BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14373
(65 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B2R|A Chain A, Crystal Structure Of Pde5a1 Catalytic Domain In Complex
With Vardenafil
pdb|3B2R|B Chain B, Crystal Structure Of Pde5a1 Catalytic Domain In Complex
With Vardenafil
Length = 330
Score = 28.9 bits (63), Expect = 0.70, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 7 THTQSLIQCQRVQSLRVPSAAKLNLHDFKFDDIHMEDDDT 46
+H + + Q + + VPSA L + DF F D + D +T
Sbjct: 2 SHMEETRELQSLAAAVVPSAQTLKITDFSFSDFELSDLET 41
>pdb|3SHY|A Chain A, Crystal Structure Of The Pde5a1 Catalytic Domain In
Complex With Novel Inhibitors
pdb|3SHZ|A Chain A, Crystal Structure Of The Pde5a1 Catalytic Domain In
Complex With Novel Inhibitors
pdb|3SIE|A Chain A, Crystal Structure Of The Pde5a1 Catalytic Domain In
Complex With Novel Inhibitors
pdb|3SIE|B Chain B, Crystal Structure Of The Pde5a1 Catalytic Domain In
Complex With Novel Inhibitors
pdb|3TSE|A Chain A, Crystal Structure Of The Pde5a1 Catalytic Domain In
Complex With Novel Inhibitors
pdb|3TSF|A Chain A, Crystal Structure Of The Pde5a1 Catalytic Domain In
Complex With Novel Inhibitors
Length = 347
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 7 THTQSLIQCQRVQSLRVPSAAKLNLHDFKFDDIHMEDDDT 46
+H + + Q + + VPSA L + DF F D + D +T
Sbjct: 19 SHMEETRELQSLAAAVVPSAQTLKITDFSFSDFELSDLET 58
>pdb|3JWQ|A Chain A, Crystal Structure Of Chimeric Pde5/pde6 Catalytic Domain
Complexed With Sildenafil
pdb|3JWQ|B Chain B, Crystal Structure Of Chimeric Pde5/pde6 Catalytic Domain
Complexed With Sildenafil
pdb|3JWQ|C Chain C, Crystal Structure Of Chimeric Pde5/pde6 Catalytic Domain
Complexed With Sildenafil
pdb|3JWQ|D Chain D, Crystal Structure Of Chimeric Pde5/pde6 Catalytic Domain
Complexed With Sildenafil
pdb|3JWR|A Chain A, Crystal Structure Of Chimeric Pde5PDE6 CATALYTIC DOMAIN
Complexed With 3-Isobutyl-1-Methylxanthine (Ibmx) And
Pde6 Gamma-Subunit Inhibitory Peptide 70-87.
pdb|3JWR|B Chain B, Crystal Structure Of Chimeric Pde5PDE6 CATALYTIC DOMAIN
Complexed With 3-Isobutyl-1-Methylxanthine (Ibmx) And
Pde6 Gamma-Subunit Inhibitory Peptide 70-87
Length = 330
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 7 THTQSLIQCQRVQSLRVPSAAKLNLHDFKFDDIHMEDDDT 46
+H + + Q + + VPSA L + DF F D + D +T
Sbjct: 2 SHMEETRELQSLAAAVVPSAQTLKITDFSFSDFELSDLET 41
>pdb|2ED6|A Chain A, Crystal Structure Of Envelope Protein Vp28 From White
Spot Syndrome Virus (Wssv)
pdb|2ED6|B Chain B, Crystal Structure Of Envelope Protein Vp28 From White
Spot Syndrome Virus (Wssv)
pdb|2ED6|C Chain C, Crystal Structure Of Envelope Protein Vp28 From White
Spot Syndrome Virus (Wssv)
pdb|2ED6|D Chain D, Crystal Structure Of Envelope Protein Vp28 From White
Spot Syndrome Virus (Wssv)
pdb|2ED6|E Chain E, Crystal Structure Of Envelope Protein Vp28 From White
Spot Syndrome Virus (Wssv)
pdb|2ED6|F Chain F, Crystal Structure Of Envelope Protein Vp28 From White
Spot Syndrome Virus (Wssv)
pdb|2ED6|G Chain G, Crystal Structure Of Envelope Protein Vp28 From White
Spot Syndrome Virus (Wssv)
pdb|2ED6|H Chain H, Crystal Structure Of Envelope Protein Vp28 From White
Spot Syndrome Virus (Wssv)
pdb|2ED6|I Chain I, Crystal Structure Of Envelope Protein Vp28 From White
Spot Syndrome Virus (Wssv)
pdb|2ED6|J Chain J, Crystal Structure Of Envelope Protein Vp28 From White
Spot Syndrome Virus (Wssv)
pdb|2ED6|K Chain K, Crystal Structure Of Envelope Protein Vp28 From White
Spot Syndrome Virus (Wssv)
pdb|2ED6|L Chain L, Crystal Structure Of Envelope Protein Vp28 From White
Spot Syndrome Virus (Wssv)
Length = 170
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 5 ILTHTQSLIQCQRVQSLRVPSAAKLNLHDFKFDDIHMEDDDTLKVR 50
I THT + I+ ++LR+P A++ FK D+ + D K++
Sbjct: 6 IETHTDN-IETNMDENLRIPVTAEVGSGYFKMTDVSFDSDTLGKIK 50
>pdb|1XOZ|A Chain A, Catalytic Domain Of Human Phosphodiesterase 5a In
Complex With Tadalafil
pdb|1XP0|A Chain A, Catalytic Domain Of Human Phosphodiesterase 5a In
Complex With Vardenafil
Length = 364
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 14 QCQRVQSLRVPSAAKLNLHDFKFDDIHMEDDDT 46
+ Q + + VPSA L + DF F D + D +T
Sbjct: 27 ELQSLAAAVVPSAQTLKITDFSFSDFELSDLET 59
>pdb|1T9S|A Chain A, Catalytic Domain Of Human Phosphodiesterase 5a In
Complex With Gmp
pdb|1T9S|B Chain B, Catalytic Domain Of Human Phosphodiesterase 5a In
Complex With Gmp
pdb|1TBF|A Chain A, Catalytic Domain Of Human Phosphodiesterase 5a In
Complex With Sildenafil
Length = 347
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 14 QCQRVQSLRVPSAAKLNLHDFKFDDIHMEDDDT 46
+ Q + + VPSA L + DF F D + D +T
Sbjct: 27 ELQSLAAAVVPSAQTLKITDFSFSDFELSDLET 59
>pdb|2CHM|A Chain A, Crystal Structure Of N2 Substituted Pyrazolo
Pyrimidinones- A Flipped Binding Mode In Pde5
pdb|3TGE|A Chain A, A Novel Series Of Potent And Selective Pde5 Inhibitor1
pdb|3TGG|A Chain A, A Novel Series Of Potent And Selective Pde5 Inhibitor2
Length = 326
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 14 QCQRVQSLRVPSAAKLNLHDFKFDDIHMEDDDT 46
+ Q + + VPSA L + DF F D + D +T
Sbjct: 6 ELQSLAAAVVPSAQTLKITDFSFSDFELSDLET 38
>pdb|3HC8|A Chain A, Investigation Of Aminopyridiopyrazinones As Pde5
Inhibitors: Evaluation Of Modifications To The Central
Ring System.
pdb|3HDZ|A Chain A, Identification, Synthesis, And Sar Of Amino Substituted
Pyrido[3,2b]pryaziones As Potent And Selective Pde5
Inhibitors
Length = 324
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 14 QCQRVQSLRVPSAAKLNLHDFKFDDIHMEDDDT 46
+ Q + + VPSA L + DF F D + D +T
Sbjct: 4 ELQSLAAAVVPSAQTLKITDFSFSDFELSDLET 36
>pdb|1T9R|A Chain A, Catalytic Domain Of Human Phosphodiesterase 5a
Length = 366
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 14 QCQRVQSLRVPSAAKLNLHDFKFDDIHMEDDDT 46
+ Q + + VPSA L + DF F D + D +T
Sbjct: 30 ELQSLAAAVVPSAQTLKITDFSFSDFELSDLET 62
>pdb|1RKP|A Chain A, Crystal Structure Of Pde5a1-Ibmx
Length = 326
Score = 26.6 bits (57), Expect = 3.3, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 14 QCQRVQSLRVPSAAKLNLHDFKFDDIHMEDDDT 46
+ Q + + VPSA L + DF F D + D +T
Sbjct: 5 ELQSLAAAVVPSAQTLKITDFSFSDFELSDLET 37
>pdb|2H40|A Chain A, Crystal Structure Of The Catalytic Domain Of Unliganded
Pde5
pdb|2H42|A Chain A, Crystal Structure Of Pde5 In Complex With Sildenafil
pdb|2H42|B Chain B, Crystal Structure Of Pde5 In Complex With Sildenafil
pdb|2H42|C Chain C, Crystal Structure Of Pde5 In Complex With Sildenafil
pdb|2H44|A Chain A, Crystal Structure Of Pde5a1 In Complex With Icarisid Ii
Length = 326
Score = 26.6 bits (57), Expect = 3.3, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 14 QCQRVQSLRVPSAAKLNLHDFKFDDIHMEDDDT 46
+ Q + + VPSA L + DF F D + D +T
Sbjct: 5 ELQSLAAAVVPSAQTLKITDFSFSDFELSDLET 37
>pdb|3BJC|A Chain A, Crystal Structure Of The Pde5a Catalytic Domain In Complex
With A Novel Inhibitor
Length = 878
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 14 QCQRVQSLRVPSAAKLNLHDFKFDDIHMEDDDT 46
+ Q + + VPSA L + DF F D + D +T
Sbjct: 542 ELQSLAAAVVPSAQTLKITDFSFSDFELSDLET 574
>pdb|1UDT|A Chain A, Crystal Structure Of Human Phosphodiesterase 5 Complexed
With Sildenafil(Viagra)
pdb|1UDU|A Chain A, Crystal Structure Of Human Phosphodiesterase 5 Complexed
With Tadalafil(Cialis)
pdb|1UDU|B Chain B, Crystal Structure Of Human Phosphodiesterase 5 Complexed
With Tadalafil(Cialis)
pdb|1UHO|A Chain A, Crystal Structure Of Human Phosphodiesterase 5 Complexed
With Vardenafil(Levitra)
Length = 324
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 14 QCQRVQSLRVPSAAKLNLHDFKFDDIHMEDDDT 46
+ Q + + VPSA L + DF F D + D +T
Sbjct: 3 ELQSLAAAVVPSAQTLKITDFSFSDFELSDLET 35
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,591,222
Number of Sequences: 62578
Number of extensions: 42128
Number of successful extensions: 97
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 85
Number of HSP's gapped (non-prelim): 13
length of query: 65
length of database: 14,973,337
effective HSP length: 36
effective length of query: 29
effective length of database: 12,720,529
effective search space: 368895341
effective search space used: 368895341
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)