RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14371
(286 letters)
>1tbf_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5A, hydrolase;
HET: VIA; 1.30A {Homo sapiens} SCOP: a.211.1.2 PDB:
1t9s_A* 1xoz_A* 1xp0_A* 2chm_A* 3tge_A* 3tgg_A* 3hc8_A*
3hdz_A* 1t9r_A* 3sie_A* 3shy_A* 3shz_A* 3b2r_A* 2h44_A*
2h42_A* 2h40_A* 1rkp_A* 1udt_A* 1udu_A* 1uho_A* ...
Length = 347
Score = 117 bits (295), Expect = 5e-31
Identities = 74/379 (19%), Positives = 118/379 (31%), Gaps = 158/379 (41%)
Query: 4 DVIAYGSVYRDVKLHDLPSLRVPSAAKLNLHDFKFDDIHMEDDDTLKVAELVSSEFFEQG 63
+L L + VPSA L + DF F D + D +T + F +
Sbjct: 15 VPRGSHMEEETRELQSLAAAVVPSAQTLKITDFSFSDFELSDLETALCTIRM---FTDLN 71
Query: 64 DIERQELNITPIDIMNREKEDQLPLMQVGFIDSI----------------------CLPI 101
++ + + +I S+
Sbjct: 72 LVQN--FQMKHEVLCR-------------WILSVKKNYRKNVAYHNWRHAFNTAQCMFAA 116
Query: 102 YESTQWWKIFGEIECLALLIACLCHDLDHRGTNNSFQIN--------------------- 140
++ + ++E LALLIA L HDLDH G +N F IN
Sbjct: 117 LKAGKIQNKLTDLEILALLIAALSHDLDHPGVSNQFLINTNSELALMYNDESVLEHHHFD 176
Query: 141 ---------------NVSPDEYSRIIKVLEEAILSTDLAVYFRQRGSFLSLVKGGSLAWH 185
+S +EY +K++++AIL+TDLA+Y ++RG F L++
Sbjct: 177 QCLMILNSPGNQILSGLSIEEYKTTLKIIKQAILATDLALYIKRRGEFFELIRKNQFNLE 236
Query: 186 READRDLAVYFRQRGSFLSLVKGGSLAWHREADRGLLRGMTMTVCDLAAITKPWHVEKR- 244
++L M MT CDL+AITKPW +++R
Sbjct: 237 DPHQKEL-----------------------------FLAMLMTACDLSAITKPWPIQQRI 267
Query: 245 ----------------------------------------------------AFAELSDK 252
A +S+
Sbjct: 268 AELVATEFFDQGDRERKELNIEPTDLMNREKKNKIPSMQVGFIDAICLQLYEALTHVSED 327
Query: 253 LEPLVEGVRSNKQHWLEIA 271
PL++G R N+Q W +A
Sbjct: 328 CFPLLDGCRKNRQKWQALA 346
>3v93_A Cyclic nucleotide specific phosphodiesterase; parasite,
phosphodiesterases,, hydrolase; 2.00A {Trypanosoma
cruzi} PDB: 3v94_A*
Length = 345
Score = 115 bits (289), Expect = 4e-30
Identities = 39/360 (10%), Positives = 86/360 (23%), Gaps = 131/360 (36%)
Query: 10 SVYRDVKLHDLPSLRVPSAAKL-NLHDFKFDDIHMEDDDTLKVAELVSSEFFEQGDIERQ 68
S+ +D L +P + +L D+ FD + + + Q
Sbjct: 17 SIVQDTILAVVPPKSCAAIGTDVDLRDWGFDTFEVASRVPSVLQSVAMHVALAWDFFASQ 76
Query: 69 ELNITPIDIMNREKED--QLP---------LMQVGFIDSICLPIYESTQWWKIFGEIECL 117
E ++ + + P ++Q F L + + + +EC
Sbjct: 77 EEAQKWAFLVAAVENNYRPNPYHNAIHAADVLQGTF----SL-VSAAKPLMEHLTPLECK 131
Query: 118 ALLIACLCHDLDHRGTNNSFQIN------------------------------------N 141
A A L HD+ H G N+F +
Sbjct: 132 AAAFAALTHDVCHPGRTNAFLAAVQDPVSFKFSGKGTLEQLHTATAFELLNVTEFDFTSS 191
Query: 142 VSPDEYSRIIKVLEEAILSTDLAVYFRQRGSFLSLVKGGSLAWHREADRDLAVYFRQRGS 201
+ + ++ I TD++++ + + G + DR
Sbjct: 192 MDNASFLEFKNIVSHLIGHTDMSLHSETVAKHGAKLSAGGFDCTCKEDRLE--------- 242
Query: 202 FLSLVKGGSLAWHREADRGLLRGMTMTVCDLAAITKPWHV-----------------EKR 244
+ + D+ A ++ + E+R
Sbjct: 243 --------------------ALSLLLHAADIGASSRGVAIARKWLVILQEFADQAEDERR 282
Query: 245 --------------------------------AFAELSDKLEPLVEGVRSNKQHWLEIAA 272
+L +E + +R ++ + A
Sbjct: 283 RGLPVTPGFETPSSVEKSQIPFLDFFVIPTFDLLHQLFPSIEEPLHNLRKLRELYAAKAG 342
>2our_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A;
PDE10, substrate specificity, hydrolase; HET: CMP; 1.45A
{Homo sapiens} PDB: 2ous_A 2ouu_A* 3sn7_A* 3sni_A*
3snl_A* 4dff_A* 2wey_A* 2oun_A* 2oup_A 2ouq_A* 2ouv_A
2ouy_A* 4ael_A* 2y0j_A* 4ddl_A* 3uuo_A* 3ui7_A* 2o8h_A*
2ovv_A* 2ovy_A* ...
Length = 331
Score = 114 bits (287), Expect = 6e-30
Identities = 62/364 (17%), Positives = 111/364 (30%), Gaps = 126/364 (34%)
Query: 7 AYGSVYRDVKLHDLPSLRVPSAAKLNLHDFKFDDIHMEDDDTLKVAELVSSEFFEQGDIE 66
++ S+ + L +P + F FD I ++ + + E
Sbjct: 1 SHMSICTSEEWQGLMQFTLPVRLCKEIELFHFD-IGPFENMWPGIFVYMVHRSCGTSCFE 59
Query: 67 RQELNITPIDIMNREKE----DQLPLMQVGFIDSICLPIYESTQWWKIFGEIECLALLIA 122
++L + + + + + V L +F ++E LLIA
Sbjct: 60 LEKLCRFIMSVKKNYRRVPYHNWKHAVTVAHCMYAILQNNH-----TLFTDLERKGLLIA 114
Query: 123 CLCHDLDHRGTNNSFQIN-----------------------------------NVSPDEY 147
CLCHDLDHRG +NS+ +S EY
Sbjct: 115 CLCHDLDHRGFSNSYLQKFDHPLAALYSTSTMEQHHFSQTVSILQLEGHNIFSTLSSSEY 174
Query: 148 SRIIKVLEEAILSTDLAVYFRQRGSFLSLVKGGSLAWHREADRDLAVYFRQRGSFLSLVK 207
++++++ +AI++TDLA+YF R + + GSL + ++ RD
Sbjct: 175 EQVLEIIRKAIIATDLALYFGNRKQLEEMYQTGSLNLNNQSHRD---------------- 218
Query: 208 GGSLAWHREADRGLLRGMTMTVCDLAAITKPWHVEKR----------------------- 244
+ G+ MT C L ++TK W V K
Sbjct: 219 -------------RVIGLMMTACALCSVTKLWPVTKLTANDIYAEFWAEGDEMKKLGIQP 265
Query: 245 -----------------------------AFAELSDKLEPLVEGVRSNKQHWLEIAAEKR 275
++ EPL++ R N W ++ +
Sbjct: 266 IPMMDRDKKDEVPQGQLGFYNAVAIPCYTTLTQILPPTEPLLKACRDNLSQWEKVIRGEE 325
Query: 276 KQDE 279
Sbjct: 326 TATW 329
>1zkl_A HCP1, TM22, high-affinity CAMP-specific 3',5'-cyclic
phosphodiesterase 7A; PDE, hydrolase; HET: IBM; 1.67A
{Homo sapiens} PDB: 3g3n_A*
Length = 353
Score = 112 bits (282), Expect = 3e-29
Identities = 35/273 (12%), Positives = 64/273 (23%), Gaps = 116/273 (42%)
Query: 101 IYESTQWWKIFGEIECLALLIACLCHDLDHRGTNNSFQIN-------------------- 140
+ + + L LIA HDLDH G N F I
Sbjct: 98 YLKEPKLANSVTPWDILLSLIAAATHDLDHPGVNQPFLIKTNHYLATLYKNTSVLENHHW 157
Query: 141 --------------NVSPDEYSRIIKVLEEAILSTDLAVYFRQRGSFLSLVKGGSLAWHR 186
++ + ++ + IL+TD++ F S + G L
Sbjct: 158 RSAVGLLRESGLFSHLPLESRQQMETQIGALILATDISRQNEYLSLFRSHLDRGDLCLED 217
Query: 187 EADRDLAVYFRQRGSFLSLVKGGSLAWHREADRGLLRGMTMTVCDLAAITKPWHVEKR-- 244
R L+ M + D+ + W + K+
Sbjct: 218 TRHRH-----------------------------LVLQMALKCADICNPCRTWELSKQWS 248
Query: 245 -------------------------------------------------AFAELSDKL-- 253
+A S+
Sbjct: 249 EKVTEEFFHQGDIEKKYHLGVSPLCDRHTESIANIQIGFMTYLVEPLFTEWARFSNTRLS 308
Query: 254 EPLVEGVRSNKQHWLEIAAEKRKQDERERCAES 286
+ ++ V NK W + E+ ++ + E
Sbjct: 309 QTMLGHVGLNKASWKGLQREQSSSEDTDAAFEL 341
Score = 70.9 bits (174), Expect = 3e-14
Identities = 17/78 (21%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 46 DDTLKVAELVSSEFFEQGDIERQELNITPIDIMNREKEDQLPLMQVGFIDSICLPIYEST 105
+ + + +E V+ EFF QGDIE+ + ++ + +R + + +Q+GF+ + P++
Sbjct: 242 ELSKQWSEKVTEEFFHQGDIEK-KYHLGVSPLCDRHT-ESIANIQIGFMTYLVEPLFTE- 298
Query: 106 QWWKIFGEIECLALLIAC 123
W + +L
Sbjct: 299 -WARFSNTRLSQTMLGHV 315
>3itu_A CGMP-dependent 3',5'-cyclic phosphodiesterase; Zn-binding,
all-alpha-helical, alternative splicing, hydrolase,
membrane, polymorphism; HET: IBM; 1.58A {Homo sapiens}
PDB: 3itm_A* 1z1l_A
Length = 345
Score = 111 bits (280), Expect = 7e-29
Identities = 62/357 (17%), Positives = 108/357 (30%), Gaps = 141/357 (39%)
Query: 22 SLRVPSAAKLNLHDFKFDDIHMEDDDTLKVAELVSSEFFEQGDIERQELNITPIDIMNRE 81
++ +A N F + + +DDT + + I I +
Sbjct: 15 GIQPVAAIDSNFASFTYTPRSLPEDDTSMAILSM---LQDMNFINN--YKIDCPTLAR-- 67
Query: 82 KEDQLPLMQVGFID-------------SICLPIYESTQWWKIFGEIECLALLIACLCHDL 128
+++ G+ D C +Y++ + +IE AL I+C+CHDL
Sbjct: 68 ---FCLMVKKGYRDPPYHNWMHAFSVSHFCYLLYKNLELTNYLEDIEIFALFISCMCHDL 124
Query: 129 DHRGTNNSFQIN-------------------------------------NVSPDEYSRII 151
DHRGTNNSFQ+ + S +Y R++
Sbjct: 125 DHRGTNNSFQVASKSVLAALYSSEGSVMERHHFAQAIAILNTHGCNIFDHFSRKDYQRML 184
Query: 152 KVLEEAILSTDLAVYFRQRGSFLSLVKGGSLAWHREADRDLAVYFRQRGSFLSLVKGGSL 211
++ + IL+TDLA + R + + G
Sbjct: 185 DLMRDIILATDLAHHLRIFKDLQKMAEVG------------------------------Y 214
Query: 212 AWHREADRGLLRGMTMTVCDLAAITKPWHVEKR--------------------------- 244
+ + LL + MT CDL+ TK W ++
Sbjct: 215 DRNNKQHHRLLLCLLMTSCDLSDQTKGWKTTRKIAELIYKEFFSQGDLEKAMGNRPMEMM 274
Query: 245 ------------------------AFAELSDKLEPLVEGVRSNKQHWLEIAAEKRKQ 277
+L K L E V SN++HW +++ + +
Sbjct: 275 DREKAYIPELQISFMEHIAMPIYKLLQDLFPKAAELYERVASNREHWTKVSHKFTIR 331
>3ecm_A High affinity CAMP-specific and IBMX-insensitive 3',5'-cyclic
phosphodiesterase 8A...; phosphodiesterase 8A PDE8A
inhibitor selectivity; 1.90A {Homo sapiens} PDB: 3ecn_A*
Length = 338
Score = 111 bits (278), Expect = 1e-28
Identities = 26/181 (14%), Positives = 56/181 (30%), Gaps = 49/181 (27%)
Query: 101 IYESTQWWKIFGEIECLALLIACLCHDLDHRGTNNSFQIN-------------------- 140
+ + I+ +A LIA HD+DH G NSF N
Sbjct: 90 FLSKERIKETLDPIDEVAALIAATIHDVDHPGRTNSFLCNAGSELAILYNDTAVLESHHA 149
Query: 141 -----------------NVSPDEYSRIIKVLEEAILSTDLAVYFRQRGSFLSLVKGGSLA 183
N+ ++Y + + + + +L+T++ +F F++ +
Sbjct: 150 ALAFQLTTGDDKCNIFKNMERNDYRTLRQGIIDMVLATEMTKHFEHVNKFVNSINKPLAT 209
Query: 184 WHREADRDLAVYFRQRGSFLSLVKGGSLAWHREADRGLLRGMTMTVCDLAAITKPWHVEK 243
+ D + + +R L++ M + D++ +P
Sbjct: 210 LEENGETD------------KNQEVINTMLRTPENRTLIKRMLIKCADVSNPCRPLQYCI 257
Query: 244 R 244
Sbjct: 258 E 258
Score = 68.7 bits (168), Expect = 1e-13
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 46 DDTLKVAELVSSEFFEQGDIERQELNITPIDIMNREKEDQLPLMQVGFIDSICLPIYEST 105
++ A +S E+F Q D E+Q+ + + +R +P Q+ FID ++++
Sbjct: 254 QYCIEWAARISEEYFSQTDEEKQQGLPVVMPVFDRNT-CSIPKSQISFIDYFITDMFDA- 311
Query: 106 QWWKIFGEIECL 117
W F ++ L
Sbjct: 312 --WDAFVDLPDL 321
>3hr1_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A;
PDE 10A, PDE10 inhibitors, allosteric enzyme,
alternative splicing; HET: PF9; 1.53A {Rattus
norvegicus} PDB: 3hqy_A* 3hqz_A* 3hqw_A*
Length = 380
Score = 111 bits (278), Expect = 2e-28
Identities = 66/358 (18%), Positives = 108/358 (30%), Gaps = 132/358 (36%)
Query: 14 DVKLHDLPSLRVPSAAKLNLHDFKFDDIHMEDDDTLKVAELVSSEFFEQGDIERQELNIT 73
+ L +P+ ++ F FD E+ + EL
Sbjct: 39 SEEWQGLMHFNLPARICRDIELFHFDIGPFENMWPGIFVYM----IHRSCGTSCFELEKL 94
Query: 74 PIDIMNREKE-------DQLPLMQVGFIDSICLPIYESTQWWKIFGEIECLALLIACLCH 126
IM+ +K + + V L +F ++E LLIACLCH
Sbjct: 95 CRFIMSVKKNYRRVPYHNWKHAVTVAHCMYAIL-----QNNNGLFTDLERKGLLIACLCH 149
Query: 127 DLDHRGTNNSFQIN-----------------------------------NVSPDEYSRII 151
DLDHRG +NS+ +S EY +++
Sbjct: 150 DLDHRGFSNSYLQKFDHPLAALYSTSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVL 209
Query: 152 KVLEEAILSTDLAVYFRQRGSFLSLVKGGSLAWHREADRDLAVYFRQRGSFLSLVKGGSL 211
+++ +AI++TDLA+YF R + + GSL H ++ RD
Sbjct: 210 EIIRKAIIATDLALYFGNRKQLEEMYQTGSLNLHNQSHRDR------------------- 250
Query: 212 AWHREADRGLLRGMTMTVCDLAAITKPWHVEKR--------------------------- 244
+ G+ MT CDL ++TK W V K
Sbjct: 251 ----------VIGLMMTACDLCSVTKLWPVTKLTANDIYAEFWAEGDEMKKLGIQPIPMM 300
Query: 245 -------------------------AFAELSDKLEPLVEGVRSNKQHWLEIAAEKRKQ 277
++ EPL++ R N W ++ +
Sbjct: 301 DRDKRDEVPQGQLGFYNAVAIPCYTTLTQILPPTEPLLKACRDNLNQWEKVIRGEETA 358
>1y2k_A DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodiesterase 4D;
PDE4D, pyrazole, hydrolase; HET: 7DE; 1.36A {Homo
sapiens} SCOP: a.211.1.2 PDB: 1xon_A* 1xoq_A* 1xom_A*
1xor_A* 1y2c_A* 1y2d_A* 1y2e_A* 1y2b_A* 3iak_A* 3k4s_A*
1tbb_A* 1tb7_A* 3sl5_A* 3sl4_A* 2fm5_A* 3sl3_A* 2fm0_A*
3sl6_A* 3sl8_A* 1oyn_A* ...
Length = 349
Score = 110 bits (276), Expect = 2e-28
Identities = 32/261 (12%), Positives = 74/261 (28%), Gaps = 111/261 (42%)
Query: 101 IYESTQWWKIFGEIECLALLIACLCHDLDHRGTNNSFQIN-------------------- 140
+ + +F ++E LA + A HD+DH G +N F IN
Sbjct: 111 LLSTPALEAVFTDLEILAAIFASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENHHL 170
Query: 141 ----------------NVSPDEYSRIIKVLEEAILSTDLAVYFRQRGSFLSLVKGGSLAW 184
N++ + + K++ + +L+TD++ + ++V+ +
Sbjct: 171 AVGFKLLQEENCDIFQNLTKKQRQSLRKMVIDIVLATDMSKHMNLLADLKTMVETKKVTS 230
Query: 185 HREADRDLAVYFRQRGSFLSLVKGGSLAWHREADRGLLRGMTMTVCDLAAITKPWHVEKR 244
G L +DR + + DL+ TKP + ++
Sbjct: 231 -----------------------SGVLLLDNYSDRIQVLQNMVHCADLSNPTKPLQLYRQ 267
Query: 245 ---------------------------------------------------AFAEL-SDK 252
+A+L
Sbjct: 268 WTDRIMEEFFRQGDRERERGMEISPMCDKHNASVEKSQVGFIDYIVHPLWETWADLVHPD 327
Query: 253 LEPLVEGVRSNKQHWLEIAAE 273
+ +++ + N++ + +
Sbjct: 328 AQDILDTLEDNREWYQSTIPQ 348
Score = 71.0 bits (174), Expect = 3e-14
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 50 KVAELVSSEFFEQGDIERQELNITPIDIMNREKEDQLPLMQVGFIDSICLPIYES 104
+ + + EFF QGD ER E + + ++ + QVGFID I P++E+
Sbjct: 267 QWTDRIMEEFFRQGDRER-ERGMEISPMCDKHNAS-VEKSQVGFIDYIVHPLWET 319
>1f0j_A PDE4B, phosphodiesterase 4B; PDE phosphodiesterase, hydrolase;
1.77A {Homo sapiens} SCOP: a.211.1.2 PDB: 1ro6_A*
1ro9_A* 1ror_A* 3hmv_A* 1tb5_A* 1xm6_A* 1xlx_A* 1xm4_A*
1xlz_A* 1xmu_A* 1xmy_A* 1xn0_A* 1xos_A* 1xot_B* 1y2h_A*
1y2j_A* 3kkt_A* 3g4i_A* 3g4k_A* 3g4l_A* ...
Length = 377
Score = 109 bits (274), Expect = 7e-28
Identities = 32/270 (11%), Positives = 74/270 (27%), Gaps = 111/270 (41%)
Query: 101 IYESTQWWKIFGEIECLALLIACLCHDLDHRGTNNSFQIN-------------------- 140
+ + +F ++E LA + A HD+DH G +N F IN
Sbjct: 98 LLSTPALDAVFTDLEILAAIFAAAIHDVDHPGVSNQFLINTNSELALMYNDESVLENHHL 157
Query: 141 ----------------NVSPDEYSRIIKVLEEAILSTDLAVYFRQRGSFLSLVKGGSLAW 184
N++ + + K++ + +L+TD++ + ++V+ +
Sbjct: 158 AVGFKLLQEEHCDIFMNLTKKQRQTLRKMVIDMVLATDMSKHMSLLADLKTMVETKKVTS 217
Query: 185 HREADRDLAVYFRQRGSFLSLVKGGSLAWHREADRGLLRGMTMTVCDLAAITKPWHVEKR 244
G L DR + + DL+ TK + ++
Sbjct: 218 -----------------------SGVLLLDNYTDRIQVLRNMVHCADLSNPTKSLELYRQ 254
Query: 245 ---------------------------------------------------AFAEL-SDK 252
+A+L
Sbjct: 255 WTDRIMEEFFQQGDKERERGMEISPMCDKHTASVEKSQVGFIDYIVHPLWETWADLVQPD 314
Query: 253 LEPLVEGVRSNKQHWLEIAAEKRKQDERER 282
+ +++ + N+ + + + E+
Sbjct: 315 AQDILDTLEDNRNWYQSMIPQAPAPPLDEQ 344
Score = 68.3 bits (167), Expect = 3e-13
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 46 DDTLKVAELVSSEFFEQGDIERQELNITPIDIMNREKEDQLPLMQVGFIDSICLPIYES 104
+ + + + EFF+QGD ER E + + ++ + QVGFID I P++E+
Sbjct: 250 ELYRQWTDRIMEEFFQQGDKER-ERGMEISPMCDKHT-ASVEKSQVGFIDYIVHPLWET 306
>3g4g_A DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodiesterase 4D;
PDE4D, UCR2, alternative splicing, cytoplasm,
cytoskeleton, hydrolase, membrane; HET: D71; 2.30A {Homo
sapiens} PDB: 3g45_A*
Length = 421
Score = 109 bits (273), Expect = 2e-27
Identities = 31/265 (11%), Positives = 73/265 (27%), Gaps = 111/265 (41%)
Query: 101 IYESTQWWKIFGEIECLALLIACLCHDLDHRGTNNSFQIN-------------------- 140
+ + +F ++E LA + A HD+DH G +N F IN
Sbjct: 177 LLSTPALEAVFTDLEILAAIFASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENHHL 236
Query: 141 ----------------NVSPDEYSRIIKVLEEAILSTDLAVYFRQRGSFLSLVKGGSLAW 184
N++ + + K++ + +L+TD++ + ++V+ +
Sbjct: 237 AVGFKLLQEENCDIFQNLTKKQRQSLRKMVIDIVLATDMSKHMNLLADLKTMVETKKVTS 296
Query: 185 HREADRDLAVYFRQRGSFLSLVKGGSLAWHREADRGLLRGMTMTVCDLAAITKPWHVEKR 244
G L +DR + + DL+ TKP + ++
Sbjct: 297 -----------------------SGVLLLDNYSDRIQVLQNMVHCADLSNPTKPLQLYRQ 333
Query: 245 ------------------------------------------------AFAELSD----K 252
+ +D
Sbjct: 334 WTDRIMEEFFRQGDRERERGMEISPMCDKHNASVEKSQVGFIDYIVHPLWETWADLVHPD 393
Query: 253 LEPLVEGVRSNKQHWLEIAAEKRKQ 277
+ +++ + N++ + +
Sbjct: 394 AQDILDTLEDNREWYQSTIPQAHHH 418
Score = 68.0 bits (166), Expect = 4e-13
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 50 KVAELVSSEFFEQGDIERQELNITPIDIMNREKEDQLPLMQVGFIDSICLPIYES 104
+ + + EFF QGD ER E + + ++ + QVGFID I P++E+
Sbjct: 333 QWTDRIMEEFFRQGDRER-ERGMEISPMCDKHNAS-VEKSQVGFIDYIVHPLWET 385
>3qi3_A High affinity CGMP-specific 3',5'-cyclic phosphod 9A; mutation,
glutamine switch, hydrolase-hydrolase inhibitor CO; HET:
PDB; 2.30A {Homo sapiens} PDB: 3qi4_A*
Length = 533
Score = 107 bits (268), Expect = 2e-26
Identities = 50/364 (13%), Positives = 101/364 (27%), Gaps = 132/364 (36%)
Query: 19 DLPSLRVPSAAKLNLHDFKFDDIHMEDDDTLKVAELVSSEFFEQGDIERQELNITPIDIM 78
P + L FD E ++ L E + + + G + +I P+ +
Sbjct: 182 TYPKYLLSPETIEALRKPTFDVWLWEPNEMLSCLEHM---YHDLGLVRD--FSINPVTLR 236
Query: 79 NREKEDQLPLMQVGF--------IDSICLPIYESTQWWKIFGEIECLALLIACLCHDLDH 130
F + + + + F + + L L+ A +CHDLDH
Sbjct: 237 RWLFCVHDNYRNNPFHNFRHCFCVAQMMYSMVWLCSLQEKFSQTDILILMTAAICHDLDH 296
Query: 131 RGTNNSFQIN------------------------------------NVSPDEYSRIIKVL 154
G NN++QIN N+ PD + +I + +
Sbjct: 297 PGYNNTYQINARTELAVRYNDISPLENHHCAVAFQILAEPECNIFSNIPPDGFKQIRQGM 356
Query: 155 EEAILSTDLAVYFRQRGSFLSLVKGGSLAWHREADRDLAVYFRQRGSFLSLVKGGSLAWH 214
IL+TD+A + SF ++ +
Sbjct: 357 ITLILATDMARHAEIMDSFKEKMENFD-------------------------------YS 385
Query: 215 READRGLLRGMTMTVCDLAAITKPWHVEKR------------------------------ 244
E LL+ + + CD++ +P V +
Sbjct: 386 NEEHMTLLKMILIKCCDISNEVRPMEVAEPWVDCLLEEYFMQSDREKSEGLPVAPFMDRD 445
Query: 245 ---------------------AFAELSDKLEP-LVEGVRSNKQHWLEIAAEKRKQDERER 282
+L +E +++ + ++ + E+ E ++
Sbjct: 446 KVTKATAEIGFIKFVLIPMFETVTKLFPMVEEIMLQPLWESRDRYEELKRIDDAMKELQK 505
Query: 283 CAES 286
+S
Sbjct: 506 KTDS 509
>3dyn_A High affinity CGMP-specific 3',5'-cyclic phosphod 9A;
phophodiestrase, enzyme mechanism, hydrolase, manganes
binding, phosphoprotein; HET: PCG IBM; 2.10A {Homo
sapiens} SCOP: a.211.1.2 PDB: 3dyl_A* 3dy8_A* 3dyq_A*
3dys_A* 3jsi_A* 3jsw_A* 2yy2_A* 2hd1_A* 3k3e_A* 3k3h_A*
3n3z_A*
Length = 329
Score = 104 bits (261), Expect = 2e-26
Identities = 49/358 (13%), Positives = 99/358 (27%), Gaps = 132/358 (36%)
Query: 21 PSLRVPSAAKLNLHDFKFDDIHMEDDDTLKVAELVSSEFFEQGDIERQELNITPIDIMNR 80
P + L FD E ++ L E + + + G + +I P+ +
Sbjct: 7 PKYLLSPETIEALRKPTFDVWLWEPNEMLSCLEHM---YHDLGLVRD--FSINPVTLRRW 61
Query: 81 EKEDQLPLMQVGF--------IDSICLPIYESTQWWKIFGEIECLALLIACLCHDLDHRG 132
F + + + + F + + L L+ A +CHDLDH G
Sbjct: 62 LFCVHDNYRNNPFHNFRHCFCVAQMMYSMVWLCSLQEKFSQTDILILMTAAICHDLDHPG 121
Query: 133 TNNSFQIN------------------------------------NVSPDEYSRIIKVLEE 156
NN++QIN N+ PD + +I + +
Sbjct: 122 YNNTYQINARTELAVRYNDISPLENHHCAVAFQILAEPECNIFSNIPPDGFKQIRQGMIT 181
Query: 157 AILSTDLAVYFRQRGSFLSLVKGGSLAWHREADRDLAVYFRQRGSFLSLVKGGSLAWHRE 216
IL+TD+A + SF ++ + E
Sbjct: 182 LILATDMARHAEIMDSFKEKMENFD-------------------------------YSNE 210
Query: 217 ADRGLLRGMTMTVCDLAAITKPWHVEKR-------------------------------- 244
LL+ + + CD++ +P V +
Sbjct: 211 EHMTLLKMILIKCCDISNEVRPMEVAEPWVDCLLEEYFMQSDREKSEGLPVAPFMDRDKV 270
Query: 245 -------------------AFAELSDKLEP-LVEGVRSNKQHWLEIAAEKRKQDERER 282
+L +E +++ + ++ + E+ E ++
Sbjct: 271 TKATAQIGFIKFVLIPMFETVTKLFPMVEEIMLQPLWESRDRYEELKRIDDAMKELQK 328
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle
dysfunction, inhibitor design, allosteric enzyme,
alternative splicing, CGMP binding; HET: WAN; 2.00A
{Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A
2k31_A*
Length = 878
Score = 106 bits (264), Expect = 8e-26
Identities = 59/265 (22%), Positives = 92/265 (34%), Gaps = 117/265 (44%)
Query: 101 IYESTQWWKIFGEIECLALLIACLCHDLDHRGTNNSFQIN-------------------- 140
++ + ++E LALLIA L HDLDHRG NNS+
Sbjct: 631 ALKAGKIQNKLTDLEILALLIAALSHDLDHRGVNNSYIQRSEHPLAQLYCHSIMEHHHFD 690
Query: 141 ---------------NVSPDEYSRIIKVLEEAILSTDLAVYFRQRGSFLSLVKGGSLAWH 185
+S +EY +K++++AIL+TDLA+Y ++RG F L++
Sbjct: 691 QCLMILNSPGNQILSGLSIEEYKTTLKIIKQAILATDLALYIKRRGEFFELIRKNQFNLE 750
Query: 186 READRDLAVYFRQRGSFLSLVKGGSLAWHREADRGLLRGMTMTVCDLAAITKPWHVEKR- 244
++L M MT CDL+AITKPW +++R
Sbjct: 751 DPHQKEL-----------------------------FLAMLMTACDLSAITKPWPIQQRI 781
Query: 245 ----------------------------------------------------AFAELSDK 252
A +S+
Sbjct: 782 AELVATEFFDQGDRERKELNIEPTDLMNREKKNKIPSMQVGFIDAICLQLYEALTHVSED 841
Query: 253 LEPLVEGVRSNKQHWLEIAAEKRKQ 277
PL++G R N+Q W +A ++ K
Sbjct: 842 CFPLLDGCRKNRQKWQALAEQQEKM 866
Score = 82.9 bits (204), Expect = 6e-18
Identities = 37/68 (54%), Positives = 53/68 (77%), Gaps = 2/68 (2%)
Query: 50 KVAELVSSEFFEQGDIERQELNITPIDIMNREKEDQLPLMQVGFIDSICLPIYESTQWWK 109
++AELV++EFF+QGD ER+ELNI P D+MNREK++++P MQVGFID+ICL +YE+
Sbjct: 780 RIAELVATEFFDQGDRERKELNIEPTDLMNREKKNKIPSMQVGFIDAICLQLYEA--LTH 837
Query: 110 IFGEIECL 117
+ + L
Sbjct: 838 VSEDCFPL 845
>1so2_A CGMP-inhibited 3',5'-cyclic phosphodiesterase B; PDE3B
phosphodiesterase, hydrolase; HET: HG9 666; 2.40A {Homo
sapiens} SCOP: a.211.1.2 PDB: 1soj_A*
Length = 420
Score = 102 bits (256), Expect = 4e-25
Identities = 36/307 (11%), Positives = 67/307 (21%), Gaps = 114/307 (37%)
Query: 68 QELNITPIDIMNREKEDQLPLMQVGFIDSICLPIYESTQWWKIFGEIECLALLIACLCHD 127
+ + + + S P +E +AL +A HD
Sbjct: 110 IHNGCGTGNETDSDGRINHGRIAYISSKSCSNPDESYGCLSSNIPALELMALYVAAAMHD 169
Query: 128 LDHRGTNNSFQIN-------------------------------------NVSPDEYSRI 150
DH G N+F + ++ E+ R
Sbjct: 170 YDHPGRTNAFLVATNAPQAVLYNDRSVLENHHAASAWNLYLSRPEYNFLLHLDHVEFKRF 229
Query: 151 IKVLEEAILSTDLAVYFRQRGSFLSLVKGGSLAWHREADRDLAVYFRQRGSFLSLVKGGS 210
++ EAIL+TDL +F F + V
Sbjct: 230 RFLVIEAILATDLKKHFDFLAEFNAKAN--------------------------DVNSNG 263
Query: 211 LAWHREADRGLLRGMTMTVCDLAAITKPWHVEKR-------------------------- 244
+ W E DR L+ + + + D+ K + +
Sbjct: 264 IEWSNENDRLLVCQVCIKLADINGPAKVRDLHLKWTEGIVNEFYEQGDEEANLGLPISPF 323
Query: 245 -------------------------AFAELSDKLEPLVEGVRSNKQHWLEIAAEKRKQDE 279
++ +E N + + E
Sbjct: 324 MDRSSPQLAKLQESFITHIVGPLCNSYDAAGLLPGQWLEAEEDNDTESGDDEDGEELDTE 383
Query: 280 RERCAES 286
E +
Sbjct: 384 DEEMENN 390
Score = 70.0 bits (171), Expect = 8e-14
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 50 KVAELVSSEFFEQGDIERQELNITPIDIMNREKEDQLPLMQVGFIDSICLPIYES 104
K E + +EF+EQGD E L + M+R QL +Q FI I P+ S
Sbjct: 297 KWTEGIVNEFYEQGDEEA-NLGLPISPFMDRSS-PQLAKLQESFITHIVGPLCNS 349
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains,
allosteric regulation hydrolase, membrane; 3.02A {Homo
sapiens}
Length = 691
Score = 102 bits (256), Expect = 8e-25
Identities = 51/264 (19%), Positives = 83/264 (31%), Gaps = 118/264 (44%)
Query: 101 IYESTQWWKIFGEIECLALLIACLCHDLDHRGTNNSFQIN-------------------- 140
+Y++ + +IE AL I+C+CHDLDHRGTNNSFQ+
Sbjct: 458 LYKNLELTNYLEDIEIFALFISCMCHDLDHRGTNNSFQVASKSVLAALYSSEGSVMERHH 517
Query: 141 -----------------NVSPDEYSRIIKVLEEAILSTDLAVYFRQRGSFLSLVKGGSLA 183
+ S +Y R++ ++ + IL+TDLA + R + + G
Sbjct: 518 FAQAIAILNTHGCNIFDHFSRKDYQRMLDLMRDIILATDLAHHLRIFKDLQKMAEVG--- 574
Query: 184 WHREADRDLAVYFRQRGSFLSLVKGGSLAWHREADRGLLRGMTMTVCDLAAITKPWHVEK 243
+ + LL + MT CDL+ TK W +
Sbjct: 575 ---------------------------YDRNNKQHHRLLLCLLMTSCDLSDQTKGWKTTR 607
Query: 244 R---------------------------------------------------AFAELSDK 252
+ +L K
Sbjct: 608 KIAELIYKEFFSQGDLEKAMGNRPMEMMDREKAYIPELQISFMEHIAMPIYKLLQDLFPK 667
Query: 253 LEPLVEGVRSNKQHWLEIAAEKRK 276
L E V SN++HW +++ +
Sbjct: 668 AAELYERVASNREHWTKVSHLVPR 691
Score = 76.6 bits (188), Expect = 7e-16
Identities = 25/68 (36%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 50 KVAELVSSEFFEQGDIERQELNITPIDIMNREKEDQLPLMQVGFIDSICLPIYESTQWWK 109
K+AEL+ EFF QGD+E+ + P+++M+REK +P +Q+ F++ I +PIY+
Sbjct: 608 KIAELIYKEFFSQGDLEK-AMGNRPMEMMDREK-AYIPELQISFMEHIAMPIYKL--LQD 663
Query: 110 IFGEIECL 117
+F + L
Sbjct: 664 LFPKAAEL 671
>2r8q_A Class I phosphodiesterase PDEB1; leishimaniasis, parasite inhibitor
selectivity, CAMP phosphodiesterase, hydrolase; HET:
IBM; 1.50A {Leishmania major}
Length = 359
Score = 100 bits (251), Expect = 1e-24
Identities = 49/362 (13%), Positives = 95/362 (26%), Gaps = 131/362 (36%)
Query: 16 KLHDLPSLRVPSAAKLNLHDFKFDDIHMEDDDTLKVAELVSSEFFEQGDIERQELNITPI 75
+ + S+ A F ++ + + + A V + ++
Sbjct: 23 EREAVMSIDFGGAYDFTSPGFNLFEVREKYSEPMDAAAGVVYNLLWNSGL-PEKFGCREQ 81
Query: 76 DIMNREKEDQLPLMQVGF--------IDSICLPIYESTQWWKIFGEIECLALLIACLCHD 127
++N + + +V + + + + ++ E+EC LL+ L HD
Sbjct: 82 TLLNFILQCRRRYRRVPYHNFYHVVDVCQTLHTYLYTGKASELLTELECYVLLVTALVHD 141
Query: 128 LDHRGTNNSFQIN---------------------------------------NVSPDEYS 148
LDH G NNSF + +S + +
Sbjct: 142 LDHMGVNNSFYLKTDSPLGILSSASGNNSVLEVHHCSLAIEILSDPAADVFEGLSGQDVA 201
Query: 149 RIIKVLEEAILSTDLAVYFRQRGSFLSLVKGGSLAWHREADRDLAVYFRQRGSFLSLVKG 208
+ L + +L+TD+A + F L G
Sbjct: 202 YAYRALIDCVLATDMAKHADALSRFTELATSG---------------------------- 233
Query: 209 GSLAWHREADRGLLRGMTMTVCDLAAITKPWHV------------------EKRA----- 245
+ R L+ + D++ +TKP+ EK
Sbjct: 234 --FEKDNDTHRRLVMETLIKAGDVSNVTKPFETSRMWAMAVTEEFYRQGDMEKEKGVEVL 291
Query: 246 ------------------------------FAELSDKLEPLVEGVRSNKQHWLEIAAEKR 275
L ++ V+ V SN+ W EI +R
Sbjct: 292 PMFDRSKNNELARGQIGFIDFVAGKFFRDIVGNLFHGMQWCVDTVNSNRAKWQEILDGRR 351
Query: 276 KQ 277
Sbjct: 352 DS 353
>1taz_A Calcium/calmodulin-dependent 3',5'-cyclic nucleot phosphodiesterase
1B; PDE1B, hydrolase; HET: CME; 1.77A {Homo sapiens}
SCOP: a.211.1.2
Length = 365
Score = 99 bits (249), Expect = 2e-24
Identities = 32/177 (18%), Positives = 56/177 (31%), Gaps = 70/177 (39%)
Query: 104 STQWWKIFGEIECLALLIACLCHDLDHRGTNNSFQIN----------------------- 140
T EIE LA++ A HD +H GT NSF I
Sbjct: 100 RTGMVHCLSEIELLAIIFAAAIHDYEHTGTTNSFHIQTKSECAIVYNDRSVLENHHISSV 159
Query: 141 -------------NVSPDEYSRIIKVLEEAILSTDLAVYFRQRGSFLSLVKGGSLAWHRE 187
N++ DE+ + ++ E +L+TD++ +F+Q + + ++
Sbjct: 160 FRLMQDDEMNIFINLTKDEFVELRALVIEMVLATDMSCHFQQVKTMKTALQ--------- 210
Query: 188 ADRDLAVYFRQRGSFLSLVKGGSLAWHREADRGLLRGMTMTVCDLAAITKPWHVEKR 244
D+ + + D++ TK W V R
Sbjct: 211 -------------------------QLERIDKPKALSLLLHAADISHPTKQWLVHSR 242
Score = 70.6 bits (173), Expect = 4e-14
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 50 KVAELVSSEFFEQGDIERQELNITPIDIMNREKEDQLPLMQVGFIDSICLPIYES 104
+ + + EFF QGD E EL + + +R + Q+GFID I P +
Sbjct: 242 RWTKALMEEFFRQGDKEA-ELGLPFSPLCDRTS-TLVAQSQIGFIDFIVEPTFSV 294
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.9 bits (103), Expect = 4e-05
Identities = 43/271 (15%), Positives = 77/271 (28%), Gaps = 101/271 (37%)
Query: 43 MEDDDTLKVAELVSSEFFEQGDIERQE-LNITPIDIM-NREKEDQLPLMQVGFIDSICLP 100
M+ T K A+ V + + D ++ + +DI+ N + + F
Sbjct: 1633 MDLYKTSKAAQDV----WNRADNHFKDTYGFSILDIVINNPVN-----LTIHFGGEKGKR 1683
Query: 101 IYE-------------STQWWKIFGEIECLALLIACLCHDLDHRGTNNSFQINNVSPDEY 147
I E + KIF EI + T+ +F+ S
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIFKEI--------------NEHSTSYTFR----SEKG- 1724
Query: 148 SRIIKVLEE------AILSTDLAVY--FRQRGSF--------LSLVKG---------GSL 182
+L A+ + A + + +G SL G +
Sbjct: 1725 -----LLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSL--GEYAALASLADVM 1777
Query: 183 AWHREADRDLAVYF-RQRGSFL-SLVKGGSLAWHREADRGLLRGMTMTVCDLAAITKPWH 240
+ V RG + V L + + AI P
Sbjct: 1778 SI---ES---LVEVVFYRGMTMQVAVPRDELG--------------RSNYGMIAIN-PGR 1816
Query: 241 VEKRAFAELSDKLEPLVEGVRSNKQHWLEIA 271
V +F++ + L+ +VE V +EI
Sbjct: 1817 VAA-SFSQ--EALQYVVERVGKRTGWLVEIV 1844
Score = 39.6 bits (92), Expect = 0.001
Identities = 48/302 (15%), Positives = 90/302 (29%), Gaps = 110/302 (36%)
Query: 5 VIAYGSVYRDVKLHDLPSLRVPSAAKLN---LHDFKFDDIHME-------DDDTLKVAEL 54
+++GS+ L VP+A+ L + +F+ I E DD+ AEL
Sbjct: 10 TLSHGSLE--------HVLLVPTASFFIASQLQE-QFNKILPEPTEGFAADDEPTTPAEL 60
Query: 55 VSSEFFEQGDIERQELNITPIDIMNREKEDQLPLMQVGFIDSICLPIYESTQWWKIFGEI 114
V +F +G++ S+ P + Q+
Sbjct: 61 V-GKF-------------------------------LGYVSSLVEPS-KVGQF------D 81
Query: 115 ECLALLIACLCHD-LDHRGTN-NSFQINNVSPDEYSRIIKVLEEAILSTDLAVYFRQRG- 171
+ L L + + L G + ++ + + + ++K E ++ Y R
Sbjct: 82 QVLNLCLTEFENCYL--EGNDIHAL-AAKLLQENDTTLVKTKE--LIKN----YITARIM 132
Query: 172 SFLSLVKGGSLAWHREADRDLA-VY--FRQRGSFLSLVKGG---SLAWHREADRGLLRGM 225
+ K + A R A + F GG + + E LR
Sbjct: 133 AKRPFDKKSNSALFRAVGEGNAQLVAIF-----------GGQGNTDDYFEE-----LR-- 174
Query: 226 TMTVCDLAAITKPWHVEKRAFAELSDKLEPLVEGVRSNKQH---------WLEIAAEKRK 276
DL V ++ L L+ ++ WLE +
Sbjct: 175 -----DLYQTYHV-LVG-DLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPD 227
Query: 277 QD 278
+D
Sbjct: 228 KD 229
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.1 bits (77), Expect = 0.062
Identities = 40/296 (13%), Positives = 81/296 (27%), Gaps = 89/296 (30%)
Query: 1 MNYDVIAYGSVYRDVKLHDLPSLR-------VPSAAKLNLHDFKFDDIHMEDDDTLKVAE 53
M+++ + Y+D+ + V K L + D I M D
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 54 L----------VSSEFFEQGDIERQELNITPIDIMNR-EKEDQLPLMQVGFIDSICLPIY 102
L + +F E ++ R +M+ + E + P S+ +Y
Sbjct: 67 LFWTLLSKQEEMVQKFVE--EVLRINYKF----LMSPIKTEQRQP--------SMMTRMY 112
Query: 103 ESTQWWKIFGEIECLALLIACLCHDLDHRGTNNSFQINNVS-PDEYSRIIKVLEEAILST 161
D + N F NVS Y ++ + L E +
Sbjct: 113 IE--------------------QRDRLYND-NQVFAKYNVSRLQPYLKLRQALLELRPAK 151
Query: 162 DLAVYFRQRGSFLSLVKGGS----LAWHREADRDLAVYFRQRGSFLSLVKGGSLAW---- 213
++ + G GS +A + V + W
Sbjct: 152 NVLID----G------VLGSGKTWVA--LDVCLSYKV---------QCKMDFKIFWLNLK 190
Query: 214 HREADRGLLRGMTMTVCDLAAITKPWHVEKRAFAELSDKLEPLVEGVR---SNKQH 266
+ + +L M + I W + + ++ + +R +K +
Sbjct: 191 NCNSPETVLE-MLQKLL--YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Score = 29.8 bits (66), Expect = 1.1
Identities = 18/105 (17%), Positives = 36/105 (34%), Gaps = 28/105 (26%)
Query: 117 LAL-LIACLCHDLDHRGTNNSFQINNVSPDEYSRIIKVLEEAILSTDLAVYFRQRGSF-- 173
L +IA D T ++++ +V+ D+ + II+ + + F + F
Sbjct: 328 RRLSIIAESIRD--GLATWDNWK--HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383
Query: 174 --------LSLVKGGSLAWH---READRDLAVYFRQRGSFLSLVK 207
LSL+ W + + + SLV+
Sbjct: 384 SAHIPTILLSLI------WFDVIKSDVMVVVNKLHKY----SLVE 418
Score = 27.5 bits (60), Expect = 7.5
Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 12/84 (14%)
Query: 11 VYRD-----VKL-HDLPSLRVPSAAKLNLHDFKFDDIHMEDDDTLKVAELVSS--EFF-- 60
V+ D K+ HD + + L KF ++ D+D K LV++ +F
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDP-KYERLVNAILDFLPK 554
Query: 61 -EQGDIERQELNITPIDIMNREKE 83
E+ I + ++ I +M ++
Sbjct: 555 IEENLICSKYTDLLRIALMAEDEA 578
>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold,
oxidoreductase; 2.20A {Caenorhabditis elegans}
Length = 460
Score = 32.2 bits (74), Expect = 0.16
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 8/73 (10%)
Query: 190 RDLAVYFRQRGSFLSLVKGGSLAWHREADRGLLR-GMTM---TVCDLAAITKPWHVEKRA 245
R L VYF Q L + + G L + D+ + G M TV D+ ++K
Sbjct: 239 RLLHVYFDQ-SQKL-MYEYGYLPH--QIDKIITNFGFLMGPMTVADMNGFDVMEKLKKEN 294
Query: 246 FAELSDKLEPLVE 258
E + + +
Sbjct: 295 GLEPNPIEKEMWR 307
>2ed6_A 25KDA structural protein VP25; beta barrel, N-terminal helix
protruding region, viral protein; 2.00A {Shrimp white
spot syndrome virus} SCOP: b.170.1.1
Length = 170
Score = 27.8 bits (61), Expect = 2.9
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 22 SLRVPSAAKLNLHDFKFDDIHMEDDDTLKVAELVSSEFFEQGDIERQELNITPID 76
+LR+P A++ FK D+ D DTL ++ + + Q E +L ITP++
Sbjct: 20 NLRIPVTAEVGSGYFKMTDVSF-DSDTLGKIKIRNGKSDAQMKEEDADLVITPVE 73
>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY
high affinity, antibody binding, electrostatics,
directed evolution; HET: FLU; 1.50A {Homo sapiens}
Length = 268
Score = 27.7 bits (62), Expect = 4.1
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 16/49 (32%)
Query: 132 GTNNSFQINNVSPDEYSRIIKVLEEAILSTDLAVYFRQRGSFLSLVKGG 180
GT+ + +IN V + DL VYF + + + GG
Sbjct: 87 GTDFTLKINRVEAE----------------DLGVYFCSQSTHVPWTFGG 119
>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer,
SCFV, variable domain, immune system; 2.60A {Mus
musculus} SCOP: b.1.1.1 b.1.1.1
Length = 240
Score = 27.3 bits (61), Expect = 4.7
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Query: 160 STDLAVYFRQRGSFLSLVKGGS---LAWHREADRDLAVYFRQRGSFLSLVKGGS 210
+ D+A Y+ Q+ + GG + V +Q G+ LV+ G+
Sbjct: 84 ADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGA--ELVEPGA 135
>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4,
structural genomics, ubiquitin biology, structural
genomics consortium, SGC; 1.25A {Homo sapiens}
Length = 127
Score = 26.6 bits (59), Expect = 5.1
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 177 VKGGSLAWHREADRDLAVY 195
V GG +AW + D Y
Sbjct: 109 VVGGLMAWAAKIDGTFPQY 127
>3kgb_A Thymidylate synthase 1/2; ssgcid, NIH, niaid, SBRI, UW, decode,
methyltransferase, nucleotide biosynt transferase,
structural genomics; 2.20A {Encephalitozoon cuniculi}
Length = 294
Score = 26.4 bits (59), Expect = 9.5
Identities = 6/27 (22%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 20 LPSLRV-PSAAKLNLHDFKFDDIHMED 45
P L V P + F+++D +
Sbjct: 255 FPKLFVSPKGPRTEPEHFQYEDFELVG 281
>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme
type 1, L-bifunction enzyme, MFE-1, fatty acid beta
oxidation; 1.90A {Rattus norvegicus}
Length = 463
Score = 26.8 bits (60), Expect = 9.7
Identities = 20/81 (24%), Positives = 28/81 (34%), Gaps = 9/81 (11%)
Query: 190 RDLAVYFRQRGSFLSLVKGGSLAWHREADRGLLR-GMTM---TVCDLAAITKPWHVEKRA 245
R LA Y+ Q L++ GS + D L G M V DLA + W + K
Sbjct: 223 RMLAPYYNQ---GFFLLEEGSKPE--DVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQ 277
Query: 246 FAELSDKLEPLVEGVRSNKQH 266
R N ++
Sbjct: 278 GLTGPSLPPGTPVRKRGNSRY 298
>3qj7_A TS, tsase, thymidylate synthase; thymidilate synthase, structural
genomics, TB structural GEN consortium, TBSGC,
transferase; HET: UMP SPM; 2.50A {Mycobacterium
tuberculosis}
Length = 264
Score = 26.4 bits (59), Expect = 9.9
Identities = 4/26 (15%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 20 LPSLRVPSAAKLNLHDFKFDDIHMED 45
P L + + ++ ++ ++DI +++
Sbjct: 228 YPKLLLAD--RDSIFEYTYEDIVVKN 251
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.414
Gapped
Lambda K H
0.267 0.0686 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,490,724
Number of extensions: 268468
Number of successful extensions: 704
Number of sequences better than 10.0: 1
Number of HSP's gapped: 646
Number of HSP's successfully gapped: 79
Length of query: 286
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 193
Effective length of database: 4,105,140
Effective search space: 792292020
Effective search space used: 792292020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.8 bits)