RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14372
         (210 letters)



>d1vhma_ d.110.2.1 (A:) Hypothetical protein YebR {Escherichia coli
           [TaxId: 562]}
          Length = 159

 Score = 39.7 bits (92), Expect = 6e-05
 Identities = 20/125 (16%), Positives = 35/125 (28%), Gaps = 6/125 (4%)

Query: 10  ASYLLYSIPWGCGIVCYLAESGEPVNIPDAYLVSTPEIRIPWGCGIVGYVAESGEPVNIP 69
           ++ L   +        YL E    V  P  +      +RIP G G+ G      +   I 
Sbjct: 31  SALLYERLTDINWAGFYLLEDDTLVLGP--FQGKIACVRIPVGRGVCGTAVARNQVQRIE 88

Query: 70  DAYLVSTPQIRIPWGCGIVCYLAESGEPVNIPDAYLLINKFDDLAFSKNDENFVEAYEKA 129
           D ++              +         +      L I+      F+  DE  +     A
Sbjct: 89  DVHVFDGHIACDAASNSEIVLPLVVKNQIIG---VLDIDSTVFGRFTDEDEQGLRQL-VA 144

Query: 130 VIAMA 134
            +   
Sbjct: 145 QLEKV 149


>d1f5ma_ d.110.2.1 (A:) Hypothetical protein ykl069wp {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 176

 Score = 39.3 bits (91), Expect = 8e-05
 Identities = 16/88 (18%), Positives = 34/88 (38%), Gaps = 12/88 (13%)

Query: 43  STPEIRIPWGCGIVGYVAESGEPVNIPDA-----YLVSTPQIRIPWGCGIVCYLAESGEP 97
                 I +G G+ G  A + E   +PD      ++    + +      +V  ++  G+ 
Sbjct: 85  KVACQMIQFGKGVCGTAASTKETQIVPDVNKYPGHIACDGETK---SEIVVPIISNDGKT 141

Query: 98  VNIPDAYLLINKFDDLAFSKNDENFVEA 125
           + +    + I+  D   F   D+ F+E 
Sbjct: 142 LGV----IDIDCLDYEGFDHVDKEFLEK 165



 Score = 28.6 bits (63), Expect = 0.38
 Identities = 7/24 (29%), Positives = 11/24 (45%)

Query: 17  IPWGCGIVCYLAESGEPVNIPDAY 40
           I +G G+    A + E   +PD  
Sbjct: 91  IQFGKGVCGTAASTKETQIVPDVN 114


>d1mc0a1 d.110.2.1 (A:215-401) 3',5'-cyclic nucleotide
           phosphodiesterase 2A, GAF A and GAF B domains {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 187

 Score = 33.0 bits (74), Expect = 0.014
 Identities = 24/159 (15%), Positives = 46/159 (28%), Gaps = 14/159 (8%)

Query: 21  CGIVCYLAESGEPVNIPDAYLVSTPEIRIPWGCGIVGYVAESGEPVNIPDAYLVSTPQIR 80
           C ++    ++ +         V   E+  P   G +G V E  + + + D       Q++
Sbjct: 40  CCLLLVSEDNLQLSCKVIGDKVLGEEVSFPLTMGRLGQVVEDKQCIQLKDLTSDDVQQLQ 99

Query: 81  IPWGCGIVCYLAESGEPVNIPDAYL---LINKFDDLAFSKNDENFVEAYEKAVIAMAKQS 137
              GC +   L                   NK     F+  DE+ ++            S
Sbjct: 100 NMLGCELQAMLCVPVISRATDQVVALACAFNKLGGDFFTDEDEHVIQHCF-HYTGTVLTS 158

Query: 138 VTLDVLSYHASASLEDAQRLRSNNSSLIVPMAKQSVTLD 176
                         +  Q+L+    +L+         LD
Sbjct: 159 TLA----------FQKEQKLKCECQALLQVAKNLFTHLD 187


>d1rrqa2 d.113.1.3 (A:234-360) Adenine glycosylase MutY, C-terminal
           domain {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 127

 Score = 25.5 bits (55), Expect = 2.9
 Identities = 7/44 (15%), Positives = 15/44 (34%), Gaps = 2/44 (4%)

Query: 87  IVCYLAE--SGEPVNIPDAYLLINKFDDLAFSKNDENFVEAYEK 128
           +  +      G PV  P      ++    AF  + +     Y++
Sbjct: 81  LTVFPGRLVHGGPVEEPYRLAPEDELKAYAFPVSHQRVWREYKE 124


>d1ggxa_ d.22.1.1 (A:) Red fluorescent protein (fp583 or
           dsred(clontech)) {Coral (Discosoma sp.) [TaxId: 86600]}
          Length = 219

 Score = 26.2 bits (58), Expect = 3.1
 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 94  SGEPVNIPDAYLLINKFDDLAFSKNDENFVEAYEKAV 130
           + +PV +P  Y + +K D  +    D   VE YE+  
Sbjct: 177 AKKPVQLPGYYYVDSKLDITS-HNEDYTIVEQYERTE 212


>d1s5ua_ d.38.1.1 (A:) Hypothetical protein YbgC {Escherichia coli
           [TaxId: 562]}
          Length = 129

 Score = 24.3 bits (52), Expect = 7.8
 Identities = 5/24 (20%), Positives = 12/24 (50%), Gaps = 2/24 (8%)

Query: 87  IVCYLAESGEPVNIPDAYLLINKF 110
           +VC      +P  +P +  ++ +F
Sbjct: 108 VVCVDPLKMKPRALPKS--IVAEF 129


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.132    0.391 

Gapped
Lambda     K      H
   0.267   0.0653    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 756,100
Number of extensions: 33759
Number of successful extensions: 118
Number of sequences better than 10.0: 1
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 9
Length of query: 210
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 129
Effective length of database: 1,295,466
Effective search space: 167115114
Effective search space used: 167115114
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.6 bits)