RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14371
(286 letters)
>d1tbfa_ a.211.1.2 (A:) cGMP-specific 3',5'-cyclic phosphodiesterase
pde5a1-Ibmx {Human (Homo sapiens) [TaxId: 9606]}
Length = 326
Score = 91.6 bits (227), Expect = 4e-22
Identities = 76/347 (21%), Positives = 118/347 (34%), Gaps = 118/347 (34%)
Query: 16 KLHDLPSLRVPSAAKLNLHDFKFDDIHMEDDDTLKVAELVSSEFFEQGDIERQELNITPI 75
+L L + VPSA L + DF F D + D +T + F + ++ +
Sbjct: 6 ELQSLAAAVVPSAQTLKITDFSFSDFELSDLETALCTIRM---FTDLNLVQN--FQMKHE 60
Query: 76 DIMNREKEDQLPLMQVGFIDSI----------------------CLPIYESTQWWKIFGE 113
+ +I S+ ++ + +
Sbjct: 61 VLCR-------------WILSVKKNYRKNVAYHNWRHAFNTAQCMFAALKAGKIQNKLTD 107
Query: 114 IECLALLIACLCHDLDHRGTNNSFQINNVSP----------------DEYSRIIKVLEEA 157
+E LALLIA L HDLDH G +N F IN S D+ I+
Sbjct: 108 LEILALLIAALSHDLDHPGVSNQFLINTNSELALMYNDESVLEHHHFDQCLMILNSPGNQ 167
Query: 158 ILSTDLAVYFRQRGSFLSLVKGGSLAWHREADRDLAVYFRQRGSFLSLVKGGSLAWHREA 217
ILS + + + L ++K LA DLA+Y ++RG F L++
Sbjct: 168 ILSG---LSIEEYKTTLKIIKQAILA------TDLALYIKRRGEFFELIRKNQFNLEDPH 218
Query: 218 DRGLLRGMTMTVCDLAAITKPWHVEKR--------------------------------- 244
+ L M MT CDL+AITKPW +++R
Sbjct: 219 QKELFLAMLMTACDLSAITKPWPIQQRIAELVATEFFDQGDRERKELNIEPTDLMNREKK 278
Query: 245 --------------------AFAELSDKLEPLVEGVRSNKQHWLEIA 271
A +S+ PL++G R N+Q W +A
Sbjct: 279 NKIPSMQVGFIDAICLQLYEALTHVSEDCFPLLDGCRKNRQKWQALA 325
>d3dy8a1 a.211.1.2 (A:182-505) High-affinity cGMP-specific
3',5'-cyclic phosphodiesterase 9A, PDE9A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 324
Score = 75.8 bits (186), Expect = 2e-16
Identities = 49/352 (13%), Positives = 100/352 (28%), Gaps = 144/352 (40%)
Query: 32 NLHDFKFDDIHMEDDDTLKVAELVSSEFFEQGDIERQELNITPIDIMN-----REKEDQL 86
L FD E ++ L E + + + G + +I P+ + +
Sbjct: 14 ALRKPTFDVWLWEPNEMLSCLEHM---YHDLGLVRD--FSINPVTLRRWLFCVHDNYRNN 68
Query: 87 P---------LMQVGFIDSICLPIYESTQWWKIFGEIECLALLIACLCHDLDHRGTNNSF 137
P + Q+ + + + F + + L L+ A +CHDLDH G NN++
Sbjct: 69 PFHNFRHCFCVAQMMYS------MVWLCSLQEKFSQTDILILMTAAICHDLDHPGYNNTY 122
Query: 138 QIN------------------------------------NVSPDEYSRIIKVLEEAILST 161
QIN N+ PD + +I + + IL+T
Sbjct: 123 QINARTELAVRYNDISPLENHHCAVAFQILAEPECNIFSNIPPDGFKQIRQGMITLILAT 182
Query: 162 DLAVYFRQRGSFLSLVKGGSLAWHREADRDLAVYFRQRGSFLSLVKGGSLAWHREADRGL 221
D+A + SF ++ + + E L
Sbjct: 183 DMARHAEIMDSFKEKME-------------------------------NFDYSNEEHMTL 211
Query: 222 LRGMTMTVCDLAAITKPWHVEKR------------------------------------- 244
L+ + + CD++ +P V +
Sbjct: 212 LKMILIKCCDISNEVRPMEVAEPWVDCLLEEYFMQSDREKSEGLPVAPFMDRDKVTKATA 271
Query: 245 --------------AFAELSDKLEP-LVEGVRSNKQHWLEIAAEKRKQDERE 281
+L +E +++ + ++ + E+ E +
Sbjct: 272 QIGFIKFVLIPMFETVTKLFPMVEEIMLQPLWESRDRYEELKRIDDAMKELQ 323
>d1so2a_ a.211.1.2 (A:) cGMP-inhibited 3',5'-cyclic
phosphodiesterase B, pde3b {Human (Homo sapiens) [TaxId:
9606]}
Length = 415
Score = 76.0 bits (186), Expect = 3e-16
Identities = 34/266 (12%), Positives = 60/266 (22%), Gaps = 114/266 (42%)
Query: 105 TQWWKIFGEIECLALLIACLCHDLDHRGTNNSFQIN------------------------ 140
+E +AL +A HD DH G N+F +
Sbjct: 142 GCLSSNIPALELMALYVAAAMHDYDHPGRTNAFLVATNAPQAVLYNDRSVLENHHAASAW 201
Query: 141 -------------NVSPDEYSRIIKVLEEAILSTDLAVYFRQRGSFLSLVKGGSLAWHRE 187
++ E+ R ++ EAIL+TDL +F F +
Sbjct: 202 NLYLSRPEYNFLLHLDHVEFKRFRFLVIEAILATDLKKHFDFLAEFNAKAN--------- 252
Query: 188 ADRDLAVYFRQRGSFLSLVKGGSLAWHREADRGLLRGMTMTVCDLAAITKPWHVEKR--- 244
V + W E DR L+ + + + D+ K + +
Sbjct: 253 -----------------DVNSNGIEWSNENDRLLVCQVCIKLADINGPAKVRDLHLKWTE 295
Query: 245 ------------------------------------------------AFAELSDKLEPL 256
++
Sbjct: 296 GIVNEFYEQGDEEANLGLPISPFMDRSSPQLAKLQESFITHIVGPLCNSYDAAGLLPGQW 355
Query: 257 VEGVRSNKQHWLEIAAEKRKQDERER 282
+E N + + E E
Sbjct: 356 LEAEEDNDTESGDDEDGEELDTEDEE 381
Score = 57.5 bits (138), Expect = 4e-10
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 50 KVAELVSSEFFEQGDIERQELNITPIDIMNREKEDQLPLMQVGFIDSICLPIYES 104
K E + +EF+EQGD E L + M+R QL +Q FI I P+ S
Sbjct: 292 KWTEGIVNEFYEQGDEEA-NLGLPISPFMDRSS-PQLAKLQESFITHIVGPLCNS 344
>d1taza_ a.211.1.2 (A:) Catalytic domain of cyclic nucleotide
phosphodiesterase 1b, PDE1B {Human (Homo sapiens)
[TaxId: 9606]}
Length = 357
Score = 68.6 bits (167), Expect = 8e-14
Identities = 33/152 (21%), Positives = 56/152 (36%), Gaps = 14/152 (9%)
Query: 101 IYESTQWWKIFGEIECLALLIACLCHDLDHRGTNNSFQINNVSP--DEYSRIIKVLEEAI 158
T EIE LA++ A HD +H GT NSF I S Y+ VLE
Sbjct: 93 FLLRTGMVHCLSEIELLAIIFAAAIHDYEHTGTTNSFHIQTKSECAIVYNDRS-VLENHH 151
Query: 159 LSTDLAVYFRQRGSFLSLVKG------GSLAWHREADRDLAVYFRQRGSFLSLVKGGSLA 212
+S+ + + + +L D++ +F+Q + + ++
Sbjct: 152 ISSVFRLMQDDEMNIFINLTKDEFVELRALVIEMVLATDMSCHFQQVKTMKTALQ----- 206
Query: 213 WHREADRGLLRGMTMTVCDLAAITKPWHVEKR 244
D+ + + D++ TK W V R
Sbjct: 207 QLERIDKPKALSLLLHAADISHPTKQWLVHSR 238
Score = 54.3 bits (130), Expect = 4e-09
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 50 KVAELVSSEFFEQGDIERQELNITPIDIMNREKEDQLPLMQVGFIDSICLPIYES 104
+ + + EFF QGD E EL + + +R + Q+GFID I P +
Sbjct: 238 RWTKALMEEFFRQGDKEA-ELGLPFSPLCDRTS-TLVAQSQIGFIDFIVEPTFSV 290
>d1y2ka1 a.211.1.2 (A:86-411) Catalytic domain of cyclic nucleotide
phosphodiesterase pde4d {Human (Homo sapiens) [TaxId:
9606]}
Length = 326
Score = 68.2 bits (166), Expect = 9e-14
Identities = 29/180 (16%), Positives = 60/180 (33%), Gaps = 59/180 (32%)
Query: 101 IYESTQWWKIFGEIECLALLIACLCHDLDHRGTNNSFQIN-------------------- 140
+ + +F ++E LA + A HD+DH G +N F IN
Sbjct: 90 LLSTPALEAVFTDLEILAAIFASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENHHL 149
Query: 141 ----------------NVSPDEYSRIIKVLEEAILSTDLAVYFRQRGSFLSLVKGGSLAW 184
N++ + + K++ + +L+TD++ + ++V+ +
Sbjct: 150 AVGFKLLQEENCDIFQNLTKKQRQSLRKMVIDIVLATDMSKHMNLLADLKTMVETKKVTS 209
Query: 185 HREADRDLAVYFRQRGSFLSLVKGGSLAWHREADRGLLRGMTMTVCDLAAITKPWHVEKR 244
G L +DR + + DL+ TKP + ++
Sbjct: 210 S-----------------------GVLLLDNYSDRIQVLQNMVHCADLSNPTKPLQLYRQ 246
Score = 49.3 bits (117), Expect = 1e-07
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 46 DDTLKVAELVSSEFFEQGDIERQELNITPIDIMNREKEDQLPLMQVGFIDSICLPIYES 104
+ + + EFF QGD ER E + + ++ + QVGFID I P++E+
Sbjct: 242 QLYRQWTDRIMEEFFRQGDRER-ERGMEISPMCDKHNAS-VEKSQVGFIDYIVHPLWET 298
>d1ix1a_ d.167.1.1 (A:) Peptide deformylase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 169
Score = 26.7 bits (58), Expect = 2.4
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 101 IYESTQWWKIFGEIECLALLIACLCHDLDHRGTNNSFQINNVSPDEYSRIIKVLE 155
++ E LL C+ H+ DH N ++ +S + RI K LE
Sbjct: 108 RIKALDRDGNPFEEVAEGLLAVCIQHECDH--LNGKLFVDYLSTLKRDRIRKKLE 160
>d1h76a2 c.94.1.2 (A:342-687) Transferrin {Pig (Sus scrofa) [TaxId:
9823]}
Length = 346
Score = 26.2 bits (57), Expect = 4.9
Identities = 15/97 (15%), Positives = 31/97 (31%), Gaps = 17/97 (17%)
Query: 96 SICLPIYESTQWWKIFGEIECLALLIACLCHDLDHRGTNNSFQINNVSPDEYSRIIKVL- 154
C + T W I + L + ++ + F + + + L
Sbjct: 113 KSCHTAVDRTAGWNIP---------MGLLYNKINSCKFDQFFGEGCAPGSQRNSSLCALC 163
Query: 155 -------EEAILSTDLAVYFRQRGSFLSLVKGGSLAW 184
L+ + Y+ G+F LV+ G +A+
Sbjct: 164 IGSERAPGRECLANNHERYYGYTGAFRCLVEKGDVAF 200
>d1rl4a_ d.167.1.1 (A:) Peptide deformylase {Malaria parasite
(Plasmodium falciparum) [TaxId: 5833]}
Length = 165
Score = 25.6 bits (55), Expect = 5.3
Identities = 8/57 (14%), Positives = 17/57 (29%), Gaps = 2/57 (3%)
Query: 102 YESTQWWKIFGEIECLALLIACLCHDLDHRGTNNSFQINNVSPDEYSRIIKVLEEAI 158
+ H+ DH N + I+ ++ + ++ L E I
Sbjct: 109 ISYYDINGYKHLKILKGIHSRIFQHEFDH--LNGTLFIDKMTQVDKKKVRPKLNELI 163
>d2d3ia2 c.94.1.2 (A:335-686) Ovotransferrin {Chicken (Gallus
gallus) [TaxId: 9031]}
Length = 352
Score = 25.8 bits (56), Expect = 7.3
Identities = 16/91 (17%), Positives = 28/91 (30%), Gaps = 9/91 (9%)
Query: 98 CLPIYESTQWWKIFGEIECLALLIA----CLCHDLDHRGTNNSFQINNVSPDEYSRIIKV 153
C T W I + L+ C + G N+ +
Sbjct: 120 CHTAVGRTAGWVIP-----MGLIHNRTGTCNFDEYFSEGCAPGSPPNSRLCQLCQGSGGI 174
Query: 154 LEEAILSTDLAVYFRQRGSFLSLVKGGSLAW 184
E +++ YF G+ LV+ G +A+
Sbjct: 175 PPEKCVASSHEKYFGYTGALRCLVEKGDVAF 205
>d2o6ia1 a.211.1.1 (A:1-453) Hypothetical protein EF1143
{Enterococcus faecalis [TaxId: 1351]}
Length = 453
Score = 25.9 bits (56), Expect = 7.5
Identities = 8/38 (21%), Positives = 12/38 (31%)
Query: 93 FIDSICLPIYESTQWWKIFGEIECLALLIACLCHDLDH 130
+ + + E L L A L HD+ H
Sbjct: 77 ICEIFQRNYSVERLGENGWNDDERLITLCAALLHDVGH 114
>d1hzma_ c.46.1.1 (A:) Erk2 binding domain of Mapk phosphatase mkp-3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 154
Score = 25.2 bits (54), Expect = 8.1
Identities = 8/86 (9%), Positives = 20/86 (23%), Gaps = 1/86 (1%)
Query: 102 YESTQWWKIFGEIECLALLIACLCHDLDHRGTNNSFQINNVSPDEYSRIIKVLEEAILST 161
++ + L + + + + S + L
Sbjct: 58 IPGIMLRRLQKGNLPVRALFTRGEDRDRFTRRCGTDTVV-LYDESSSDWNENTGGESLLG 116
Query: 162 DLAVYFRQRGSFLSLVKGGSLAWHRE 187
L + G ++GG + E
Sbjct: 117 LLLKKLKDEGCRAFYLEGGFSKFQAE 142
>d1iwpg_ a.23.2.1 (G:) Diol dehydratase, gamma subunit {Klebsiella
pneumoniae [TaxId: 573]}
Length = 138
Score = 24.7 bits (54), Expect = 8.3
Identities = 9/38 (23%), Positives = 13/38 (34%), Gaps = 4/38 (10%)
Query: 248 ELSDKLEPLVEGVRSNKQHWLEIAAEKRKQDERERCAE 285
+ + L P RS++ L IA E A
Sbjct: 86 AIYNALRPF----RSSQAELLAIADELEHTWHATVNAA 119
>d1seja2 d.117.1.1 (A:233-521) Bifunctional enzyme dihydrofolate
reductase-thymidylate synthase, TS domain
{Cryptosporidium hominis [TaxId: 237895]}
Length = 289
Score = 25.4 bits (55), Expect = 9.0
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 18 HDLPSLRVPSAAKLNLHDFKFDDIHMED 45
P L+ + N+ DFK++DI +
Sbjct: 250 RPFPQLKFKRKVE-NIEDFKWEDIELIG 276
>d1f28a_ d.117.1.1 (A:) Thymidylate synthase {Pneumocystis carinii
[TaxId: 4754]}
Length = 295
Score = 25.4 bits (55), Expect = 9.1
Identities = 6/28 (21%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 18 HDLPSLRVPSAAKLNLHDFKFDDIHMED 45
P+L + + ++ DF DD ++++
Sbjct: 256 RPFPTLSLNRSIT-DIEDFTLDDFNIQN 282
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.414
Gapped
Lambda K H
0.267 0.0552 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,094,947
Number of extensions: 50156
Number of successful extensions: 178
Number of sequences better than 10.0: 1
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 38
Length of query: 286
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 202
Effective length of database: 1,254,276
Effective search space: 253363752
Effective search space used: 253363752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.2 bits)