde5
Inhibitors: Evaluation Of Modifications To The Central
Ring System.
pdb|3HDZ|A Chain A, Identification, Synthesis, And Sar Of Amino Substituted
Pyrido[3,2b]pryaziones As Potent And Selective Pde5
Inhibitors
Length = 324
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 36/55 (65%), Positives = 50/55 (90%)
Query: 50 KVAELVSSEFFEQGDIERQELNITPIDIMNREKEDQLPLMQVGFIDSICLPIYES 104
++AELV++EFF+QGD ER+ELNI P D+MNREK++++P MQVGFID+ICL +YE+
Sbjct: 243 RIAELVATEFFDQGDRERKELNIEPTDLMNREKKNKIPSMQVGFIDAICLQLYEA 297
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 57/111 (51%), Gaps = 30/111 (27%)
Query: 139 INNVSPDEYSRIIKVLEEAILSTDLAVYFRQRGSFLSLVKGGSLAWHREADRDLAVYFRQ 198
++ +S +EY +K++++AIL+TDLA+Y ++RG F L++ +++L
Sbjct: 167 LSGLSIEEYKTTLKIIKQAILATDLALYIKRRGEFFELIRKNQFNLEDPHEKEL------ 220
Query: 199 RGSFLSLVKGGSLAWHREADRGLLRGMTMTVCDLAAITKPWHVEKRAFAEL 249
FL M MT CDL+AITKPW +++R AEL
Sbjct: 221 ---FL--------------------AMLMTACDLSAITKPWPIQQR-IAEL 247
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 16 KLHDLPSLRVPSAAKLNLHDFKFDDIHMEDDDT 48
+L L + VPSA L + DF F D + D +T
Sbjct: 4 ELQSLAAAVVPSAQTLKITDFSFSDFELSDLET 36
>pdb|1XOZ|A Chain A, Catalytic Domain Of Human Phosphodiesterase 5a In Complex
With Tadalafil
pdb|1XP0|A Chain A, Catalytic Domain Of Human Phosphodiesterase 5a In Complex
With Vardenafil
Length = 364
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 36/55 (65%), Positives = 50/55 (90%)
Query: 50 KVAELVSSEFFEQGDIERQELNITPIDIMNREKEDQLPLMQVGFIDSICLPIYES 104
++AELV++EFF+QGD ER+ELNI P D+MNREK++++P MQVGFID+ICL +YE+
Sbjct: 266 RIAELVATEFFDQGDRERKELNIEPTDLMNREKKNKIPSMQVGFIDAICLQLYEA 320
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 30/111 (27%)
Query: 139 INNVSPDEYSRIIKVLEEAILSTDLAVYFRQRGSFLSLVKGGSLAWHREADRDLAVYFRQ 198
++ +S +EY +K++++AIL+TDLA+Y ++
Sbjct: 190 LSGLSIEEYKTTLKIIKQAILATDLALYI-----------------------------KR 220
Query: 199 RGSFLSLVKGGSLAWHREADRGLLRGMTMTVCDLAAITKPWHVEKRAFAEL 249
RG F L++ + L M MT CDL+AITKPW +++R AEL
Sbjct: 221 RGEFFELIRKNQFNLEDPHQKELFLAMLMTACDLSAITKPWPIQQR-IAEL 270
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 16 KLHDLPSLRVPSAAKLNLHDFKFDDIHMEDDDT 48
+L L + VPSA L + DF F D + D +T
Sbjct: 27 ELQSLAAAVVPSAQTLKITDFSFSDFELSDLET 59
>pdb|3SHY|A Chain A, Crystal Structure Of The Pde5a1 Catalytic Domain In
Complex With Novel Inhibitors
pdb|3SHZ|A Chain A, Crystal Structure Of The Pde5a1 Catalytic Domain In
Complex With Novel Inhibitors
pdb|3SIE|A Chain A, Crystal Structure Of The Pde5a1 Catalytic Domain In
Complex With Novel Inhibitors
pdb|3SIE|B Chain B, Crystal Structure Of The Pde5a1 Catalytic Domain In
Complex With Novel Inhibitors
pdb|3TSE|A Chain A, Crystal Structure Of The Pde5a1 Catalytic Domain In
Complex With Novel Inhibitors
pdb|3TSF|A Chain A, Crystal Structure Of The Pde5a1 Catalytic Domain In
Complex With Novel Inhibitors
Length = 347
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 36/55 (65%), Positives = 50/55 (90%)
Query: 50 KVAELVSSEFFEQGDIERQELNITPIDIMNREKEDQLPLMQVGFIDSICLPIYES 104
++AELV++EFF+QGD ER+ELNI P D+MNREK++++P MQVGFID+ICL +YE+
Sbjct: 264 RIAELVATEFFDQGDRERKELNIEPTDLMNREKKNKIPSMQVGFIDAICLQLYEA 318
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 30/111 (27%)
Query: 139 INNVSPDEYSRIIKVLEEAILSTDLAVYFRQRGSFLSLVKGGSLAWHREADRDLAVYFRQ 198
++ +S +EY +K++++AIL+TDLA+Y ++
Sbjct: 188 LSGLSIEEYKTTLKIIKQAILATDLALYI-----------------------------KR 218
Query: 199 RGSFLSLVKGGSLAWHREADRGLLRGMTMTVCDLAAITKPWHVEKRAFAEL 249
RG F L++ + L M MT CDL+AITKPW +++R AEL
Sbjct: 219 RGEFFELIRKNQFNLEDPHQKELFLAMLMTACDLSAITKPWPIQQR-IAEL 268
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 16 KLHDLPSLRVPSAAKLNLHDFKFDDIHMEDDDT 48
+L L + VPSA L + DF F D + D +T
Sbjct: 26 ELQSLAAAVVPSAQTLKITDFSFSDFELSDLET 58
>pdb|1T9S|A Chain A, Catalytic Domain Of Human Phosphodiesterase 5a In Complex
With Gmp
pdb|1T9S|B Chain B, Catalytic Domain Of Human Phosphodiesterase 5a In Complex
With Gmp
pdb|1TBF|A Chain A, Catalytic Domain Of Human Phosphodiesterase 5a In Complex
With Sildenafil
Length = 347
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 36/55 (65%), Positives = 50/55 (90%)
Query: 50 KVAELVSSEFFEQGDIERQELNITPIDIMNREKEDQLPLMQVGFIDSICLPIYES 104
++AELV++EFF+QGD ER+ELNI P D+MNREK++++P MQVGFID+ICL +YE+
Sbjct: 266 RIAELVATEFFDQGDRERKELNIEPTDLMNREKKNKIPSMQVGFIDAICLQLYEA 320
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 30/111 (27%)
Query: 139 INNVSPDEYSRIIKVLEEAILSTDLAVYFRQRGSFLSLVKGGSLAWHREADRDLAVYFRQ 198
++ +S +EY +K++++AIL+TDLA+Y ++
Sbjct: 190 LSGLSIEEYKTTLKIIKQAILATDLALYI-----------------------------KR 220
Query: 199 RGSFLSLVKGGSLAWHREADRGLLRGMTMTVCDLAAITKPWHVEKRAFAEL 249
RG F L++ + L M MT CDL+AITKPW +++R AEL
Sbjct: 221 RGEFFELIRKNQFNLEDPHQKELFLAMLMTACDLSAITKPWPIQQR-IAEL 270
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 16 KLHDLPSLRVPSAAKLNLHDFKFDDIHMEDDDT 48
+L L + VPSA L + DF F D + D +T
Sbjct: 27 ELQSLAAAVVPSAQTLKITDFSFSDFELSDLET 59
>pdb|2CHM|A Chain A, Crystal Structure Of N2 Substituted Pyrazolo
Pyrimidinones- A Flipped Binding Mode In Pde5
pdb|3TGE|A Chain A, A Novel Series Of Potent And Selective Pde5 Inhibitor1
pdb|3TGG|A Chain A, A Novel Series Of Potent And Selective Pde5 Inhibitor2
Length = 326
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 36/55 (65%), Positives = 50/55 (90%)
Query: 50 KVAELVSSEFFEQGDIERQELNITPIDIMNREKEDQLPLMQVGFIDSICLPIYES 104
++AELV++EFF+QGD ER+ELNI P D+MNREK++++P MQVGFID+ICL +YE+
Sbjct: 245 RIAELVATEFFDQGDRERKELNIEPTDLMNREKKNKIPSMQVGFIDAICLQLYEA 299
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 57/111 (51%), Gaps = 30/111 (27%)
Query: 139 INNVSPDEYSRIIKVLEEAILSTDLAVYFRQRGSFLSLVKGGSLAWHREADRDLAVYFRQ 198
++ +S +EY +K++++AIL+TDLA+Y ++RG F L++ +++L
Sbjct: 169 LSGLSIEEYKTTLKIIKQAILATDLALYIKRRGEFFELIRKNQFNLEDPHEKEL------ 222
Query: 199 RGSFLSLVKGGSLAWHREADRGLLRGMTMTVCDLAAITKPWHVEKRAFAEL 249
FL M MT CDL+AITKPW +++R AEL
Sbjct: 223 ---FL--------------------AMLMTACDLSAITKPWPIQQR-IAEL 249
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 16 KLHDLPSLRVPSAAKLNLHDFKFDDIHMEDDDT 48
+L L + VPSA L + DF F D + D +T
Sbjct: 6 ELQSLAAAVVPSAQTLKITDFSFSDFELSDLET 38
>pdb|3BJC|A Chain A, Crystal Structure Of The Pde5a Catalytic Domain In Complex
With A Novel Inhibitor
Length = 878
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 36/55 (65%), Positives = 50/55 (90%)
Query: 50 KVAELVSSEFFEQGDIERQELNITPIDIMNREKEDQLPLMQVGFIDSICLPIYES 104
++AELV++EFF+QGD ER+ELNI P D+MNREK++++P MQVGFID+ICL +YE+
Sbjct: 780 RIAELVATEFFDQGDRERKELNIEPTDLMNREKKNKIPSMQVGFIDAICLQLYEA 834
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 30/111 (27%)
Query: 139 INNVSPDEYSRIIKVLEEAILSTDLAVYFRQRGSFLSLVKGGSLAWHREADRDLAVYFRQ 198
++ +S +EY +K++++AIL+TDLA+Y ++
Sbjct: 704 LSGLSIEEYKTTLKIIKQAILATDLALYI-----------------------------KR 734
Query: 199 RGSFLSLVKGGSLAWHREADRGLLRGMTMTVCDLAAITKPWHVEKRAFAEL 249
RG F L++ + L M MT CDL+AITKPW +++R AEL
Sbjct: 735 RGEFFELIRKNQFNLEDPHQKELFLAMLMTACDLSAITKPWPIQQR-IAEL 784
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 16 KLHDLPSLRVPSAAKLNLHDFKFDDIHMEDDDT 48
+L L + VPSA L + DF F D + D +T
Sbjct: 542 ELQSLAAAVVPSAQTLKITDFSFSDFELSDLET 574
>pdb|1RKP|A Chain A, Crystal Structure Of Pde5a1-Ibmx
Length = 326
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 36/55 (65%), Positives = 50/55 (90%)
Query: 50 KVAELVSSEFFEQGDIERQELNITPIDIMNREKEDQLPLMQVGFIDSICLPIYES 104
++AELV++EFF+QGD ER+ELNI P D+MNREK++++P MQVGFID+ICL +YE+
Sbjct: 243 RLAELVATEFFDQGDRERKELNIEPTDLMNREKKNKIPSMQVGFIDAICLQLYEA 297
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 30/111 (27%)
Query: 139 INNVSPDEYSRIIKVLEEAILSTDLAVYFRQRGSFLSLVKGGSLAWHREADRDLAVYFRQ 198
++ +S +EY +K++++AIL+TDLA+Y ++
Sbjct: 167 LSGLSIEEYKTTLKIIKQAILATDLALYI-----------------------------KR 197
Query: 199 RGSFLSLVKGGSLAWHREADRGLLRGMTMTVCDLAAITKPWHVEKRAFAEL 249
RG F L++ + L M MT CDL+AITKPW +++R AEL
Sbjct: 198 RGEFFELIRKNQFNLEDPHQKELFLAMLMTACDLSAITKPWPIQQR-LAEL 247
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 16 KLHDLPSLRVPSAAKLNLHDFKFDDIHMEDDDT 48
+L L + VPSA L + DF F D + D +T
Sbjct: 5 ELQSLAAAVVPSAQTLKITDFSFSDFELSDLET 37
>pdb|3JWQ|A Chain A, Crystal Structure Of Chimeric Pde5/pde6 Catalytic Domain
Complexed With Sildenafil
pdb|3JWQ|B Chain B, Crystal Structure Of Chimeric Pde5/pde6 Catalytic Domain
Complexed With Sildenafil
pdb|3JWQ|C Chain C, Crystal Structure Of Chimeric Pde5/pde6 Catalytic Domain
Complexed With Sildenafil
pdb|3JWQ|D Chain D, Crystal Structure Of Chimeric Pde5/pde6 Catalytic Domain
Complexed With Sildenafil
pdb|3JWR|A Chain A, Crystal Structure Of Chimeric Pde5PDE6 CATALYTIC DOMAIN
Complexed With 3-Isobutyl-1-Methylxanthine (Ibmx) And
Pde6 Gamma-Subunit Inhibitory Peptide 70-87.
pdb|3JWR|B Chain B, Crystal Structure Of Chimeric Pde5PDE6 CATALYTIC DOMAIN
Complexed With 3-Isobutyl-1-Methylxanthine (Ibmx) And
Pde6 Gamma-Subunit Inhibitory Peptide 70-87
Length = 330
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 43/55 (78%)
Query: 50 KVAELVSSEFFEQGDIERQELNITPIDIMNREKEDQLPLMQVGFIDSICLPIYES 104
++AELV++EF+EQGD+ER L PI +M+R K D+LP +QVGFID +C +YE+
Sbjct: 247 RIAELVATEFWEQGDLERTVLQQQPIPMMDRNKRDELPKLQVGFIDFVCTQLYEA 301
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 30/111 (27%)
Query: 139 INNVSPDEYSRIIKVLEEAILSTDLAVYFRQRGSFLSLVKGGSLAWHREADRDLAVYFRQ 198
++ +S +EY +K++++AIL+TDLA+Y ++
Sbjct: 171 LSGLSIEEYKTTLKIIKQAILATDLALYI-----------------------------KR 201
Query: 199 RGSFLSLVKGGSLAWHREADRGLLRGMTMTVCDLAAITKPWHVEKRAFAEL 249
RG F L++ + L M MT CDL+AITKPW +++R AEL
Sbjct: 202 RGEFFELIRKNQFNLEDPHQKELFLAMLMTACDLSAITKPWPIQQR-IAEL 251
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 16 KLHDLPSLRVPSAAKLNLHDFKFDDIHMEDDDT 48
+L L + VPSA L + DF F D + D +T
Sbjct: 9 ELQSLAAAVVPSAQTLKITDFSFSDFELSDLET 41
>pdb|1Z1L|A Chain A, The Crystal Structure Of The Phosphodiesterase 2a
Catalytic Domain
Length = 345
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
Query: 48 TLKVAELVSSEFFEQGDIERQELNITPIDIMNREKEDQLPLMQVGFIDSICLPIYESTQ 106
T K+AEL+ EFF QGD+E+ N P+++M+REK +P +Q+ F++ I +PIY+ Q
Sbjct: 245 TRKIAELIYKEFFSQGDLEKAMGN-RPMEMMDREKA-YIPELQISFMEHIAMPIYKLLQ 301
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 57/135 (42%), Gaps = 26/135 (19%)
Query: 131 RGTNNSFQI--NNVSPDEYSRIIKVLEE-------AILSTDLAVYF-----RQRGSFLSL 176
RGTNNSFQ+ +V YS V+E AIL+T F + L L
Sbjct: 127 RGTNNSFQVASKSVLAALYSSEGSVMERHHFAQAIAILNTHGCNIFDHFSRKDYQRMLDL 186
Query: 177 VKGGSLAWHREADRDLAVYFRQRGSFLSLVKGGSLAWHREADRG--LLRGMTMTVCDLAA 234
++ LA DLA + R F L K + + R + LL + MT CDL+
Sbjct: 187 MRDIILA------TDLAHHLR---IFKDLQKMAEVGYDRNNKQHHRLLLCLLMTSCDLSD 237
Query: 235 ITKPWHVEKRAFAEL 249
TK W R AEL
Sbjct: 238 QTKGWKT-TRKIAEL 251
>pdb|3ITM|A Chain A, Catalytic Domain Of Hpde2a
pdb|3ITM|B Chain B, Catalytic Domain Of Hpde2a
pdb|3ITM|C Chain C, Catalytic Domain Of Hpde2a
pdb|3ITM|D Chain D, Catalytic Domain Of Hpde2a
pdb|3ITU|A Chain A, Hpde2a Catalytic Domain Complexed With Ibmx
pdb|3ITU|B Chain B, Hpde2a Catalytic Domain Complexed With Ibmx
pdb|3ITU|C Chain C, Hpde2a Catalytic Domain Complexed With Ibmx
pdb|3ITU|D Chain D, Hpde2a Catalytic Domain Complexed With Ibmx
Length = 345
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
Query: 48 TLKVAELVSSEFFEQGDIERQELNITPIDIMNREKEDQLPLMQVGFIDSICLPIYESTQ 106
T K+AEL+ EFF QGD+E+ N P+++M+REK +P +Q+ F++ I +PIY+ Q
Sbjct: 245 TRKIAELIYKEFFSQGDLEKAMGN-RPMEMMDREKA-YIPELQISFMEHIAMPIYKLLQ 301
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 57/135 (42%), Gaps = 26/135 (19%)
Query: 131 RGTNNSFQI--NNVSPDEYSRIIKVLEE-------AILSTDLAVYF-----RQRGSFLSL 176
RGTNNSFQ+ +V YS V+E AIL+T F + L L
Sbjct: 127 RGTNNSFQVASKSVLAALYSSEGSVMERHHFAQAIAILNTHGCNIFDHFSRKDYQRMLDL 186
Query: 177 VKGGSLAWHREADRDLAVYFRQRGSFLSLVKGGSLAWHREADRG--LLRGMTMTVCDLAA 234
++ LA DLA + R F L K + + R + LL + MT CDL+
Sbjct: 187 MRDIILA------TDLAHHLR---IFKDLQKMAEVGYDRNNKQHHRLLLCLLMTSCDLSD 237
Query: 235 ITKPWHVEKRAFAEL 249
TK W R AEL
Sbjct: 238 QTKGWKT-TRKIAEL 251
>pdb|3IBJ|A Chain A, X-Ray Structure Of Pde2a
pdb|3IBJ|B Chain B, X-Ray Structure Of Pde2a
Length = 691
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
Query: 48 TLKVAELVSSEFFEQGDIERQELNITPIDIMNREKEDQLPLMQVGFIDSICLPIYESTQ 106
T K+AEL+ EFF QGD+E+ N P+++M+REK +P +Q+ F++ I +PIY+ Q
Sbjct: 606 TRKIAELIYKEFFSQGDLEKAMGN-RPMEMMDREKA-YIPELQISFMEHIAMPIYKLLQ 662
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 57/135 (42%), Gaps = 26/135 (19%)
Query: 131 RGTNNSFQI--NNVSPDEYSRIIKVLEE-------AILSTDLAVYF-----RQRGSFLSL 176
RGTNNSFQ+ +V YS V+E AIL+T F + L L
Sbjct: 488 RGTNNSFQVASKSVLAALYSSEGSVMERHHFAQAIAILNTHGCNIFDHFSRKDYQRMLDL 547
Query: 177 VKGGSLAWHREADRDLAVYFRQRGSFLSLVKGGSLAWHREADRG--LLRGMTMTVCDLAA 234
++ LA DLA + R F L K + + R + LL + MT CDL+
Sbjct: 548 MRDIILA------TDLAHHLR---IFKDLQKMAEVGYDRNNKQHHRLLLCLLMTSCDLSD 598
Query: 235 ITKPWHVEKRAFAEL 249
TK W R AEL
Sbjct: 599 QTKGWKT-TRKIAEL 612
>pdb|3LXG|A Chain A, Crystal Structure Of Rat Phosphodiesterase 10a In Complex
Wi Web-3
Length = 308
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 29/105 (27%)
Query: 139 INNVSPDEYSRIIKVLEEAILSTDLAVYFRQRGSFLSLVKGGSLAWHREADRDLAVYFRQ 198
+ +S EY ++++++ +AI++TDLA+Y F
Sbjct: 149 FSTLSSSEYEQVLEIIRKAIIATDLALY-----------------------------FGN 179
Query: 199 RGSFLSLVKGGSLAWHREADRGLLRGMTMTVCDLAAITKPWHVEK 243
R + + GSL H ++ R + G+ MT CDL ++TK W V K
Sbjct: 180 RKQLEEMYQTGSLNLHNQSHRDRVIGLMMTACDLCSVTKLWPVTK 224
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 15/91 (16%)
Query: 28 AAKLNLHDFKFDD----IHMEDDDTLKVAEL----------VSSEFFEQGDIERQELNIT 73
LNLH+ D + M D V +L + +EF+ +GD E ++L I
Sbjct: 189 TGSLNLHNQSHRDRVIGLMMTACDLCSVTKLWPVTKLTANDIYAEFWAEGD-EMKKLGIQ 247
Query: 74 PIDIMNREKEDQLPLMQVGFIDSICLPIYES 104
PI +M+R+K D++P Q+GF +++ +P Y +
Sbjct: 248 PIPMMDRDKRDEVPQGQLGFYNAVAIPCYTT 278
>pdb|3HQW|A Chain A, Discovery Of Novel Inhibitors Of Pde10a
Length = 376
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 29/105 (27%)
Query: 139 INNVSPDEYSRIIKVLEEAILSTDLAVYFRQRGSFLSLVKGGSLAWHREADRDLAVYFRQ 198
+ +S EY ++++++ +AI++TDLA+Y F
Sbjct: 193 FSTLSSSEYEQVLEIIRKAIIATDLALY-----------------------------FGN 223
Query: 199 RGSFLSLVKGGSLAWHREADRGLLRGMTMTVCDLAAITKPWHVEK 243
R + + GSL H ++ R + G+ MT CDL ++TK W V K
Sbjct: 224 RKQLEEMYQTGSLNLHNQSHRDRVIGLMMTACDLCSVTKLWPVTK 268
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 15/91 (16%)
Query: 28 AAKLNLHDFKFDD----IHMEDDDTLKVAEL----------VSSEFFEQGDIERQELNIT 73
LNLH+ D + M D V +L + +EF+ +GD E ++L I
Sbjct: 233 TGSLNLHNQSHRDRVIGLMMTACDLCSVTKLWPVTKLTANDIYAEFWAEGD-EMKKLGIQ 291
Query: 74 PIDIMNREKEDQLPLMQVGFIDSICLPIYES 104
PI +M+R+K D++P Q+GF +++ +P Y +
Sbjct: 292 PIPMMDRDKRDEVPQGQLGFYNAVAIPCYTT 322
>pdb|2O8H|A Chain A, Crystal Structure Of The Catalytic Domain Of Rat
Phosphodiesterase 10a
pdb|2OVV|A Chain A, Crystal Structure Of The Catalytic Domain Of Rat
Phosphodiesterase 10a
pdb|2OVY|A Chain A, Crystal Structure Of The Catalytic Domain Of Rat
Phosphodiesterase 10a
pdb|3QPN|A Chain A, Structure Of Pde10-Inhibitor Complex
pdb|3QPO|A Chain A, Structure Of Pde10-Inhibitor Complex
pdb|3QPP|A Chain A, Structure Of Pde10-Inhibitor Complex
Length = 362
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 29/105 (27%)
Query: 139 INNVSPDEYSRIIKVLEEAILSTDLAVYFRQRGSFLSLVKGGSLAWHREADRDLAVYFRQ 198
+ +S EY ++++++ +AI++TDLA+Y F
Sbjct: 179 FSTLSSSEYEQVLEIIRKAIIATDLALY-----------------------------FGN 209
Query: 199 RGSFLSLVKGGSLAWHREADRGLLRGMTMTVCDLAAITKPWHVEK 243
R + + GSL H ++ R + G+ MT CDL ++TK W V K
Sbjct: 210 RKQLEEMYQTGSLNLHNQSHRDRVIGLMMTACDLCSVTKLWPVTK 254
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 15/91 (16%)
Query: 28 AAKLNLHDFKFDD----IHMEDDDTLKVAEL----------VSSEFFEQGDIERQELNIT 73
LNLH+ D + M D V +L + +EF+ +GD E ++L I
Sbjct: 219 TGSLNLHNQSHRDRVIGLMMTACDLCSVTKLWPVTKLTANDIYAEFWAEGD-EMKKLGIQ 277
Query: 74 PIDIMNREKEDQLPLMQVGFIDSICLPIYES 104
PI +M+R+K D++P Q+GF +++ +P Y +
Sbjct: 278 PIPMMDRDKRDEVPQGQLGFYNAVAIPCYTT 308
>pdb|3HQY|A Chain A, Discovery Of Novel Inhibitors Of Pde10a
pdb|3HQZ|A Chain A, Discovery Of Novel Inhibitors Of Pde10a
pdb|3HR1|A Chain A, Discovery Of Novel Inhibitors Of Pde10a
Length = 380
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 29/105 (27%)
Query: 139 INNVSPDEYSRIIKVLEEAILSTDLAVYFRQRGSFLSLVKGGSLAWHREADRDLAVYFRQ 198
+ +S EY ++++++ +AI++TDLA+Y F
Sbjct: 197 FSTLSSSEYEQVLEIIRKAIIATDLALY-----------------------------FGN 227
Query: 199 RGSFLSLVKGGSLAWHREADRGLLRGMTMTVCDLAAITKPWHVEK 243
R + + GSL H ++ R + G+ MT CDL ++TK W V K
Sbjct: 228 RKQLEEMYQTGSLNLHNQSHRDRVIGLMMTACDLCSVTKLWPVTK 272
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 15/91 (16%)
Query: 28 AAKLNLHDFKFDD----IHMEDDDTLKVAEL----------VSSEFFEQGDIERQELNIT 73
LNLH+ D + M D V +L + +EF+ +GD E ++L I
Sbjct: 237 TGSLNLHNQSHRDRVIGLMMTACDLCSVTKLWPVTKLTANDIYAEFWAEGD-EMKKLGIQ 295
Query: 74 PIDIMNREKEDQLPLMQVGFIDSICLPIYES 104
PI +M+R+K D++P Q+GF +++ +P Y +
Sbjct: 296 PIPMMDRDKRDEVPQGQLGFYNAVAIPCYTT 326
>pdb|2OUR|A Chain A, Crystal Structure Of Pde10a2 Mutant D674a In Complex With
Camp
pdb|2OUR|B Chain B, Crystal Structure Of Pde10a2 Mutant D674a In Complex With
Camp
pdb|2OUS|A Chain A, Crystal Structure Of Pde10a2 Mutant D674a
pdb|2OUS|B Chain B, Crystal Structure Of Pde10a2 Mutant D674a
pdb|2OUU|A Chain A, Crystal Structure Of Pde10a2 Mutant D674a In Complex With
Cgmp
pdb|2OUU|B Chain B, Crystal Structure Of Pde10a2 Mutant D674a In Complex With
Cgmp
Length = 331
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 29/105 (27%)
Query: 139 INNVSPDEYSRIIKVLEEAILSTDLAVYFRQRGSFLSLVKGGSLAWHREADRDLAVYFRQ 198
+ +S EY ++++++ +AI++TDLA+YF R + + GSL + ++ RD +
Sbjct: 166 FSTLSSSEYEQVLEIIRKAIIATDLALYFGNRKQLEEMYQTGSLNLNNQSHRDRVI---- 221
Query: 199 RGSFLSLVKGGSLAWHREADRGLLRGMTMTVCDLAAITKPWHVEK 243
G+ MT C L ++TK W V K
Sbjct: 222 -------------------------GLMMTACALCSVTKLWPVTK 241
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 55 VSSEFFEQGDIERQELNITPIDIMNREKEDQLPLMQVGFIDSICLPIYES 104
+ +EF+ +GD E ++L I PI +M+R+K+D++P Q+GF +++ +P Y +
Sbjct: 247 IYAEFWAEGD-EMKKLGIQPIPMMDRDKKDEVPQGQLGFYNAVAIPCYTT 295
>pdb|4DFF|A Chain A, The Sar Development Of Dihydroimidazoisoquinoline
Derivatives As Phosphodiesterase 10a Inhibitors For The
Treatment Of Schizophrenia
pdb|4DFF|B Chain B, The Sar Development Of Dihydroimidazoisoquinoline
Derivatives As Phosphodiesterase 10a Inhibitors For The
Treatment Of Schizophrenia
Length = 352
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 55 VSSEFFEQGDIERQELNITPIDIMNREKEDQLPLMQVGFIDSICLPIYES 104
+ +EF+ +GD E ++L I PI +M+R+K+D++P Q+GF +++ +P Y +
Sbjct: 255 IYAEFWAEGD-EMKKLGIQPIPMMDRDKKDEVPQGQLGFYNAVAIPCYTT 303
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 29/105 (27%)
Query: 139 INNVSPDEYSRIIKVLEEAILSTDLAVYFRQRGSFLSLVKGGSLAWHREADRDLAVYFRQ 198
+ +S EY ++++++ +AI++TDLA+Y F
Sbjct: 174 FSTLSSSEYEQVLEIIRKAIIATDLALY-----------------------------FGN 204
Query: 199 RGSFLSLVKGGSLAWHREADRGLLRGMTMTVCDLAAITKPWHVEK 243
R + + GSL + ++ R + G+ MT CDL ++TK W V K
Sbjct: 205 RKQLEEMYQTGSLNLNNQSHRDRVIGLMMTACDLCSVTKLWPVTK 249
>pdb|4DDL|A Chain A, Pde10a Crystal Structure Complexed With Novel Inhibitor
pdb|4DDL|B Chain B, Pde10a Crystal Structure Complexed With Novel Inhibitor
Length = 338
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 55 VSSEFFEQGDIERQELNITPIDIMNREKEDQLPLMQVGFIDSICLPIYES 104
+ +EF+ +GD E ++L I PI +M+R+K+D++P Q+GF +++ +P Y +
Sbjct: 241 IYAEFWAEGD-EMKKLGIQPIPMMDRDKKDEVPQGQLGFYNAVAIPCYTT 289
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 29/105 (27%)
Query: 139 INNVSPDEYSRIIKVLEEAILSTDLAVYFRQRGSFLSLVKGGSLAWHREADRDLAVYFRQ 198
+ +S EY ++++++ +AI++TDLA+Y F
Sbjct: 160 FSTLSSSEYEQVLEIIRKAIIATDLALY-----------------------------FGN 190
Query: 199 RGSFLSLVKGGSLAWHREADRGLLRGMTMTVCDLAAITKPWHVEK 243
R + + GSL + ++ R + G+ MT CDL ++TK W V K
Sbjct: 191 RKQLEEMYQTGSLNLNNQSHRDRVIGLMMTACDLCSVTKLWPVTK 235
>pdb|4AEL|A Chain A, Pde10a In Complex With The Inhibitor Az5
pdb|4AEL|B Chain B, Pde10a In Complex With The Inhibitor Az5
Length = 344
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 55 VSSEFFEQGDIERQELNITPIDIMNREKEDQLPLMQVGFIDSICLPIYES 104
+ +EF+ +GD E ++L I PI +M+R+K+D++P Q+GF +++ +P Y +
Sbjct: 247 IYAEFWAEGD-EMKKLGIQPIPMMDRDKKDEVPQGQLGFYNAVAIPCYTT 295
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 29/105 (27%)
Query: 139 INNVSPDEYSRIIKVLEEAILSTDLAVYFRQRGSFLSLVKGGSLAWHREADRDLAVYFRQ 198
+ +S EY ++++++ +AI++TDLA+Y F
Sbjct: 166 FSTLSSSEYEQVLEIIRKAIIATDLALY-----------------------------FGN 196
Query: 199 RGSFLSLVKGGSLAWHREADRGLLRGMTMTVCDLAAITKPWHVEK 243
R + + GSL + ++ R + G+ MT CDL ++TK W V K
Sbjct: 197 RKQLEEMYQTGSLNLNNQSHRDRVIGLMMTACDLCSVTKLWPVTK 241
>pdb|3SN7|A Chain A, Highly Potent, Selective, And Orally Active
Phosphodiestarase 10a Inhibitors
pdb|3SN7|B Chain B, Highly Potent, Selective, And Orally Active
Phosphodiestarase 10a Inhibitors
pdb|3SNI|A Chain A, Highly Potent, Selective, And Orally Active
Phosphodiestarase 10a Inhibitors
pdb|3SNI|B Chain B, Highly Potent, Selective, And Orally Active
Phosphodiestarase 10a Inhibitors
pdb|3SNL|A Chain A, Highly Potent, Selective, And Orally Active
Phosphodiestarase 10a Inhibitors
pdb|3SNL|B Chain B, Highly Potent, Selective, And Orally Active
Phosphodiestarase 10a Inhibitors
pdb|4FCB|A Chain A, Potent And Selective Phosphodiesterase 10a Inhibitors
pdb|4FCB|B Chain B, Potent And Selective Phosphodiesterase 10a Inhibitors
pdb|4FCD|A Chain A, Potent And Selective Phosphodiesterase 10a Inhibitors
pdb|4FCD|B Chain B, Potent And Selective Phosphodiesterase 10a Inhibitors
Length = 345
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 55 VSSEFFEQGDIERQELNITPIDIMNREKEDQLPLMQVGFIDSICLPIYES 104
+ +EF+ +GD E ++L I PI +M+R+K+D++P Q+GF +++ +P Y +
Sbjct: 248 IYAEFWAEGD-EMKKLGIQPIPMMDRDKKDEVPQGQLGFYNAVAIPCYTT 296
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 29/105 (27%)
Query: 139 INNVSPDEYSRIIKVLEEAILSTDLAVYFRQRGSFLSLVKGGSLAWHREADRDLAVYFRQ 198
+ +S EY ++++++ +AI++TDLA+Y F
Sbjct: 167 FSTLSSSEYEQVLEIIRKAIIATDLALY-----------------------------FGN 197
Query: 199 RGSFLSLVKGGSLAWHREADRGLLRGMTMTVCDLAAITKPWHVEK 243
R + + GSL + ++ R + G+ MT CDL ++TK W V K
Sbjct: 198 RKQLEEMYQTGSLNLNNQSHRDRVIGLMMTACDLCSVTKLWPVTK 242
>pdb|2WEY|A Chain A, Human Pde-Papaverine Complex Obtained By Ligand Soaking Of
Cross-Linked Protein Crystals
pdb|2WEY|B Chain B, Human Pde-Papaverine Complex Obtained By Ligand Soaking Of
Cross-Linked Protein Crystals
Length = 343
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 55 VSSEFFEQGDIERQELNITPIDIMNREKEDQLPLMQVGFIDSICLPIYES 104
+ +EF+ +GD E ++L I PI +M+R+K+D++P Q+GF +++ +P Y +
Sbjct: 246 IYAEFWAEGD-EMKKLGIQPIPMMDRDKKDEVPQGQLGFYNAVAIPCYTT 294
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 29/105 (27%)
Query: 139 INNVSPDEYSRIIKVLEEAILSTDLAVYFRQRGSFLSLVKGGSLAWHREADRDLAVYFRQ 198
+ +S EY ++++++ +AI++TDLA+Y F
Sbjct: 165 FSTLSSSEYEQVLEIIRKAIIATDLALY-----------------------------FGN 195
Query: 199 RGSFLSLVKGGSLAWHREADRGLLRGMTMTVCDLAAITKPWHVEK 243
R + + GSL + ++ R + G+ MT CDL ++TK W V K
Sbjct: 196 RKQLEEMYQTGSLNLNNQSHRDRVIGLMMTACDLCSVTKLWPVTK 240
>pdb|4HEU|A Chain A, Crystal Structure Of Pde10a With A Biaryl Ether Inhibitor
((1-(3-(4-
((1h-Benzo[d]imidazol-2-Yl)amino)phenoxy)pyridin-2-
Yl)piperidin-4- Yl)methanol)
pdb|4HEU|B Chain B, Crystal Structure Of Pde10a With A Biaryl Ether Inhibitor
((1-(3-(4-
((1h-Benzo[d]imidazol-2-Yl)amino)phenoxy)pyridin-2-
Yl)piperidin-4- Yl)methanol)
pdb|4HF4|A Chain A, Crystal Structure Of Pde10a With A Biaryl Ether Inhibitor
(1-(1-(3-(4-
(Benzo[d]thiazol-2-Ylamino)phenoxy)pyrazin-2-
Yl)piperidin-4-Yl) Ethanol)
pdb|4HF4|B Chain B, Crystal Structure Of Pde10a With A Biaryl Ether Inhibitor
(1-(1-(3-(4-
(Benzo[d]thiazol-2-Ylamino)phenoxy)pyrazin-2-
Yl)piperidin-4-Yl) Ethanol)
Length = 318
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 29/105 (27%)
Query: 139 INNVSPDEYSRIIKVLEEAILSTDLAVYFRQRGSFLSLVKGGSLAWHREADRDLAVYFRQ 198
+ +S EY ++++++ +AI++TDLA+Y F
Sbjct: 160 FSTLSSSEYEQVLEIIRKAIIATDLALY-----------------------------FGN 190
Query: 199 RGSFLSLVKGGSLAWHREADRGLLRGMTMTVCDLAAITKPWHVEK 243
R + + GSL + ++ R + G+ MT CDL ++TK W V K
Sbjct: 191 RKQLEEMYQTGSLNLNNQSHRDRVIGLMMTACDLCSVTKLWPVTK 235
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 55 VSSEFFEQGDIERQELNITPIDIMNREKEDQLPLMQVGFIDSICLPIYES 104
+ +EF+ +GD E ++L I PI +M+R+K+D++P Q+GF +++ +P Y +
Sbjct: 241 IYAEFWAEGD-EMKKLGIQPIPMMDRDKKDEVPQGQLGFYNAVAIPCYTT 289
>pdb|3UI7|A Chain A, Discovery Of Orally Active Pyrazoloquinoline As A Potent
Pde10 Inhibitor For The Management Of Schizophrenia
pdb|3UI7|B Chain B, Discovery Of Orally Active Pyrazoloquinoline As A Potent
Pde10 Inhibitor For The Management Of Schizophrenia
Length = 333
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 29/105 (27%)
Query: 139 INNVSPDEYSRIIKVLEEAILSTDLAVYFRQRGSFLSLVKGGSLAWHREADRDLAVYFRQ 198
+ +S EY ++++++ +AI++TDLA+Y F
Sbjct: 174 FSTLSSSEYEQVLEIIRKAIIATDLALY-----------------------------FGN 204
Query: 199 RGSFLSLVKGGSLAWHREADRGLLRGMTMTVCDLAAITKPWHVEK 243
R + + GSL + ++ R + G+ MT CDL ++TK W V K
Sbjct: 205 RKQLEEMYQTGSLNLNNQSHRDRVIGLMMTACDLCSVTKLWPVTK 249
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 55 VSSEFFEQGDIERQELNITPIDIMNREKEDQLPLMQVGFIDSICLPIYES 104
+ +EF+ +GD E ++L I PI +M+R+K+D++P Q+GF +++ +P Y +
Sbjct: 255 IYAEFWAEGD-EMKKLGIQPIPMMDRDKKDEVPQGQLGFYNAVAIPCYTT 303
>pdb|3UUO|A Chain A, The Discovery Of Potent, Selectivity, And Orally
Bioavailable Pyrozoloquinolines As Pde10 Inhibitors For
The Treatment Of Schizophrenia
pdb|3UUO|B Chain B, The Discovery Of Potent, Selectivity, And Orally
Bioavailable Pyrozoloquinolines As Pde10 Inhibitors For
The Treatment Of Schizophrenia
Length = 337
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 29/105 (27%)
Query: 139 INNVSPDEYSRIIKVLEEAILSTDLAVYFRQRGSFLSLVKGGSLAWHREADRDLAVYFRQ 198
+ +S EY ++++++ +AI++TDLA+Y F
Sbjct: 178 FSTLSSSEYEQVLEIIRKAIIATDLALY-----------------------------FGN 208
Query: 199 RGSFLSLVKGGSLAWHREADRGLLRGMTMTVCDLAAITKPWHVEK 243
R + + GSL + ++ R + G+ MT CDL ++TK W V K
Sbjct: 209 RKQLEEMYQTGSLNLNNQSHRDRVIGLMMTACDLCSVTKLWPVTK 253
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 55 VSSEFFEQGDIERQELNITPIDIMNREKEDQLPLMQVGFIDSICLPIYES 104
+ +EF+ +GD E ++L I PI +M+R+K+D++P Q+GF +++ +P Y +
Sbjct: 259 IYAEFWAEGD-EMKKLGIQPIPMMDRDKKDEVPQGQLGFYNAVAIPCYTT 307
>pdb|2OUV|A Chain A, Crystal Structure Of Pde10a2 Mutant Of D564n
pdb|2OUV|B Chain B, Crystal Structure Of Pde10a2 Mutant Of D564n
pdb|2OUY|A Chain A, Crystal Structure Of Pde10a2 Mutant D564a In Complex With
Camp.
pdb|2OUY|B Chain B, Crystal Structure Of Pde10a2 Mutant D564a In Complex With
Camp
Length = 331
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 55 VSSEFFEQGDIERQELNITPIDIMNREKEDQLPLMQVGFIDSICLPIYES 104
+ +EF+ +GD E ++L I PI +M+R+K+D++P Q+GF +++ +P Y +
Sbjct: 247 IYAEFWAEGD-EMKKLGIQPIPMMDRDKKDEVPQGQLGFYNAVAIPCYTT 295
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 29/105 (27%)
Query: 139 INNVSPDEYSRIIKVLEEAILSTDLAVYFRQRGSFLSLVKGGSLAWHREADRDLAVYFRQ 198
+ +S EY ++++++ +AI++TDLA+Y F
Sbjct: 166 FSTLSSSEYEQVLEIIRKAIIATDLALY-----------------------------FGN 196
Query: 199 RGSFLSLVKGGSLAWHREADRGLLRGMTMTVCDLAAITKPWHVEK 243
R + + GSL + ++ R + G+ MT CDL ++TK W V K
Sbjct: 197 RKQLEEMYQTGSLNLNNQSHRDRVIGLMMTACDLCSVTKLWPVTK 241
>pdb|2OUN|A Chain A, Crystal Structure Of Pde10a2 In Complex With Amp
pdb|2OUN|B Chain B, Crystal Structure Of Pde10a2 In Complex With Amp
pdb|2OUP|A Chain A, Crystal Structure Of Pde10a
pdb|2OUP|B Chain B, Crystal Structure Of Pde10a
pdb|2OUQ|A Chain A, Crystal Structure Of Pde10a2 In Complex With Gmp
pdb|2OUQ|B Chain B, Crystal Structure Of Pde10a2 In Complex With Gmp
Length = 331
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 55 VSSEFFEQGDIERQELNITPIDIMNREKEDQLPLMQVGFIDSICLPIYES 104
+ +EF+ +GD E ++L I PI +M+R+K+D++P Q+GF +++ +P Y +
Sbjct: 247 IYAEFWAEGD-EMKKLGIQPIPMMDRDKKDEVPQGQLGFYNAVAIPCYTT 295
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 29/105 (27%)
Query: 139 INNVSPDEYSRIIKVLEEAILSTDLAVYFRQRGSFLSLVKGGSLAWHREADRDLAVYFRQ 198
+ +S EY ++++++ +AI++TDLA+Y F
Sbjct: 166 FSTLSSSEYEQVLEIIRKAIIATDLALY-----------------------------FGN 196
Query: 199 RGSFLSLVKGGSLAWHREADRGLLRGMTMTVCDLAAITKPWHVEK 243
R + + GSL + ++ R + G+ MT CDL ++TK W V K
Sbjct: 197 RKQLEEMYQTGSLNLNNQSHRDRVIGLMMTACDLCSVTKLWPVTK 241
>pdb|2Y0J|A Chain A, Triazoloquinazolines As A Novel Class Of Phosphodiesterase
10a (Pde10a) Inhibitors, Part 2, Lead-Optimisation.
pdb|2Y0J|B Chain B, Triazoloquinazolines As A Novel Class Of Phosphodiesterase
10a (Pde10a) Inhibitors, Part 2, Lead-Optimisation
Length = 340
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 55 VSSEFFEQGDIERQELNITPIDIMNREKEDQLPLMQVGFIDSICLPIYES 104
+ +EF+ +GD E ++L I PI +M+R+K+D++P Q+GF +++ +P Y +
Sbjct: 251 IYAEFWAEGD-EMKKLGIQPIPMMDRDKKDEVPQGQLGFYNAVAIPCYTT 299
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 29/105 (27%)
Query: 139 INNVSPDEYSRIIKVLEEAILSTDLAVYFRQRGSFLSLVKGGSLAWHREADRDLAVYFRQ 198
+ +S EY ++++++ +AI++TDLA+Y F
Sbjct: 170 FSTLSSSEYEQVLEIIRKAIIATDLALY-----------------------------FGN 200
Query: 199 RGSFLSLVKGGSLAWHREADRGLLRGMTMTVCDLAAITKPWHVEK 243
R + + GSL + ++ R + G+ MT CDL ++TK W V K
Sbjct: 201 RKQLEEMYQTGSLNLNNQSHRDRVIGLMMTACDLCSVTKLWPVTK 245
>pdb|2QYM|A Chain A, Crystal Structure Of Unliganded Pde4c2
Length = 358
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Query: 55 VSSEFFEQGDIERQE-LNITPIDIMNREKEDQLPLMQVGFIDSICLPIYES 104
+ +EFF+QGD ER+ L+I+P M + + QVGFID I P++E+
Sbjct: 259 IMAEFFQQGDRERESGLDISP---MCDKHTASVEKSQVGFIDYIAHPLWET 306
>pdb|2R8Q|A Chain A, Structure Of Lmjpdeb1 In Complex With Ibmx
pdb|2R8Q|B Chain B, Structure Of Lmjpdeb1 In Complex With Ibmx
Length = 359
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 52 AELVSSEFFEQGDIERQELNITPIDIMNREKEDQLPLMQVGFIDSI 97
A V+ EF+ QGD+E+++ + + + +R K ++L Q+GFID +
Sbjct: 269 AMAVTEEFYRQGDMEKEK-GVEVLPMFDRSKNNELARGQIGFIDFV 313
>pdb|3G3N|A Chain A, Pde7a Catalytic Domain In Complex With 3-(2,6-
Difluorophenyl)-2-(Methylthio)quinazolin-4(3h)-One
Length = 318
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 36/57 (63%), Gaps = 6/57 (10%)
Query: 52 AELVSSEFFEQGDIERQ-ELNITPIDIMNREKEDQLPLMQVGFIDSICLPIYESTQW 107
+E V+ EFF QGDIE++ L ++P + +R E + +Q+GF+ + P++ T+W
Sbjct: 239 SEKVTEEFFHQGDIEKKYHLGVSP--LCDRHTES-IANIQIGFMTYLVEPLF--TEW 290
>pdb|1ZKL|A Chain A, Multiple Determinants For Inhibitor Selectivity Of Cyclic
Nucleotide Phosphodiesterases
Length = 353
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 36/57 (63%), Gaps = 6/57 (10%)
Query: 52 AELVSSEFFEQGDIERQ-ELNITPIDIMNREKEDQLPLMQVGFIDSICLPIYESTQW 107
+E V+ EFF QGDIE++ L ++P + +R E + +Q+GF+ + P++ T+W
Sbjct: 248 SEKVTEEFFHQGDIEKKYHLGVSP--LCDRHTES-IANIQIGFMTYLVEPLF--TEW 299
>pdb|3TVX|A Chain A, The Structure Of Pde4a With Pentoxifylline At 2.84a
Resolution
pdb|3TVX|B Chain B, The Structure Of Pde4a With Pentoxifylline At 2.84a
Resolution
Length = 338
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Query: 55 VSSEFFEQGDIERQE-LNITPIDIMNREKEDQLPLMQVGFIDSICLPIYES 104
+ +EFF+QGD ER+ + I+P M + + QVGFID I P++E+
Sbjct: 264 IMAEFFQQGDRERERGMEISP---MCDKHTASVEKSQVGFIDYIVHPLWET 311
>pdb|3I8V|A Chain A, Crystal Structure Of Human Pde4a With
4-(3-butoxy-4-methoxyphenyl) Methyl-2-imidazolidone
pdb|3I8V|B Chain B, Crystal Structure Of Human Pde4a With
4-(3-butoxy-4-methoxyphenyl) Methyl-2-imidazolidone
Length = 354
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Query: 55 VSSEFFEQGDIERQE-LNITPIDIMNREKEDQLPLMQVGFIDSICLPIYES 104
+ +EFF+QGD ER+ + I+P M + + QVGFID I P++E+
Sbjct: 280 IMAEFFQQGDRERERGMEISP---MCDKHTASVEKSQVGFIDYIVHPLWET 327
>pdb|2QYK|A Chain A, Crystal Structure Of Pde4a10 In Complex With Inhibitor Npv
pdb|2QYK|B Chain B, Crystal Structure Of Pde4a10 In Complex With Inhibitor Npv
Length = 335
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Query: 55 VSSEFFEQGDIERQE-LNITPIDIMNREKEDQLPLMQVGFIDSICLPIYES 104
+ +EFF+QGD ER+ + I+P M + + QVGFID I P++E+
Sbjct: 261 IMAEFFQQGDRERERGMEISP---MCDKHTASVEKSQVGFIDYIVHPLWET 308
>pdb|1XM6|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With (R)- Mesopram
pdb|1XM6|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With (R)- Mesopram
pdb|1XN0|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With (R,S)- Rolipram
pdb|1XN0|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With (R,S)- Rolipram
pdb|1XOS|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Sildenafil
Length = 398
Score = 35.4 bits (80), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 55 VSSEFFEQGDIERQE-LNITPIDIMNREKEDQLPLMQVGFIDSICLPIYES 104
+ EFF+QGD ER+ + I+P M + + QVGFID I P++E+
Sbjct: 280 IMEEFFQQGDKERERGMEISP---MXDKHTASVEKSQVGFIDYIVHPLWET 327
>pdb|3O0J|A Chain A, Pde4b In Complex With Ligand An2898
Length = 323
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 55 VSSEFFEQGDIERQE-LNITPIDIMNREKEDQLPLMQVGFIDSICLPIYES 104
+ EFF+QGD ER+ + I+P M + + QVGFID I P++E+
Sbjct: 249 IMEEFFQQGDKERERGMEISP---MCDKHTASVEKSQVGFIDYIVHPLWET 296
>pdb|1XM4|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Piclamilast
pdb|1XMU|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Roflumilast
pdb|1XMY|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With (R)- Rolipram
Length = 398
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 55 VSSEFFEQGDIERQE-LNITPIDIMNREKEDQLPLMQVGFIDSICLPIYES 104
+ EFF+QGD ER+ + I+P M + + QVGFID I P++E+
Sbjct: 280 IMEEFFQQGDKERERGMEISP---MXDKHTASVEKSQVGFIDYIVHPLWET 327
>pdb|2QYL|A Chain A, Crystal Structure Of Pde4b2b In Complex With Inhibitor Npv
Length = 337
Score = 35.0 bits (79), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 55 VSSEFFEQGDIERQE-LNITPIDIMNREKEDQLPLMQVGFIDSICLPIYES 104
+ EFF+QGD ER+ + I+P M + + QVGFID I P++E+
Sbjct: 260 IMEEFFQQGDKERERGMEISP---MCDKHTASVEKSQVGFIDYIVHPLWET 307
>pdb|3LY2|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
Wi Coumarin-Based Inhibitor
pdb|3LY2|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
Wi Coumarin-Based Inhibitor
pdb|3LY2|C Chain C, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
Wi Coumarin-Based Inhibitor
pdb|3LY2|D Chain D, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
Wi Coumarin-Based Inhibitor
pdb|3LY2|E Chain E, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
Wi Coumarin-Based Inhibitor
pdb|3LY2|F Chain F, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
Wi Coumarin-Based Inhibitor
pdb|3LY2|G Chain G, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
Wi Coumarin-Based Inhibitor
pdb|3LY2|H Chain H, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
Wi Coumarin-Based Inhibitor
Length = 357
Score = 35.0 bits (79), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 55 VSSEFFEQGDIERQE-LNITPIDIMNREKEDQLPLMQVGFIDSICLPIYES 104
+ EFF+QGD ER+ + I+P M + + QVGFID I P++E+
Sbjct: 280 IMEEFFQQGDKERERGMEISP---MCDKHTASVEKSQVGFIDYIVHPLWET 327
>pdb|3G45|A Chain A, Crystal Structure Of Human Phosphodiesterase 4b With
Regulatory Domain And D155988
pdb|3G45|B Chain B, Crystal Structure Of Human Phosphodiesterase 4b With
Regulatory Domain And D155988
Length = 421
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 55 VSSEFFEQGDIERQE-LNITPIDIMNREKEDQLPLMQVGFIDSICLPIYES 104
+ EFF+QGD ER+ + I+P M + + QVGFID I P++E+
Sbjct: 338 IMEEFFQQGDKERERGMEISP---MCDKHTASVEKSQVGFIDYIVHPLWET 385
>pdb|3D3P|A Chain A, Crystal Structure Of Pde4b Catalytic Domain In Complex
With A Pyrazolopyridine Inhibitor
pdb|3FRG|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b2b In
Complex With A Quinoline Inhibitor
pdb|3GWT|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b2b In
Complex With A Quinoline Inhibitor
pdb|3O56|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b2b In
Complex With A 5- Heterocycle Pyrazolopyridine Inhibitor
pdb|3O57|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b2b In
Complex With A 5- Heterocycle Pyrazolopyridine Inhibitor
Length = 353
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 55 VSSEFFEQGDIERQE-LNITPIDIMNREKEDQLPLMQVGFIDSICLPIYES 104
+ EFF+QGD ER+ + I+P M + + QVGFID I P++E+
Sbjct: 260 IMEEFFQQGDKERERGMEISP---MCDKHTASVEKSQVGFIDYIVHPLWET 307
>pdb|3HMV|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b2b In
Complex Tetrahydrobenzothiophene Inhibitor
pdb|3HMV|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b2b In
Complex Tetrahydrobenzothiophene Inhibitor
Length = 378
Score = 34.7 bits (78), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 55 VSSEFFEQGDIERQE-LNITPIDIMNREKEDQLPLMQVGFIDSICLPIYES 104
+ EFF+QGD ER+ + I+P M + + QVGFID I P++E+
Sbjct: 260 IMEEFFQQGDKERERGMEISP---MCDKHTASVEKSQVGFIDYIVHPLWET 307
>pdb|1F0J|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b2b
pdb|1F0J|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b2b
Length = 377
Score = 34.7 bits (78), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 55 VSSEFFEQGDIERQE-LNITPIDIMNREKEDQLPLMQVGFIDSICLPIYES 104
+ EFF+QGD ER+ + I+P M + + QVGFID I P++E+
Sbjct: 259 IMEEFFQQGDKERERGMEISP---MCDKHTASVEKSQVGFIDYIVHPLWET 306
>pdb|1RO6|A Chain A, Crystal Structure Of Pde4b2b Complexed With Rolipram (r &
S)
pdb|1RO6|B Chain B, Crystal Structure Of Pde4b2b Complexed With Rolipram (r &
S)
pdb|1RO9|A Chain A, Crystal Structures Of The Catalytic Domain Of
Phosphodiesterase 4b2b Complexed With 8-Br-Amp
pdb|1RO9|B Chain B, Crystal Structures Of The Catalytic Domain Of
Phosphodiesterase 4b2b Complexed With 8-Br-Amp
pdb|1ROR|A Chain A, Crystal Structures Of The Catalytic Domain Of
Phosphodiesterase 4b2b Complexed With Amp
pdb|1ROR|B Chain B, Crystal Structures Of The Catalytic Domain Of
Phosphodiesterase 4b2b Complexed With Amp
Length = 378
Score = 34.7 bits (78), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 55 VSSEFFEQGDIERQE-LNITPIDIMNREKEDQLPLMQVGFIDSICLPIYES 104
+ EFF+QGD ER+ + I+P M + + QVGFID I P++E+
Sbjct: 260 IMEEFFQQGDKERERGMEISP---MCDKHTASVEKSQVGFIDYIVHPLWET 307
>pdb|1XLZ|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Filaminast
pdb|1XLZ|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Filaminast
pdb|1XM4|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Piclamilast
pdb|1XMU|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Roflumilast
pdb|1XMY|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With (R)- Rolipram
Length = 398
Score = 34.7 bits (78), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 55 VSSEFFEQGDIERQE-LNITPIDIMNREKEDQLPLMQVGFIDSICLPIYES 104
+ EFF+QGD ER+ + I+P M + + QVGFID I P++E+
Sbjct: 280 IMEEFFQQGDKERERGMEISP---MCDKHTASVEKSQVGFIDYIVHPLWET 327
>pdb|1TB5|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Amp
pdb|1TB5|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Amp
Length = 381
Score = 34.7 bits (78), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 55 VSSEFFEQGDIERQE-LNITPIDIMNREKEDQLPLMQVGFIDSICLPIYES 104
+ EFF+QGD ER+ + I+P M + + QVGFID I P++E+
Sbjct: 263 IMEEFFQQGDKERERGMEISP---MCDKHTASVEKSQVGFIDYIVHPLWET 310
>pdb|1XLX|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Cilomilast
pdb|1XLX|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Cilomilast
pdb|1XOT|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Vardenafil
pdb|1XOT|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Vardenafil
pdb|1Y2H|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With 1-(2-
Chloro-Phenyl)-3,5-Dimethyl-1h-Pyrazole-4-Carboxylic
Acid Ethyl Ester
pdb|1Y2H|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With 1-(2-
Chloro-Phenyl)-3,5-Dimethyl-1h-Pyrazole-4-Carboxylic
Acid Ethyl Ester
pdb|1Y2J|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With 3,5-
Dimethyl-1-(3-Nitro-Phenyl)-1h-Pyrazole-4-Carboxylic
Acid Ethyl Ester
pdb|1Y2J|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With 3,5-
Dimethyl-1-(3-Nitro-Phenyl)-1h-Pyrazole-4-Carboxylic
Acid Ethyl Ester
Length = 398
Score = 34.7 bits (78), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 55 VSSEFFEQGDIERQE-LNITPIDIMNREKEDQLPLMQVGFIDSICLPIYES 104
+ EFF+QGD ER+ + I+P M + + QVGFID I P++E+
Sbjct: 280 IMEEFFQQGDKERERGMEISP---MCDKHTASVEKSQVGFIDYIVHPLWET 327
>pdb|3KKT|A Chain A, Crystal Structure Of Human Pde4b With 5-[3-[(1s,2s,4r)-
Bicyclo[2.2.1]hept-2-Yloxy]-4-Methoxyp
Henyl]tetrahydro-2(1h)- Pyrimidinone Reveals Ordering Of
The C-Terminal Helix Residues 502- 509.
pdb|3KKT|B Chain B, Crystal Structure Of Human Pde4b With 5-[3-[(1s,2s,4r)-
Bicyclo[2.2.1]hept-2-Yloxy]-4-Methoxyp
Henyl]tetrahydro-2(1h)- Pyrimidinone Reveals Ordering Of
The C-Terminal Helix Residues 502- 509
Length = 398
Score = 34.7 bits (78), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 55 VSSEFFEQGDIERQE-LNITPIDIMNREKEDQLPLMQVGFIDSICLPIYES 104
+ EFF+QGD ER+ + I+P M + + QVGFID I P++E+
Sbjct: 280 IMEEFFQQGDKERERGMEISP---MCDKHTASVEKSQVGFIDYIVHPLWET 327
>pdb|1TB7|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Amp
pdb|1TB7|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Amp
pdb|1TBB|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Rolipram
pdb|1TBB|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Rolipram
Length = 332
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 55 VSSEFFEQGDIERQE-LNITPI-DIMNREKEDQLPLMQVGFIDSICLPIYES 104
+ EFF QGD ER+ + I+P+ D N E QVGFID I P++E+
Sbjct: 255 IMEEFFRQGDRERERGMEISPMCDKHNASVEKS----QVGFIDYIVHPLWET 302
>pdb|1XOM|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Cilomilast
pdb|1XOM|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Cilomilast
pdb|1XON|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Piclamilast
pdb|1XON|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Piclamilast
pdb|1XOQ|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Roflumilast
pdb|1XOQ|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Roflumilast
pdb|1XOR|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Zardaverine
pdb|1XOR|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Zardaverine
pdb|1Y2B|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With 3,5- Dimethyl-1h-Pyrazole-4-Carboxylic Acid Ethyl
Ester
pdb|1Y2B|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With 3,5- Dimethyl-1h-Pyrazole-4-Carboxylic Acid Ethyl
Ester
pdb|1Y2C|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With 3,5- Dimethyl-1-Phenyl-1h-Pyrazole-4-Carboxylic
Acid Ethyl Ester
pdb|1Y2C|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With 3,5- Dimethyl-1-Phenyl-1h-Pyrazole-4-Carboxylic
Acid Ethyl Ester
pdb|1Y2D|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With 1-(4-
Methoxy-Phenyl)-3,5-Dimethyl-1h-Pyrazole-4-Carboxylic
Acid Ethyl Ester
pdb|1Y2D|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With 1-(4-
Methoxy-Phenyl)-3,5-Dimethyl-1h-Pyrazole-4-Carboxylic
Acid Ethyl Ester
pdb|1Y2E|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With 1-(4-
Amino-Phenyl)-3,5-Dimethyl-1h-Pyrazole-4-Carboxylic Acid
Ethyl Ester
pdb|1Y2E|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With 1-(4-
Amino-Phenyl)-3,5-Dimethyl-1h-Pyrazole-4-Carboxylic Acid
Ethyl Ester
pdb|1Y2K|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With 3,5-
Dimethyl-1-(3-Nitro-Phenyl)-1h-Pyrazole-4-Carboxylic
Acid Ethyl Ester
pdb|1Y2K|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With 3,5-
Dimethyl-1-(3-Nitro-Phenyl)-1h-Pyrazole-4-Carboxylic
Acid Ethyl Ester
pdb|3IAK|A Chain A, Crystal Structure Of Human Phosphodiesterase 4d (Pde4d)
With Papaverine.
pdb|3K4S|A Chain A, The Structure Of The Catalytic Domain Of Human Pde4d With
4- (3-Butoxy-4-Methoxyphenyl)methyl-2-Imidazolidone
Length = 349
Score = 34.3 bits (77), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 55 VSSEFFEQGDIERQE-LNITPI-DIMNREKEDQLPLMQVGFIDSICLPIYES 104
+ EFF QGD ER+ + I+P+ D N E QVGFID I P++E+
Sbjct: 272 IMEEFFRQGDRERERGMEISPMCDKHNASVEKS----QVGFIDYIVHPLWET 319
>pdb|2PW3|A Chain A, Structure Of The Pde4d-Camp Complex
pdb|2PW3|B Chain B, Structure Of The Pde4d-Camp Complex
Length = 327
Score = 34.3 bits (77), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 55 VSSEFFEQGDIERQE-LNITPI-DIMNREKEDQLPLMQVGFIDSICLPIYES 104
+ EFF QGD ER+ + I+P+ D N E QVGFID I P++E+
Sbjct: 251 IMEEFFRQGDRERERGMEISPMCDKHNASVEKS----QVGFIDYIVHPLWET 298
>pdb|3G4G|A Chain A, Crystal Structure Of Human Phosphodiesterase 4d With
Regulatory Domain And D155871
pdb|3G4G|B Chain B, Crystal Structure Of Human Phosphodiesterase 4d With
Regulatory Domain And D155871
pdb|3G4G|C Chain C, Crystal Structure Of Human Phosphodiesterase 4d With
Regulatory Domain And D155871
pdb|3G4G|D Chain D, Crystal Structure Of Human Phosphodiesterase 4d With
Regulatory Domain And D155871
Length = 421
Score = 34.3 bits (77), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 55 VSSEFFEQGDIERQE-LNITPI-DIMNREKEDQLPLMQVGFIDSICLPIYES 104
+ EFF QGD ER+ + I+P+ D N E QVGFID I P++E+
Sbjct: 338 IMEEFFRQGDRERERGMEISPMCDKHNASVEKS----QVGFIDYIVHPLWET 385
>pdb|2QYN|A Chain A, Crystal Structure Of Pde4d2 In Complex With Inhibitor Npv
pdb|2QYN|B Chain B, Crystal Structure Of Pde4d2 In Complex With Inhibitor Npv
Length = 328
Score = 34.3 bits (77), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 55 VSSEFFEQGDIERQE-LNITPI-DIMNREKEDQLPLMQVGFIDSICLPIYES 104
+ EFF QGD ER+ + I+P+ D N E QVGFID I P++E+
Sbjct: 251 IMEEFFRQGDRERERGMEISPMCDKHNASVEKS----QVGFIDYIVHPLWET 298
>pdb|1ZKN|A Chain A, Structure Of Pde4d2-Ibmx
pdb|1ZKN|B Chain B, Structure Of Pde4d2-Ibmx
pdb|1ZKN|C Chain C, Structure Of Pde4d2-Ibmx
pdb|1ZKN|D Chain D, Structure Of Pde4d2-Ibmx
Length = 334
Score = 34.3 bits (77), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 55 VSSEFFEQGDIERQE-LNITPI-DIMNREKEDQLPLMQVGFIDSICLPIYES 104
+ EFF QGD ER+ + I+P+ D N E QVGFID I P++E+
Sbjct: 258 IMEEFFRQGDRERERGMEISPMCDKHNASVEKS----QVGFIDYIVHPLWET 305
>pdb|1MKD|A Chain A, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|B Chain B, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|C Chain C, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|D Chain D, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|E Chain E, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|F Chain F, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|G Chain G, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|H Chain H, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|I Chain I, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|J Chain J, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|K Chain K, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|L Chain L, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
Length = 328
Score = 34.3 bits (77), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 55 VSSEFFEQGDIERQE-LNITPI-DIMNREKEDQLPLMQVGFIDSICLPIYES 104
+ EFF QGD ER+ + I+P+ D N E QVGFID I P++E+
Sbjct: 251 IMEEFFPQGDRERERGMEISPMCDKHNASVEKS----QVGFIDYIVHPLWET 298
>pdb|3SL5|A Chain A, Crystal Structure Of The Catalytic Domain Of Pde4d2
Complexed With Compound 10d
pdb|3SL5|B Chain B, Crystal Structure Of The Catalytic Domain Of Pde4d2
Complexed With Compound 10d
pdb|3SL5|C Chain C, Crystal Structure Of The Catalytic Domain Of Pde4d2
Complexed With Compound 10d
pdb|3SL5|D Chain D, Crystal Structure Of The Catalytic Domain Of Pde4d2
Complexed With Compound 10d
Length = 359
Score = 34.3 bits (77), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 55 VSSEFFEQGDIERQE-LNITPI-DIMNREKEDQLPLMQVGFIDSICLPIYES 104
+ EFF QGD ER+ + I+P+ D N E QVGFID I P++E+
Sbjct: 258 IMEEFFRQGDRERERGMEISPMCDKHNASVEKS----QVGFIDYIVHPLWET 305
>pdb|2FM0|A Chain A, Crystal Structure Of Pde4d In Complex With L-869298
pdb|2FM0|B Chain B, Crystal Structure Of Pde4d In Complex With L-869298
pdb|2FM0|C Chain C, Crystal Structure Of Pde4d In Complex With L-869298
pdb|2FM0|D Chain D, Crystal Structure Of Pde4d In Complex With L-869298
pdb|2FM5|A Chain A, Crystal Structure Of Pde4d2 In Complex With Inhibitor L-
869299
pdb|2FM5|B Chain B, Crystal Structure Of Pde4d2 In Complex With Inhibitor L-
869299
pdb|2FM5|C Chain C, Crystal Structure Of Pde4d2 In Complex With Inhibitor L-
869299
pdb|2FM5|D Chain D, Crystal Structure Of Pde4d2 In Complex With Inhibitor L-
869299
pdb|3SL3|A Chain A, Crystal Structure Of The Apo Form Of The Catalytic Domain
Of Pde4d2
pdb|3SL3|B Chain B, Crystal Structure Of The Apo Form Of The Catalytic Domain
Of Pde4d2
pdb|3SL3|C Chain C, Crystal Structure Of The Apo Form Of The Catalytic Domain
Of Pde4d2
pdb|3SL3|D Chain D, Crystal Structure Of The Apo Form Of The Catalytic Domain
Of Pde4d2
pdb|3SL4|A Chain A, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 10d
pdb|3SL4|B Chain B, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 10d
pdb|3SL4|C Chain C, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 10d
pdb|3SL4|D Chain D, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 10d
pdb|3SL6|A Chain A, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 12c
pdb|3SL6|B Chain B, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 12c
pdb|3SL6|C Chain C, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 12c
pdb|3SL6|D Chain D, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 12c
pdb|3SL8|A Chain A, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 10o
pdb|3SL8|B Chain B, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 10o
pdb|3SL8|C Chain C, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 10o
pdb|3SL8|D Chain D, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 10o
Length = 361
Score = 34.3 bits (77), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 55 VSSEFFEQGDIERQE-LNITPI-DIMNREKEDQLPLMQVGFIDSICLPIYES 104
+ EFF QGD ER+ + I+P+ D N E QVGFID I P++E+
Sbjct: 258 IMEEFFRQGDRERERGMEISPMCDKHNASVEKS----QVGFIDYIVHPLWET 305
>pdb|1Q9M|A Chain A, Three Dimensional Structures Of Pde4d In Complex With
Roliprams And Implication On Inhibitor Selectivity
pdb|1Q9M|B Chain B, Three Dimensional Structures Of Pde4d In Complex With
Roliprams And Implication On Inhibitor Selectivity
pdb|1Q9M|C Chain C, Three Dimensional Structures Of Pde4d In Complex With
Roliprams And Implication On Inhibitor Selectivity
pdb|1Q9M|D Chain D, Three Dimensional Structures Of Pde4d In Complex With
Roliprams And Implication On Inhibitor Selectivity
pdb|1OYN|A Chain A, Crystal Structure Of Pde4d2 In Complex With (R,S)-Rolipram
pdb|1OYN|B Chain B, Crystal Structure Of Pde4d2 In Complex With (R,S)-Rolipram
pdb|1OYN|C Chain C, Crystal Structure Of Pde4d2 In Complex With (R,S)-Rolipram
pdb|1OYN|D Chain D, Crystal Structure Of Pde4d2 In Complex With (R,S)-Rolipram
pdb|1PTW|A Chain A, The Crystal Structure Of Amp-bound Pde4 Suggests A
Mechanism For Phosphodiesterase Catalysis
pdb|1PTW|B Chain B, The Crystal Structure Of Amp-bound Pde4 Suggests A
Mechanism For Phosphodiesterase Catalysis
pdb|1PTW|C Chain C, The Crystal Structure Of Amp-bound Pde4 Suggests A
Mechanism For Phosphodiesterase Catalysis
pdb|1PTW|D Chain D, The Crystal Structure Of Amp-bound Pde4 Suggests A
Mechanism For Phosphodiesterase Catalysis
pdb|3V9B|A Chain A, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
(S)-N-(3-{1-
[1-(3-Cyclopropylmethoxy-4-Difluoromethoxyphenyl)-2-(1-
Oxypyridin-4- Yl)-Ethyl]-1h-Pyrazl-3-Yl}phenyl)acetamide
pdb|3V9B|B Chain B, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
(S)-N-(3-{1-
[1-(3-Cyclopropylmethoxy-4-Difluoromethoxyphenyl)-2-(1-
Oxypyridin-4- Yl)-Ethyl]-1h-Pyrazl-3-Yl}phenyl)acetamide
pdb|3V9B|C Chain C, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
(S)-N-(3-{1-
[1-(3-Cyclopropylmethoxy-4-Difluoromethoxyphenyl)-2-(1-
Oxypyridin-4- Yl)-Ethyl]-1h-Pyrazl-3-Yl}phenyl)acetamide
pdb|3V9B|D Chain D, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
(S)-N-(3-{1-
[1-(3-Cyclopropylmethoxy-4-Difluoromethoxyphenyl)-2-(1-
Oxypyridin-4- Yl)-Ethyl]-1h-Pyrazl-3-Yl}phenyl)acetamide
Length = 360
Score = 34.3 bits (77), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 55 VSSEFFEQGDIERQE-LNITPI-DIMNREKEDQLPLMQVGFIDSICLPIYES 104
+ EFF QGD ER+ + I+P+ D N E QVGFID I P++E+
Sbjct: 258 IMEEFFRQGDRERERGMEISPMCDKHNASVEKS----QVGFIDYIVHPLWET 305
>pdb|3G4I|A Chain A, Crystal Structure Of Human Phosphodiesterase 4d With
D155871
pdb|3G4I|B Chain B, Crystal Structure Of Human Phosphodiesterase 4d With
D155871
pdb|3G4I|C Chain C, Crystal Structure Of Human Phosphodiesterase 4d With
D155871
pdb|3G4I|D Chain D, Crystal Structure Of Human Phosphodiesterase 4d With
D155871
pdb|3G4K|A Chain A, Crystal Structure Of Human Phosphodiesterase 4d With
Rolipram
pdb|3G4K|B Chain B, Crystal Structure Of Human Phosphodiesterase 4d With
Rolipram
pdb|3G4K|C Chain C, Crystal Structure Of Human Phosphodiesterase 4d With
Rolipram
pdb|3G4K|D Chain D, Crystal Structure Of Human Phosphodiesterase 4d With
Rolipram
pdb|3G4L|A Chain A, Crystal Structure Of Human Phosphodiesterase 4d With
Roflumilast
pdb|3G4L|B Chain B, Crystal Structure Of Human Phosphodiesterase 4d With
Roflumilast
pdb|3G4L|C Chain C, Crystal Structure Of Human Phosphodiesterase 4d With
Roflumilast
pdb|3G4L|D Chain D, Crystal Structure Of Human Phosphodiesterase 4d With
Roflumilast
pdb|3G58|A Chain A, Crystal Structure Of Human Phosphodiesterase 4d With
D155988PMNPQ
pdb|3G58|B Chain B, Crystal Structure Of Human Phosphodiesterase 4d With
D155988PMNPQ
pdb|3G58|C Chain C, Crystal Structure Of Human Phosphodiesterase 4d With
D155988PMNPQ
pdb|3G58|D Chain D, Crystal Structure Of Human Phosphodiesterase 4d With
D155988PMNPQ
Length = 381
Score = 33.9 bits (76), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 55 VSSEFFEQGDIERQE-LNITPI-DIMNREKEDQLPLMQVGFIDSICLPIYES 104
+ EFF QGD ER+ + I+P+ D N E QVGFID I P++E+
Sbjct: 260 IMEEFFRQGDRERERGMEISPMCDKHNASVEKS----QVGFIDYIVHPLWET 307
>pdb|3IAD|A Chain A, Crystal Structure Of Human Phosphodiesterase 4d With Bound
Allosteric Modulator
pdb|3IAD|B Chain B, Crystal Structure Of Human Phosphodiesterase 4d With Bound
Allosteric Modulator
pdb|3IAD|C Chain C, Crystal Structure Of Human Phosphodiesterase 4d With Bound
Allosteric Modulator
pdb|3IAD|D Chain D, Crystal Structure Of Human Phosphodiesterase 4d With Bound
Allosteric Modulator
Length = 377
Score = 33.9 bits (76), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 55 VSSEFFEQGDIERQE-LNITPI-DIMNREKEDQLPLMQVGFIDSICLPIYES 104
+ EFF QGD ER+ + I+P+ D N E QVGFID I P++E+
Sbjct: 260 IMEEFFRQGDRERERGMEISPMCDKHNASVEKS----QVGFIDYIVHPLWET 307
>pdb|1SO2|A Chain A, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With A Dihydropyridazine Inhibitor
pdb|1SO2|B Chain B, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With A Dihydropyridazine Inhibitor
pdb|1SO2|C Chain C, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With A Dihydropyridazine Inhibitor
pdb|1SO2|D Chain D, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With A Dihydropyridazine Inhibitor
pdb|1SOJ|A Chain A, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|B Chain B, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|C Chain C, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|D Chain D, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|E Chain E, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|F Chain F, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|G Chain G, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|H Chain H, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|J Chain J, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|K Chain K, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|L Chain L, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|I Chain I, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
Length = 420
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 49 LKVAELVSSEFFEQGDIERQELNITPIDIMNREKEDQLPLMQVGFIDSICLPIYES 104
LK E + +EF+EQGD E L + M+R QL +Q FI I P+ S
Sbjct: 296 LKWTEGIVNEFYEQGD-EEANLGLPISPFMDRSSP-QLAKLQESFITHIVGPLCNS 349
>pdb|3DY8|A Chain A, Human Phosphodiesterase 9 In Complex With Product 5'-gmp
(e+p Complex)
pdb|3DY8|B Chain B, Human Phosphodiesterase 9 In Complex With Product 5'-gmp
(e+p Complex)
pdb|3DYL|A Chain A, Human Phosphdiesterase 9 Substrate Complex (Es Complex)
pdb|3DYL|B Chain B, Human Phosphdiesterase 9 Substrate Complex (Es Complex)
pdb|3DYN|A Chain A, Human Phosphodiestrase 9 In Complex With Cgmp (Zn
Inhibited)
pdb|3DYN|B Chain B, Human Phosphodiestrase 9 In Complex With Cgmp (Zn
Inhibited)
pdb|3DYQ|A Chain A, Human Phosphodiestrase 9 (Inhibited By Omitting Divalent
Cation) In Complex With Cgmp
pdb|3DYQ|B Chain B, Human Phosphodiestrase 9 (Inhibited By Omitting Divalent
Cation) In Complex With Cgmp
pdb|3DYS|A Chain A, Human Phosphodiestrase-5'gmp Complex (Ep), Produced By
Soaking With 20mm Cgmp+20 Mm Mncl2+20 Mm Mgcl2 For 2
Hours, And Flash-Cooled To Liquid Nitrogen Temperature
When Substrate Was Still Abudant.
pdb|3DYS|B Chain B, Human Phosphodiestrase-5'gmp Complex (Ep), Produced By
Soaking With 20mm Cgmp+20 Mm Mncl2+20 Mm Mgcl2 For 2
Hours, And Flash-Cooled To Liquid Nitrogen Temperature
When Substrate Was Still Abudant.
pdb|3JSI|A Chain A, Human Phosphodiesterase 9 In Complex With Inhibitor
pdb|3JSI|B Chain B, Human Phosphodiesterase 9 In Complex With Inhibitor
pdb|3JSW|A Chain A, Human Pde9 In Complex With Selective Inhibitor
pdb|3JSW|B Chain B, Human Pde9 In Complex With Selective Inhibitor
pdb|4E90|A Chain A, Human Phosphodiesterase 9 In Complex With Inhibitors
pdb|4E90|B Chain B, Human Phosphodiesterase 9 In Complex With Inhibitors
Length = 329
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 58 EFFEQGDIERQE-LNITPIDIMNREKEDQLPLMQVGFIDSICLPIYEST 105
E+F Q D E+ E L + P M+R+K + Q+GFI + +P++E+
Sbjct: 246 EYFMQSDREKSEGLPVAPF--MDRDKVTK-ATAQIGFIKFVLIPMFETV 291
>pdb|2YY2|A Chain A, Crystal Structure Of The Human Phosphodiesterase 9a
Catalytic Domain Complexed With Ibmx
pdb|2YY2|B Chain B, Crystal Structure Of The Human Phosphodiesterase 9a
Catalytic Domain Complexed With Ibmx
Length = 333
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 58 EFFEQGDIERQE-LNITPIDIMNREKEDQLPLMQVGFIDSICLPIYEST 105
E+F Q D E+ E L + P M+R+K + Q+GFI + +P++E+
Sbjct: 250 EYFMQSDREKSEGLPVAPF--MDRDKVTKA-TAQIGFIKFVLIPMFETV 295
>pdb|3N3Z|A Chain A, Crystal Structure Of Pde9a (E406a) Mutant In Complex With
Ibmx
pdb|3N3Z|B Chain B, Crystal Structure Of Pde9a (E406a) Mutant In Complex With
Ibmx
Length = 326
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 58 EFFEQGDIERQE-LNITPIDIMNREKEDQLPLMQVGFIDSICLPIYEST 105
E+F Q D E+ E L + P M+R+K + Q+GFI + +P++E+
Sbjct: 243 EYFMQSDREKSEGLPVAPF--MDRDKVTK-ATAQIGFIKFVLIPMFETV 288
>pdb|2HD1|A Chain A, Crystal Structure Of Pde9 In Complex With Ibmx
pdb|2HD1|B Chain B, Crystal Structure Of Pde9 In Complex With Ibmx
pdb|3K3E|A Chain A, Crystal Structure Of The Pde9a Catalytic Domain In Complex
With (R)-Bay73-6691
pdb|3K3E|B Chain B, Crystal Structure Of The Pde9a Catalytic Domain In Complex
With (R)-Bay73-6691
pdb|3K3H|A Chain A, Crystal Structure Of The Pde9a Catalytic Domain In Complex
With (S)-Bay73-6691
pdb|3K3H|B Chain B, Crystal Structure Of The Pde9a Catalytic Domain In Complex
With (S)-Bay73-6691
pdb|4GH6|A Chain A, Crystal Structure Of The Pde9a Catalytic Domain In Complex
With Inhibitor 28
pdb|4GH6|B Chain B, Crystal Structure Of The Pde9a Catalytic Domain In Complex
With Inhibitor 28
Length = 326
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 58 EFFEQGDIERQE-LNITPIDIMNREKEDQLPLMQVGFIDSICLPIYEST 105
E+F Q D E+ E L + P M+R+K + Q+GFI + +P++E+
Sbjct: 243 EYFMQSDREKSEGLPVAPF--MDRDKVTK-ATAQIGFIKFVLIPMFETV 288
>pdb|1EXS|A Chain A, Structure Of Porcine Beta-lactoglobulin
Length = 160
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Query: 227 MTVCDLAAITKPWHVEKRAFAELS---DKLEPL---VEGVRSNKQHWLEIAAEKRKQDER 280
MT D + WH A +++S K PL VEG++ + LEI +KR+ D
Sbjct: 7 MTELDTQKVAGTWHTVAMAVSDVSLLDAKSSPLKAYVEGLKPTPEGDLEILLQKREND-- 64
Query: 281 ERCAE 285
+CA+
Sbjct: 65 -KCAQ 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,872,942
Number of Sequences: 62578
Number of extensions: 300253
Number of successful extensions: 1045
Number of sequences better than 100.0: 72
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 889
Number of HSP's gapped (non-prelim): 166
length of query: 286
length of database: 14,973,337
effective HSP length: 98
effective length of query: 188
effective length of database: 8,840,693
effective search space: 1662050284
effective search space used: 1662050284
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)