RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy14371
         (286 letters)



>gnl|CDD|109297 pfam00233, PDEase_I, 3'5'-cyclic nucleotide phosphodiesterase. 
          Length = 237

 Score = 78.6 bits (194), Expect = 3e-17
 Identities = 41/170 (24%), Positives = 66/170 (38%), Gaps = 67/170 (39%)

Query: 111 FGEIECLALLIACLCHDLDHRGTNNSFQIN------------------------------ 140
             ++E LALL A   HD+DHRGTNNSFQIN                              
Sbjct: 27  LTDLEILALLFAAAIHDVDHRGTNNSFQINSKSELAILYNDESVLENHHLAQAFKLLQDE 86

Query: 141 ------NVSPDEYSRIIKVLEEAILSTDLAVYFRQRGSFLSLVKGGSLAWHREADRDLAV 194
                 N+S  ++  +  ++ E IL+TD++++F++     ++V+       +  D D   
Sbjct: 87  ECNIFQNLSKKDFQTLRDLVIEMILATDMSLHFQKLKDLKTMVEQK-----KRLDLD--- 138

Query: 195 YFRQRGSFLSLVKGGSLAWHREADRGLLRGMTMTVCDLAAITKPWHVEKR 244
                                   + LL  + M   DL+  TKPW + +R
Sbjct: 139 -----------------------HKILLLSLLMHAADLSNPTKPWKLHRR 165



 Score = 53.6 bits (129), Expect = 2e-08
 Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 2/54 (3%)

Query: 50  KVAELVSSEFFEQGDIERQELNITPIDIMNREKEDQLPLMQVGFIDSICLPIYE 103
           + AEL+  EFF+QGD+ER EL + P  + +R     +P  QVGFID I  PI++
Sbjct: 165 RWAELIMEEFFDQGDLER-ELGLPPSPMCDRTSA-YVPKSQVGFIDFIVEPIFK 216


>gnl|CDD|238032 cd00077, HDc, Metal dependent phosphohydrolases with conserved 'HD'
           motif.
          Length = 145

 Score = 34.2 bits (78), Expect = 0.027
 Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 14/82 (17%)

Query: 113 EIECLALLIACLCHDLDHRGTNNSFQINN--------------VSPDEYSRIIKVLEEAI 158
           E +   L +A L HD+   GT ++                   +       +IK+++E I
Sbjct: 25  EEDIELLRLAALLHDIGKPGTPDAITEEESELEKDHAIVGAEILRELLLEEVIKLIDELI 84

Query: 159 LSTDLAVYFRQRGSFLSLVKGG 180
           L+ D + + R  G        G
Sbjct: 85  LAVDASHHERLDGLGYPDGLKG 106


>gnl|CDD|214679 smart00471, HDc, Metal dependent phosphohydrolases with conserved
           'HD' motif.  Includes eukaryotic cyclic nucleotide
           phosphodiesterases (PDEc). This profile/HMM does not
           detect HD homologues in bacterial glycine aminoacyl-tRNA
           synthetases (beta subunit).
          Length = 124

 Score = 33.8 bits (77), Expect = 0.033
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 109 KIFGEIECLALLIACLCHDLDHRGTNNSFQIN 140
           +  G ++   LL+A L HD+   GT +SF + 
Sbjct: 21  EELGLLDIELLLLAALLHDIGKPGTPDSFLVK 52


>gnl|CDD|177427 PHA02602, 56, dCTP pyrophosphatase; Provisional.
          Length = 172

 Score = 28.9 bits (65), Expect = 2.3
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 7/46 (15%)

Query: 222 LRGMTMTVCDLAAITKPW---HVEKRA--FAELS--DKLEPLVEGV 260
           L GM+    D +A+ KPW   H E R   F++LS  D+LE   E +
Sbjct: 88  LGGMSNGEKDASAVWKPWKANHGEARNRLFSDLSPEDQLEIKFELI 133


>gnl|CDD|222937 PHA02864, PHA02864, hypothetical protein; Provisional.
          Length = 240

 Score = 27.9 bits (62), Expect = 4.9
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 1   MNYDVIAYGSVYRDVKLHDLPSLRVPSAAKLNLHDFKFDDI 41
           M YD IA    Y+D+   D+ + ++ +  K+N+++    DI
Sbjct: 150 MKYDEIAKKQYYKDIH-KDINNFKLNNKYKINIYEKFNGDI 189


>gnl|CDD|184712 PRK14501, PRK14501, putative bifunctional trehalose-6-phosphate
           synthase/HAD hydrolase subfamily IIB; Provisional.
          Length = 726

 Score = 28.0 bits (63), Expect = 7.5
 Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 11/70 (15%)

Query: 126 HDLDHRGTNNSFQINNVSPDEY-SRIIKVLEEAILSTDLAVYFRQRGSFLSLVKGGSLAW 184
           H    R     +Q+      E+   +  +LEE     D     R  GSF+   K  SLAW
Sbjct: 560 HGAWSRAPGGEWQLLEPVATEWKDAVRPILEEF---VD-----RTPGSFIE-EKEASLAW 610

Query: 185 H-READRDLA 193
           H R AD +L 
Sbjct: 611 HYRNADPELG 620


>gnl|CDD|203252 pfam05448, AXE1, Acetyl xylan esterase (AXE1).  This family
           consists of several bacterial acetyl xylan esterase
           proteins. Acetyl xylan esterases are enzymes that
           hydrolyse the ester linkages of the acetyl groups in
           position 2 and/or 3 of the xylose moieties of natural
           acetylated xylan from hardwood. These enzymes are one of
           the accessory enzymes which are part of the xylanolytic
           system, together with xylanases, beta-xylosidases,
           alpha-arabinofuranosidases and methylglucuronidases;
           these are all required for the complete hydrolysis of
           xylan.
          Length = 319

 Score = 27.3 bits (61), Expect = 9.3
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 5/43 (11%)

Query: 75  IDIMNREKEDQLP-LMQVGFIDSICLPIYESTQWWKIFGEIEC 116
           IDI N     + P LM VG +D +C P   ST  +  +  +  
Sbjct: 251 IDIKNLAHRIKGPVLMSVGLMDQVCPP---STV-FAAYNHLTT 289


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.321    0.137    0.414 

Gapped
Lambda     K      H
   0.267   0.0564    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,846,560
Number of extensions: 1449973
Number of successful extensions: 1215
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1214
Number of HSP's successfully gapped: 20
Length of query: 286
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 190
Effective length of database: 6,679,618
Effective search space: 1269127420
Effective search space used: 1269127420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.5 bits)