BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14372
(210 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BJC|A Chain A, Crystal Structure Of The Pde5a Catalytic Domain In Complex
With A Novel Inhibitor
Length = 878
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 76/154 (49%), Gaps = 37/154 (24%)
Query: 58 YVAESGEPVNIPDAYLVSTPQIRIPWGC------------GIVCYLAESGEPVNIPDAYL 105
YV + EP+NIPD + R PW ++C ++G+ +
Sbjct: 417 YVKNTMEPLNIPDV----SKDKRFPWTTENTGNVNQQCIRSLLCTPIKNGKKNKVIGVCQ 472
Query: 106 LINKFDDLA-----FSKNDENFVEA--------------YEKAVIAMAKQSVTLDVLSYH 146
L+NK ++ F++NDE F+EA YE AMAKQ VTL+VLSYH
Sbjct: 473 LVNKMEENTGKVKPFNRNDEQFLEAFVIFCGLGIQNTQMYEAVERAMAKQMVTLEVLSYH 532
Query: 147 ASASLEDAQRLRSNNSSLIVPMAKQSVTLDVLSY 180
ASA+ E+ + L+S ++ +VP A Q++ + S+
Sbjct: 533 ASAAEEETRELQS-LAAAVVPSA-QTLKITDFSF 564
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 42 VSTPEIRIPWGCGIVGYVAESGEPVNIPDAY 72
VS IR+ W GIVG+VA GEP+NI DAY
Sbjct: 219 VSNNCIRLEWNKGIVGHVAALGEPLNIKDAY 249
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 74 VSTPQIRIPWGCGIVCYLAESGEPVNIPDAY 104
VS IR+ W GIV ++A GEP+NI DAY
Sbjct: 219 VSNNCIRLEWNKGIVGHVAALGEPLNIKDAY 249
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 17 IPWGCGIVCYLAESGEPVNIPDAY 40
+ W GIV ++A GEP+NI DAY
Sbjct: 226 LEWNKGIVGHVAALGEPLNIKDAY 249
>pdb|3IBJ|A Chain A, X-Ray Structure Of Pde2a
pdb|3IBJ|B Chain B, X-Ray Structure Of Pde2a
Length = 691
Score = 45.1 bits (105), Expect = 3e-05, Method: Composition-based stats.
Identities = 44/164 (26%), Positives = 71/164 (43%), Gaps = 27/164 (16%)
Query: 46 EIRIPWGCGIVGYVAESGEPVNIPDAYLVSTPQIRIPWGCG-----IVCY--LAESGEPV 98
EIRIP GI G+VA +G+ +NIPDAY + G I+C+ E+ E +
Sbjct: 243 EIRIPADQGIAGHVATTGQILNIPDAYAHPLFYRGVDDSTGFRTRNILCFPIKNENQEVI 302
Query: 99 NIPDAYLLINKFDDLAFSKNDENFVEA--------------YEKAVIAMAKQSVTLDVLS 144
+ + L+NK + FSK DE+ A Y+K A + + +++
Sbjct: 303 GVAE---LVNKINGPWFSKFDEDLATAFSIYCGISIAHSLLYKKVNEAQYRSHLANEMMM 359
Query: 145 YHASASLEDAQRLRSNNSSLIVPMAKQSVTLDVLSYHASASLED 188
YH S ++ +L + I P+A +Y + ED
Sbjct: 360 YHMKVSDDEYTKLLHDG---IQPVAAIDSNFASFTYTPRSLPED 400
Score = 28.5 bits (62), Expect = 2.4, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 17 IPWGCGIVCYLAESGEPVNIPDAY 40
IP GI ++A +G+ +NIPDAY
Sbjct: 246 IPADQGIAGHVATTGQILNIPDAY 269
>pdb|1MC0|A Chain A, Regulatory Segment Of Mouse 3',5'-Cyclic Nucleotide
Phosphodiesterase 2a, Containing The Gaf A And Gaf B
Domains
Length = 368
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 10/88 (11%)
Query: 46 EIRIPWGCGIVGYVAESGEPVNIPDAYLVSTPQIRIPWGCG-----IVCY--LAESGEPV 98
EIRIP GI G+VA +G+ +NIPDAY + G I+C+ E+ E +
Sbjct: 243 EIRIPADQGIAGHVATTGQILNIPDAYAHPLFYRGVDDSTGFRTRNILCFPIKNENQEVI 302
Query: 99 NIPDAYLLINKFDDLAFSKNDENFVEAY 126
+ + L+NK + FSK DE+ A+
Sbjct: 303 GVAE---LVNKINGPWFSKFDEDLATAF 327
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 17 IPWGCGIVCYLAESGEPVNIPDAY 40
IP GI ++A +G+ +NIPDAY
Sbjct: 246 IPADQGIAGHVATTGQILNIPDAY 269
>pdb|3LFV|A Chain A, Crystal Structure Of Unliganded Pde5a Gaf Domain
pdb|3LFV|B Chain B, Crystal Structure Of Unliganded Pde5a Gaf Domain
Length = 431
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 42 VSTPEIRIPWGCGIVGYVAESGEPVNIPDAY 72
VS IR+ W GIVG+VA GEP+NI DAY
Sbjct: 127 VSNNCIRLEWNKGIVGHVAALGEPLNIKDAY 157
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 74 VSTPQIRIPWGCGIVCYLAESGEPVNIPDAY 104
VS IR+ W GIV ++A GEP+NI DAY
Sbjct: 127 VSNNCIRLEWNKGIVGHVAALGEPLNIKDAY 157
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 21/86 (24%)
Query: 58 YVAESGEPVNIPDAYLVSTPQIRIPWGC------------GIVCYLAESGEPVNIPDAYL 105
YV + EP+NIPD + R PW ++C ++G+ +
Sbjct: 325 YVKNTMEPLNIPDV----SKDKRFPWTTENTGNVNQQCIRSLLCTPIKNGKKNKVIGVCQ 380
Query: 106 LINKFDDLA-----FSKNDENFVEAY 126
L+NK ++ F++NDE F+EA+
Sbjct: 381 LVNKMEENTGKVKPFNRNDEQFLEAF 406
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 17 IPWGCGIVCYLAESGEPVNIPDAY 40
+ W GIV ++A GEP+NI DAY
Sbjct: 134 LEWNKGIVGHVAALGEPLNIKDAY 157
>pdb|3MF0|A Chain A, Crystal Structure Of Pde5a Gaf Domain (89-518)
pdb|3MF0|B Chain B, Crystal Structure Of Pde5a Gaf Domain (89-518)
Length = 432
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 42 VSTPEIRIPWGCGIVGYVAESGEPVNIPDAY 72
VS IR+ W GIVG+VA GEP+NI DAY
Sbjct: 128 VSNNCIRLEWNKGIVGHVAALGEPLNIKDAY 158
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 74 VSTPQIRIPWGCGIVCYLAESGEPVNIPDAY 104
VS IR+ W GIV ++A GEP+NI DAY
Sbjct: 128 VSNNCIRLEWNKGIVGHVAALGEPLNIKDAY 158
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 21/86 (24%)
Query: 58 YVAESGEPVNIPDAYLVSTPQIRIPWGC------------GIVCYLAESGEPVNIPDAYL 105
YV + EP+NIPD + R PW ++C ++G+ +
Sbjct: 326 YVKNTMEPLNIPDV----SKDKRFPWTTENTGNVNQQCIRSLLCTPIKNGKKNKVIGVCQ 381
Query: 106 LINKFDDLA-----FSKNDENFVEAY 126
L+NK ++ F++NDE F+EA+
Sbjct: 382 LVNKMEENTGKVKPFNRNDEQFLEAF 407
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 17 IPWGCGIVCYLAESGEPVNIPDAY 40
+ W GIV ++A GEP+NI DAY
Sbjct: 135 LEWNKGIVGHVAALGEPLNIKDAY 158
>pdb|2ZMF|A Chain A, Crystal Structure Of The C-Terminal Gaf Domain Of Human
Phosphodiesterase 10a
pdb|2ZMF|B Chain B, Crystal Structure Of The C-Terminal Gaf Domain Of Human
Phosphodiesterase 10a
Length = 189
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 45/104 (43%), Gaps = 15/104 (14%)
Query: 29 ESGEPVNIPDAYLVSTPEIRIPWGCGIVGYVAESGEPVNIPDAYLVSTPQIRIPWGCG-- 86
+ G+PV T EIR GI G VA +GE +NIPDAY + G
Sbjct: 72 KEGKPV------FKKTKEIRFSIEKGIAGQVARTGEVLNIPDAYADPRFNREVDLYTGYT 125
Query: 87 ---IVCY-LAESGEPVNIPDAYLLINKFDDLAFSKNDENFVEAY 126
I+C + G + + +NK AFSK DEN + +
Sbjct: 126 TRNILCXPIVSRGSVIGVVQX---VNKISGSAFSKTDENNFKXF 166
>pdb|2K31|A Chain A, Solution Structure Of Cgmp-Binding Gaf Domain Of
Phosphodiesterase 5
Length = 176
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 20/26 (76%)
Query: 47 IRIPWGCGIVGYVAESGEPVNIPDAY 72
IR+ W GIVG+VA GEP+NI DAY
Sbjct: 59 IRLEWNKGIVGHVAAFGEPLNIKDAY 84
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 79 IRIPWGCGIVCYLAESGEPVNIPDAY 104
IR+ W GIV ++A GEP+NI DAY
Sbjct: 59 IRLEWNKGIVGHVAAFGEPLNIKDAY 84
Score = 33.9 bits (76), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 7 LSRASYLLYSIPWGCGIVCYLAESGEPVNIPDAY 40
L AS + W GIV ++A GEP+NI DAY
Sbjct: 51 LEEASNNCIRLEWNKGIVGHVAAFGEPLNIKDAY 84
>pdb|1YKD|A Chain A, Crystal Structure Of The Tandem Gaf Domains From A
Cyanobacterial Adenylyl Cyclase: Novel Modes Of
Ligand-Binding And Dimerization
pdb|1YKD|B Chain B, Crystal Structure Of The Tandem Gaf Domains From A
Cyanobacterial Adenylyl Cyclase: Novel Modes Of
Ligand-Binding And Dimerization
Length = 398
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 28/111 (25%)
Query: 43 STPEIRIPWGCGIVGYVAESGEPVNIP-DAY----LVSTPQIRIPWG---CGIVCYLAES 94
ST E+R+P G G G VA SG+ +NIP D Y + QI G C ++C +
Sbjct: 257 STKELRVPIGKGFAGIVAASGQKLNIPFDLYDHPDSATAKQIDQQNGYRTCSLLCMPVFN 316
Query: 95 GE-------------------PVNIPDAYLLINKFDDLAFSKNDENFVEAY 126
G+ P N P+ + + + +F +NDE F+EA+
Sbjct: 317 GDQELIGVTQLVNKKKTGEFPPYN-PETWPIAPECFQASFDRNDEEFMEAF 366
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 45/106 (42%), Gaps = 29/106 (27%)
Query: 46 EIRIPWGCGIVGYVAESGEPVNIP-DAY-----LVSTPQIRIPWGCGIVCY-------LA 92
EIRIP GI G VA + VNIP D Y + + Q +I G Y L+
Sbjct: 73 EIRIPADKGIAGEVATFKQVVNIPFDFYHDPRSIFAQKQEKI---TGYRTYTMLALPLLS 129
Query: 93 ESG------------EPVNIPDAYLLINKFDDLAFSKNDENFVEAY 126
E G +P + PDA LL + D+ F+ DE + +
Sbjct: 130 EQGRLVAVVQLLNKLKPYSPPDA-LLAERIDNQGFTSADEQLFQEF 174
>pdb|2XSS|A Chain A, Crystal Structure Of Gafb From The Human Phosphodiesterase
5
pdb|2XSS|B Chain B, Crystal Structure Of Gafb From The Human Phosphodiesterase
5
Length = 181
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 21/86 (24%)
Query: 58 YVAESGEPVNIPDAYLVSTPQIRIPWGC------------GIVCYLAESGEPVNIPDAYL 105
YV + EP+NIPD + R PW ++C ++G+ +
Sbjct: 85 YVKNTMEPLNIPDV----SKDKRFPWTTENTGNVNQQCIRSLLCTPIKNGKKNKVIGVCQ 140
Query: 106 LINKFDDLA-----FSKNDENFVEAY 126
L+NK ++ F++NDE F+EA+
Sbjct: 141 LVNKMEENTGKVKPFNRNDEQFLEAF 166
>pdb|3TRC|A Chain A, Structure Of The Gaf Domain From A
Phosphoenolpyruvate-Protein Phosphotransferase (Ptsp)
From Coxiella Burnetii
Length = 171
Score = 34.7 bits (78), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 16/108 (14%)
Query: 46 EIRIPWGCGIVGYVAESGEPVNIPDAYLVSTPQIRIPWG-------CGIVCYLAESGEPV 98
++R+ +G G++G V E EP+N+ DA L + R G GI + E GE +
Sbjct: 70 KLRLKFGEGLIGLVGEREEPINLADAPLHPAYKHRPELGEEDYHGFLGIP--IIEQGELL 127
Query: 99 NIPDAYLLINKFDDLAFSKNDENF---VEAYEKAVIAMAKQSVTLDVL 143
I L+I + + F++ +E F + + A IA A+ L+ L
Sbjct: 128 GI----LVIQQLESHHFAEEEEAFCVTLAIHLAAEIAHARAKGALEKL 171
>pdb|2V25|A Chain A, Structure Of The Campylobacter Jejuni Antigen Peb1a, An
Aspartate And Glutamate Receptor With Bound Aspartate
pdb|2V25|B Chain B, Structure Of The Campylobacter Jejuni Antigen Peb1a, An
Aspartate And Glutamate Receptor With Bound Aspartate
Length = 259
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 25/36 (69%)
Query: 101 PDAYLLINKFDDLAFSKNDENFVEAYEKAVIAMAKQ 136
P +Y ++ K DD AF+K ++FV+ ++ + A+AK+
Sbjct: 221 PQSYGIVTKKDDPAFAKYVDDFVKEHKNEIDALAKK 256
>pdb|1Q1Z|A Chain A, Crystal Structure Of Human Cholesterol Sulfotransferase
(Sult2b1b) In The Presence Of Pap
pdb|1Q20|A Chain A, Crystal Structure Of Human Cholesterol Sulfotransferase
(Sult2b1b) In The Presence Of Pap And Pregnenolone
pdb|1Q22|A Chain A, Crystal Structure Of Human Cholesterol Sulfotransferase
(sult2b1b) In The Presence Of Dhea And Pap
Length = 299
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 10/39 (25%), Positives = 22/39 (56%)
Query: 59 VAESGEPVNIPDAYLVSTPQIRIPWGCGIVCYLAESGEP 97
+AE+ + V D ++++ P+ W I+C + + G+P
Sbjct: 38 LAENTQDVRDDDIFIITYPKSGTTWMIEIICLILKEGDP 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,015,335
Number of Sequences: 62578
Number of extensions: 255491
Number of successful extensions: 722
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 667
Number of HSP's gapped (non-prelim): 42
length of query: 210
length of database: 14,973,337
effective HSP length: 95
effective length of query: 115
effective length of database: 9,028,427
effective search space: 1038269105
effective search space used: 1038269105
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)