Query psy14372
Match_columns 210
No_of_seqs 227 out of 806
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 18:11:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14372.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14372hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ibj_A CGMP-dependent 3',5'-cy 99.7 7.8E-17 2.7E-21 154.5 7.6 141 44-194 241-405 (691)
2 3dba_A CONE CGMP-specific 3',5 99.6 3.4E-17 1.1E-21 131.6 3.2 120 8-134 41-171 (180)
3 3bjc_A CGMP-specific 3',5'-cyc 99.4 6.2E-15 2.1E-19 145.3 -1.8 142 46-194 405-577 (878)
4 2zmf_A CAMP and CAMP-inhibited 99.2 1.6E-11 5.5E-16 95.6 5.4 87 42-132 79-172 (189)
5 2e4s_A CAMP and CAMP-inhibited 99.1 1.3E-10 4.3E-15 90.9 5.7 86 44-133 81-173 (189)
6 3mmh_A FRMSR, methionine-R-sul 99.0 4.1E-10 1.4E-14 91.1 7.2 77 45-130 74-156 (167)
7 3rfb_A Putative uncharacterize 99.0 5.6E-10 1.9E-14 91.0 6.6 76 45-129 74-155 (171)
8 1vhm_A Protein YEBR; structura 99.0 1.1E-09 3.7E-14 90.7 7.3 79 44-131 84-168 (195)
9 3ksh_A Putative uncharacterize 99.0 6.7E-10 2.3E-14 89.6 5.6 76 45-129 73-154 (160)
10 1f5m_A GAF; CGMP binding, sign 98.9 8.5E-10 2.9E-14 89.7 6.2 78 44-130 89-173 (180)
11 2vjw_A GAF-B, GAF family prote 98.8 1.4E-08 4.7E-13 79.4 7.9 72 45-131 52-129 (149)
12 1ykd_A Adenylate cyclase; GAF 98.8 2.7E-09 9.4E-14 94.0 3.3 78 44-125 71-173 (398)
13 1ykd_A Adenylate cyclase; GAF 98.7 8.8E-09 3E-13 90.7 5.3 86 44-133 258-373 (398)
14 1mc0_A 3',5'-cyclic nucleotide 98.7 2.2E-08 7.5E-13 86.8 7.6 87 44-134 241-335 (368)
15 3bjc_A CGMP-specific 3',5'-cyc 98.7 1.5E-09 5.3E-14 106.9 0.0 81 44-128 221-311 (878)
16 3oov_A Methyl-accepting chemot 98.6 8.4E-08 2.9E-12 72.9 8.0 86 45-134 63-160 (169)
17 3trc_A Phosphoenolpyruvate-pro 98.6 1.2E-07 4.2E-12 72.1 7.3 82 46-132 70-157 (171)
18 2w3g_A DOSS, two component sen 98.6 1.5E-07 5.1E-12 70.2 7.1 82 48-134 56-143 (153)
19 3e0y_A Conserved domain protei 98.6 1.5E-07 5.2E-12 72.1 7.3 83 45-132 74-162 (181)
20 3ibj_A CGMP-dependent 3',5'-cy 98.5 3.3E-08 1.1E-12 94.6 2.9 76 46-127 74-157 (691)
21 3cit_A Sensor histidine kinase 98.5 1.3E-07 4.4E-12 76.4 5.7 59 68-133 78-144 (160)
22 1mc0_A 3',5'-cyclic nucleotide 98.5 6.4E-08 2.2E-12 83.8 3.5 76 45-126 72-156 (368)
23 3ci6_A Phosphoenolpyruvate-pro 98.3 1.2E-06 4.1E-11 65.7 7.1 84 46-134 72-161 (171)
24 3k2n_A Sigma-54-dependent tran 98.3 1.2E-06 4.1E-11 67.4 6.7 86 44-134 68-164 (177)
25 3o5y_A Sensor protein; GAF dom 98.0 2.9E-06 1E-10 67.5 3.4 78 46-128 52-135 (165)
26 3hcy_A Putative two-component 98.0 3.3E-06 1.1E-10 63.7 2.9 77 50-131 51-134 (151)
27 2k2n_A Sensor protein, SYB-CPH 97.9 1.9E-06 6.5E-11 67.4 1.1 78 52-134 77-165 (172)
28 3p01_A Two-component response 97.9 3.8E-06 1.3E-10 66.1 2.1 77 49-131 92-174 (184)
29 2lb5_A Sensor histidine kinase 97.7 5.6E-06 1.9E-10 66.3 0.8 80 52-136 107-197 (208)
30 2qyb_A Membrane protein, putat 97.6 2.6E-05 8.8E-10 60.3 3.1 80 48-131 67-153 (181)
31 4glq_A Methyl-accepting chemot 94.3 0.03 1E-06 44.1 3.4 80 47-130 60-148 (171)
32 1tbf_A CGMP-specific 3',5'-cyc 93.8 0.0079 2.7E-07 53.7 -0.9 51 141-194 12-62 (347)
33 2our_A CAMP and CAMP-inhibited 80.2 0.17 5.9E-06 44.6 -2.0 40 144-189 1-40 (331)
34 3itu_A CGMP-dependent 3',5'-cy 58.0 1.1 3.9E-05 39.6 -1.8 43 148-195 2-45 (345)
35 3eea_A GAF domain/HD domain pr 28.0 46 0.0016 26.1 3.2 69 59-132 78-152 (162)
36 2o8m_C Protease; NS3, NS4A, vi 25.5 8 0.00027 21.5 -1.1 18 54-71 6-23 (26)
37 2w1r_A Spovt, stage V sporulat 24.9 67 0.0023 23.4 3.6 65 50-125 42-112 (123)
No 1
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=99.66 E-value=7.8e-17 Score=154.50 Aligned_cols=141 Identities=27% Similarity=0.345 Sum_probs=118.1
Q ss_pred CCeeEeeCCCchhHHhhhcCceEeecCCCCCCCCCCCcccCCC-Cccceecccceeecc-------chhhhhccCCCCCC
Q psy14372 44 TPEIRIPWGCGIVGYVAESGEPVNIPDAYLVSTPQIRIPWGCG-IVCYLAESGEPVNIP-------DAYLLINKFDDLAF 115 (210)
Q Consensus 44 ~~~i~ipi~~gIaG~Va~tg~~lnI~D~~~~~~~D~rF~~~~d-~tGy~t~s~l~vPI~-------~V~qliNK~~g~~F 115 (210)
...+++|++.|++|+|+.+|++++|+|++. |+||....+ .+|+.++|.+|+||. ||+.+.|+..+.+|
T Consensus 241 ~~~~~~~~~~gi~g~v~~~g~~v~i~d~~~----d~~~~~~~~~~~g~~~rS~L~vPL~~~~g~viGVL~l~~~~~~~~f 316 (691)
T 3ibj_A 241 SYEIRIPADQGIAGHVATTGQILNIPDAYA----HPLFYRGVDDSTGFRTRNILCFPIKNENQEVIGVAELVNKINGPWF 316 (691)
T ss_dssp CCEEEEETTSHHHHHHHHHCSCEEESCSTT----STTC------CCSCCCCCEEEEECCCSSSCCCEEEEEEEESSSSSC
T ss_pred ccceeccCCCCHHHHHHHhCCEEEecCccc----CccccchhhcccCCeeeeEEEEeEECCCCCEEEEEEEEECCCCCCC
Confidence 467899999999999999999999999999 999987765 689999999999995 58889999888899
Q ss_pred ChhhHHHHHH--------------HHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHccCCCcCCCccccce--eEeeEE
Q psy14372 116 SKNDENFVEA--------------YEKAVIAMAKQSVTLDVLSYHASASLEDAQRLRSNNSSLIVPMAKQSV--TLDVLS 179 (210)
Q Consensus 116 t~~De~~le~--------------ye~~~~~~ak~~v~levLsyH~~~s~~e~~~l~~~~~~~~ip~~~~~~--~l~~~~ 179 (210)
++.|..++++ |++..+...+++++.|+++||++++.+|+++|+. ..+|+.. .+ .+..|+
T Consensus 317 ~~~d~~ll~~lA~~~aiAIena~l~~~l~~~~~~~~~~~e~l~~~~~~~~~e~~~ll~----~~i~~~~-~~~~~~~~f~ 391 (691)
T 3ibj_A 317 SKFDEDLATAFSIYCGISIAHSLLYKKVNEAQYRSHLANEMMMYHMKVSDDEYTKLLH----DGIQPVA-AIDSNFASFT 391 (691)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHHHCS----SCCCCST-TTCTTTTSTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHh----cCCCchh-hhhhhccccc
Confidence 9999999987 7888889999999999999999999999999987 5577764 33 677788
Q ss_pred EecCCChhHHHHHHH
Q psy14372 180 YHASASLEDAQRLRR 194 (210)
Q Consensus 180 fh~d~~~~e~~~l~~ 194 (210)
| .+.++++.+.+++
T Consensus 392 f-~~~~l~~~~~~~~ 405 (691)
T 3ibj_A 392 Y-TPRSLPEDDTSMA 405 (691)
T ss_dssp C-CGGGSCSSSHHHH
T ss_pred c-CCcCCCchHHHHH
Confidence 8 5666666666554
No 2
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus}
Probab=99.65 E-value=3.4e-17 Score=131.63 Aligned_cols=120 Identities=22% Similarity=0.247 Sum_probs=91.0
Q ss_pred ccccceeeeccccCCchhhhhhcccccCCCCcc----cCCCCeeEeeCCCchhHHhhhcCceEeecCCCCCCCCCCCccc
Q psy14372 8 SRASYLLYSIPWGCGIVCYLAESGEPVNIPDAY----LVSTPEIRIPWGCGIVGYVAESGEPVNIPDAYLVSTPQIRIPW 83 (210)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l----~~~~~~i~ipi~~gIaG~Va~tg~~lnI~D~~~~~~~D~rF~~ 83 (210)
++|+++|++-..+. ..|..+.+.+..+..+ ......+++|++.||+|||+.||+|++|+|++. |+||..
T Consensus 41 ~~~~i~L~d~~~~~---~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~g~v~~tg~~v~i~d~~~----d~~f~~ 113 (180)
T 3dba_A 41 DRCSMFICRSRNGI---PEVATRLLNVTPTSKFEDNLVNPDKETVFPLDIGIAGWVAHTKKFFNIPDVKK----NNHFSD 113 (180)
T ss_dssp EEEEEEEEEEETTE---EEEEEEEEEECTTCCHHHHBCCGGGCCEECTTSSHHHHHHHHTCCEEESCGGG----CTTCCC
T ss_pred ceEEEEEEeCCCCc---ceeeeeeeccccCccchhhccccccceeeeCCCCHHHHHHHhCCEEEecCCCC----CcccCh
Confidence 67888888765432 2233333322222111 122356789999999999999999999999999 999986
Q ss_pred CCC-Cccceecccceeecc------chhhhhccCCCCCCChhhHHHHHHHHHHHHHHH
Q psy14372 84 GCG-IVCYLAESGEPVNIP------DAYLLINKFDDLAFSKNDENFVEAYEKAVIAMA 134 (210)
Q Consensus 84 ~~d-~tGy~t~s~l~vPI~------~V~qliNK~~g~~Ft~~De~~le~ye~~~~~~a 134 (210)
..+ .+||.++|++|+||. ||+++.||..+.+|++.|+++++++...+..-.
T Consensus 114 ~~~~~~~~~~~S~L~vPl~~~~~viGVL~l~n~~~~~~Ft~~d~~lL~~lA~~aa~~i 171 (180)
T 3dba_A 114 YLDKKTGYTTVNMMAIPITQGKEVLAVVMALNKLNASEFSKEDEEVFKKYLNFISLVL 171 (180)
T ss_dssp HHHHHHCCCCCCEEEEEEEETTEEEEEEEEEEESSSSSCCHHHHHHHHHHHHHHHHHT
T ss_pred hhccccCccccEEEEEEeccCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 555 579999999999996 699999999888999999999999877765543
No 3
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=99.43 E-value=6.2e-15 Score=145.31 Aligned_cols=142 Identities=35% Similarity=0.465 Sum_probs=29.4
Q ss_pred eeEeeCCCchhHHhhhcCceEeecCCCCCCCCCCCcccCCC-Ccc---ceecccceeecc--------chhhhhccCCC-
Q psy14372 46 EIRIPWGCGIVGYVAESGEPVNIPDAYLVSTPQIRIPWGCG-IVC---YLAESGEPVNIP--------DAYLLINKFDD- 112 (210)
Q Consensus 46 ~i~ipi~~gIaG~Va~tg~~lnI~D~~~~~~~D~rF~~~~d-~tG---y~t~s~l~vPI~--------~V~qliNK~~g- 112 (210)
..++|++.|++|+|+.+|++++|+|++. |+||+...+ .+| |.++|++|+||. ||++++|+..|
T Consensus 405 ~~~~p~~~gi~g~v~~~g~~v~i~D~~~----d~r~~~~~~~~~g~~~~~~rS~L~vPL~~~~~g~viGVL~l~~~~~~~ 480 (878)
T 3bjc_A 405 HDANKINYMYAQYVKNTMEPLNIPDVSK----DKRFPWTTENTGNVNQQCIRSLLCTPIKNGKKNKVIGVCQLVNKMEEN 480 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccchhhhHHHHHhhcCCeeeecCccc----ccccccccccccCccccccceEEEEEEecCCCCcEEEEEEEEEcCCCc
Confidence 6789999999999999999999999998 999987776 577 899999999984 47889999876
Q ss_pred ----CCCChhhHHHHHH--------------HHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHccCCCcCCCcccccee
Q psy14372 113 ----LAFSKNDENFVEA--------------YEKAVIAMAKQSVTLDVLSYHASASLEDAQRLRSNNSSLIVPMAKQSVT 174 (210)
Q Consensus 113 ----~~Ft~~De~~le~--------------ye~~~~~~ak~~v~levLsyH~~~s~~e~~~l~~~~~~~~ip~~~~~~~ 174 (210)
.+|++.|+.++++ |+++.++..++++++|+|+||..++.+|+++++.. .+..+|... .+.
T Consensus 481 ~G~~~~Ft~~d~~lL~~lA~~aaiAIenarl~e~l~~~~~~~~~a~e~Ls~~~~~~~ee~~~l~~~-l~~~lp~~~-~~~ 558 (878)
T 3bjc_A 481 TGKVKPFNRNDEQFLEAFVIFCGLGIQNTQMYEAVERAMAKQMVTLEVLSYHASAAEEETRELQSL-AAAVVPSAQ-TLK 558 (878)
T ss_dssp ---------------------------------------------------------CCHHHHHHH-HHSCCCCHH-HHT
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhhcCCHHHHHHhccc-ccccCCchh-hhc
Confidence 6899999999987 77888888999999999999999999999998731 124578775 578
Q ss_pred EeeEEEecCCChhHHHHHHH
Q psy14372 175 LDVLSYHASASLEDAQRLRR 194 (210)
Q Consensus 175 l~~~~fh~d~~~~e~~~l~~ 194 (210)
++.+.| ..+++++.+.+++
T Consensus 559 ~~~~~F-d~f~l~~~e~~~~ 577 (878)
T 3bjc_A 559 ITDFSF-SDFELSDLETALC 577 (878)
T ss_dssp TTCTTC-CCTTCCHHHHHHH
T ss_pred cccccc-eeeecCchhHHHH
Confidence 888889 7888888887664
No 4
>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens}
Probab=99.19 E-value=1.6e-11 Score=95.60 Aligned_cols=87 Identities=33% Similarity=0.400 Sum_probs=74.6
Q ss_pred CCCCeeEeeCCCchhHHhhhcCceEeecCCCCCCCCCCCcccCCC-Cccceecccceeecc------chhhhhccCCCCC
Q psy14372 42 VSTPEIRIPWGCGIVGYVAESGEPVNIPDAYLVSTPQIRIPWGCG-IVCYLAESGEPVNIP------DAYLLINKFDDLA 114 (210)
Q Consensus 42 ~~~~~i~ipi~~gIaG~Va~tg~~lnI~D~~~~~~~D~rF~~~~d-~tGy~t~s~l~vPI~------~V~qliNK~~g~~ 114 (210)
.....+++|.+.|++|+|+.+|+++.++|+.. |++|..... ..++.+++++|+||. ||+.++|+..+.+
T Consensus 79 ~~~~~~~~~~~~~~~~~v~~~~~~~~i~d~~~----~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~l~~~~~~~~ 154 (189)
T 2zmf_A 79 KKTKEIRFSIEKGIAGQVARTGEVLNIPDAYA----DPRFNREVDLYTGYTTRNILCMPIVSRGSVIGVVQMVNKISGSA 154 (189)
T ss_dssp EECCCCEEETTSHHHHHHHHHCCCEEESCGGG----STTCCTHHHHHHCCCCCCEEEEEEEETTEEEEEEEEEEETTSSS
T ss_pred ccccccccCCCccHHHHHHHhCCeEEEecccc----cccccccchhhcccccceEEEeeecccCceeeEEEEEEcCCCCC
Confidence 34567899999999999999999999999998 899876554 577889999999996 5888899998889
Q ss_pred CChhhHHHHHHHHHHHHH
Q psy14372 115 FSKNDENFVEAYEKAVIA 132 (210)
Q Consensus 115 Ft~~De~~le~ye~~~~~ 132 (210)
|++.|.++++.+......
T Consensus 155 f~~~d~~ll~~lA~q~a~ 172 (189)
T 2zmf_A 155 FSKTDENNFKMFAVFCAL 172 (189)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHH
Confidence 999999999997665443
No 5
>2e4s_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; GAF domain, structural genomics, NPPSFA; HET: MSE CMP; 2.10A {Homo sapiens} PDB: 2zmf_A*
Probab=99.07 E-value=1.3e-10 Score=90.86 Aligned_cols=86 Identities=34% Similarity=0.408 Sum_probs=73.9
Q ss_pred CCeeEeeCCCchhHHhhhcCceEeecCCCCCCCCCCCcccCCC-Cccceecccceeecc------chhhhhccCCCCCCC
Q psy14372 44 TPEIRIPWGCGIVGYVAESGEPVNIPDAYLVSTPQIRIPWGCG-IVCYLAESGEPVNIP------DAYLLINKFDDLAFS 116 (210)
Q Consensus 44 ~~~i~ipi~~gIaG~Va~tg~~lnI~D~~~~~~~D~rF~~~~d-~tGy~t~s~l~vPI~------~V~qliNK~~g~~Ft 116 (210)
....++|++.|++|+|+.+|+++.|+|+.. |++|....+ ..|+.++|++|+||. ||+.+.|+..+..|+
T Consensus 81 ~~~~~~~~~~~~~~~v~~~~~~~~i~d~~~----~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~iGvl~l~~~~~~~~f~ 156 (189)
T 2e4s_A 81 TKEIRFSIEKGIAGQVARTGEVLNIPDAYA----DPRFNREVDLYTGYTTRNILCMPIVSRGSVIGVVQMVNKISGSAFS 156 (189)
T ss_dssp CCCCEEETTSHHHHHHHHHCCCEEESCGGG----STTCCTHHHHHHCCCCCCEEEEEEEETTEEEEEEEEEEETTSSSCC
T ss_pred CcceEeeCCCcHHHHHHHhCCEEEecCCCc----CcccChhhccccCCccceEEEEEeccCCeEEEEEEEEeCCCCCCCC
Confidence 457789999999999999999999999998 999976544 578889999999995 688899998877999
Q ss_pred hhhHHHHHHHHHHHHHH
Q psy14372 117 KNDENFVEAYEKAVIAM 133 (210)
Q Consensus 117 ~~De~~le~ye~~~~~~ 133 (210)
+.|..+++.+.......
T Consensus 157 ~~d~~ll~~la~~~a~a 173 (189)
T 2e4s_A 157 KTDENNFKMFAVFCALA 173 (189)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999976655443
No 6
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0
Probab=99.03 E-value=4.1e-10 Score=91.08 Aligned_cols=77 Identities=19% Similarity=0.178 Sum_probs=63.6
Q ss_pred CeeEeeCCCchhHHhhhcCceEeecCCCCCCCCCCCcccCCCCccceecccceeecc------chhhhhccCCCCCCChh
Q psy14372 45 PEIRIPWGCGIVGYVAESGEPVNIPDAYLVSTPQIRIPWGCGIVCYLAESGEPVNIP------DAYLLINKFDDLAFSKN 118 (210)
Q Consensus 45 ~~i~ipi~~gIaG~Va~tg~~lnI~D~~~~~~~D~rF~~~~d~tGy~t~s~l~vPI~------~V~qliNK~~g~~Ft~~ 118 (210)
.+.++|+++||+|+|+.+|++++|+|++. ||||... ...++|.+|+||. ||+.+-++.. ..|++.
T Consensus 74 ~~~~i~~geGi~G~v~~~g~~~~v~Dv~~----~p~~~~~----~~~~~S~i~vPi~~~g~viGVL~i~s~~~-~~F~~~ 144 (167)
T 3mmh_A 74 ACTRIPFGRGVCGQAWAKGGTVVVGDVDA----HPDHIAC----SSLSRSEIVVPLFSDGRCIGVLDADSEHL-AQFDET 144 (167)
T ss_dssp CCSEEETTSHHHHHHHHHTSCEEESCGGG----STTCCCS----STTCCEEEEEEEEETTEEEEEEEEEESST-TCCCHH
T ss_pred cceEeccCCChHHHHHhCCcEEEECCccc----Ccchhhc----CccCCeEEEEEeccCCEEEEEEEEecCCC-CCCCHH
Confidence 46899999999999999999999999999 9998532 2357899999996 5777666544 479999
Q ss_pred hHHHHHHHHHHH
Q psy14372 119 DENFVEAYEKAV 130 (210)
Q Consensus 119 De~~le~ye~~~ 130 (210)
|+.+|+......
T Consensus 145 d~~~L~~lA~~l 156 (167)
T 3mmh_A 145 DALYLGELAKIL 156 (167)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999965543
No 7
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae}
Probab=98.99 E-value=5.6e-10 Score=91.04 Aligned_cols=76 Identities=24% Similarity=0.240 Sum_probs=61.8
Q ss_pred CeeEeeCCCchhHHhhhcCceEeecCCCCCCCCCCCcccCCCCccceecccceeecc------chhhhhccCCCCCCChh
Q psy14372 45 PEIRIPWGCGIVGYVAESGEPVNIPDAYLVSTPQIRIPWGCGIVCYLAESGEPVNIP------DAYLLINKFDDLAFSKN 118 (210)
Q Consensus 45 ~~i~ipi~~gIaG~Va~tg~~lnI~D~~~~~~~D~rF~~~~d~tGy~t~s~l~vPI~------~V~qliNK~~g~~Ft~~ 118 (210)
.++++|+++||+|+||.+|++++|+|+.. ||||.. .+ ..++|.+|+||. ||+.+-++.. ..|++.
T Consensus 74 a~~ri~~GeGv~G~va~tg~~i~V~Dv~~----~p~~i~-~~---~~~~Sei~VPI~~~g~viGVL~i~s~~~-~~F~e~ 144 (171)
T 3rfb_A 74 SCIRIALGKGVCGEAAHFQETVIVGDVTT----YLNYIS-CD---SLAKSEIVVPMMKNGQLLGVLDLDSSEI-EDYDAM 144 (171)
T ss_dssp CCCEEETTSHHHHHHHHTTSCEEESCTTS----CSSCCC-SC---TTCCEEEEEEEEETTEEEEEEEEEESST-TCCCHH
T ss_pred cceEeeCCcCHHHHHHhhCCEEEECCccc----Cccccc-cC---cccCceEEEEEEECCEEEEEEEEecCCC-CCCCHH
Confidence 47899999999999999999999999999 999853 22 246899999996 5666655443 479999
Q ss_pred hHHHHHHHHHH
Q psy14372 119 DENFVEAYEKA 129 (210)
Q Consensus 119 De~~le~ye~~ 129 (210)
|+.+|+.....
T Consensus 145 D~~~L~~lA~~ 155 (171)
T 3rfb_A 145 DRDYLEQFVAI 155 (171)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999985443
No 8
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1
Probab=98.96 E-value=1.1e-09 Score=90.73 Aligned_cols=79 Identities=15% Similarity=0.079 Sum_probs=64.8
Q ss_pred CCeeEeeCCCchhHHhhhcCceEeecCCCCCCCCCCCcccCCCCccceecccceeecc------chhhhhccCCCCCCCh
Q psy14372 44 TPEIRIPWGCGIVGYVAESGEPVNIPDAYLVSTPQIRIPWGCGIVCYLAESGEPVNIP------DAYLLINKFDDLAFSK 117 (210)
Q Consensus 44 ~~~i~ipi~~gIaG~Va~tg~~lnI~D~~~~~~~D~rF~~~~d~tGy~t~s~l~vPI~------~V~qliNK~~g~~Ft~ 117 (210)
..++++|+++||+|+||.+|++++|+|++. ||||... + ..++|++|+||. ||+.+-++.. ..|++
T Consensus 84 ~~~~~i~~GeGi~G~aa~tg~~i~V~Dv~~----~p~~~~~-~---~~~~S~l~VPI~~~g~viGVL~i~s~~~-~~F~e 154 (195)
T 1vhm_A 84 IACVRIPVGRGVCGTAVARNQVQRIEDVHV----FDGHIAC-D---AASNSEIVLPLVVKNQIIGVLDIDSTVF-GRFTD 154 (195)
T ss_dssp CCCSEEETTSHHHHHHHHHTSCEEESCTTT----CTTCCCS-C---CCCSEEEEEEEEETTEEEEEEEEEESST-TCCCH
T ss_pred ccceEecCCCChHHHHHhcCCEEEECCccc----Ccchhhc-C---CCccEEEEEeEeECCEEEEEEEecCCCC-CCCCH
Confidence 358899999999999999999999999998 9998542 2 246999999996 5777766554 37999
Q ss_pred hhHHHHHHHHHHHH
Q psy14372 118 NDENFVEAYEKAVI 131 (210)
Q Consensus 118 ~De~~le~ye~~~~ 131 (210)
.|+.+++.+.....
T Consensus 155 ~d~~~L~~lA~~ia 168 (195)
T 1vhm_A 155 EDEQGLRQLVAQLE 168 (195)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999765543
No 9
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A*
Probab=98.95 E-value=6.7e-10 Score=89.59 Aligned_cols=76 Identities=21% Similarity=0.181 Sum_probs=61.6
Q ss_pred CeeEeeCCCchhHHhhhcCceEeecCCCCCCCCCCCcccCCCCccceecccceeecc------chhhhhccCCCCCCChh
Q psy14372 45 PEIRIPWGCGIVGYVAESGEPVNIPDAYLVSTPQIRIPWGCGIVCYLAESGEPVNIP------DAYLLINKFDDLAFSKN 118 (210)
Q Consensus 45 ~~i~ipi~~gIaG~Va~tg~~lnI~D~~~~~~~D~rF~~~~d~tGy~t~s~l~vPI~------~V~qliNK~~g~~Ft~~ 118 (210)
.+.++|+++||+|+||.+|++++|+|+.. ||||.. .+ ..++|.+|+||. ||+.+-++.. ..|++.
T Consensus 73 a~~ri~~GeGv~G~aa~~~~~i~V~Dv~~----~p~~i~-~~---~~~~Sei~VPI~~~g~viGVL~i~s~~~-~~F~e~ 143 (160)
T 3ksh_A 73 ACVHIPIGKGVCGTAVSERRTQVVADVHQ----FKGHIA-CD---ANSKSEIVVPIFKDDKIIGVLDIDAPIT-DRFDDN 143 (160)
T ss_dssp CCSEEETTSHHHHHHHHHTSCEEESCGGG----STTCCG-GG---TTCSEEEEEEEEETTEEEEEEEEEESSS-SCCCHH
T ss_pred ccEEeeCCCCHHHHHHhhCCEEEECCccc----Cccccc-cC---cccCceEEEEEEECCEEEEEEEEecCCC-CCCCHH
Confidence 47899999999999999999999999999 999843 21 246899999996 5666655443 479999
Q ss_pred hHHHHHHHHHH
Q psy14372 119 DENFVEAYEKA 129 (210)
Q Consensus 119 De~~le~ye~~ 129 (210)
|+.+|+.....
T Consensus 144 D~~~L~~lA~~ 154 (160)
T 3ksh_A 144 DKEHLEAIVKI 154 (160)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999985543
No 10
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A*
Probab=98.95 E-value=8.5e-10 Score=89.71 Aligned_cols=78 Identities=21% Similarity=0.103 Sum_probs=64.9
Q ss_pred CCeeEeeCCCchhHHhhhcCceEeecCCCCCCCCCCCcccCCCCccceecccceeecc-------chhhhhccCCCCCCC
Q psy14372 44 TPEIRIPWGCGIVGYVAESGEPVNIPDAYLVSTPQIRIPWGCGIVCYLAESGEPVNIP-------DAYLLINKFDDLAFS 116 (210)
Q Consensus 44 ~~~i~ipi~~gIaG~Va~tg~~lnI~D~~~~~~~D~rF~~~~d~tGy~t~s~l~vPI~-------~V~qliNK~~g~~Ft 116 (210)
..++++|+++|++|+||.+|++++|+|++. ||||.. .++.++|.+|+||. ||+++.++.. ..|+
T Consensus 89 ~~~~~i~~g~Gi~G~aa~~g~~v~v~Dv~~----dp~~~~----~~~~~~S~l~vPi~~~~g~viGVL~l~s~~~-~~F~ 159 (180)
T 1f5m_A 89 VACQMIQFGKGVCGTAASTKETQIVPDVNK----YPGHIA----CDGETKSEIVVPIISNDGKTLGVIDIDCLDY-EGFD 159 (180)
T ss_dssp CCCSEEETTSHHHHHHHHHTSCEEESCGGG----STTCCC----SSTTCCEEEEEEEECTTSCEEEEEEEEESST-TCCC
T ss_pred ccceeecCCCcchhhhhhcCCEEEeCCccc----Cccccc----cCcccceEEEEEEEcCCCeEEEEEEeccCCC-CCcC
Confidence 347899999999999999999999999999 999963 24567999999996 4677766654 4799
Q ss_pred hhhHHHHHHHHHHH
Q psy14372 117 KNDENFVEAYEKAV 130 (210)
Q Consensus 117 ~~De~~le~ye~~~ 130 (210)
+.|+.+++.+....
T Consensus 160 ~~d~~~L~~la~~~ 173 (180)
T 1f5m_A 160 HVDKEFLEKLAKLI 173 (180)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999865543
No 11
>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A
Probab=98.79 E-value=1.4e-08 Score=79.38 Aligned_cols=72 Identities=8% Similarity=0.081 Sum_probs=62.0
Q ss_pred CeeEeeCCCchhHHhhhcCceEeecCCCCCCCCCCCcccCCCCccceecccceeecc------chhhhhccCCCCCCChh
Q psy14372 45 PEIRIPWGCGIVGYVAESGEPVNIPDAYLVSTPQIRIPWGCGIVCYLAESGEPVNIP------DAYLLINKFDDLAFSKN 118 (210)
Q Consensus 45 ~~i~ipi~~gIaG~Va~tg~~lnI~D~~~~~~~D~rF~~~~d~tGy~t~s~l~vPI~------~V~qliNK~~g~~Ft~~ 118 (210)
..+++|++.|++|+|+.+|+|++|+|++. |+ ..+|++|+||. ||+.+.|+....+|++.
T Consensus 52 ~~~~~~~~~g~~g~v~~~g~~v~v~d~~~----d~-----------~~~s~l~vPL~~~~~~~GvL~l~~~~~~~~f~~~ 116 (149)
T 2vjw_A 52 EASAIPVQDNAIGQAFRDRAPRRLDVLDG----PG-----------LGGPALVLPLRATDTVAGVLVAVQGSGARPFTAE 116 (149)
T ss_dssp TTCEEESSSSHHHHHHHHCCCEEESCCCT----TS-----------CEEEEEEEEEEETTEEEEEEEEEEETTCCCCCHH
T ss_pred cCcccCCCCCHHHHHhhcCceEEecCccc----CC-----------CCCeEEEEEEccCCeEEEEEEEeeCCCCCCCCHH
Confidence 45789999999999999999999999997 66 25799999996 68889988666789999
Q ss_pred hHHHHHHHHHHHH
Q psy14372 119 DENFVEAYEKAVI 131 (210)
Q Consensus 119 De~~le~ye~~~~ 131 (210)
|..+++.+.....
T Consensus 117 d~~ll~~lA~~aa 129 (149)
T 2vjw_A 117 QLEMMTGFADQAA 129 (149)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999765543
No 12
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=98.76 E-value=2.7e-09 Score=93.95 Aligned_cols=78 Identities=29% Similarity=0.363 Sum_probs=67.2
Q ss_pred CCeeEeeCCCchhHHhhhcCceEeecCCCCCCCCC---CCcccCCC-Cccceecccceeecc-------chhhhhcc---
Q psy14372 44 TPEIRIPWGCGIVGYVAESGEPVNIPDAYLVSTPQ---IRIPWGCG-IVCYLAESGEPVNIP-------DAYLLINK--- 109 (210)
Q Consensus 44 ~~~i~ipi~~gIaG~Va~tg~~lnI~D~~~~~~~D---~rF~~~~d-~tGy~t~s~l~vPI~-------~V~qliNK--- 109 (210)
...+++|.+.|++|+|+.+|++++|+|++. | +||....+ ..||.+++++|+||. ||+++.|+
T Consensus 71 ~~~~~~~~~~g~~g~v~~~~~~v~i~d~~~----~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~g~~iGvl~l~~~~~~ 146 (398)
T 1ykd_A 71 SLEIRIPADKGIAGEVATFKQVVNIPFDFY----HDPRSIFAQKQEKITGYRTYTMLALPLLSEQGRLVAVVQLLNKLKP 146 (398)
T ss_dssp CCCCEEETTSHHHHHHHHHCCCEEECSCGG----GSGGGHHHHHHHHHHCCCCSCEEEEEEECSSCCEEEEEEEEEEBCS
T ss_pred cceeecCCCCchhhhhhccCcEEeccchhc----ccchhhcccccCcccCcCCceEEEEEEECCCCCEEEEEEEeccCCc
Confidence 346789999999999999999999999998 6 78876665 568999999999996 48889998
Q ss_pred -----------CCCCCCChhhHHHHHH
Q psy14372 110 -----------FDDLAFSKNDENFVEA 125 (210)
Q Consensus 110 -----------~~g~~Ft~~De~~le~ 125 (210)
..+..|++.|+.+++.
T Consensus 147 ~~~~~~~l~~~~~~~~f~~~d~~~l~~ 173 (398)
T 1ykd_A 147 YSPPDALLAERIDNQGFTSADEQLFQE 173 (398)
T ss_dssp CCCTTCCHHHHBCTTCCCHHHHHHGGG
T ss_pred ccccccccccccccCCCCHHHHHHHHH
Confidence 4567899999998887
No 13
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=98.72 E-value=8.8e-09 Score=90.70 Aligned_cols=86 Identities=33% Similarity=0.414 Sum_probs=72.6
Q ss_pred CCeeEeeCCCchhHHhhhcCceEeec-CCCCCCCCCCCcccC--CC-Cccceecccceeecc-------chhhhhccCC-
Q psy14372 44 TPEIRIPWGCGIVGYVAESGEPVNIP-DAYLVSTPQIRIPWG--CG-IVCYLAESGEPVNIP-------DAYLLINKFD- 111 (210)
Q Consensus 44 ~~~i~ipi~~gIaG~Va~tg~~lnI~-D~~~~~~~D~rF~~~--~d-~tGy~t~s~l~vPI~-------~V~qliNK~~- 111 (210)
...+++|++.|++|+|+.+|++++|+ |++. |++|... .+ ..||.++|++|+||. ||+.+.|+.+
T Consensus 258 ~~~~~~~~~~~~~~~v~~~~~~~~i~~d~~~----~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~iGvl~l~~~~~~ 333 (398)
T 1ykd_A 258 TKELRVPIGKGFAGIVAASGQKLNIPFDLYD----HPDSATAKQIDQQNGYRTCSLLCMPVFNGDQELIGVTQLVNKKKT 333 (398)
T ss_dssp EEEEEEETTSHHHHHHHHHCCCEEECSCGGG----STTCHHHHHHHHHHTCCCCCEEEEEEECSSSCEEEEEEEEEECCS
T ss_pred eeeeeccCCCchhhHHhccCCeEEecccccc----CcccCcccchhhhcCCeeeeEEEEeeecCCCCEEEEEEEEecCCc
Confidence 35678999999999999999999999 9998 9999765 43 468999999999996 4888999874
Q ss_pred ------------------CCCCChhhHHHHHHHHHHHHHH
Q psy14372 112 ------------------DLAFSKNDENFVEAYEKAVIAM 133 (210)
Q Consensus 112 ------------------g~~Ft~~De~~le~ye~~~~~~ 133 (210)
...|++.|..+++.+.......
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~f~~~d~~ll~~la~~~a~a 373 (398)
T 1ykd_A 334 GEFPPYNPETWPIAPECFQASFDRNDEEFMEAFNIQAGVA 373 (398)
T ss_dssp SCCCCCCGGGTTCCCGGGCCCCCHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 5689999999999966554443
No 14
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=98.72 E-value=2.2e-08 Score=86.75 Aligned_cols=87 Identities=32% Similarity=0.355 Sum_probs=73.6
Q ss_pred CCeeEeeCCCchhHHhhhcCceEeecCCCCCCCCCCCcccCCC-Cccceecccceeecc-------chhhhhccCCCCCC
Q psy14372 44 TPEIRIPWGCGIVGYVAESGEPVNIPDAYLVSTPQIRIPWGCG-IVCYLAESGEPVNIP-------DAYLLINKFDDLAF 115 (210)
Q Consensus 44 ~~~i~ipi~~gIaG~Va~tg~~lnI~D~~~~~~~D~rF~~~~d-~tGy~t~s~l~vPI~-------~V~qliNK~~g~~F 115 (210)
....++|.+.|++|+|+.+|+++.|+|++. |++|....+ ..|+.+++.+|+||. ||+.+.++..+.+|
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~i~d~~~----~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~iGvl~l~~~~~~~~f 316 (368)
T 1mc0_A 241 SYEIRIPADQGIAGHVATTGQILNIPDAYA----HPLFYRGVDDSTGFRTRNILCFPIKNENQEVIGVAELVNKINGPWF 316 (368)
T ss_dssp TTCCEECTTSHHHHHHHHHCCCEEESCSTT----CTTCCCTTHHHHTCCCCCEEEEEEECTTSCEEEEEEEEEETTSSSC
T ss_pred ccceeecCCCceeeeehhhCCEEEecCccc----CcccchhhhhccCCccceEEEEeeECCCCcEEEEEEEEECCCCCCC
Confidence 346789999999999999999999999998 999987665 578889999999996 47788888777789
Q ss_pred ChhhHHHHHHHHHHHHHHH
Q psy14372 116 SKNDENFVEAYEKAVIAMA 134 (210)
Q Consensus 116 t~~De~~le~ye~~~~~~a 134 (210)
+..|..+++.+........
T Consensus 317 ~~~d~~ll~~la~~~a~ai 335 (368)
T 1mc0_A 317 SKFDEDLATAFSIYCGISI 335 (368)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 9999999999666554433
No 15
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=98.71 E-value=1.5e-09 Score=106.90 Aligned_cols=81 Identities=37% Similarity=0.447 Sum_probs=0.0
Q ss_pred CCeeEeeCCCchhHHhhhcCceEeecCCCCCCCCCCCcccCCC-Cccceecccceeecc-------chhhhhccCCCC--
Q psy14372 44 TPEIRIPWGCGIVGYVAESGEPVNIPDAYLVSTPQIRIPWGCG-IVCYLAESGEPVNIP-------DAYLLINKFDDL-- 113 (210)
Q Consensus 44 ~~~i~ipi~~gIaG~Va~tg~~lnI~D~~~~~~~D~rF~~~~d-~tGy~t~s~l~vPI~-------~V~qliNK~~g~-- 113 (210)
...+++|++.||+|+|+.+|++++|+|++. |+||....+ .+||.+++++|+||. ||+.+.|+..+.
T Consensus 221 ~~~~~~p~~~gi~g~v~~~g~pv~I~D~~~----dp~f~~~~~~~~~~~~~S~L~vPL~~~~g~viGvL~l~~~~~~~~~ 296 (878)
T 3bjc_A 221 NNCIRLEWNKGIVGHVAALGEPLNIKDAYE----DPRFNAEVDQITGYKTQSILCMPIKNHREEVVGVAQAINKKSGNGG 296 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcceeeeCCccHHHHHHhcCceEEeCCccc----CcccccccccccCCccceEEEEeeEcCCCCEEEEEEEEecCCCCCC
Confidence 467789999999999999999999999999 999988776 589999999999996 588899998763
Q ss_pred CCChhhHHHHHHHHH
Q psy14372 114 AFSKNDENFVEAYEK 128 (210)
Q Consensus 114 ~Ft~~De~~le~ye~ 128 (210)
.|++.|+++++.+..
T Consensus 297 ~ft~~D~~lL~~lA~ 311 (878)
T 3bjc_A 297 TFTEKDEKDFAAYLA 311 (878)
T ss_dssp ---------------
T ss_pred CCCHHHHHHHHHHHH
Confidence 899999999998433
No 16
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens}
Probab=98.64 E-value=8.4e-08 Score=72.93 Aligned_cols=86 Identities=10% Similarity=0.047 Sum_probs=69.3
Q ss_pred CeeEeeC--CCchhHHhhhcCceEeecCCCCCCCCCCCcccC---CC-Cccceecccceeecc------chhhhhccCCC
Q psy14372 45 PEIRIPW--GCGIVGYVAESGEPVNIPDAYLVSTPQIRIPWG---CG-IVCYLAESGEPVNIP------DAYLLINKFDD 112 (210)
Q Consensus 45 ~~i~ipi--~~gIaG~Va~tg~~lnI~D~~~~~~~D~rF~~~---~d-~tGy~t~s~l~vPI~------~V~qliNK~~g 112 (210)
..+.+|+ +.|++|+|+.+|+++.|+|+.. ++++... .+ ..++..++.+++||. ||+.+.++..+
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~~----~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~iGvl~~~~~~~~ 138 (169)
T 3oov_A 63 AGVVLPLDQRGGVITKCFTDRQVYMIDDVSA----YPTDFRLQSPYDAIRALRSKSFVICPIVVKGEAIGVFAVDNRSSR 138 (169)
T ss_dssp TTCEEESSGGGHHHHHHHHHTCCEEESCGGG----SCGGGSCCTTGGGCGGGCCSSEEEEEEEETTEEEEEEEEECTTSS
T ss_pred hcccCCcccccchHHHHHhcCCCEEeccccc----hhhhhhccccHHHHHhcCcCcEEEEEEEeCCcEEEEEEEEccccC
Confidence 4667888 5899999999999999999998 8876422 12 456778999999996 68888888777
Q ss_pred CCCChhhHHHHHHHHHHHHHHH
Q psy14372 113 LAFSKNDENFVEAYEKAVIAMA 134 (210)
Q Consensus 113 ~~Ft~~De~~le~ye~~~~~~a 134 (210)
.+|++.|.++++.+........
T Consensus 139 ~~f~~~d~~~l~~~a~~~a~ai 160 (169)
T 3oov_A 139 RSLNDTDVDTIKLFADQASSAI 160 (169)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHH
Confidence 7899999999999776655443
No 17
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii}
Probab=98.58 E-value=1.2e-07 Score=72.14 Aligned_cols=82 Identities=21% Similarity=0.259 Sum_probs=67.0
Q ss_pred eeEeeCCCchhHHhhhcCceEeecCCCCCCCCCCCcccCCCCccceecccceeecc------chhhhhccCCCCCCChhh
Q psy14372 46 EIRIPWGCGIVGYVAESGEPVNIPDAYLVSTPQIRIPWGCGIVCYLAESGEPVNIP------DAYLLINKFDDLAFSKND 119 (210)
Q Consensus 46 ~i~ipi~~gIaG~Va~tg~~lnI~D~~~~~~~D~rF~~~~d~tGy~t~s~l~vPI~------~V~qliNK~~g~~Ft~~D 119 (210)
..++|.+.|++|+|+.+|+++.++|+.. |++|.......+...++.+++||. ||+.+.++. +..|++.|
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~~~~~~-~~~f~~~d 144 (171)
T 3trc_A 70 KLRLKFGEGLIGLVGEREEPINLADAPL----HPAYKHRPELGEEDYHGFLGIPIIEQGELLGILVIQQLE-SHHFAEEE 144 (171)
T ss_dssp TCEEETTCHHHHHHHHHTSCEEESCGGG----STTCCCCGGGCCCCCCEEEEEEEEETTEEEEEEEEEESS-SCCCCHHH
T ss_pred cEeecCCCChhhHHHhcCCeEEeCCCCC----CCcccccccCCcccccEEEEEeEEECCEEEEEEEEeecC-CCCCCHHH
Confidence 3489999999999999999999999998 899865433345667899999995 688888875 45899999
Q ss_pred HHHHHHHHHHHHH
Q psy14372 120 ENFVEAYEKAVIA 132 (210)
Q Consensus 120 e~~le~ye~~~~~ 132 (210)
..+++.+......
T Consensus 145 ~~~l~~la~~~a~ 157 (171)
T 3trc_A 145 EAFCVTLAIHLAA 157 (171)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999997665444
No 18
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A*
Probab=98.56 E-value=1.5e-07 Score=70.21 Aligned_cols=82 Identities=21% Similarity=0.207 Sum_probs=67.1
Q ss_pred EeeCCCchhHHhhhcCceEeecCCCCCCCCCCCcccCCCCccceecccceeecc------chhhhhccCCCCCCChhhHH
Q psy14372 48 RIPWGCGIVGYVAESGEPVNIPDAYLVSTPQIRIPWGCGIVCYLAESGEPVNIP------DAYLLINKFDDLAFSKNDEN 121 (210)
Q Consensus 48 ~ipi~~gIaG~Va~tg~~lnI~D~~~~~~~D~rF~~~~d~tGy~t~s~l~vPI~------~V~qliNK~~g~~Ft~~De~ 121 (210)
.+|.+.|++|+|+.+|+++.++|+.. |++|..... .....++.+++||. ||+.+.++..+..|++.|..
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~~~-~~~~~~s~l~vPl~~~~~~~Gvl~l~~~~~~~~f~~~~~~ 130 (153)
T 2w3g_A 56 HLPKGLGVIGLLIEDPKPLRLDDVSA----HPASIGFPP-YHPPMRTFLGVPVRVRDESFGTLYLTDKTNGQPFSDDDEV 130 (153)
T ss_dssp SCCCSCTHHHHHHHSCSCEEESSGGG----STTCCCCCT-TCCCCCCEEEEEEEETTEEEEEEEEEEETTSCCCCHHHHH
T ss_pred cCCCCCCHHHHHHhcCCcEEecCccc----CchhcCCCC-cCCCCCeEEEeeEEECCEEEEEEEEeeCCCCCCCCHHHHH
Confidence 57788999999999999999999998 888864433 33457899999995 68888888876799999999
Q ss_pred HHHHHHHHHHHHH
Q psy14372 122 FVEAYEKAVIAMA 134 (210)
Q Consensus 122 ~le~ye~~~~~~a 134 (210)
+++.+........
T Consensus 131 ~l~~la~~~a~ai 143 (153)
T 2w3g_A 131 LVQALAAAAGIAV 143 (153)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999766554433
No 19
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens}
Probab=98.55 E-value=1.5e-07 Score=72.09 Aligned_cols=83 Identities=22% Similarity=0.192 Sum_probs=63.2
Q ss_pred CeeEeeCCCchhHHhhhcCceEeecCCCCCCCCCCCcccCCCCccceecccceeecc------chhhhhccCCCCCCChh
Q psy14372 45 PEIRIPWGCGIVGYVAESGEPVNIPDAYLVSTPQIRIPWGCGIVCYLAESGEPVNIP------DAYLLINKFDDLAFSKN 118 (210)
Q Consensus 45 ~~i~ipi~~gIaG~Va~tg~~lnI~D~~~~~~~D~rF~~~~d~tGy~t~s~l~vPI~------~V~qliNK~~g~~Ft~~ 118 (210)
....+|++.|++|+|+.+|+++.++|+.. |++|.......+...++.+|+||. ||+.+.++. +..|+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~i~d~~~----~~~~~~~~~~~~~~~~s~l~vPl~~~~~~iGvl~~~~~~-~~~f~~~ 148 (181)
T 3e0y_A 74 GKIRIKIGDGITGSVARDGQYISLSRASQ----DPRYRYFPELQEEKYNSMLSFPIGDKKEVYGVINLNTTS-IRSFHED 148 (181)
T ss_dssp TTCEEETTTSSHHHHHHHCCCEEEEEECC----CCCC---------CEEEEEEEEEECSSCEEEEEEEEESS-CCCCCHH
T ss_pred ccccccCCCCeeeehhhcCCeEEecCccc----CccccccccccccCcceEEEEEEEeCCeEEEEEEEeeCC-CCCCCHH
Confidence 34578999999999999999999999998 898864333445667999999996 688888775 5589999
Q ss_pred hHHHHHHHHHHHHH
Q psy14372 119 DENFVEAYEKAVIA 132 (210)
Q Consensus 119 De~~le~ye~~~~~ 132 (210)
|..+++.+......
T Consensus 149 ~~~~l~~la~~~a~ 162 (181)
T 3e0y_A 149 EIYFVSIIANLILT 162 (181)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999997665544
No 20
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=98.51 E-value=3.3e-08 Score=94.64 Aligned_cols=76 Identities=17% Similarity=0.204 Sum_probs=65.3
Q ss_pred eeEeeCCCchhHHhhhcCceEeecCCCCCCCCCCCcccCCCCccceecccceeecc--------chhhhhccCCCCCCCh
Q psy14372 46 EIRIPWGCGIVGYVAESGEPVNIPDAYLVSTPQIRIPWGCGIVCYLAESGEPVNIP--------DAYLLINKFDDLAFSK 117 (210)
Q Consensus 46 ~i~ipi~~gIaG~Va~tg~~lnI~D~~~~~~~D~rF~~~~d~tGy~t~s~l~vPI~--------~V~qliNK~~g~~Ft~ 117 (210)
++++|++ ||+|+|+.+|+|++|+|++. |++|... ...||.++|.+|+||. ||+.+.|+..+..|++
T Consensus 74 ~~~~p~~-Gi~g~v~~~~~pv~i~d~~~----~~~~~~~-~~~~~~~~S~L~vPI~~~~~g~viGvL~l~~~~~~~~ft~ 147 (691)
T 3ibj_A 74 EVSFPLT-GCLGQVVEDKKSIQLKDLTS----EDVQQLQ-SMLGCELQAMLCVPVISRATDQVVALACAFNKLEGDLFTD 147 (691)
T ss_dssp EEEEECC-SSSHHHHHHCCCEEGGGSCH----HHHHHHH-HHHTSCCSCEEEEEEECSSSCSEEEEEEEESBSSSCCCCT
T ss_pred ceecCCc-cHHHHHHHHCCeEEeccchh----ccccccc-cccCCccceEEEEEeEcCCCCcEEEEEEEEcCCCCCCCCH
Confidence 6889999 99999999999999999998 7876321 2578889999999996 4778899988889999
Q ss_pred hhHHHHHHHH
Q psy14372 118 NDENFVEAYE 127 (210)
Q Consensus 118 ~De~~le~ye 127 (210)
.|+++++.+.
T Consensus 148 ~d~~lL~~la 157 (691)
T 3ibj_A 148 EDEHVIQHCF 157 (691)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999843
No 21
>3cit_A Sensor histidine kinase; MEGA: 3.30.450.40, structural genomics, sensor histidine KIN pseudomonas syringae, PSI-2; HET: MSE; 1.90A {Pseudomonas syringae PV}
Probab=98.50 E-value=1.3e-07 Score=76.40 Aligned_cols=59 Identities=10% Similarity=-0.106 Sum_probs=49.1
Q ss_pred ecCCCCCCCCC-CCcccCCCCccceecccceeecc-------chhhhhccCCCCCCChhhHHHHHHHHHHHHHH
Q psy14372 68 IPDAYLVSTPQ-IRIPWGCGIVCYLAESGEPVNIP-------DAYLLINKFDDLAFSKNDENFVEAYEKAVIAM 133 (210)
Q Consensus 68 I~D~~~~~~~D-~rF~~~~d~tGy~t~s~l~vPI~-------~V~qliNK~~g~~Ft~~De~~le~ye~~~~~~ 133 (210)
++|.+. + |||+. .+||+|+|++|||+. ||+|++||.++..|+++|.+.++.......+.
T Consensus 78 ~~~~~~----~gpr~~~---~tg~~t~svl~vPL~~~~g~~~Gvlql~N~~~~~~f~~eD~e~l~lLA~~~a~a 144 (160)
T 3cit_A 78 TADPLA----IGPQWLE---RPGTHLPCVLLLPLRGADEGSFGTLVLANSVAISAPDGEDIESLQLLATLLAAH 144 (160)
T ss_dssp CCCTTC----CSCEEEE---CTTSSSCEEEEEEEECSSSSEEEEEEEEESSCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred cccccc----ccccccc---ccCcccceeEEEeeecCCCcEEEEEEEeccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 666665 5 89884 789999999999994 69999999999889999999999965554443
No 22
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=98.47 E-value=6.4e-08 Score=83.82 Aligned_cols=76 Identities=17% Similarity=0.168 Sum_probs=64.3
Q ss_pred CeeEeeCCCchhHHhhhcCceEeecCCCCCCCCCCCcccCCC-Cccceecccceeecc--------chhhhhccCCCCCC
Q psy14372 45 PEIRIPWGCGIVGYVAESGEPVNIPDAYLVSTPQIRIPWGCG-IVCYLAESGEPVNIP--------DAYLLINKFDDLAF 115 (210)
Q Consensus 45 ~~i~ipi~~gIaG~Va~tg~~lnI~D~~~~~~~D~rF~~~~d-~tGy~t~s~l~vPI~--------~V~qliNK~~g~~F 115 (210)
.++++|++.|++|+|+.+|+++.|+|++. |+|. ..+ ..|+.+++.+|+||. ||+.+.++..+..|
T Consensus 72 ~~~~~~~~~g~~g~~~~~~~~~~i~d~~~----~~~~--~~~~~~~~~~~s~l~vPl~~~~~~~~~Gvl~l~~~~~~~~f 145 (368)
T 1mc0_A 72 EEVSFPLTMGRLGQVVEDKQCIQLKDLTS----DDVQ--QLQNMLGCELQAMLCVPVISRATDQVVALACAFNKLGGDFF 145 (368)
T ss_dssp EEEEEESSSSSHHHHHHHCCCEEGGGSCH----HHHH--HHHHHHCSCCCCEEEEEEECTTTCSEEEEEEEEEESSCSSC
T ss_pred cceeeccccCHHHHHHhcCCeEEeccccc----cccc--ccccccCcccceEEEEEeecCCCCcEEEEEEeecCCCCCCC
Confidence 46789999999999999999999999998 7872 223 568889999999995 36777888887789
Q ss_pred ChhhHHHHHHH
Q psy14372 116 SKNDENFVEAY 126 (210)
Q Consensus 116 t~~De~~le~y 126 (210)
+..|+.+++.+
T Consensus 146 ~~~d~~~l~~l 156 (368)
T 1mc0_A 146 TDEDEHVIQHC 156 (368)
T ss_dssp CSHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 99999999874
No 23
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP}
Probab=98.32 E-value=1.2e-06 Score=65.69 Aligned_cols=84 Identities=20% Similarity=0.210 Sum_probs=62.5
Q ss_pred eeEeeCCCchhHHhhhcCceEeecCCCCCCCCCCCcccCCCCccceecccceeecc------chhhhhccCCCCCCChhh
Q psy14372 46 EIRIPWGCGIVGYVAESGEPVNIPDAYLVSTPQIRIPWGCGIVCYLAESGEPVNIP------DAYLLINKFDDLAFSKND 119 (210)
Q Consensus 46 ~i~ipi~~gIaG~Va~tg~~lnI~D~~~~~~~D~rF~~~~d~tGy~t~s~l~vPI~------~V~qliNK~~g~~Ft~~D 119 (210)
...+|++.|++|+|+.+|+++.++|+.. +++|...........++.+++||. ||+.+.++ .+..|+..|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~l~~~-~~~~f~~~~ 146 (171)
T 3ci6_A 72 HVSLQLSEGLVGLVGQREEIVNLENASK----HERFAYLPETGEEIYNSFLGVPVMYRRKVMGVLVVQNK-QPQDFSEAA 146 (171)
T ss_dssp TCEEETTSHHHHHHHHHTSCEEESSGGG----STTC---------CCCEEEEEEEEETTEEEEEEEEEES-SCCCCCHHH
T ss_pred ceeeeccCCeehhhhccCceEEecCCCc----CcchhccccccccccceEEEEeEEECCEEEEEEEEecC-CCCCCCHHH
Confidence 4578999999999999999999999998 888764332222335899999995 67778877 446899999
Q ss_pred HHHHHHHHHHHHHHH
Q psy14372 120 ENFVEAYEKAVIAMA 134 (210)
Q Consensus 120 e~~le~ye~~~~~~a 134 (210)
..+++.+........
T Consensus 147 ~~~l~~la~~~a~al 161 (171)
T 3ci6_A 147 ESFLVTLCAQLSGVI 161 (171)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999766554433
No 24
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls}
Probab=98.30 E-value=1.2e-06 Score=67.41 Aligned_cols=86 Identities=2% Similarity=-0.143 Sum_probs=64.9
Q ss_pred CCeeEeeCCCchhHHhhhcCceEeecCCCCCCCCCCCcccC-C---C-Cccceecccceeecc------chhhhhccCCC
Q psy14372 44 TPEIRIPWGCGIVGYVAESGEPVNIPDAYLVSTPQIRIPWG-C---G-IVCYLAESGEPVNIP------DAYLLINKFDD 112 (210)
Q Consensus 44 ~~~i~ipi~~gIaG~Va~tg~~lnI~D~~~~~~~D~rF~~~-~---d-~tGy~t~s~l~vPI~------~V~qliNK~~g 112 (210)
.....+|++.|++|+|+.+|+++.+ |.... +++|... . + ..+...+|++++||. ||+.+.++..+
T Consensus 68 ~~~~~~~~~~~~~~~v~~~~~~~~~-d~~~~---~~~~~~~~~~~~~~~~~~~~~s~l~vPL~~~~~~iGvL~l~~~~~~ 143 (177)
T 3k2n_A 68 LRHQTRSIAGTWLEGHLDDRTVTVA-SIARD---IPSFGADGAPLLWTLHELGMRQIVLSPLRSGGRVIGFLSFVSAEEK 143 (177)
T ss_dssp TCCSEEECTTSGGGGGTTCCSCEEE-ETTTT---CTTTTTTTCHHHHHHHHHTCCEEEEEEEEETTEEEEEEEEEESSCC
T ss_pred hhcccCCccccHHHHHhccCCceEe-chhhc---ccccCCcchhHHHHHHHcCceEEEEEEEEECCEEEEEEEEEECCCC
Confidence 3456789999999999999999999 66652 5666543 0 1 234457899999996 68888887766
Q ss_pred CCCChhhHHHHHHHHHHHHHHH
Q psy14372 113 LAFSKNDENFVEAYEKAVIAMA 134 (210)
Q Consensus 113 ~~Ft~~De~~le~ye~~~~~~a 134 (210)
.|++.|..+++.+........
T Consensus 144 -~f~~~d~~ll~~lA~~~a~Ai 164 (177)
T 3k2n_A 144 -LWSDGDKSLLSGVSSSIAIAV 164 (177)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHHHHHH
Confidence 899999999999766554443
No 25
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans}
Probab=98.00 E-value=2.9e-06 Score=67.47 Aligned_cols=78 Identities=13% Similarity=-0.034 Sum_probs=58.3
Q ss_pred eeEeeCCCchhHHhhhcCceEeecCCCCCCCCCCCcccCCCCccceecccceeecc------chhhhhccCCCCCCChhh
Q psy14372 46 EIRIPWGCGIVGYVAESGEPVNIPDAYLVSTPQIRIPWGCGIVCYLAESGEPVNIP------DAYLLINKFDDLAFSKND 119 (210)
Q Consensus 46 ~i~ipi~~gIaG~Va~tg~~lnI~D~~~~~~~D~rF~~~~d~tGy~t~s~l~vPI~------~V~qliNK~~g~~Ft~~D 119 (210)
...+|.+.+++|+|+.+|+++.+++... +.+|....-......+|.+|+||. ||+.+-|+. ...|++.|
T Consensus 52 ~~~ip~~~s~~~~v~~~~~~~v~~~~~~----~~~~~~~~~~~~~~~~S~l~vPL~~~~~~iGvl~l~~~~-~~~f~~~d 126 (165)
T 3o5y_A 52 GSTIPKEQSLYWSALDQRQTIFRSLTDT----QDNFYEKQYLAILDLKSILVIPIYSKNKRVGVLSIGRKQ-QIDWSLDD 126 (165)
T ss_dssp TCEECSTTCHHHHHHHHTSCEEEESCCT----TCCCTTHHHHHTTTCCEEEEEEEECSSCEEEEEEEEESS-CCCCCHHH
T ss_pred ccccCCccCHHHHHHHhCCeEEEcCccc----ccccccchHHHhhCCCEEEEeCeeECCEEEEEEEEEeCC-CCCCCHHH
Confidence 3478888999999999999998755443 446643211334457999999995 688787775 45899999
Q ss_pred HHHHHHHHH
Q psy14372 120 ENFVEAYEK 128 (210)
Q Consensus 120 e~~le~ye~ 128 (210)
..+++....
T Consensus 127 ~~~l~~la~ 135 (165)
T 3o5y_A 127 LAFLEQLTD 135 (165)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998443
No 26
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti}
Probab=97.97 E-value=3.3e-06 Score=63.67 Aligned_cols=77 Identities=9% Similarity=-0.115 Sum_probs=56.2
Q ss_pred eCCCchhHHhhhcCceEeecCCCCCCCCCCCcccCCC-Cccceecccceeecc------chhhhhccCCCCCCChhhHHH
Q psy14372 50 PWGCGIVGYVAESGEPVNIPDAYLVSTPQIRIPWGCG-IVCYLAESGEPVNIP------DAYLLINKFDDLAFSKNDENF 122 (210)
Q Consensus 50 pi~~gIaG~Va~tg~~lnI~D~~~~~~~D~rF~~~~d-~tGy~t~s~l~vPI~------~V~qliNK~~g~~Ft~~De~~ 122 (210)
+.+.|++|+|+.+|+|+.|+|+.. |+||....+ ....-.++++++||. ||+.+.++..+ .|++.|..+
T Consensus 51 ~~~~~~~~~~~~~~~~~~i~d~~~----~~~~~~~~~~~~~~g~~s~~~vPl~~~~~~iGvl~~~~~~~~-~f~~~~~~l 125 (151)
T 3hcy_A 51 VDGHSPWITGANEPEPIFVENVDD----AEFSRELKESIVGEGIAALGFFPLVTEGRLIGKFMTYYDRPH-RFADSEIGM 125 (151)
T ss_dssp TCBCCSCC---CCCCCEEESCGGG----SCCCHHHHHHHHHHTCCEEEEEEEESSSSEEEEEEEEESSCC-CCCHHHHHH
T ss_pred ccCCCchhhhhhcCCcEEEeChhh----CcccchhHHHHHhcCchheEEeceEECCEEEEEEEEecCCCC-CCCHHHHHH
Confidence 456789999999999999999998 898853322 223345799999996 57777776544 699999999
Q ss_pred HHHHHHHHH
Q psy14372 123 VEAYEKAVI 131 (210)
Q Consensus 123 le~ye~~~~ 131 (210)
++.+.....
T Consensus 126 l~~~a~~~a 134 (151)
T 3hcy_A 126 ALTIARQLG 134 (151)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999665443
No 27
>2k2n_A Sensor protein, SYB-CPH1(GAF); phytochrome, GAF domain, phycocyanobilin, PCB, bacteriophytochrome, cyanobacterial phytochrome, kinase; HET: CYC; NMR {Synechococcus SP} SCOP: d.110.2.1 PDB: 2kli_A* 2koi_A*
Probab=97.94 E-value=1.9e-06 Score=67.36 Aligned_cols=78 Identities=9% Similarity=-0.009 Sum_probs=62.1
Q ss_pred CCchhHHh----hhcCceEeecCCCCCCCCCCCcccCCC-Cccceecccceeecc------chhhhhccCCCCCCChhhH
Q psy14372 52 GCGIVGYV----AESGEPVNIPDAYLVSTPQIRIPWGCG-IVCYLAESGEPVNIP------DAYLLINKFDDLAFSKNDE 120 (210)
Q Consensus 52 ~~gIaG~V----a~tg~~lnI~D~~~~~~~D~rF~~~~d-~tGy~t~s~l~vPI~------~V~qliNK~~g~~Ft~~De 120 (210)
+.|++|+| +.+|+++.++|++. +++|+...+ ..++.++|++|+||. |++.+.|+ ....|++.|.
T Consensus 77 ~~~~~g~v~~~~~~~~~~~~i~d~~~----~~~~~~~~~~~~~~~~~s~l~vPi~~~~~l~G~l~~~~~-~~~~~~~~e~ 151 (172)
T 2k2n_A 77 EAQSRSISQPESWGLSARVPLGEPLQ----RPVDPCHVHYLKSMGVASSLVVPLMHHQELWGLLVSHHA-EPRPYSQEEL 151 (172)
T ss_dssp GGCCCCCSCCCSCCCSSCCCCCSSSS----CCCCHHHHHHHHTTTCSEEEECCCSCSSCCCEEEEEEEC-SCCCCCHHHH
T ss_pred cccccccccccccccCCceeccchhh----cCCCHHHHHHHHhcCCeEEEEEEEEECCEEEEEEEEEeC-CCCCCCHHHH
Confidence 36788876 99999999999998 888864443 456788999999996 68888887 5568999999
Q ss_pred HHHHHHHHHHHHHH
Q psy14372 121 NFVEAYEKAVIAMA 134 (210)
Q Consensus 121 ~~le~ye~~~~~~a 134 (210)
++++.+........
T Consensus 152 ~~l~~la~~~a~ai 165 (172)
T 2k2n_A 152 QVVQLLADQVSIAI 165 (172)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999766654433
No 28
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP}
Probab=97.89 E-value=3.8e-06 Score=66.06 Aligned_cols=77 Identities=6% Similarity=-0.014 Sum_probs=59.9
Q ss_pred eeCCCchhHHhhhcCceEeecCCCCCCCCCCCcccCCCCccceecccceeecc------chhhhhccCCCCCCChhhHHH
Q psy14372 49 IPWGCGIVGYVAESGEPVNIPDAYLVSTPQIRIPWGCGIVCYLAESGEPVNIP------DAYLLINKFDDLAFSKNDENF 122 (210)
Q Consensus 49 ipi~~gIaG~Va~tg~~lnI~D~~~~~~~D~rF~~~~d~tGy~t~s~l~vPI~------~V~qliNK~~g~~Ft~~De~~ 122 (210)
+| +.|++|+|+.+|+++.|+|+.. |++|.......+..++|.+|+||. ||+.+ +......|++.|..+
T Consensus 92 ~~-~~~~~~~~~~~~~~~~i~d~~~----~~~~~~~~~~~~~~~~s~l~vPL~~~~~~~GvL~l-~~~~~~~f~~~d~~l 165 (184)
T 3p01_A 92 LN-QDPLTNEAIATGQIQVAANIAK----DPKLASISQYQDNGIQSHVVIPITYRNEMLGVLSL-QWQQPISLREDELTL 165 (184)
T ss_dssp GG-GCHHHHHHHHHCSCEEESCGGG----CHHHHTCHHHHHHTCCEEEEEEEEETTEEEEEEEE-EESSCCCCCHHHHHH
T ss_pred cC-CCcHHHHHHhhCCeEEEecccc----CccccchhHHHHhCccEEEEEEEEECCEEEEEEEe-CcCCCCCCCHHHHHH
Confidence 55 4889999999999999999998 888864211233457899999996 57777 555567899999999
Q ss_pred HHHHHHHHH
Q psy14372 123 VEAYEKAVI 131 (210)
Q Consensus 123 le~ye~~~~ 131 (210)
++.+.....
T Consensus 166 l~~lA~q~a 174 (184)
T 3p01_A 166 IHLSAQLVA 174 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998655443
No 29
>2lb5_A Sensor histidine kinase; PCB, transferase, GAF domain, phosphoprotein; HET: CYC; NMR {Synechococcus SP} PDB: 2lb9_A*
Probab=97.74 E-value=5.6e-06 Score=66.35 Aligned_cols=80 Identities=10% Similarity=0.001 Sum_probs=62.1
Q ss_pred CCchhHH----hhhcCceEeecCCCCCCCCCCCcccCCC-Cccceecccceeecc------chhhhhccCCCCCCChhhH
Q psy14372 52 GCGIVGY----VAESGEPVNIPDAYLVSTPQIRIPWGCG-IVCYLAESGEPVNIP------DAYLLINKFDDLAFSKNDE 120 (210)
Q Consensus 52 ~~gIaG~----Va~tg~~lnI~D~~~~~~~D~rF~~~~d-~tGy~t~s~l~vPI~------~V~qliNK~~g~~Ft~~De 120 (210)
+.|++|+ |+.+|+++.++|++. +++++...+ ..++.++|++|+||. |++.+.|+ ....|++.|.
T Consensus 107 ~~~~~~~~~~~~~~~~~~i~i~d~~~----~~~~~~~~~~l~~~~~~S~l~vPi~~~~~l~GvL~~~~~-~~~~~~~~e~ 181 (208)
T 2lb5_A 107 EAQSRSISQPESWGLSARVPLGEPLQ----RPVDPCHVHYLKSMGVASSLVVPLMHHQELWGLLVSHHA-EPRPYSQEEL 181 (208)
T ss_dssp GGCCCCCCCSSCCCCCSCCCCCSCSS----CCCCHHHHHHHHHTTCSEEEEEEEEETTEEEEEEEEEES-CCCCCCHHHH
T ss_pred ccccccccccccccccccccccchhh----ccCCHHHHHHHHhcCCcEEEEEEEEECCEeEEEEEEeeC-CCCCCCHHHH
Confidence 3677777 799999999999998 777654333 356678999999996 68888887 5568999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy14372 121 NFVEAYEKAVIAMAKQ 136 (210)
Q Consensus 121 ~~le~ye~~~~~~ak~ 136 (210)
.+++...........+
T Consensus 182 ~ll~~la~~~a~ai~~ 197 (208)
T 2lb5_A 182 QVVQLLADQVSIAIAQ 197 (208)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999977666554433
No 30
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca}
Probab=97.63 E-value=2.6e-05 Score=60.27 Aligned_cols=80 Identities=11% Similarity=-0.106 Sum_probs=57.4
Q ss_pred EeeCCCchhHHhhhcCceEeecCCCCCCCCCCCcccCCCCccceecccceeecc-------chhhhhccCCCCCCChhhH
Q psy14372 48 RIPWGCGIVGYVAESGEPVNIPDAYLVSTPQIRIPWGCGIVCYLAESGEPVNIP-------DAYLLINKFDDLAFSKNDE 120 (210)
Q Consensus 48 ~ipi~~gIaG~Va~tg~~lnI~D~~~~~~~D~rF~~~~d~tGy~t~s~l~vPI~-------~V~qliNK~~g~~Ft~~De 120 (210)
.+|.+.|++|+|+.+|+++.++|+.. ++++.+.......-.+|.+++||. ||+.+.++.....|++.|.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~v~d~~~----~~~~~~~~~~~~~g~~s~~~vPl~~~~~~~~GvL~l~~~~~~~~f~~~d~ 142 (181)
T 2qyb_A 67 WEPEIETYIGEAFLSNRLQFVNDTQY----MTKPLTRELMQKEGIKSFAHIPISRKGEPPFGILSVFSRTIVGLFNEPFL 142 (181)
T ss_dssp BCCCTTSHHHHHHHHTSCEEESCGGG----CSCHHHHHHHHHTTCCEEEEEEECCTTSCCCEEEEEEESSCSSCCCHHHH
T ss_pred cccCCCCchhhhhhcCCCEEecChhc----CCchhhHHHHHhcCcceEEEEEEEeCCCeEEEEEEEecCCCCCCCCHHHH
Confidence 35556799999999999999999987 776321111111125799999985 4666666455568999999
Q ss_pred HHHHHHHHHHH
Q psy14372 121 NFVEAYEKAVI 131 (210)
Q Consensus 121 ~~le~ye~~~~ 131 (210)
.+++.+.....
T Consensus 143 ~lL~~la~~~a 153 (181)
T 2qyb_A 143 NLLESLAGQLA 153 (181)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998655443
No 31
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A*
Probab=94.25 E-value=0.03 Score=44.11 Aligned_cols=80 Identities=6% Similarity=-0.081 Sum_probs=55.2
Q ss_pred eEeeCCC--chhHHhhhcCceEeecCCCCCCCCCCCcccCCC-Cccceecccceeecc------chhhhhccCCCCCCCh
Q psy14372 47 IRIPWGC--GIVGYVAESGEPVNIPDAYLVSTPQIRIPWGCG-IVCYLAESGEPVNIP------DAYLLINKFDDLAFSK 117 (210)
Q Consensus 47 i~ipi~~--gIaG~Va~tg~~lnI~D~~~~~~~D~rF~~~~d-~tGy~t~s~l~vPI~------~V~qliNK~~g~~Ft~ 117 (210)
..+|... .-+.....+|+++.|+|++. ++.-+...+ ...+-+++.+++||. |++.+-+......|+.
T Consensus 60 ~~~~~~~~~~~~~~~~~~g~~~~I~Dv~~----~~~~~~~~~~l~~~~v~S~L~vPi~~~~~l~GlL~~~~~~~~r~w~~ 135 (171)
T 4glq_A 60 QVIEDPCFREHWVEAYRQGRIQATTDIFK----AGLTECHLNQLRPLKVRANLVVPMVIDDQLFGLLIAHQASEPRQWQE 135 (171)
T ss_dssp CEECCTHHHHHTHHHHHTTCCEEESCGGG----TTCCHHHHHHHGGGTEEEEEEEEEEETTEEEEEEEEEEESSCCCCCH
T ss_pred CccCccccHHHHHHHHHcCCEEEEcCcCc----CCCCHHHHHHHHhcCCcEEEEEEEEECCEEEEEEEEEeCCCCCCCCH
Confidence 4566542 23556889999999999987 433222222 345678999999996 5666655445568999
Q ss_pred hhHHHHHHHHHHH
Q psy14372 118 NDENFVEAYEKAV 130 (210)
Q Consensus 118 ~De~~le~ye~~~ 130 (210)
.|.++++......
T Consensus 136 ~ei~ll~~lA~ql 148 (171)
T 4glq_A 136 IEIDQFSELASTG 148 (171)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999855443
No 32
>1tbf_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5A, hydrolase; HET: VIA; 1.30A {Homo sapiens} SCOP: a.211.1.2 PDB: 1t9s_A* 1xoz_A* 1xp0_A* 2chm_A* 3tge_A* 3tgg_A* 3hc8_A* 3hdz_A* 1t9r_A* 3sie_A* 3shy_A* 3shz_A* 3b2r_A* 2h44_A* 2h42_A* 2h40_A* 1rkp_A* 1udt_A* 1udu_A* 1uho_A* ...
Probab=93.84 E-value=0.0079 Score=53.66 Aligned_cols=51 Identities=22% Similarity=0.268 Sum_probs=32.0
Q ss_pred HHHhhhccCCHHHHHHHHccCCCcCCCccccceeEeeEEEecCCChhHHHHHHH
Q psy14372 141 DVLSYHASASLEDAQRLRSNNSSLIVPMAKQSVTLDVLSYHASASLEDAQRLRR 194 (210)
Q Consensus 141 evLsyH~~~s~~e~~~l~~~~~~~~ip~~~~~~~l~~~~fh~d~~~~e~~~l~~ 194 (210)
.+||||++|+.+|+++|+.+. ...+|++. .+.++.++| ..+++++.+.++.
T Consensus 12 ~~~~yh~~~~~~e~~~l~~~~-~~~lp~~~-~~~l~~w~F-d~~~l~~~~~~~~ 62 (347)
T 1tbf_A 12 SGLVPRGSHMEEETRELQSLA-AAVVPSAQ-TLKITDFSF-SDFELSDLETALC 62 (347)
T ss_dssp ----------CHHHHHHHHHH-HSCCCCHH-HHTTTCTTC-CCTTCCHHHHHHH
T ss_pred cccchhccCCHHHHHHHhhcc-cccCChhh-hcCCCCCCC-CcccCCchhHHHH
Confidence 479999999999999998410 14588875 678999999 7899999887765
No 33
>2our_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; PDE10, substrate specificity, hydrolase; HET: CMP; 1.45A {Homo sapiens} PDB: 2ous_A 2ouu_A* 3sn7_A* 3sni_A* 3snl_A* 4dff_A* 2wey_A* 2oun_A* 2oup_A 2ouq_A* 2ouv_A 2ouy_A* 4ael_A* 2y0j_A* 4ddl_A* 3uuo_A* 3ui7_A* 2o8h_A* 2ovv_A* 2ovy_A* ...
Probab=80.20 E-value=0.17 Score=44.61 Aligned_cols=40 Identities=15% Similarity=0.276 Sum_probs=30.1
Q ss_pred hhhccCCHHHHHHHHccCCCcCCCccccceeEeeEEEecCCChhHH
Q psy14372 144 SYHASASLEDAQRLRSNNSSLIVPMAKQSVTLDVLSYHASASLEDA 189 (210)
Q Consensus 144 syH~~~s~~e~~~l~~~~~~~~ip~~~~~~~l~~~~fh~d~~~~e~ 189 (210)
|||++|+.+|+++|+. ..+|++. ...++.++| ..+.+++.
T Consensus 1 ~yh~~~~~~e~~~l~~----~~~~~~~-~~~~~~w~F-~~~~l~~~ 40 (331)
T 2our_A 1 SHMSICTSEEWQGLMQ----FTLPVRL-CKEIELFHF-DIGPFENM 40 (331)
T ss_dssp -CCCCCCHHHHHHHTT----CCCCHHH-HHHTTSTTC-CCGGGGGG
T ss_pred CCccccCHHHHHHHHh----cCCcHHH-HcCcCcCCC-CcccccHH
Confidence 6999999999999987 5577663 466777777 56666664
No 34
>3itu_A CGMP-dependent 3',5'-cyclic phosphodiesterase; Zn-binding, all-alpha-helical, alternative splicing, hydrolase, membrane, polymorphism; HET: IBM; 1.58A {Homo sapiens} PDB: 3itm_A* 1z1l_A
Probab=57.97 E-value=1.1 Score=39.64 Aligned_cols=43 Identities=14% Similarity=0.114 Sum_probs=31.5
Q ss_pred cCCHHHHHHHHccCCCcCCCcccc-ceeEeeEEEecCCChhHHHHHHHh
Q psy14372 148 SASLEDAQRLRSNNSSLIVPMAKQ-SVTLDVLSYHASASLEDAQRLRRT 195 (210)
Q Consensus 148 ~~s~~e~~~l~~~~~~~~ip~~~~-~~~l~~~~fh~d~~~~e~~~l~~~ 195 (210)
+|+++|+++|+. ..||+... ...+..|+| .+.++++.+.++++
T Consensus 2 ~~~~~e~~~~~~----~~~~~~~~~~~~~~~~~F-~~~~l~~~e~~~~~ 45 (345)
T 3itu_A 2 SAMDDEYTKLLH----DGIQPVAAIDSNFASFTY-TPRSLPEDDTSMAI 45 (345)
T ss_dssp ---CHHHHHHHH----SCCCCGGGTCTTTTSTTC-CGGGSCGGGHHHHH
T ss_pred CCCHHHHHHHHh----cCCCChhhccCCcCeeee-cCCCCCchHHHHHH
Confidence 689999999998 55777542 346889999 88899988888764
No 35
>3eea_A GAF domain/HD domain protein; structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomics; HET: PG6; 1.80A {Geobacter sulfurreducens}
Probab=27.97 E-value=46 Score=26.07 Aligned_cols=69 Identities=9% Similarity=-0.008 Sum_probs=43.3
Q ss_pred hhhcCceEeecCCCCCCCCCCCcccCCCCccceecccceeecc------chhhhhccCCCCCCChhhHHHHHHHHHHHHH
Q psy14372 59 VAESGEPVNIPDAYLVSTPQIRIPWGCGIVCYLAESGEPVNIP------DAYLLINKFDDLAFSKNDENFVEAYEKAVIA 132 (210)
Q Consensus 59 Va~tg~~lnI~D~~~~~~~D~rF~~~~d~tGy~t~s~l~vPI~------~V~qliNK~~g~~Ft~~De~~le~ye~~~~~ 132 (210)
.-+.++-+..+|... ..-|.+.... =...-+++.+|+. ||+-..|+....+|+.++..++.++......
T Consensus 78 ~lr~~~hll~~dp~~----s~l~tp~l~k-~~~~~~ILgVPL~~g~qVIGVLFaArR~~R~~Fs~dEiALL~SLAahAAI 152 (162)
T 3eea_A 78 MLRKRQHLMLTDPGS----SDLLTPKLRK-LLRNLCVLAVPMVVRTQVIGAVFMARTRDNPPFSDAETAIIRDLVSHAAL 152 (162)
T ss_dssp HHHHTCCEEESCGGG----CTTSCHHHHH-HTTTEEEEEEEEEETTEEEEEEEEEEETTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHhcCccccCCCCc----chhccHHHHH-HHhhCeEEEecceeCCEEEEEEEEecccccCCCCHHHHHHHHHHHHHHHH
Confidence 444566666666554 2233221110 0112478999985 6777788877779999999999986554443
No 36
>2o8m_C Protease; NS3, NS4A, viral protein; 2.00A {Hepatitis c virus} PDB: 2obq_B 3lon_B* 1n1l_C* 1rtl_C* 2a4g_B* 1a1r_C* 2a4q_B* 2f9u_B* 2f9v_B* 2fm2_B* 2gvf_B* 2obo_B* 2a4r_B* 2oc1_B* 2oc7_B* 2oc8_B* 2xcf_C* 2xcn_C* 2xni_C* 3eyd_B* ...
Probab=25.53 E-value=8 Score=21.52 Aligned_cols=18 Identities=44% Similarity=0.665 Sum_probs=15.7
Q ss_pred chhHHhhhcCceEeecCC
Q psy14372 54 GIVGYVAESGEPVNIPDA 71 (210)
Q Consensus 54 gIaG~Va~tg~~lnI~D~ 71 (210)
.|.|.+..+|+|..++|-
T Consensus 6 vIvGri~l~gkp~v~Pdr 23 (26)
T 2o8m_C 6 VIVGRIVLSGKPAIIPKK 23 (26)
T ss_dssp EEEEEEECSCCCEECCCC
T ss_pred EEEEEEEECCceEEcCCc
Confidence 478999999999999984
No 37
>2w1r_A Spovt, stage V sporulation protein T; regulatory GAF domain of spovt, transcription, transcription regulation, repressor, activator; 1.50A {Bacillus subtilis}
Probab=24.87 E-value=67 Score=23.41 Aligned_cols=65 Identities=14% Similarity=-0.010 Sum_probs=42.2
Q ss_pred eCCCchhHHhhhcCceEeecCCCCCCCCCCCcccCCCCccceecccceeecc------chhhhhccCCCCCCChhhHHHH
Q psy14372 50 PWGCGIVGYVAESGEPVNIPDAYLVSTPQIRIPWGCGIVCYLAESGEPVNIP------DAYLLINKFDDLAFSKNDENFV 123 (210)
Q Consensus 50 pi~~gIaG~Va~tg~~lnI~D~~~~~~~D~rF~~~~d~tGy~t~s~l~vPI~------~V~qliNK~~g~~Ft~~De~~l 123 (210)
|+ ....-.|..+|+++.+.+.. +..-....+-.-.+.+++||. |++.++ .++. .|++.+.++.
T Consensus 42 ~i-s~~~~~~i~~~k~~~~~~~~--------~~~~~~~~~~~~~s~ii~PI~~~g~viG~i~l~-~~~~-~~~~~~~~la 110 (123)
T 2w1r_A 42 SI-SEMLERTMDQRSSVLESDAK--------SVQLVNGIDEDMNSYTVGPIVANGDPIGAVVIF-SKDQ-TMGEVEHKAV 110 (123)
T ss_dssp BB-CHHHHHHHHHCSCEEESSCE--------EEESBTTCEEEESEEEEEEEEETTEEEEEEEEE-ESSS-CCCHHHHHHH
T ss_pred cc-CHHHHHHHHcCCEEEEcCCc--------cccccCCCCCCeeEEEEEEEEECCEEEEEEEEE-EcCC-CCCHHHHHHH
Confidence 44 44577799999999985532 111111112255789999996 577788 4443 2888888887
Q ss_pred HH
Q psy14372 124 EA 125 (210)
Q Consensus 124 e~ 125 (210)
+.
T Consensus 111 ~g 112 (123)
T 2w1r_A 111 ET 112 (123)
T ss_dssp HH
T ss_pred HH
Confidence 76
Done!