Query psy14371
Match_columns 286
No_of_seqs 146 out of 1079
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 18:09:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14371.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14371hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3689|consensus 100.0 6.8E-56 1.5E-60 444.4 16.0 229 1-274 348-678 (707)
2 KOG3688|consensus 100.0 7.6E-40 1.6E-44 309.7 15.2 180 23-244 144-379 (554)
3 PF00233 PDEase_I: 3'5'-cyclic 100.0 5.4E-40 1.2E-44 297.2 9.8 149 77-264 1-237 (237)
4 KOG1229|consensus 100.0 2.8E-33 6.1E-38 266.0 12.3 217 32-275 442-766 (775)
5 KOG3689|consensus 98.0 2.4E-06 5.1E-11 87.7 2.6 82 48-144 595-676 (707)
6 PF00233 PDEase_I: 3'5'-cyclic 97.1 0.00015 3.3E-09 65.8 0.6 64 46-113 161-224 (237)
7 KOG3688|consensus 96.5 0.0017 3.7E-08 63.4 3.0 54 48-104 377-431 (554)
8 cd00077 HDc Metal dependent ph 95.0 0.0067 1.5E-07 47.4 0.1 48 78-137 2-49 (145)
9 TIGR01353 dGTP_triPase deoxygu 92.5 0.046 1E-06 53.2 0.7 55 76-137 35-93 (381)
10 smart00471 HDc Metal dependent 92.0 0.03 6.5E-07 42.9 -1.0 48 76-137 2-49 (124)
11 COG0232 Dgt dGTP triphosphohyd 92.0 0.056 1.2E-06 53.0 0.6 50 76-134 65-114 (412)
12 PRK01286 deoxyguanosinetriphos 89.8 0.094 2E-06 50.2 -0.1 66 58-138 41-107 (336)
13 KOG2681|consensus 89.6 0.36 7.7E-06 47.6 3.7 80 57-140 49-131 (498)
14 PRK03007 deoxyguanosinetriphos 88.5 0.097 2.1E-06 51.7 -1.0 48 76-137 67-114 (428)
15 PRK01096 deoxyguanosinetriphos 87.3 0.14 2.9E-06 50.9 -0.8 72 58-137 40-120 (440)
16 COG2206 c-di-GMP phosphodieste 87.3 0.97 2.1E-05 43.2 5.0 45 111-155 169-215 (344)
17 COG1078 HD superfamily phospho 87.2 0.36 7.9E-06 47.7 2.1 76 57-139 27-106 (421)
18 PRK04926 dgt deoxyguanosinetri 85.8 0.25 5.3E-06 49.8 0.1 55 75-137 61-128 (503)
19 PRK05318 deoxyguanosinetriphos 85.4 0.29 6.2E-06 48.5 0.3 70 58-137 37-113 (432)
20 PF01966 HD: HD domain; Inter 84.8 0.13 2.8E-06 39.8 -2.0 53 113-171 22-74 (122)
21 PRK01759 glnD PII uridylyl-tra 69.5 34 0.00073 36.9 10.1 15 116-130 473-487 (854)
22 PRK05092 PII uridylyl-transfer 69.5 50 0.0011 35.9 11.5 39 117-156 531-581 (931)
23 PRK00275 glnD PII uridylyl-tra 64.3 46 0.00099 36.2 9.9 38 118-156 499-548 (895)
24 TIGR01693 UTase_glnD [Protein- 63.0 46 0.001 35.7 9.6 16 116-131 465-480 (850)
25 KOG1229|consensus 61.9 6.2 0.00013 39.4 2.6 54 48-103 682-736 (775)
26 PRK10119 putative hydrolase; P 54.7 5.7 0.00012 36.2 0.9 41 75-130 22-62 (231)
27 TIGR03276 Phn-HD phosphonate d 54.4 6.1 0.00013 34.6 1.0 14 118-131 45-58 (179)
28 PRK00227 glnD PII uridylyl-tra 54.3 44 0.00096 35.3 7.5 39 118-156 404-453 (693)
29 PRK05007 PII uridylyl-transfer 50.2 40 0.00086 36.6 6.6 16 117-132 499-514 (884)
30 PRK03059 PII uridylyl-transfer 46.8 72 0.0016 34.5 7.9 17 116-132 477-493 (856)
31 COG4341 Predicted HD phosphohy 46.1 7.9 0.00017 33.6 0.4 15 118-132 50-64 (186)
32 PRK04374 PII uridylyl-transfer 43.7 2.5E+02 0.0054 30.5 11.3 39 118-156 488-537 (869)
33 PRK07152 nadD putative nicotin 35.9 51 0.0011 31.4 4.3 33 222-254 295-327 (342)
34 TIGR00277 HDIG uncharacterized 34.1 25 0.00055 24.8 1.5 16 118-133 29-44 (80)
35 PRK03381 PII uridylyl-transfer 29.6 79 0.0017 33.8 4.8 14 118-131 444-457 (774)
36 COG2844 GlnD UTP:GlnB (protein 25.4 4.8E+02 0.01 28.4 9.5 43 117-159 484-537 (867)
37 COG3437 Response regulator con 23.8 1.8E+02 0.0038 28.4 5.6 42 111-152 206-249 (360)
38 PF10295 DUF2406: Uncharacteri 23.3 38 0.00082 25.2 0.8 15 224-238 37-51 (69)
39 PF07514 TraI_2: Putative heli 22.8 47 0.001 31.7 1.5 17 116-132 104-120 (327)
40 TIGR03760 ICE_TraI_Pfluor inte 22.7 38 0.00083 30.5 0.8 15 117-131 106-120 (218)
No 1
>KOG3689|consensus
Probab=100.00 E-value=6.8e-56 Score=444.38 Aligned_cols=229 Identities=32% Similarity=0.570 Sum_probs=216.4
Q ss_pred CchhhhhhcCccChHHHhcCCCCCCChhhhcCCCCCCCCCccCCchhhhhHHHHHHHHHhhcCchhhhcC----------
Q psy14371 1 MNYDVIAYGSVYRDVKLHDLPSLRVPSAAKLNLHDFKFDDIHMEDDDTLKVAELVSSEFFEQGDIERQEL---------- 70 (286)
Q Consensus 1 ~~~e~~~y~~~~~~~e~~~l~~~~~p~~~~~~l~~w~Fd~~~l~~~e~~~~~~~i~~~F~~~g~lekf~i---------- 70 (286)
+++|+++||++|.++|++.+ | +....+.+|.|+++.+++.++..+++. ||.++|++++|+|
T Consensus 348 v~~e~l~~h~~~~~~e~~~~-----~-~~~~~l~d~~f~d~~~~~~~l~~~~~~---mf~~l~lv~~f~I~~~tL~r~ll 418 (707)
T KOG3689|consen 348 VALEFLSYHAKALEEEVQWG-----P-ATILKLLDFFFSDRLLSENELTKCTFR---MFQDLGLVKKFKIDVETLCRFLL 418 (707)
T ss_pred hhHHHHHHHHhhhHHhhccc-----c-hhhhccccceeccccCCCchHHHHHHH---HHHHcCcceeeccCHHHHHHHHh
Confidence 46899999999999999999 5 566789999999999999999999887 9999999999987
Q ss_pred ----CCC-CCCCCCccccCCccccccccccccccccccccchhhhhchHHHHHHHHHHHhccCCCCCCCCccccc-----
Q psy14371 71 ----NIT-PIDIMNREKEDQLPLMQVGFIDSICLPIYESTQWWKIFGEIECLALLIACLCHDLDHRGTNNSFQIN----- 140 (286)
Q Consensus 71 ----~Y~-~~pyHN~~~~Ha~~v~Q~~f~~~~~~~l~~~~~l~~~l~~~e~lalliaal~HDvdH~G~nN~f~~~----- 140 (286)
+|+ +||||||. ||++|+| +++.+++.+.+...|+++|++|+++||+|||+||||+||.|+++
T Consensus 419 tV~k~Yr~~v~YHNw~--HAf~VaQ------~m~~lL~t~~L~~~fTdlEiLalliAalcHDlDHrGtNN~f~iks~s~L 490 (707)
T KOG3689|consen 419 TVEKNYRSNVPYHNWR--HAFDVAQ------AMFALLKTPKLQNKFTDLEILALLIAALCHDLDHRGTNNSYLIKSNSPL 490 (707)
T ss_pred hhhhccccCCcchhHH--HHHHHHH------HHHHHHhchhHHhhcChHHHHHHHHHHHHccCCCCCCCcHHHHhcCCHH
Confidence 488 99999999 9999999 99999999999999999999999999999999999999999998
Q ss_pred -------------------------------CCCHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhCCCcccccccc
Q psy14371 141 -------------------------------NVSPDEYSRIIKVLEEAILSTDLAVYFRQRGSFLSLVKGGSLAWHREAD 189 (286)
Q Consensus 141 -------------------------------~L~~~~~~~~r~~ii~~ILATDMa~Hf~~~~~f~~~~~~~~~~~~~~~~ 189 (286)
||++++|++++++|+++|||||||+||+++++|++.+..+
T Consensus 491 A~lY~~~SvLE~HH~~~~~~lLqe~~~nIfsnLs~~~~~~~~~~i~~~ILATDla~h~~~~~~lk~~v~~~--------- 561 (707)
T KOG3689|consen 491 AQLYNDSSVLENHHFAQAFKLLQEEGCNIFSNLSKKQYQQIRKLIIDAILATDLALHFKKRADLKEMVETK--------- 561 (707)
T ss_pred HHHhCCccHHHHHHHHHHHHHHhccccchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------
Confidence 8999999999999999999999999999999999998763
Q ss_pred hhhhHhhhccccccccccCCCCCCCChhhHHHHHHHhhhhccCcCCCCChHHHHH-------------------------
Q psy14371 190 RDLAVYFRQRGSFLSLVKGGSLAWHREADRGLLRGMTMTVCDLAAITKPWHVEKR------------------------- 244 (286)
Q Consensus 190 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~ll~~~ii~~aDisn~~kp~~v~~k------------------------- 244 (286)
+.|++.+++||.++++|+||||||||+||||+++++
T Consensus 562 -------------------~~~~~~~~~hr~lvl~mmmtacDLSn~TKpwei~~qwa~~I~~EFf~QGDeek~lg~~p~p 622 (707)
T KOG3689|consen 562 -------------------GVYDLENYSHRILVLAMMMTACDLSNPTKPWEIQKQWAELIAEEFFDQGDEEKELGLEPSP 622 (707)
T ss_pred -------------------CcccccchhHHHHHHHHHHHHhhccCCcCCccHHHHHHHHHHHHHHhcchHHHHcCCCCCc
Confidence 268889999999999999999999999999999999
Q ss_pred --------------------------HHHHHccChHHHHHHHHHHHHHHHHHHHHH
Q psy14371 245 --------------------------AFAELSDKLEPLVEGVRSNKQHWLEIAAEK 274 (286)
Q Consensus 245 --------------------------~~a~~~p~~~~~~~~~~~N~~~W~~~~~~~ 274 (286)
++++++|+.+|+++++..||..|++++++.
T Consensus 623 mmDR~k~~vp~~QvgFid~I~~Plyet~a~l~~~~~pmld~l~~Nr~~w~~l~~~~ 678 (707)
T KOG3689|consen 623 MMDRDKASVPKLQVGFIDYICIPLYETWADLVPDAQPMLDGLEDNREWWQSLIPES 678 (707)
T ss_pred ccccCcccCchhhhhHHHHHHHHHHHHHHHhccchhhHHHHHHHhHHHHHHhhhhh
Confidence 689999999999999999999999999733
No 2
>KOG3688|consensus
Probab=100.00 E-value=7.6e-40 Score=309.74 Aligned_cols=180 Identities=24% Similarity=0.326 Sum_probs=158.4
Q ss_pred CCCChhh---hcCCCCCCCCCccCCchhhhhHHHHH-HHHHhhcCchhhhcCC--------------C--CCCCCCCccc
Q psy14371 23 LRVPSAA---KLNLHDFKFDDIHMEDDDTLKVAELV-SSEFFEQGDIERQELN--------------I--TPIDIMNREK 82 (286)
Q Consensus 23 ~~~p~~~---~~~l~~w~Fd~~~l~~~e~~~~~~~i-~~~F~~~g~lekf~i~--------------Y--~~~pyHN~~~ 82 (286)
..+|-++ -.+++.|.||+|.+.+..-......+ +++|...|++.+|+|+ | ..|||||-.
T Consensus 144 ~~~p~~v~~~lk~~d~w~FdVf~lneas~~HaLk~~~~El~~ry~~I~rfkip~~~l~~f~~ale~gy~k~knPyhn~~- 222 (554)
T KOG3688|consen 144 LAYPPAVIELLKDVDKWSFDVFALNEASGGHALKFVYYELFTRYNLIHRFKIPHGCLELFAHALEVGYSKYKNPYHNLI- 222 (554)
T ss_pred cCCCHHHHHHHHHhhhceecceecccccccchhHHHHHhhhhhhcchhhhcccHHHHHHHHHHHHhcccCCCCCccchh-
Confidence 4555443 25899999999999874433333333 5677799999999874 4 468999999
Q ss_pred cCCccccccccccccccccccccchhhhhchHHHHHHHHHHHhccCCCCCCCCccccc----------------------
Q psy14371 83 EDQLPLMQVGFIDSICLPIYESTQWWKIFGEIECLALLIACLCHDLDHRGTNNSFQIN---------------------- 140 (286)
Q Consensus 83 ~Ha~~v~Q~~f~~~~~~~l~~~~~l~~~l~~~e~lalliaal~HDvdH~G~nN~f~~~---------------------- 140 (286)
||+||+| .+++++..+|+...|+.+|++|+++||+.||++|+|++|+|+|.
T Consensus 223 -haadVtq------t~H~~l~~Tgim~~Lt~LEllA~~faAaiHDYeHtGtTNnFhiQt~s~~AiLYNDRSVLENHH~sa 295 (554)
T KOG3688|consen 223 -HAADVTQ------TVHYHLLHTGIMNWLTELELLALLFAAAIHDYEHTGTTNNFHIQTRSDKAILYNDRSVLENHHASA 295 (554)
T ss_pred -hhhhccc------CchHHhhhhhHHHHHHHHHHHHHHHHHHHhcccCCCcccceEEEecCceeEEeccHHHHhhhhHHH
Confidence 9999999 99999999999999999999999999999999999999999997
Q ss_pred --------------CCCHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhCCCcccccccchhhhHhhhccccccccc
Q psy14371 141 --------------NVSPDEYSRIIKVLEEAILSTDLAVYFRQRGSFLSLVKGGSLAWHREADRDLAVYFRQRGSFLSLV 206 (286)
Q Consensus 141 --------------~L~~~~~~~~r~~ii~~ILATDMa~Hf~~~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 206 (286)
||+++|++++|.++|++||||||+.||+++..|++.++..
T Consensus 296 s~rLl~edE~nil~nLs~de~relR~LViEmVLaTDms~HFqqiktmk~~L~~~-------------------------- 349 (554)
T KOG3688|consen 296 SFRLLQEDEMNILINLSKDEWRELRNLVIEMVLATDMSQHFQQIKTMKERLQQP-------------------------- 349 (554)
T ss_pred HHHHhcchhhhHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhCh--------------------------
Confidence 8999999999999999999999999999999999988753
Q ss_pred cCCCCCCCChhhHHHHHHHhhhhccCcCCCCChHHHHH
Q psy14371 207 KGGSLAWHREADRGLLRGMTMTVCDLAAITKPWHVEKR 244 (286)
Q Consensus 207 ~~~~~~~~~~~~r~ll~~~ii~~aDisn~~kp~~v~~k 244 (286)
...||..++++++||||||+|+|||.++.+
T Consensus 350 --------e~iDk~k~lsLllh~aDIshPaK~w~lH~r 379 (554)
T KOG3688|consen 350 --------EGIDKLKALSLLLHAADISHPAKPWGLHHR 379 (554)
T ss_pred --------hhhhhHHHHHHHHHHhccCCCcccccHHHH
Confidence 237899999999999999999999999999
No 3
>PF00233 PDEase_I: 3'5'-cyclic nucleotide phosphodiesterase; InterPro: IPR002073 The cyclic nucleotide phosphodiesterases (PDE) comprise a group of enzymes that degrade the phosphodiester bond in the second messenger molecules cAMP and cGMP. They are divided into 11 families. They regulate the localisation, duration and amplitude of cyclic nucleotide signalling within subcellular domains. PDEs are therefore important for signal transduction. PDE enzymes are often targets for pharmacological inhibition due to their unique tissue distribution, structural properties, and functional properties. Inhibitors include: Roflumilast for chronic obstructive pulmonary disease and asthma [], Sildenafil for erectile dysfunction [] and Cilostazol for peripheral arterial occlusive disease [], amongst others. Retinal 3',5'-cGMP phosphodiesterase is located in photoreceptor outer segments: it is light activated, playing a pivotal role in signal transduction. In rod cells, PDE is oligomeric, comprising an alpha-, a beta- and 2 gamma-subunits, while in cones, PDE is a homodimer of alpha chains, which are associated with several smaller subunits. Both rod and cone PDEs catalyse the hydrolysis of cAMP or cGMP to the corresponding nucleoside 5' monophosphates, both enzymes also binding cGMP with high affinity. The cGMP-binding sites are located in the N-terminal half of the protein sequence, while the catalytic core resides in the C-terminal portion. This entry represents the catalytic domain of PDE which is multihelical and can be divided into three subdomains.; GO: 0004114 3',5'-cyclic-nucleotide phosphodiesterase activity, 0007165 signal transduction; PDB: 3I8V_A 3TVX_A 2QYK_A 1ZKL_A 3G3N_A 4DFF_B 2OUS_B 3SNL_A 2OUY_A 2OUP_B ....
Probab=100.00 E-value=5.4e-40 Score=297.23 Aligned_cols=149 Identities=32% Similarity=0.563 Sum_probs=134.8
Q ss_pred CCCccccCCccccccccccccccccccccchhhhhchHHHHHHHHHHHhccCCCCCCCCccccc----------------
Q psy14371 77 IMNREKEDQLPLMQVGFIDSICLPIYESTQWWKIFGEIECLALLIACLCHDLDHRGTNNSFQIN---------------- 140 (286)
Q Consensus 77 yHN~~~~Ha~~v~Q~~f~~~~~~~l~~~~~l~~~l~~~e~lalliaal~HDvdH~G~nN~f~~~---------------- 140 (286)
||||. ||+||+| +++.++..+++...|+++|++|+++||+|||+||||+||.|+++
T Consensus 1 yHN~~--Ha~dV~q------~~~~ll~~~~~~~~l~~~e~~alliAal~HDv~HpG~~N~flv~~~~~LA~~Y~d~SvLE 72 (237)
T PF00233_consen 1 YHNFR--HAADVLQ------FVYYLLSNGGLREYLSPLEIFALLIAALCHDVDHPGVNNAFLVKTNSPLAILYNDRSVLE 72 (237)
T ss_dssp SSSHH--HHHHHHH------HHHHHHHHGGGGTTS-HHHHHHHHHHHHHTTTT-SSSCHHHHHHTTSHHHHHTTTSSHHH
T ss_pred CCCHH--HHHHHHH------HHHHHHHccCccccCCHHHHHHHHHHHHHhcCCCCccccchhhccccchhhhcCccCCcc
Confidence 89999 9999999 99999999999999999999999999999999999999999998
Q ss_pred --------------------CCCHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhCCCcccccccchhhhHhhhccc
Q psy14371 141 --------------------NVSPDEYSRIIKVLEEAILSTDLAVYFRQRGSFLSLVKGGSLAWHREADRDLAVYFRQRG 200 (286)
Q Consensus 141 --------------------~L~~~~~~~~r~~ii~~ILATDMa~Hf~~~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~ 200 (286)
++++++++.+|++|+++||||||++||+++++|++.+....
T Consensus 73 ~~H~~~~~~lL~~~~~nil~~l~~~~~~~~r~~ii~~ILaTDm~~h~~~~~~~~~~~~~~~------------------- 133 (237)
T PF00233_consen 73 NHHCALAFQLLRKEECNILSNLSEDDYQEFRKLIIELILATDMSKHFELLSKLQEKLDSGD------------------- 133 (237)
T ss_dssp HHHHHHHHHHHTSTTTTTTTTS-HHHHHHHHHHHHHHHHTTSGGGHHHHHHHHHHHHHTTE-------------------
T ss_pred ccHHHHHHHHHHhhhhhhhcchhhhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHhhhhc-------------------
Confidence 68899999999999999999999999999999999887540
Q ss_pred cccccccCCCCCCCChhhHHHHHHHhhhhccCcCCCCChHHHHH------------------------------------
Q psy14371 201 SFLSLVKGGSLAWHREADRGLLRGMTMTVCDLAAITKPWHVEKR------------------------------------ 244 (286)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~r~ll~~~ii~~aDisn~~kp~~v~~k------------------------------------ 244 (286)
.+ +.++|.++++++||||||||++|||+++++
T Consensus 134 ---------~~---~~~~r~~~l~~ll~~ADisn~~rp~~~~~kW~~~l~~Ef~~Qgd~E~~~gl~~s~~~dr~~~~~~~ 201 (237)
T PF00233_consen 134 ---------FL---DEDDRQLLLQLLLKAADISNPARPWDVAKKWAERLMEEFFRQGDLEKELGLPVSPLMDRDKTNLAK 201 (237)
T ss_dssp ---------BT---TTCHHHHHHHHHHHHHHTGGGGS-HHHHHHHHHHHHHHHHHHHHHHHHTTSSSCTTGSTTTGGHHH
T ss_pred ---------cc---chHHHHHHHHhcccccccccccCcHHHHHHHHHHHHHHHhhhhhHHHHcCCCcccccCccccCccc
Confidence 11 234999999999999999999999999999
Q ss_pred ---------------HHHHHccC-hHHHHHHHHHHH
Q psy14371 245 ---------------AFAELSDK-LEPLVEGVRSNK 264 (286)
Q Consensus 245 ---------------~~a~~~p~-~~~~~~~~~~N~ 264 (286)
++++++|+ ++++++++++||
T Consensus 202 ~Qi~Fi~~iv~Plf~~l~~~~p~~~~~~~~~l~~Nr 237 (237)
T PF00233_consen 202 SQIGFIDFIVKPLFEALAKLFPEDLQPLLDQLEENR 237 (237)
T ss_dssp HHHHHHHHTHHHHHHHHHHHSTTTGHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHHCHHHHHHHHHHHHcCC
Confidence 67899999 999999999997
No 4
>KOG1229|consensus
Probab=100.00 E-value=2.8e-33 Score=266.04 Aligned_cols=217 Identities=20% Similarity=0.282 Sum_probs=171.0
Q ss_pred CCCCCCCCCccCCchh----hhhHHHHHHHHHhhcCchhhhcC--------------CC-CCCCCCCccccCCccccccc
Q psy14371 32 NLHDFKFDDIHMEDDD----TLKVAELVSSEFFEQGDIERQEL--------------NI-TPIDIMNREKEDQLPLMQVG 92 (286)
Q Consensus 32 ~l~~w~Fd~~~l~~~e----~~~~~~~i~~~F~~~g~lekf~i--------------~Y-~~~pyHN~~~~Ha~~v~Q~~ 92 (286)
+=.+|+||+|+++.-. +.+++ ++.|.+.|+.+-++. +| ..|.|||.. ||+||+|
T Consensus 442 Nde~WdFdIfeLEais~~~~L~~lG---lKVFeRfgVCdfL~CSd~~L~aWf~~IEA~YHa~NaYHNaT--HAADVLh-- 514 (775)
T KOG1229|consen 442 NDECWDFDIFELEAISDHHALSQLG---LKVFERFGVCDFLGCSDDLLHAWFLSIEAHYHAGNAYHNAT--HAADVLH-- 514 (775)
T ss_pred cccccccceeeeeeccccchHHHHh---HHHHHHhcccccccCcHHHHHHHHHHHhhhhcccccccccc--hHHHHHH--
Confidence 4478999999998632 33333 458888887776542 46 578999999 9999999
Q ss_pred cccccccccccccchhhhhchHHHHHHHHHHHhccCCCCCCCCccccc--------------------------------
Q psy14371 93 FIDSICLPIYESTQWWKIFGEIECLALLIACLCHDLDHRGTNNSFQIN-------------------------------- 140 (286)
Q Consensus 93 f~~~~~~~l~~~~~l~~~l~~~e~lalliaal~HDvdH~G~nN~f~~~-------------------------------- 140 (286)
..-.++....+...++.++..|.++||..||+||||.+|+|+++
T Consensus 515 ----ATaFFL~kerV~g~ldeld~VAALiAAaVHDlDHPGR~NafLcNagqeLAiLYNDnaiLEnHH~ALAFQLTlkdn~ 590 (775)
T KOG1229|consen 515 ----ATAFFLDKERVAGHLDELDAVAALIAAAVHDLDHPGRGNAFLCNAGQELAILYNDNAILENHHIALAFQLTLKDNA 590 (775)
T ss_pred ----HHHHhcCCchhhcccchHHHHHHHHHHHHhccCCCCCCceeEecCCcceeEEeccchHhhhhhhhheeeeeeccCc
Confidence 76677777778889999999999999999999999999999998
Q ss_pred ------CCCHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhCCCcccccccchhhhHhhhccccccccccCCCCCCC
Q psy14371 141 ------NVSPDEYSRIIKVLEEAILSTDLAVYFRQRGSFLSLVKGGSLAWHREADRDLAVYFRQRGSFLSLVKGGSLAWH 214 (286)
Q Consensus 141 ------~L~~~~~~~~r~~ii~~ILATDMa~Hf~~~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 214 (286)
++++++|..+|..||+|+|||||++||+.+.+|++.+.+. .+-+...+ + +.....+..|
T Consensus 591 ncNIFknidRe~f~qlR~AiidMVLATdiskHFEhl~KF~ksinkp-maaeiegs---------D--cecepagknf--- 655 (775)
T KOG1229|consen 591 NCNIFKNIDREEFIQLRHAIIDMVLATDISKHFEHLAKFNKSINKP-MAAEIEGS---------D--CECEPAGKNF--- 655 (775)
T ss_pred ccchhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccceeecc---------c--CccccccCCC---
Confidence 6889999999999999999999999999999999877643 11100000 0 0011111222
Q ss_pred ChhhHHHHHHHhhhhccCcCCCCChHHHHH-------------------------------------------------H
Q psy14371 215 READRGLLRGMTMTVCDLAAITKPWHVEKR-------------------------------------------------A 245 (286)
Q Consensus 215 ~~~~r~ll~~~ii~~aDisn~~kp~~v~~k-------------------------------------------------~ 245 (286)
++...+++.|++|||||+||+|||+++.+ +
T Consensus 656 -~eNqilI~~MliKCADiaNP~R~ldLCieWAgRIsEEYFaQTdEEK~kGLPV~M~VFDRNTCniP~sQ~~FID~F~~d~ 734 (775)
T KOG1229|consen 656 -DENQILICDMLIKCADIANPARELDLCIEWAGRISEEYFAQTDEEKEKGLPVTMEVFDRNTCNIPISQCGFIDMFARDA 734 (775)
T ss_pred -CccceeHHHHHHHHhccCCccchhhHHHHHHhHHHHHHHHhhhHHHhcCCceeeeeecCCccCCchhhhhHHHHHHHHH
Confidence 46778999999999999999999999987 2
Q ss_pred HH--HHccChHHHHHHHHHHHHHHHHHHHHHH
Q psy14371 246 FA--ELSDKLEPLVEGVRSNKQHWLEIAAEKR 275 (286)
Q Consensus 246 ~a--~~~p~~~~~~~~~~~N~~~W~~~~~~~~ 275 (286)
|+ +.|..+..+++++.+|+++|+-+.+...
T Consensus 735 F~a~daFAhL~aLmdhLadNYehWKtlddlkc 766 (775)
T KOG1229|consen 735 FAAFDAFAHLGALMDHLADNYEHWKTLDDLKC 766 (775)
T ss_pred HHHHHHHHhhHHHHHHHHHhhhhheechhhcC
Confidence 22 3578899999999999999998876543
No 5
>KOG3689|consensus
Probab=98.03 E-value=2.4e-06 Score=87.67 Aligned_cols=82 Identities=39% Similarity=0.772 Sum_probs=66.1
Q ss_pred hhhHHHHHHHHHhhcCchhhhcCCCCCCCCCCccccCCccccccccccccccccccccchhhhhchHHHHHHHHHHHhcc
Q psy14371 48 TLKVAELVSSEFFEQGDIERQELNITPIDIMNREKEDQLPLMQVGFIDSICLPIYESTQWWKIFGEIECLALLIACLCHD 127 (286)
Q Consensus 48 ~~~~~~~i~~~F~~~g~lekf~i~Y~~~pyHN~~~~Ha~~v~Q~~f~~~~~~~l~~~~~l~~~l~~~e~lalliaal~HD 127 (286)
..+|+.+|+++||+||+ ++..++..+.|++|+.|+. ++.+|+|||+++|.|+|+. |.+++++.+ .|+-+.
T Consensus 595 ~~qwa~~I~~EFf~QGD-eek~lg~~p~pmmDR~k~~-vp~~QvgFid~I~~Plyet--~a~l~~~~~--pmld~l---- 664 (707)
T KOG3689|consen 595 QKQWAELIAEEFFDQGD-EEKELGLEPSPMMDRDKAS-VPKLQVGFIDYICIPLYET--WADLVPDAQ--PMLDGL---- 664 (707)
T ss_pred HHHHHHHHHHHHHhcch-HHHHcCCCCCcccccCccc-CchhhhhHHHHHHHHHHHH--HHHhccchh--hHHHHH----
Confidence 46889999999999999 6668999999999999985 9999999999999999997 677775443 444322
Q ss_pred CCCCCCCCcccccCCCH
Q psy14371 128 LDHRGTNNSFQINNVSP 144 (286)
Q Consensus 128 vdH~G~nN~f~~~~L~~ 144 (286)
.+|+..|+.|.+
T Consensus 665 -----~~Nr~~w~~l~~ 676 (707)
T KOG3689|consen 665 -----EDNREWWQSLIP 676 (707)
T ss_pred -----HHhHHHHHHhhh
Confidence 457777766643
No 6
>PF00233 PDEase_I: 3'5'-cyclic nucleotide phosphodiesterase; InterPro: IPR002073 The cyclic nucleotide phosphodiesterases (PDE) comprise a group of enzymes that degrade the phosphodiester bond in the second messenger molecules cAMP and cGMP. They are divided into 11 families. They regulate the localisation, duration and amplitude of cyclic nucleotide signalling within subcellular domains. PDEs are therefore important for signal transduction. PDE enzymes are often targets for pharmacological inhibition due to their unique tissue distribution, structural properties, and functional properties. Inhibitors include: Roflumilast for chronic obstructive pulmonary disease and asthma [], Sildenafil for erectile dysfunction [] and Cilostazol for peripheral arterial occlusive disease [], amongst others. Retinal 3',5'-cGMP phosphodiesterase is located in photoreceptor outer segments: it is light activated, playing a pivotal role in signal transduction. In rod cells, PDE is oligomeric, comprising an alpha-, a beta- and 2 gamma-subunits, while in cones, PDE is a homodimer of alpha chains, which are associated with several smaller subunits. Both rod and cone PDEs catalyse the hydrolysis of cAMP or cGMP to the corresponding nucleoside 5' monophosphates, both enzymes also binding cGMP with high affinity. The cGMP-binding sites are located in the N-terminal half of the protein sequence, while the catalytic core resides in the C-terminal portion. This entry represents the catalytic domain of PDE which is multihelical and can be divided into three subdomains.; GO: 0004114 3',5'-cyclic-nucleotide phosphodiesterase activity, 0007165 signal transduction; PDB: 3I8V_A 3TVX_A 2QYK_A 1ZKL_A 3G3N_A 4DFF_B 2OUS_B 3SNL_A 2OUY_A 2OUP_B ....
Probab=97.09 E-value=0.00015 Score=65.79 Aligned_cols=64 Identities=44% Similarity=0.690 Sum_probs=53.9
Q ss_pred hhhhhHHHHHHHHHhhcCchhhhcCCCCCCCCCCccccCCccccccccccccccccccccchhhhhch
Q psy14371 46 DDTLKVAELVSSEFFEQGDIERQELNITPIDIMNREKEDQLPLMQVGFIDSICLPIYESTQWWKIFGE 113 (286)
Q Consensus 46 ~e~~~~~~~i~~~F~~~g~lekf~i~Y~~~pyHN~~~~Ha~~v~Q~~f~~~~~~~l~~~~~l~~~l~~ 113 (286)
+-..+|+.+++++|+.||+.|+ ..+....|+.++.+. .++..|+||++++|.|++.. +..+++.
T Consensus 161 ~~~~kW~~~l~~Ef~~Qgd~E~-~~gl~~s~~~dr~~~-~~~~~Qi~Fi~~iv~Plf~~--l~~~~p~ 224 (237)
T PF00233_consen 161 DVAKKWAERLMEEFFRQGDLEK-ELGLPVSPLMDRDKT-NLAKSQIGFIDFIVKPLFEA--LAKLFPE 224 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HTTSSSCTTGSTTTG-GHHHHHHHHHHHTHHHHHHH--HHHHSTT
T ss_pred HHHHHHHHHHHHHHhhhhhHHH-HcCCCcccccCcccc-CcccCCCchhHHHHHHHHHH--HHHHCHH
Confidence 3457889999999999999999 455557799999853 78899999999999999987 5677776
No 7
>KOG3688|consensus
Probab=96.54 E-value=0.0017 Score=63.38 Aligned_cols=54 Identities=30% Similarity=0.471 Sum_probs=44.4
Q ss_pred hhhHHHHHHHHHhhcCchhh-hcCCCCCCCCCCccccCCccccccccccccccccccc
Q psy14371 48 TLKVAELVSSEFFEQGDIER-QELNITPIDIMNREKEDQLPLMQVGFIDSICLPIYES 104 (286)
Q Consensus 48 ~~~~~~~i~~~F~~~g~lek-f~i~Y~~~pyHN~~~~Ha~~v~Q~~f~~~~~~~l~~~ 104 (286)
-.+|...++++||+||+.|+ .+++|. ||++|... -+...|+|||++++-|.+..
T Consensus 377 H~rWT~~llEEFfrQGD~EaelGLPfS--PlcDR~st-~VAqsQigFIdfIVePt~tv 431 (554)
T KOG3688|consen 377 HHRWTMALLEEFFRQGDKEAELGLPFS--PLCDRKST-MVAQSQIGFIDFIVEPTFTV 431 (554)
T ss_pred HHHHHHHHHHHHHHccchHhhcCCCCC--cccCCcch-hhhhhhccceeeeecchHHH
Confidence 46889999999999999998 666775 99999732 35566999999999998765
No 8
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif
Probab=94.99 E-value=0.0067 Score=47.44 Aligned_cols=48 Identities=25% Similarity=0.302 Sum_probs=35.1
Q ss_pred CCccccCCccccccccccccccccccccchhhhhchHHHHHHHHHHHhccCCCCCCCCcc
Q psy14371 78 MNREKEDQLPLMQVGFIDSICLPIYESTQWWKIFGEIECLALLIACLCHDLDHRGTNNSF 137 (286)
Q Consensus 78 HN~~~~Ha~~v~Q~~f~~~~~~~l~~~~~l~~~l~~~e~lalliaal~HDvdH~G~nN~f 137 (286)
+++. |+..|.+ ++..+...... +..+...+++|||+||+|+.+..+.+
T Consensus 2 ~~~~--Hs~~v~~------~~~~~~~~~~~----~~~~~~~l~~aaLlHDig~~~~~~~~ 49 (145)
T cd00077 2 HRFE--HSLRVAQ------LARRLAEELGL----SEEDIELLRLAALLHDIGKPGTPDAI 49 (145)
T ss_pred chHH--HHHHHHH------HHHHHHHHhCc----CHHHHHHHHHHHHHHhcCCccCcccc
Confidence 5667 8888888 55444433211 45677889999999999999987765
No 9
>TIGR01353 dGTP_triPase deoxyguanosinetriphosphate triphosphohydrolase, putative. dGTP triphosphohydrolase (dgt) releases inorganic triphosphate, an unusual activity reaction product, from GTP. Its activity has been called limited to the Enterobacteriaceae, although homologous sequences are detected elsewhere. This finding casts doubt on whether the activity is shared in other species. In several of these other species, the homologous gene is found in an apparent operon with dnaG, the DNA primase gene. The enzyme from E. coli was shown to bind coopertatively to single stranded DNA. The biological role of dgt is unknown.
Probab=92.46 E-value=0.046 Score=53.21 Aligned_cols=55 Identities=16% Similarity=-0.010 Sum_probs=35.2
Q ss_pred CCCCccccCCccccccccccccccccccccchh--h--hhchHHHHHHHHHHHhccCCCCCCCCcc
Q psy14371 76 DIMNREKEDQLPLMQVGFIDSICLPIYESTQWW--K--IFGEIECLALLIACLCHDLDHRGTNNSF 137 (286)
Q Consensus 76 pyHN~~~~Ha~~v~Q~~f~~~~~~~l~~~~~l~--~--~l~~~e~lalliaal~HDvdH~G~nN~f 137 (286)
-+|+|.+ |++-|+| +...+....+.. . .......-.+..|||+||+|||.+.-..
T Consensus 35 ~~~tRlt-Hslev~~------i~r~~~~~l~~~~~~~~~~~~~~~~l~~~a~L~HDiGhpPfgH~g 93 (381)
T TIGR01353 35 FVRTRLT-HSLEVAQ------VGRSIANLIGLRYDLELEELGPFERLAETACLAHDIGNPPFGHAG 93 (381)
T ss_pred CCcCHhH-HHHHHHH------HHHHHHHHHhhhcccccccccccHHHHHHHHHHhcCCCCCCcccH
Confidence 6899987 9999999 555444432210 0 0111123345678999999999987655
No 10
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif. Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).
Probab=92.01 E-value=0.03 Score=42.87 Aligned_cols=48 Identities=31% Similarity=0.415 Sum_probs=33.3
Q ss_pred CCCCccccCCccccccccccccccccccccchhhhhchHHHHHHHHHHHhccCCCCCCCCcc
Q psy14371 76 DIMNREKEDQLPLMQVGFIDSICLPIYESTQWWKIFGEIECLALLIACLCHDLDHRGTNNSF 137 (286)
Q Consensus 76 pyHN~~~~Ha~~v~Q~~f~~~~~~~l~~~~~l~~~l~~~e~lalliaal~HDvdH~G~nN~f 137 (286)
+++.+. |+..|++ .+..+.+..+ ..+...+.+|||+||+|++...+.+
T Consensus 2 ~~~~~~--H~~~v~~------~~~~l~~~~~------~~~~~~~~~a~LlHDig~~~~~~~~ 49 (124)
T smart00471 2 DYHVFE--HSLRVAQ------LAAALAEELG------LLDIELLLLAALLHDIGKPGTPDSF 49 (124)
T ss_pred CchHHH--HHHHHHH------HHHHHHHHcC------hHHHHHHHHHHHHHcccCccCCHHH
Confidence 566777 8888888 5554443322 1344578899999999999876544
No 11
>COG0232 Dgt dGTP triphosphohydrolase [Nucleotide transport and metabolism]
Probab=91.98 E-value=0.056 Score=53.02 Aligned_cols=50 Identities=26% Similarity=0.155 Sum_probs=31.8
Q ss_pred CCCCccccCCccccccccccccccccccccchhhhhchHHHHHHHHHHHhccCCCCCCC
Q psy14371 76 DIMNREKEDQLPLMQVGFIDSICLPIYESTQWWKIFGEIECLALLIACLCHDLDHRGTN 134 (286)
Q Consensus 76 pyHN~~~~Ha~~v~Q~~f~~~~~~~l~~~~~l~~~l~~~e~lalliaal~HDvdH~G~n 134 (286)
-|.+|.+ |++.|.| +...+....++... .+.+-++- .+||+||+|||-+-
T Consensus 65 ~~RTRLT-HSLEVAQ------IgRsia~~l~~~~~-~~~~dL~E-~a~LaHDiGhPPFG 114 (412)
T COG0232 65 FYRTRLT-HSLEVAQ------IGRSIARELGLDLD-LPFEDLVE-TACLAHDIGHPPFG 114 (412)
T ss_pred cccccch-hhHHHHH------HHHHHHHHhccccC-CChHHHHH-HHHHHhcCCCCCCC
Confidence 6778877 9999999 55544444333212 22233322 47899999999864
No 12
>PRK01286 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=89.77 E-value=0.094 Score=50.24 Aligned_cols=66 Identities=17% Similarity=0.089 Sum_probs=39.8
Q ss_pred HHhhcCchhhhcCCCCC-CCCCCccccCCccccccccccccccccccccchhhhhchHHHHHHHHHHHhccCCCCCCCCc
Q psy14371 58 EFFEQGDIERQELNITP-IDIMNREKEDQLPLMQVGFIDSICLPIYESTQWWKIFGEIECLALLIACLCHDLDHRGTNNS 136 (286)
Q Consensus 58 ~F~~~g~lekf~i~Y~~-~pyHN~~~~Ha~~v~Q~~f~~~~~~~l~~~~~l~~~l~~~e~lalliaal~HDvdH~G~nN~ 136 (286)
.|.++...... ..+.. .-+|+|.. |++-|.| +...+....++.. + ..-.|||+||+|||.+.-.
T Consensus 41 ~frRL~~ktQv-~~~~~~dh~rtR~~-Hsl~V~~------iar~~~~~l~~~~-----~--l~~aaaL~HDiGh~PfgH~ 105 (336)
T PRK01286 41 AFRRLKHKTQV-FINPEGDHYRTRLT-HTLEVAQ------IARTIARALRLNE-----D--LTEAIALGHDLGHTPFGHA 105 (336)
T ss_pred HHHhhhcccee-cccCCCcccccHHH-HHHHHHH------HHHHHHHHhCCCH-----H--HHHHHHHHhcCCCCCCcch
Confidence 55554443332 12322 34567776 9999999 5555554432211 1 2335899999999998776
Q ss_pred cc
Q psy14371 137 FQ 138 (286)
Q Consensus 137 f~ 138 (286)
++
T Consensus 106 gE 107 (336)
T PRK01286 106 GE 107 (336)
T ss_pred HH
Confidence 63
No 13
>KOG2681|consensus
Probab=89.59 E-value=0.36 Score=47.59 Aligned_cols=80 Identities=18% Similarity=0.159 Sum_probs=49.4
Q ss_pred HHHhhcCchhhhcCCC--CCCCCCCccccCCcccccccccccccccccccc-chhhhhchHHHHHHHHHHHhccCCCCCC
Q psy14371 57 SEFFEQGDIERQELNI--TPIDIMNREKEDQLPLMQVGFIDSICLPIYEST-QWWKIFGEIECLALLIACLCHDLDHRGT 133 (286)
Q Consensus 57 ~~F~~~g~lekf~i~Y--~~~pyHN~~~~Ha~~v~Q~~f~~~~~~~l~~~~-~l~~~l~~~e~lalliaal~HDvdH~G~ 133 (286)
.+|.++.-+.++++.| -+..=|+|-- |..-|-- +.+...-.++.. +..-.+++.+..|.=+|||+||+||-.+
T Consensus 49 ~~FqRLr~vkQlGl~~~vyp~A~HsRfe-HsLG~~~---lA~~~v~~L~~~q~~El~It~~d~~~vqvA~LLHDIGHGPf 124 (498)
T KOG2681|consen 49 PLFQRLRHVKQLGLRYLVYPGANHSRFE-HSLGTYT---LAGILVNALNKNQCPELCITEVDLQAVQVAALLHDIGHGPF 124 (498)
T ss_pred HHHHHHHHHHHhCceeeeccCCccchhh-hhhhhHH---HHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHhhcCCCch
Confidence 3666665555555554 3446666652 6544333 111211122222 2334688999999999999999999999
Q ss_pred CCccccc
Q psy14371 134 NNSFQIN 140 (286)
Q Consensus 134 nN~f~~~ 140 (286)
+-.|.-.
T Consensus 125 SHmFe~~ 131 (498)
T KOG2681|consen 125 SHLFEGE 131 (498)
T ss_pred hhhhhhe
Confidence 9988654
No 14
>PRK03007 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=88.52 E-value=0.097 Score=51.74 Aligned_cols=48 Identities=21% Similarity=0.074 Sum_probs=33.6
Q ss_pred CCCCccccCCccccccccccccccccccccchhhhhchHHHHHHHHHHHhccCCCCCCCCcc
Q psy14371 76 DIMNREKEDQLPLMQVGFIDSICLPIYESTQWWKIFGEIECLALLIACLCHDLDHRGTNNSF 137 (286)
Q Consensus 76 pyHN~~~~Ha~~v~Q~~f~~~~~~~l~~~~~l~~~l~~~e~lalliaal~HDvdH~G~nN~f 137 (286)
-||++.+ |++-|.| +...+....++. + -..-.|||+||+|||.+.-..
T Consensus 67 f~~tRlt-Hslev~~------~~r~~~~~~~~~------~-~~~~~~~l~hd~GhpPfgH~g 114 (428)
T PRK03007 67 TPRTRLT-HSLEVAQ------IGRGIAAGLGCD------P-DLVDLAGLAHDIGHPPYGHNG 114 (428)
T ss_pred ccccHHH-HHHHHHH------HHHHHHHHhCCC------H-HHHHHHHHHhcCCCCCCcccH
Confidence 5788887 9999999 655555443321 1 134578999999999986544
No 15
>PRK01096 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=87.31 E-value=0.14 Score=50.92 Aligned_cols=72 Identities=14% Similarity=0.081 Sum_probs=39.9
Q ss_pred HHhhcCchhh-hcCCCCCCCCCCccccCCccccccccccccccccccccc--hhhh-----hchHHH-HHHHHHHHhccC
Q psy14371 58 EFFEQGDIER-QELNITPIDIMNREKEDQLPLMQVGFIDSICLPIYESTQ--WWKI-----FGEIEC-LALLIACLCHDL 128 (286)
Q Consensus 58 ~F~~~g~lek-f~i~Y~~~pyHN~~~~Ha~~v~Q~~f~~~~~~~l~~~~~--l~~~-----l~~~e~-lalliaal~HDv 128 (286)
.|.++..... |.+..+ --+|+|.+ |+.-|.| +...+....+ +... ....+. -.+-.|||+||+
T Consensus 40 ~frRL~~ktQVfp~~~~-d~~~tRlt-HsleV~~------i~r~i~~~l~~~l~~~~~~~~~~~~~~~~lv~aa~L~HDi 111 (440)
T PRK01096 40 SFRRLQRKTQVHPLAKN-DHIHTRLT-HSLEVSC------VGRSLGMRVGETLKEEKLPDWISPADIGAIVQSACLAHDI 111 (440)
T ss_pred HHhhhccCceeCcCCCC-CCCcCHhH-HHHHHHH------HHHHHHHHHHHHHhhhccccccccchHHHHHHHHHHHhcC
Confidence 4544443333 333333 35788887 9999999 5444433211 1110 011111 134678999999
Q ss_pred CCCCCCCcc
Q psy14371 129 DHRGTNNSF 137 (286)
Q Consensus 129 dH~G~nN~f 137 (286)
|||.+.-..
T Consensus 112 GhpPFgH~g 120 (440)
T PRK01096 112 GNPPFGHFG 120 (440)
T ss_pred CCCCCcccH
Confidence 999986655
No 16
>COG2206 c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]
Probab=87.26 E-value=0.97 Score=43.23 Aligned_cols=45 Identities=24% Similarity=0.288 Sum_probs=38.8
Q ss_pred hchHHHHHHHHHHHhccCCCCCCCCccccc--CCCHHHHHHHHHHHH
Q psy14371 111 FGEIECLALLIACLCHDLDHRGTNNSFQIN--NVSPDEYSRIIKVLE 155 (286)
Q Consensus 111 l~~~e~lalliaal~HDvdH~G~nN~f~~~--~L~~~~~~~~r~~ii 155 (286)
++.-++.-+.+||+.||+|--|.-+.-+.| .|+.+|+..+++-.+
T Consensus 169 l~~~~i~~l~~aalLHDIGKi~ip~~IL~K~g~Lt~eE~~~ik~H~~ 215 (344)
T COG2206 169 LSEEKIEELALAGLLHDIGKIGIPDSILNKPGKLTEEEFEIIKKHPI 215 (344)
T ss_pred CCHHHHHHHHHHHHHhhcccccCCHHHhCCCCCCCHHHHHHHHhchH
Confidence 677788899999999999999999988887 799999998875443
No 17
>COG1078 HD superfamily phosphohydrolases [General function prediction only]
Probab=87.17 E-value=0.36 Score=47.65 Aligned_cols=76 Identities=24% Similarity=0.260 Sum_probs=49.0
Q ss_pred HHHhhcCchhhhcCCC--CCCCCCCccccCCccccccccccccccccccccc--hhhhhchHHHHHHHHHHHhccCCCCC
Q psy14371 57 SEFFEQGDIERQELNI--TPIDIMNREKEDQLPLMQVGFIDSICLPIYESTQ--WWKIFGEIECLALLIACLCHDLDHRG 132 (286)
Q Consensus 57 ~~F~~~g~lekf~i~Y--~~~pyHN~~~~Ha~~v~Q~~f~~~~~~~l~~~~~--l~~~l~~~e~lalliaal~HDvdH~G 132 (286)
..|.++--+..+++.| .+-.=|.|- +|.+=|.+ ++.-++...+ .....++.+...+.+|||.||+||+.
T Consensus 27 ~~FQRLRrIkQLG~a~lvyPgAnHTRF-eHSLGV~~------la~~~~~~l~~~~~~~~~~~~~~~~~~AALLHDIGHgP 99 (421)
T COG1078 27 PEFQRLRRIKQLGLAYLVYPGANHTRF-EHSLGVYH------LARRLLEHLEKNSEEEIDEEERLLVRLAALLHDIGHGP 99 (421)
T ss_pred HHHHHHHHhhhccceeEecCCCccccc-chhhHHHH------HHHHHHHHHhhccccccchHHHHHHHHHHHHHccCCCc
Confidence 4777777666666654 222344433 18888888 5555554311 11234445566788999999999999
Q ss_pred CCCcccc
Q psy14371 133 TNNSFQI 139 (286)
Q Consensus 133 ~nN~f~~ 139 (286)
++-.|..
T Consensus 100 FSH~fE~ 106 (421)
T COG1078 100 FSHTFEY 106 (421)
T ss_pred cccchHH
Confidence 9998864
No 18
>PRK04926 dgt deoxyguanosinetriphosphate triphosphohydrolase; Provisional
Probab=85.78 E-value=0.25 Score=49.85 Aligned_cols=55 Identities=24% Similarity=0.262 Sum_probs=32.5
Q ss_pred CCCCCccccCCcccccccccccccccccccc-------------chhhhhchHHHHHHHHHHHhccCCCCCCCCcc
Q psy14371 75 IDIMNREKEDQLPLMQVGFIDSICLPIYEST-------------QWWKIFGEIECLALLIACLCHDLDHRGTNNSF 137 (286)
Q Consensus 75 ~pyHN~~~~Ha~~v~Q~~f~~~~~~~l~~~~-------------~l~~~l~~~e~lalliaal~HDvdH~G~nN~f 137 (286)
--+|+|.+ |++-|.|+| ..+.... ++.....+++ -.+-.|||+||+|||.+.-..
T Consensus 61 d~~rtRlt-HSleV~~i~------r~i~~~i~~~l~~~~~~~~~~~~~~~~~~~-~lveaa~L~HDiGhpPFGH~G 128 (503)
T PRK04926 61 AAVRSRLT-HSLEVQQVG------RYIAKEILSRLKEQKLLEAYGLDELTGPFE-SIVEMACLMHDIGNPPFGHFG 128 (503)
T ss_pred CCeeCHhH-HHHHHHHHH------HHHHHHHHHHhhhccccccccccccccchH-HHHHHHHHHhcCCCCCCcccH
Confidence 46899987 999999954 3222210 0000001111 123478999999999876544
No 19
>PRK05318 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=85.42 E-value=0.29 Score=48.52 Aligned_cols=70 Identities=16% Similarity=0.128 Sum_probs=40.6
Q ss_pred HHhhcCchhh-hcCCCCCCCCCCccccCCcccccccccccccccccccc------chhhhhchHHHHHHHHHHHhccCCC
Q psy14371 58 EFFEQGDIER-QELNITPIDIMNREKEDQLPLMQVGFIDSICLPIYEST------QWWKIFGEIECLALLIACLCHDLDH 130 (286)
Q Consensus 58 ~F~~~g~lek-f~i~Y~~~pyHN~~~~Ha~~v~Q~~f~~~~~~~l~~~~------~l~~~l~~~e~lalliaal~HDvdH 130 (286)
.|.++..... |.++..+ -+|+|.+ |++-|.| +...+.... ++...++ .+. .+-.|||+||+||
T Consensus 37 ~frRL~~ktQV~~~~~~d-~~~tRlt-Hslev~~------i~r~~~~~~~~~~~~~~~~~~~-~~~-l~~a~~L~HDiGh 106 (432)
T PRK05318 37 AFRRLQAKTQVLGVGEND-FYRTRLT-HSLEVAQ------IGTGIVAQLKKEKQPELKPLLP-SDS-LIESLCLAHDIGH 106 (432)
T ss_pred HHhhhcccceeCCCCCCC-CCcChhH-HHHHHHH------HHHHHHHHHhhccccccccccc-cHH-HHHHHHHHhcCCC
Confidence 5555544444 5555444 4588887 9999999 444443321 0111111 111 1246789999999
Q ss_pred CCCCCcc
Q psy14371 131 RGTNNSF 137 (286)
Q Consensus 131 ~G~nN~f 137 (286)
|.+.-..
T Consensus 107 pPfgH~g 113 (432)
T PRK05318 107 PPFGHGG 113 (432)
T ss_pred CCCcccH
Confidence 9987655
No 20
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity []. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria, archaea and eukaryotes. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; GO: 0008081 phosphoric diester hydrolase activity, 0046872 metal ion binding; PDB: 2CQZ_A 2Q14_C 3CCG_A 2PAU_A 2PAQ_B 2PAR_B 3BG2_A 3NQW_A 2QGS_B 2DQB_D ....
Probab=84.81 E-value=0.13 Score=39.78 Aligned_cols=53 Identities=19% Similarity=0.123 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHHHHHHHHhcchhhHHHHHH
Q psy14371 113 EIECLALLIACLCHDLDHRGTNNSFQINNVSPDEYSRIIKVLEEAILSTDLAVYFRQRG 171 (286)
Q Consensus 113 ~~e~lalliaal~HDvdH~G~nN~f~~~~L~~~~~~~~r~~ii~~ILATDMa~Hf~~~~ 171 (286)
+.+...+.+||++||+|+......+... ...........+.+..+...+....
T Consensus 22 ~~~~~~l~~aaLlHDiGk~~~~~~~~~~------~~~~~~~~~H~~~g~~~~~~~~~~~ 74 (122)
T PF01966_consen 22 EEDRELLRIAALLHDIGKIPTPDFIEKK------PEERGKFYRHEEIGAEILKEFLKEL 74 (122)
T ss_dssp HHHHHHHHHHHHHTTTTHHSTHHHHHHH------HHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhcCCCCCchHHHHh------HhhhchhhhhHHHHHHHHHHhhhhc
Confidence 5678889999999999988753211110 0013344455556665555554444
No 21
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=69.54 E-value=34 Score=36.95 Aligned_cols=15 Identities=40% Similarity=0.516 Sum_probs=12.6
Q ss_pred HHHHHHHHHhccCCC
Q psy14371 116 CLALLIACLCHDLDH 130 (286)
Q Consensus 116 ~lalliaal~HDvdH 130 (286)
...+.+|||+||+|-
T Consensus 473 ~~~L~lAaLlHDIGK 487 (854)
T PRK01759 473 RTLLYIAALFHDIAK 487 (854)
T ss_pred HHHHHHHHHHHhhcC
Confidence 356789999999986
No 22
>PRK05092 PII uridylyl-transferase; Provisional
Probab=69.48 E-value=50 Score=35.93 Aligned_cols=39 Identities=28% Similarity=0.435 Sum_probs=24.4
Q ss_pred HHHHHHHHhccCCCCCCCCccccc------------CCCHHHHHHHHHHHHH
Q psy14371 117 LALLIACLCHDLDHRGTNNSFQIN------------NVSPDEYSRIIKVLEE 156 (286)
Q Consensus 117 lalliaal~HDvdH~G~nN~f~~~------------~L~~~~~~~~r~~ii~ 156 (286)
..+++|||+||+|.....+ -... +|+.++.+.+..+|..
T Consensus 531 ~~L~lAaLlHDIGKg~~~d-Hs~~Ga~~a~~~~~rl~l~~~~~~~v~~LV~~ 581 (931)
T PRK05092 531 RALYVAVLLHDIAKGRPED-HSIAGARIARRLCPRLGLSPAETETVAWLVEH 581 (931)
T ss_pred HHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4689999999999743211 0000 5676676666666654
No 23
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=64.29 E-value=46 Score=36.17 Aligned_cols=38 Identities=18% Similarity=0.230 Sum_probs=24.5
Q ss_pred HHHHHHHhccCCCCCCCCccccc------------CCCHHHHHHHHHHHHH
Q psy14371 118 ALLIACLCHDLDHRGTNNSFQIN------------NVSPDEYSRIIKVLEE 156 (286)
Q Consensus 118 alliaal~HDvdH~G~nN~f~~~------------~L~~~~~~~~r~~ii~ 156 (286)
.|.+|||.||+|-+...+ -... +++.++.+.+..+|..
T Consensus 499 lL~lAaLlHDIGKg~~~~-Hs~~Ga~~a~~i~~rl~l~~~~~~~v~~LV~~ 548 (895)
T PRK00275 499 LLYIAGLYHDIGKGRGGD-HSELGAVDAEAFCQRHQLPAWDTRLVVWLVEN 548 (895)
T ss_pred HHHHHHHHHhhhcCCCCC-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 678999999998654221 1000 6777777777666654
No 24
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=62.98 E-value=46 Score=35.74 Aligned_cols=16 Identities=31% Similarity=0.382 Sum_probs=13.5
Q ss_pred HHHHHHHHHhccCCCC
Q psy14371 116 CLALLIACLCHDLDHR 131 (286)
Q Consensus 116 ~lalliaal~HDvdH~ 131 (286)
...+.+|||+||+|.+
T Consensus 465 ~~~L~lAaLlHDiGKg 480 (850)
T TIGR01693 465 PELLYLAALLHDIGKG 480 (850)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 4568999999999974
No 25
>KOG1229|consensus
Probab=61.92 E-value=6.2 Score=39.37 Aligned_cols=54 Identities=30% Similarity=0.556 Sum_probs=40.0
Q ss_pred hhhHHHHHHHHHhhcCchhhh-cCCCCCCCCCCccccCCcccccccccccccccccc
Q psy14371 48 TLKVAELVSSEFFEQGDIERQ-ELNITPIDIMNREKEDQLPLMQVGFIDSICLPIYE 103 (286)
Q Consensus 48 ~~~~~~~i~~~F~~~g~lekf-~i~Y~~~pyHN~~~~Ha~~v~Q~~f~~~~~~~l~~ 103 (286)
...|+.+|.++||.|..-||- +++... |..++.++ .+|..|.|||+++..-.+.
T Consensus 682 CieWAgRIsEEYFaQTdEEK~kGLPV~M-~VFDRNTC-niP~sQ~~FID~F~~d~F~ 736 (775)
T KOG1229|consen 682 CIEWAGRISEEYFAQTDEEKEKGLPVTM-EVFDRNTC-NIPISQCGFIDMFARDAFA 736 (775)
T ss_pred HHHHHhHHHHHHHHhhhHHHhcCCceee-eeecCCcc-CCchhhhhHHHHHHHHHHH
Confidence 467899999999999988873 456554 55566654 8999999999876554443
No 26
>PRK10119 putative hydrolase; Provisional
Probab=54.73 E-value=5.7 Score=36.16 Aligned_cols=41 Identities=15% Similarity=0.206 Sum_probs=29.4
Q ss_pred CCCCCccccCCccccccccccccccccccccchhhhhchHHHHHHHHHHHhccCCC
Q psy14371 75 IDIMNREKEDQLPLMQVGFIDSICLPIYESTQWWKIFGEIECLALLIACLCHDLDH 130 (286)
Q Consensus 75 ~pyHN~~~~Ha~~v~Q~~f~~~~~~~l~~~~~l~~~l~~~e~lalliaal~HDvdH 130 (286)
-++||+. |..-|.. .+..+.... +.+...+.+||+.||++.
T Consensus 22 ~~~HD~~--Hi~RV~~------lA~~Ia~~e-------~~D~~vv~lAAlLHDv~d 62 (231)
T PRK10119 22 DAAHDIC--HFRRVWA------TAQKLAADD-------DVDMLVVLTACYFHDIVS 62 (231)
T ss_pred CCccChH--HHHHHHH------HHHHHHHhc-------CCCHHHHHHHHHHhhcch
Confidence 5999999 9888887 444443322 224567779999999975
No 27
>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein. This small clade of proteins are found adjacent to other genes implicated in the catabolism of phosphonates. They are members of the TIGR00277 domain family and contain a series of five invariant histidines (the domain in general has only four).
Probab=54.37 E-value=6.1 Score=34.64 Aligned_cols=14 Identities=36% Similarity=0.731 Sum_probs=12.3
Q ss_pred HHHHHHHhccCCCC
Q psy14371 118 ALLIACLCHDLDHR 131 (286)
Q Consensus 118 alliaal~HDvdH~ 131 (286)
.+++|||.||+||.
T Consensus 45 elvvAALLHDIGhl 58 (179)
T TIGR03276 45 ELIVAAFLHDIGHL 58 (179)
T ss_pred HHHHHHHHHhcchh
Confidence 56899999999995
No 28
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=54.30 E-value=44 Score=35.28 Aligned_cols=39 Identities=15% Similarity=0.204 Sum_probs=22.7
Q ss_pred HHHHHHHhccCCCCC-CCCccccc----------CCCHHHHHHHHHHHHH
Q psy14371 118 ALLIACLCHDLDHRG-TNNSFQIN----------NVSPDEYSRIIKVLEE 156 (286)
Q Consensus 118 alliaal~HDvdH~G-~nN~f~~~----------~L~~~~~~~~r~~ii~ 156 (286)
.+++|||+||+|-+. .++.-.=. .++.++.+.+..+|..
T Consensus 404 lL~LAALlHDIGKg~g~dHs~~GA~~A~~i~~RLgl~~~~~e~V~~LV~~ 453 (693)
T PRK00227 404 LLLLGALYHDIGKGYPRPHEQVGAEMVARAARRMGLNLRDRAVVQTLVAE 453 (693)
T ss_pred HHHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHcCcCHHHHHHHHHHHHH
Confidence 457999999999763 21111000 5666666665555543
No 29
>PRK05007 PII uridylyl-transferase; Provisional
Probab=50.19 E-value=40 Score=36.56 Aligned_cols=16 Identities=38% Similarity=0.515 Sum_probs=13.0
Q ss_pred HHHHHHHHhccCCCCC
Q psy14371 117 LALLIACLCHDLDHRG 132 (286)
Q Consensus 117 lalliaal~HDvdH~G 132 (286)
..+.+|||+||+|-+.
T Consensus 499 ~lL~lAaLlHDIGKg~ 514 (884)
T PRK05007 499 ELLLLAALFHDIAKGR 514 (884)
T ss_pred hHHHHHHHHHhhcCCC
Confidence 4678999999998643
No 30
>PRK03059 PII uridylyl-transferase; Provisional
Probab=46.80 E-value=72 Score=34.50 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=13.6
Q ss_pred HHHHHHHHHhccCCCCC
Q psy14371 116 CLALLIACLCHDLDHRG 132 (286)
Q Consensus 116 ~lalliaal~HDvdH~G 132 (286)
...+++|||.||+|-+.
T Consensus 477 ~~lL~LAaLlHDIGKg~ 493 (856)
T PRK03059 477 PWLLYVAALFHDIAKGR 493 (856)
T ss_pred hhHHHHHHHHHhhccCC
Confidence 35678999999998754
No 31
>COG4341 Predicted HD phosphohydrolase [General function prediction only]
Probab=46.12 E-value=7.9 Score=33.63 Aligned_cols=15 Identities=47% Similarity=0.583 Sum_probs=13.1
Q ss_pred HHHHHHHhccCCCCC
Q psy14371 118 ALLIACLCHDLDHRG 132 (286)
Q Consensus 118 alliaal~HDvdH~G 132 (286)
+++.|||.||+||--
T Consensus 50 ~lVaaALLHDiGhl~ 64 (186)
T COG4341 50 ALVAAALLHDIGHLY 64 (186)
T ss_pred HHHHHHHHHhHHHHh
Confidence 788999999999854
No 32
>PRK04374 PII uridylyl-transferase; Provisional
Probab=43.68 E-value=2.5e+02 Score=30.54 Aligned_cols=39 Identities=23% Similarity=0.241 Sum_probs=23.0
Q ss_pred HHHHHHHhccCCCCCCC-Cccccc----------CCCHHHHHHHHHHHHH
Q psy14371 118 ALLIACLCHDLDHRGTN-NSFQIN----------NVSPDEYSRIIKVLEE 156 (286)
Q Consensus 118 alliaal~HDvdH~G~n-N~f~~~----------~L~~~~~~~~r~~ii~ 156 (286)
.|.+|||+||+|-+... +.-.=. +++.++.+.+..+|..
T Consensus 488 lL~lAaLlHDIGKg~~~dHs~~Ga~~a~~i~~Rl~l~~~~~~~v~~LV~~ 537 (869)
T PRK04374 488 LLLLAGLFHDIAKGRGGDHSELGAVDARAFCLAHRLSEGDTELVTWLVEQ 537 (869)
T ss_pred HHHHHHHHHhccCCCCCChHHHhHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 57899999999864321 100000 5666666666666643
No 33
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=35.91 E-value=51 Score=31.36 Aligned_cols=33 Identities=9% Similarity=-0.052 Sum_probs=22.5
Q ss_pred HHHHhhhhccCcCCCCChHHHHHHHHHHccChH
Q psy14371 222 LRGMTMTVCDLAAITKPWHVEKRAFAELSDKLE 254 (286)
Q Consensus 222 l~~~ii~~aDisn~~kp~~v~~k~~a~~~p~~~ 254 (286)
.+..+++.||.-.+.|+++.........+-.+.
T Consensus 295 ~l~~iV~lAD~l~~~R~~~~~~~~~~~~~~~l~ 327 (342)
T PRK07152 295 TLDKIVYVADKIEPGRKYIGIQKLRKLAFKDLD 327 (342)
T ss_pred HHHHHHHhhhhcccCCCCCCHHHHHHHHHhHHH
Confidence 367889999999999999766653333333444
No 34
>TIGR00277 HDIG uncharacterized domain HDIG. This domain is found in a few known nucleotidyltransferes and in a large number of uncharacterized proteins. It contains four widely separated His residues, the second of which is part of an invariant dipeptide His-Asp in a region matched approximately by the motif HDIG.
Probab=34.14 E-value=25 Score=24.77 Aligned_cols=16 Identities=25% Similarity=0.164 Sum_probs=13.4
Q ss_pred HHHHHHHhccCCCCCC
Q psy14371 118 ALLIACLCHDLDHRGT 133 (286)
Q Consensus 118 alliaal~HDvdH~G~ 133 (286)
.+.+||++||+|-+..
T Consensus 29 ~l~~AalLHDiG~~~~ 44 (80)
T TIGR00277 29 LARRGALLHDIGKPIT 44 (80)
T ss_pred HHHHHHHHHccCCccc
Confidence 4779999999998764
No 35
>PRK03381 PII uridylyl-transferase; Provisional
Probab=29.58 E-value=79 Score=33.79 Aligned_cols=14 Identities=36% Similarity=0.627 Sum_probs=11.6
Q ss_pred HHHHHHHhccCCCC
Q psy14371 118 ALLIACLCHDLDHR 131 (286)
Q Consensus 118 alliaal~HDvdH~ 131 (286)
.+.+|||+||+|-+
T Consensus 444 lL~lAaLlHDiGKg 457 (774)
T PRK03381 444 LLLLGALLHDIGKG 457 (774)
T ss_pred HHHHHHHHHhhcCC
Confidence 35899999999864
No 36
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=25.44 E-value=4.8e+02 Score=28.39 Aligned_cols=43 Identities=26% Similarity=0.380 Sum_probs=26.3
Q ss_pred HHHHHHHHhccCCC-CCCCCccccc----------CCCHHHHHHHHHHHHHHHH
Q psy14371 117 LALLIACLCHDLDH-RGTNNSFQIN----------NVSPDEYSRIIKVLEEAIL 159 (286)
Q Consensus 117 lalliaal~HDvdH-~G~nN~f~~~----------~L~~~~~~~~r~~ii~~IL 159 (286)
-.|++|||-||++- +|-.-+..=. .|++.|.+.+--+|.+=-|
T Consensus 484 elLylAaLfHDIaKGRggDHs~lGA~~a~~fc~~hGL~~~e~~lvaWLVe~HLl 537 (867)
T COG2844 484 ELLYLAALFHDIAKGRGGDHSILGAEDARRFCERHGLNSRETELVAWLVENHLL 537 (867)
T ss_pred hHHHHHHHHHHhhcCCCCchHHhhHHHHHHHHHHcCCCHHHhHHHHHHHHHHHH
Confidence 47899999999982 1222211111 6777777777666665433
No 37
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=23.83 E-value=1.8e+02 Score=28.40 Aligned_cols=42 Identities=17% Similarity=0.248 Sum_probs=34.1
Q ss_pred hchHHHHHHHHHHHhccCCCCCCCCccccc--CCCHHHHHHHHH
Q psy14371 111 FGEIECLALLIACLCHDLDHRGTNNSFQIN--NVSPDEYSRIIK 152 (286)
Q Consensus 111 l~~~e~lalliaal~HDvdH~G~nN~f~~~--~L~~~~~~~~r~ 152 (286)
++.-++=-+..||..||+|--|..-..+.| .|+++++..+|.
T Consensus 206 Lse~~v~~i~~AapLHDIGKvaiPD~ILlKpg~Lt~ee~~imk~ 249 (360)
T COG3437 206 LSEEEVDLIKKAAPLHDIGKVAIPDSILLKPGKLTSEEFEIMKG 249 (360)
T ss_pred CCHHHHHHHHhccchhhcccccCChHHhcCCCCCCHHHHHHHhc
Confidence 455555567789999999999988777776 799999998874
No 38
>PF10295 DUF2406: Uncharacterised protein (DUF2406); InterPro: IPR018809 This entry represents a family of small proteins conserved in fungi. The function is not known.
Probab=23.34 E-value=38 Score=25.16 Aligned_cols=15 Identities=27% Similarity=0.220 Sum_probs=12.0
Q ss_pred HHhhhhccCcCCCCC
Q psy14371 224 GMTMTVCDLAAITKP 238 (286)
Q Consensus 224 ~~ii~~aDisn~~kp 238 (286)
+-.|.--|+|||+|+
T Consensus 37 G~~I~~PD~SNPTR~ 51 (69)
T PF10295_consen 37 GNPITDPDRSNPTRS 51 (69)
T ss_pred CCccCCCCCCCCCcc
Confidence 445667999999997
No 39
>PF07514 TraI_2: Putative helicase; InterPro: IPR011119 The members of this family are restricted to the proteobacteria. Some members have been annotated as helicase, conjugative relaxase or nickase. The majority contain an HD domain, which is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria.
Probab=22.81 E-value=47 Score=31.71 Aligned_cols=17 Identities=35% Similarity=0.370 Sum_probs=14.6
Q ss_pred HHHHHHHHHhccCCCCC
Q psy14371 116 CLALLIACLCHDLDHRG 132 (286)
Q Consensus 116 ~lalliaal~HDvdH~G 132 (286)
..|.++||||||++-|-
T Consensus 104 ~~avf~AALlhdlgk~l 120 (327)
T PF07514_consen 104 RYAVFYAALLHDLGKPL 120 (327)
T ss_pred HHHHHHHHHHhccCcce
Confidence 47899999999999754
No 40
>TIGR03760 ICE_TraI_Pfluor integrating conjugative element relaxase, PFL_4751 family. Members of this protein family are the TraI putative relaxases required for transfer by a subclass of integrating conjugative elements (ICE) as found in Pseudomonas fluorescens Pf-5, and understood from study of two related ICE, SXT and R391. This model represents the N-terminal domain. Note that no homology is detected to the similarly named TraI relaxase of the F plasmid.
Probab=22.66 E-value=38 Score=30.46 Aligned_cols=15 Identities=40% Similarity=0.510 Sum_probs=13.6
Q ss_pred HHHHHHHHhccCCCC
Q psy14371 117 LALLIACLCHDLDHR 131 (286)
Q Consensus 117 lalliaal~HDvdH~ 131 (286)
.++++|||+||+|.+
T Consensus 106 ~~~~~aaLlHDlgK~ 120 (218)
T TIGR03760 106 AAVFYAALLHDLGKL 120 (218)
T ss_pred HHHHHHHHHHhhhhh
Confidence 589999999999987
Done!