Query psy14373
Match_columns 65
No_of_seqs 59 out of 61
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 18:12:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14373.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14373hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3itu_A CGMP-dependent 3',5'-cy 95.5 0.004 1.4E-07 45.6 1.3 43 9-51 2-46 (345)
2 1tbf_A CGMP-specific 3',5'-cyc 85.7 0.12 4.2E-06 37.6 -0.5 41 9-49 19-62 (347)
3 3ibj_A CGMP-dependent 3',5'-cy 68.1 1.3 4.3E-05 33.5 0.4 42 10-51 364-407 (691)
4 2our_A CAMP and CAMP-inhibited 59.0 2.8 9.7E-05 30.1 0.8 35 9-43 5-39 (331)
5 3bjc_A CGMP-specific 3',5'-cyc 35.8 3.7 0.00013 32.2 -1.8 40 10-49 535-577 (878)
6 1ttz_A Conserved hypothetical 32.5 8.2 0.00028 22.1 -0.3 13 47-59 5-17 (87)
7 3uwl_A TS, tsase, thymidylate 30.4 32 0.0011 24.9 2.5 15 29-43 288-302 (315)
8 2g8o_A TS, tsase, thymidylate 30.3 29 0.001 24.5 2.3 16 29-44 237-252 (264)
9 1bkp_A Thymidylate synthase A; 30.2 32 0.0011 24.5 2.5 16 29-44 251-266 (278)
10 1j3k_C Bifunctional dihydrofol 25.0 41 0.0014 24.7 2.3 16 29-44 301-316 (328)
11 3hr1_A CAMP and CAMP-inhibited 24.6 15 0.00051 27.2 -0.1 35 9-43 36-70 (380)
12 1f28_A Thymidylate synthase; b 24.6 21 0.0007 25.8 0.6 16 29-44 270-285 (297)
13 3qj7_A TS, tsase, thymidylate 24.0 22 0.00074 25.4 0.6 15 29-43 237-251 (264)
14 3kgb_A Thymidylate synthase 1/ 22.9 23 0.0008 25.6 0.6 16 29-44 267-282 (294)
15 3ed7_A Tsase, TS, thymidylate 22.7 24 0.00081 25.6 0.6 16 29-44 268-283 (295)
16 1hw4_A TS, thymidylate synthas 22.6 24 0.00081 26.3 0.6 16 29-44 328-343 (355)
17 2k8s_A Thioredoxin; dimer, str 22.0 18 0.00061 19.2 -0.1 14 46-59 5-18 (80)
18 1ilo_A Conserved hypothetical 21.9 16 0.00056 18.6 -0.3 9 51-59 9-17 (77)
19 1nho_A Probable thioredoxin; b 21.2 23 0.00077 18.2 0.2 10 50-59 10-19 (85)
20 4e6k_G BFD, bacterioferritin-a 20.8 15 0.00053 21.1 -0.6 13 46-58 31-43 (73)
21 1fo5_A Thioredoxin; disulfide 20.5 24 0.00082 18.1 0.2 10 50-59 11-20 (85)
22 2aaz_A TS, tsase, thymidylate 20.5 25 0.00087 25.6 0.4 15 30-44 291-305 (317)
No 1
>3itu_A CGMP-dependent 3',5'-cyclic phosphodiesterase; Zn-binding, all-alpha-helical, alternative splicing, hydrolase, membrane, polymorphism; HET: IBM; 1.58A {Homo sapiens} PDB: 3itm_A* 1z1l_A
Probab=95.50 E-value=0.004 Score=45.59 Aligned_cols=43 Identities=14% Similarity=0.139 Sum_probs=36.2
Q ss_pred hcCHHHHHHHHHhccCCccc--cccccccCCceeccccceeeeec
Q psy14373 9 TQSLIQCQRVQSLRVPSAAK--LNLHDFKFDDIHMEDDDTLKVRS 51 (65)
Q Consensus 9 taSl~e~qRl~vllVpsa~~--~~lfDfeFdD~~lSdddTl~a~~ 51 (65)
+++.+|++|+++.-||+... ..+.+|.|++++++++|++++..
T Consensus 2 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~~~~l~~~e~~~~~~ 46 (345)
T 3itu_A 2 SAMDDEYTKLLHDGIQPVAAIDSNFASFTYTPRSLPEDDTSMAIL 46 (345)
T ss_dssp ---CHHHHHHHHSCCCCGGGTCTTTTSTTCCGGGSCGGGHHHHHH
T ss_pred CCCHHHHHHHHhcCCCChhhccCCcCeeeecCCCCCchHHHHHHH
Confidence 68999999999999999776 57999999999999999998765
No 2
>1tbf_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5A, hydrolase; HET: VIA; 1.30A {Homo sapiens} SCOP: a.211.1.2 PDB: 1t9s_A* 1xoz_A* 1xp0_A* 2chm_A* 3tge_A* 3tgg_A* 3hc8_A* 3hdz_A* 1t9r_A* 3sie_A* 3shy_A* 3shz_A* 3b2r_A* 2h44_A* 2h42_A* 2h40_A* 1rkp_A* 1udt_A* 1udu_A* 1uho_A* ...
Probab=85.74 E-value=0.12 Score=37.58 Aligned_cols=41 Identities=32% Similarity=0.458 Sum_probs=33.3
Q ss_pred hcCHHHHHHHHH---hccCCccccccccccCCceeccccceeee
Q psy14373 9 TQSLIQCQRVQS---LRVPSAAKLNLHDFKFDDIHMEDDDTLKV 49 (65)
Q Consensus 9 taSl~e~qRl~v---llVpsa~~~~lfDfeFdD~~lSdddTl~a 49 (65)
+++.+|++|++. ..+|++...++.++.|+.+++++++.+++
T Consensus 19 ~~~~~e~~~l~~~~~~~lp~~~~~~l~~w~Fd~~~l~~~~~~~~ 62 (347)
T 1tbf_A 19 SHMEEETRELQSLAAAVVPSAQTLKITDFSFSDFELSDLETALC 62 (347)
T ss_dssp ---CHHHHHHHHHHHSCCCCHHHHTTTCTTCCCTTCCHHHHHHH
T ss_pred cCCHHHHHHHhhcccccCChhhhcCCCCCCCCcccCCchhHHHH
Confidence 578999999996 45899888999999999999998887654
No 3
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=68.12 E-value=1.3 Score=33.47 Aligned_cols=42 Identities=17% Similarity=0.188 Sum_probs=34.5
Q ss_pred cCHHHHHHHHHhccCCcccc--ccccccCCceeccccceeeeec
Q psy14373 10 QSLIQCQRVQSLRVPSAAKL--NLHDFKFDDIHMEDDDTLKVRS 51 (65)
Q Consensus 10 aSl~e~qRl~vllVpsa~~~--~lfDfeFdD~~lSdddTl~a~~ 51 (65)
++.+|.+++..-.+|+...+ .+.+|.|++.++++++++++..
T Consensus 364 ~~~~e~~~ll~~~i~~~~~~~~~~~~f~f~~~~l~~~~~~~~~~ 407 (691)
T 3ibj_A 364 VSDDEYTKLLHDGIQPVAAIDSNFASFTYTPRSLPEDDTSMAIL 407 (691)
T ss_dssp CCHHHHHHHCSSCCCCSTTTCTTTTSTTCCGGGSCSSSHHHHHH
T ss_pred cCHHHHHHHHhcCCCchhhhhhhccccccCCcCCCchHHHHHHH
Confidence 57788888877778888765 7889999999999999887654
No 4
>2our_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; PDE10, substrate specificity, hydrolase; HET: CMP; 1.45A {Homo sapiens} PDB: 2ous_A 2ouu_A* 3sn7_A* 3sni_A* 3snl_A* 4dff_A* 2wey_A* 2oun_A* 2oup_A 2ouq_A* 2ouv_A 2ouy_A* 4ael_A* 2y0j_A* 4ddl_A* 3uuo_A* 3ui7_A* 2o8h_A* 2ovv_A* 2ovy_A* ...
Probab=59.00 E-value=2.8 Score=30.08 Aligned_cols=35 Identities=17% Similarity=0.173 Sum_probs=30.9
Q ss_pred hcCHHHHHHHHHhccCCccccccccccCCceeccc
Q psy14373 9 TQSLIQCQRVQSLRVPSAAKLNLHDFKFDDIHMED 43 (65)
Q Consensus 9 taSl~e~qRl~vllVpsa~~~~lfDfeFdD~~lSd 43 (65)
.++.+|.|++....+|+....++.++.|+.+++++
T Consensus 5 ~~~~~e~~~l~~~~~~~~~~~~~~~w~F~~~~l~~ 39 (331)
T 2our_A 5 ICTSEEWQGLMQFTLPVRLCKEIELFHFDIGPFEN 39 (331)
T ss_dssp CCCHHHHHHHTTCCCCHHHHHHTTSTTCCCGGGGG
T ss_pred ccCHHHHHHHHhcCCcHHHHcCcCcCCCCcccccH
Confidence 47899999999988898877899999999998876
No 5
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=35.78 E-value=3.7 Score=32.16 Aligned_cols=40 Identities=35% Similarity=0.509 Sum_probs=29.6
Q ss_pred cCHHHHHHHHHh---ccCCccccccccccCCceeccccceeee
Q psy14373 10 QSLIQCQRVQSL---RVPSAAKLNLHDFKFDDIHMEDDDTLKV 49 (65)
Q Consensus 10 aSl~e~qRl~vl---lVpsa~~~~lfDfeFdD~~lSdddTl~a 49 (65)
.+.+|+++++.. .+|+....++.++.|+++.+++++.+++
T Consensus 535 ~~~ee~~~l~~~l~~~lp~~~~~~~~~~~Fd~f~l~~~e~~~~ 577 (878)
T 3bjc_A 535 AAEEETRELQSLAAAVVPSAQTLKITDFSFSDFELSDLETALC 577 (878)
T ss_dssp ---CCHHHHHHHHHSCCCCHHHHTTTCTTCCCTTCCHHHHHHH
T ss_pred CCHHHHHHhcccccccCCchhhhccccccceeeecCchhHHHH
Confidence 455667777643 4788877899999999999998887654
No 6
>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A
Probab=32.53 E-value=8.2 Score=22.08 Aligned_cols=13 Identities=38% Similarity=0.836 Sum_probs=9.5
Q ss_pred eeeeccccccccc
Q psy14373 47 LKVRSNCGLCRSM 59 (65)
Q Consensus 47 l~a~~~~~~~~~~ 59 (65)
+-.+.+||+|+.+
T Consensus 5 ~f~a~~C~~C~~~ 17 (87)
T 1ttz_A 5 LYQRDDCHLCDQA 17 (87)
T ss_dssp EEECSSCHHHHHH
T ss_pred EEECCCCchHHHH
Confidence 3456799999864
No 7
>3uwl_A TS, tsase, thymidylate synthase; methyltransferase, transferase; HET: CME FOZ; 2.07A {Enterococcus faecalis} PDB: 3ik0_A* 1lcb_A* 1lce_A* 1lca_A* 1thy_A* 1tsl_A* 1tsm_A* 2tdm_A* 3bnz_A* 3byx_A* 3bz0_A* 3c06_A* 3c0a_A* 1nje_A* 3ijz_A* 3ik1_A* 4tms_A 1tsy_A* 1tsz_A 2g86_A* ...
Probab=30.43 E-value=32 Score=24.90 Aligned_cols=15 Identities=33% Similarity=0.722 Sum_probs=13.0
Q ss_pred cccccccCCceeccc
Q psy14373 29 LNLHDFKFDDIHMED 43 (65)
Q Consensus 29 ~~lfDfeFdD~~lSd 43 (65)
-.++||+++||++.+
T Consensus 288 ~~i~d~~~~Df~l~~ 302 (315)
T 3uwl_A 288 ASVFDFDMEDIKVEG 302 (315)
T ss_dssp CCGGGCCGGGEEEES
T ss_pred CccccCCHHHEEEeC
Confidence 468999999999876
No 8
>2g8o_A TS, tsase, thymidylate synthase; methyltransferase, DUMP, antifolate, high-resolution, ternar complex, beta sheet, alpha/beta protein; HET: CXM UMP CB3; 1.30A {Escherichia coli} SCOP: d.117.1.1 PDB: 1aob_A* 1f4c_A* 1f4e_A* 1f4f_A* 1jtq_A* 1jtu_A* 1jut_A* 1kce_A* 1kzi_A* 1tls_A* 1tsn_A* 1f4b_A* 2bbq_A* 2ftq_A* 2a9w_A* 2kce_A* 3b9h_A* 3bhl_A* 3bhr_A* 3tms_A ...
Probab=30.30 E-value=29 Score=24.48 Aligned_cols=16 Identities=25% Similarity=0.677 Sum_probs=13.5
Q ss_pred cccccccCCceecccc
Q psy14373 29 LNLHDFKFDDIHMEDD 44 (65)
Q Consensus 29 ~~lfDfeFdD~~lSdd 44 (65)
-.++||+|+||++.+=
T Consensus 237 ~~~~d~~~~df~l~~Y 252 (264)
T 2g8o_A 237 ESIFDYRFEDFEIEGY 252 (264)
T ss_dssp SSTTCCCGGGEEEESC
T ss_pred CchhcCChhHEEEeCC
Confidence 4789999999998763
No 9
>1bkp_A Thymidylate synthase A; methyltransferase, DTMP synthase; 1.70A {Bacillus subtilis} SCOP: d.117.1.1 PDB: 1bko_A 1bsf_A 1bsp_A 1b02_A*
Probab=30.19 E-value=32 Score=24.51 Aligned_cols=16 Identities=25% Similarity=0.484 Sum_probs=13.6
Q ss_pred cccccccCCceecccc
Q psy14373 29 LNLHDFKFDDIHMEDD 44 (65)
Q Consensus 29 ~~lfDfeFdD~~lSdd 44 (65)
-.++||+|+||++.+=
T Consensus 251 ~~~~d~~~~Df~l~~Y 266 (278)
T 1bkp_A 251 KDFYDFTIDDFKLINY 266 (278)
T ss_dssp CSGGGCCGGGEEEESC
T ss_pred CchhhCCHhHEEEeCC
Confidence 4789999999999763
No 10
>1j3k_C Bifunctional dihydrofolate reductase-thymidylate synthase; oxidoreductase, transferase; HET: WRA NDP UMP; 2.10A {Plasmodium falciparum} SCOP: d.117.1.1 PDB: 1j3i_C* 1j3j_C* 3dg8_C* 3dga_C*
Probab=24.96 E-value=41 Score=24.69 Aligned_cols=16 Identities=25% Similarity=0.567 Sum_probs=13.5
Q ss_pred cccccccCCceecccc
Q psy14373 29 LNLHDFKFDDIHMEDD 44 (65)
Q Consensus 29 ~~lfDfeFdD~~lSdd 44 (65)
-.++||+|+||++.+=
T Consensus 301 ~~i~df~~~Df~l~~Y 316 (328)
T 1j3k_C 301 KNIEDFTISDFTIQNY 316 (328)
T ss_dssp CSGGGCCGGGEEEECC
T ss_pred CchhhCCHhHEEEeCC
Confidence 4689999999998763
No 11
>3hr1_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; PDE 10A, PDE10 inhibitors, allosteric enzyme, alternative splicing; HET: PF9; 1.53A {Rattus norvegicus} PDB: 3hqy_A* 3hqz_A* 3hqw_A*
Probab=24.62 E-value=15 Score=27.16 Aligned_cols=35 Identities=17% Similarity=0.223 Sum_probs=18.9
Q ss_pred hcCHHHHHHHHHhccCCccccccccccCCceeccc
Q psy14373 9 TQSLIQCQRVQSLRVPSAAKLNLHDFKFDDIHMED 43 (65)
Q Consensus 9 taSl~e~qRl~vllVpsa~~~~lfDfeFdD~~lSd 43 (65)
..+.+|.+++....+|+.....+.++.||.+.+.+
T Consensus 36 ~~~~~e~~~~~~~~lp~~~~~~i~~~~Fd~f~l~~ 70 (380)
T 3hr1_A 36 MGTSEEWQGLMHFNLPARICRDIELFHFDIGPFEN 70 (380)
T ss_dssp -------------CCCHHHHHHTTSTTCCCCSCGG
T ss_pred CCCHHHHHHHHHccCChhhhccCCcccCCCchHHH
Confidence 45678889998888998877889999999999855
No 12
>1f28_A Thymidylate synthase; beta-sheet, protein-inhibitor complex, transferase; HET: UMP F89; 1.90A {Pneumocystis carinii} SCOP: d.117.1.1 PDB: 1ci7_A*
Probab=24.61 E-value=21 Score=25.81 Aligned_cols=16 Identities=25% Similarity=0.690 Sum_probs=13.6
Q ss_pred cccccccCCceecccc
Q psy14373 29 LNLHDFKFDDIHMEDD 44 (65)
Q Consensus 29 ~~lfDfeFdD~~lSdd 44 (65)
-.++||+|+||++.+=
T Consensus 270 ~~i~d~~~~Df~l~~Y 285 (297)
T 1f28_A 270 TDIEDFTLDDFNIQNY 285 (297)
T ss_dssp CSGGGCCGGGEEEESC
T ss_pred CchhhCChhHEEEeCC
Confidence 4789999999999763
No 13
>3qj7_A TS, tsase, thymidylate synthase; thymidilate synthase, structural genomics, TB structural GEN consortium, TBSGC, transferase; HET: UMP SPM; 2.50A {Mycobacterium tuberculosis} SCOP: d.117.1.1
Probab=23.97 E-value=22 Score=25.36 Aligned_cols=15 Identities=13% Similarity=0.600 Sum_probs=13.1
Q ss_pred cccccccCCceeccc
Q psy14373 29 LNLHDFKFDDIHMED 43 (65)
Q Consensus 29 ~~lfDfeFdD~~lSd 43 (65)
-.++||+|+||++.+
T Consensus 237 ~~~~d~~~~Df~l~~ 251 (264)
T 3qj7_A 237 DSIFEYTYEDIVVKN 251 (264)
T ss_dssp SSGGGCCGGGEEEES
T ss_pred CChhcCCHhHEEEEC
Confidence 578999999999876
No 14
>3kgb_A Thymidylate synthase 1/2; ssgcid, NIH, niaid, SBRI, UW, decode, methyltransferase, nucleotide biosynt transferase, structural genomics; 2.20A {Encephalitozoon cuniculi} SCOP: d.117.1.1
Probab=22.88 E-value=23 Score=25.60 Aligned_cols=16 Identities=13% Similarity=0.391 Sum_probs=13.3
Q ss_pred cccccccCCceecccc
Q psy14373 29 LNLHDFKFDDIHMEDD 44 (65)
Q Consensus 29 ~~lfDfeFdD~~lSdd 44 (65)
-.++||+|+||++.+=
T Consensus 267 ~~i~df~~~Df~l~~Y 282 (294)
T 3kgb_A 267 TEPEHFQYEDFELVGY 282 (294)
T ss_dssp CSGGGCCGGGEEEESC
T ss_pred CchhcCCHhHEEEeCC
Confidence 4789999999998763
No 15
>3ed7_A Tsase, TS, thymidylate synthase; transferase, methyltransferase, nucleotide biosynthesis; 1.56A {Homo sapiens} SCOP: d.117.1.1 PDB: 3ebu_A* 1hvy_A* 1ypv_A* 1hw3_A* 2onb_A* 3eaw_X* 3gg5_A 3gh0_A 3ef9_A 3edw_X 3ejl_A* 3gh2_X* 4gyh_A 4h1i_A 2rd8_A* 2rda_A 3h9k_A* 3hb8_A* 3ob7_A* 1ju6_A* ...
Probab=22.71 E-value=24 Score=25.61 Aligned_cols=16 Identities=31% Similarity=0.559 Sum_probs=13.6
Q ss_pred cccccccCCceecccc
Q psy14373 29 LNLHDFKFDDIHMEDD 44 (65)
Q Consensus 29 ~~lfDfeFdD~~lSdd 44 (65)
-.++||+|+||++.+=
T Consensus 268 ~~i~df~~~Df~l~~Y 283 (295)
T 3ed7_A 268 EKIDDFKAEDFQIEGY 283 (295)
T ss_dssp CSGGGCCGGGEEEESC
T ss_pred CChhcCCHhHEEEECC
Confidence 5789999999998763
No 16
>1hw4_A TS, thymidylate synthase; methyltransferase, transferase; HET: CME; 2.06A {Homo sapiens} SCOP: d.117.1.1 PDB: 3n5e_A 3n5g_A*
Probab=22.62 E-value=24 Score=26.33 Aligned_cols=16 Identities=31% Similarity=0.559 Sum_probs=13.6
Q ss_pred cccccccCCceecccc
Q psy14373 29 LNLHDFKFDDIHMEDD 44 (65)
Q Consensus 29 ~~lfDfeFdD~~lSdd 44 (65)
-.++||+|+||++.+=
T Consensus 328 ~~i~df~~eDf~l~~Y 343 (355)
T 1hw4_A 328 EKIDDFKAEDFQIEGY 343 (355)
T ss_dssp CSGGGCCGGGEEEESC
T ss_pred CchhhCChhHEEEeCC
Confidence 4789999999999763
No 17
>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}
Probab=22.02 E-value=18 Score=19.20 Aligned_cols=14 Identities=21% Similarity=0.567 Sum_probs=9.7
Q ss_pred eeeeeccccccccc
Q psy14373 46 TLKVRSNCGLCRSM 59 (65)
Q Consensus 46 Tl~a~~~~~~~~~~ 59 (65)
++-...+||.|+.+
T Consensus 5 ~~f~~~~C~~C~~~ 18 (80)
T 2k8s_A 5 AIFYHAGCPVCVSA 18 (80)
T ss_dssp EEEEECSCHHHHHH
T ss_pred EEEeCCCCCchHHH
Confidence 34456789999854
No 18
>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1
Probab=21.86 E-value=16 Score=18.59 Aligned_cols=9 Identities=22% Similarity=0.936 Sum_probs=7.1
Q ss_pred ccccccccc
Q psy14373 51 SNCGLCRSM 59 (65)
Q Consensus 51 ~~~~~~~~~ 59 (65)
..||.|+.+
T Consensus 9 ~wC~~C~~~ 17 (77)
T 1ilo_A 9 TGCANCQML 17 (77)
T ss_dssp SSSSTTHHH
T ss_pred CCChhHHHH
Confidence 389999864
No 19
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Probab=21.15 E-value=23 Score=18.18 Aligned_cols=10 Identities=20% Similarity=0.637 Sum_probs=7.6
Q ss_pred eccccccccc
Q psy14373 50 RSNCGLCRSM 59 (65)
Q Consensus 50 ~~~~~~~~~~ 59 (65)
...||.|+.+
T Consensus 10 ~~~C~~C~~~ 19 (85)
T 1nho_A 10 SPTCPYCPMA 19 (85)
T ss_dssp CSSSCCSTTH
T ss_pred CCCCcchHHH
Confidence 4589999864
No 20
>4e6k_G BFD, bacterioferritin-associated ferredoxin; protein complex, iron storage, iron binding, iron mobilizati ferritin, iron homeostasis; HET: HEM; 2.00A {Pseudomonas aeruginosa}
Probab=20.77 E-value=15 Score=21.10 Aligned_cols=13 Identities=38% Similarity=0.818 Sum_probs=9.9
Q ss_pred eeeeecccccccc
Q psy14373 46 TLKVRSNCGLCRS 58 (65)
Q Consensus 46 Tl~a~~~~~~~~~ 58 (65)
-++|..+||.|+.
T Consensus 31 ~t~aGt~CG~C~~ 43 (73)
T 4e6k_G 31 ATGVGTQCGKCAS 43 (73)
T ss_dssp HHCTTSSSCTTHH
T ss_pred HhCCCCCCCchHH
Confidence 4577789999974
No 21
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Probab=20.48 E-value=24 Score=18.06 Aligned_cols=10 Identities=20% Similarity=0.567 Sum_probs=7.8
Q ss_pred eccccccccc
Q psy14373 50 RSNCGLCRSM 59 (65)
Q Consensus 50 ~~~~~~~~~~ 59 (65)
...|+.|+.+
T Consensus 11 ~~~C~~C~~~ 20 (85)
T 1fo5_A 11 SPMCPHCPAA 20 (85)
T ss_dssp CCCSSCCCTH
T ss_pred CCCCCchHHH
Confidence 4689999864
No 22
>2aaz_A TS, tsase, thymidylate synthase; methyl transferase, nucleotide biosynthesis, transferase; HET: UMP CB3; 2.08A {Filobasidiella neoformans}
Probab=20.47 E-value=25 Score=25.63 Aligned_cols=15 Identities=27% Similarity=0.550 Sum_probs=12.9
Q ss_pred ccccccCCceecccc
Q psy14373 30 NLHDFKFDDIHMEDD 44 (65)
Q Consensus 30 ~lfDfeFdD~~lSdd 44 (65)
.++||+|+||++.+=
T Consensus 291 ~i~d~~~eDf~l~~Y 305 (317)
T 2aaz_A 291 DIDGFKVEDFVVEGY 305 (317)
T ss_dssp STTCCCGGGEEEECC
T ss_pred chhhCChhHEEEeCC
Confidence 689999999998763
Done!