Query psy14373
Match_columns 65
No_of_seqs 59 out of 61
Neff 4.1
Searched_HMMs 13730
Date Fri Aug 16 18:12:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14373.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/14373hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2baia1 g.87.1.1 (A:1-32) Poly 60.8 0.64 4.7E-05 22.7 -0.4 21 2-22 6-26 (32)
2 d1tbfa_ a.211.1.2 (A:) cGMP-sp 58.7 0.69 5E-05 31.2 -0.7 37 14-50 6-42 (326)
3 d1ttza_ c.47.1.1 (A:) Hypothet 32.1 5.3 0.00039 21.5 0.3 13 46-58 3-15 (75)
4 d1wjka_ c.47.1.1 (A:) Thioredo 29.9 4.5 0.00033 22.3 -0.3 14 46-59 20-33 (100)
5 d1znfa_ g.37.1.1 (A:) XFIN, th 26.7 7.5 0.00054 17.8 0.3 6 52-57 2-7 (26)
6 d1fo5a_ c.47.1.1 (A:) MJ0307, 23.1 9.2 0.00067 19.5 0.2 10 50-59 11-20 (85)
7 d1x68a2 g.39.1.3 (A:37-70) Fou 22.6 10 0.00076 18.3 0.3 6 52-57 1-6 (34)
8 d1nekb1 a.1.2.1 (B:107-238) Su 21.5 6 0.00044 22.6 -0.9 15 45-59 38-52 (132)
9 d1fxda_ d.58.1.4 (A:) Ferredox 20.3 9.5 0.00069 19.0 -0.1 11 49-59 7-17 (58)
10 d1hyua4 c.47.1.2 (A:103-198) A 20.3 8 0.00059 20.7 -0.4 11 49-59 23-33 (96)
No 1
>d2baia1 g.87.1.1 (A:1-32) Polyprotein leader polypeptide {Mengo encephalomyocarditis virus [TaxId: 12107]}
Probab=60.84 E-value=0.64 Score=22.66 Aligned_cols=21 Identities=19% Similarity=0.458 Sum_probs=17.6
Q ss_pred hhhhhhhhcCHHHHHHHHHhc
Q psy14373 2 VFRILTHTQSLIQCQRVQSLR 22 (65)
Q Consensus 2 v~ki~~~taSl~e~qRl~vll 22 (65)
...|-+|+..++||-+|+.+.
T Consensus 6 eqeicahsmtfeecpkcsalq 26 (32)
T d2baia1 6 EQEICAHSMTFEECPKCSALQ 26 (32)
T ss_dssp CSCCCSSSSCGGGHHHHHCSS
T ss_pred HHHHHHhhccHhhCcchhHHH
Confidence 346789999999999998764
No 2
>d1tbfa_ a.211.1.2 (A:) cGMP-specific 3',5'-cyclic phosphodiesterase pde5a1-Ibmx {Human (Homo sapiens) [TaxId: 9606]}
Probab=58.73 E-value=0.69 Score=31.22 Aligned_cols=37 Identities=32% Similarity=0.504 Sum_probs=29.9
Q ss_pred HHHHHHHhccCCccccccccccCCceeccccceeeee
Q psy14373 14 QCQRVQSLRVPSAAKLNLHDFKFDDIHMEDDDTLKVR 50 (65)
Q Consensus 14 e~qRl~vllVpsa~~~~lfDfeFdD~~lSdddTl~a~ 50 (65)
+.+.+....+|+....++.++.|++++.++++..++.
T Consensus 6 ~~~~~~~~~~p~~~~~~~~~~~F~~~~~~~~el~~~~ 42 (326)
T d1tbfa_ 6 ELQSLAAAVVPSAQTLKITDFSFSDFELSDLETALCT 42 (326)
T ss_dssp HHHHHHHSCCCCHHHHTTTCTTCCCTTCCHHHHHHHH
T ss_pred HHHhhhhccCCcHHHcCcCCCCcCCCcCChHHHHHHH
Confidence 3445556679999889999999999999998876654
No 3
>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]}
Probab=32.09 E-value=5.3 Score=21.51 Aligned_cols=13 Identities=46% Similarity=0.917 Sum_probs=10.8
Q ss_pred eeeeecccccccc
Q psy14373 46 TLKVRSNCGLCRS 58 (65)
Q Consensus 46 Tl~a~~~~~~~~~ 58 (65)
||-.+.+|.||..
T Consensus 3 tLyt~~~C~LCe~ 15 (75)
T d1ttza_ 3 TLYQRDDCHLCDQ 15 (75)
T ss_dssp EEEECSSCHHHHH
T ss_pred EEECCCCccHHHH
Confidence 6788999999963
No 4
>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=29.90 E-value=4.5 Score=22.26 Aligned_cols=14 Identities=36% Similarity=0.731 Sum_probs=10.5
Q ss_pred eeeeeccccccccc
Q psy14373 46 TLKVRSNCGLCRSM 59 (65)
Q Consensus 46 Tl~a~~~~~~~~~~ 59 (65)
|+-.+.+|++|+.+
T Consensus 20 ~lft~~~C~~C~~a 33 (100)
T d1wjka_ 20 TLFTKAPCPLCDEA 33 (100)
T ss_dssp EEEECSSCHHHHHH
T ss_pred EEEECCCCCChHHH
Confidence 45567899999854
No 5
>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}
Probab=26.74 E-value=7.5 Score=17.81 Aligned_cols=6 Identities=67% Similarity=1.929 Sum_probs=4.9
Q ss_pred cccccc
Q psy14373 52 NCGLCR 57 (65)
Q Consensus 52 ~~~~~~ 57 (65)
.||+|.
T Consensus 2 kcglce 7 (26)
T d1znfa_ 2 KCGLCE 7 (26)
T ss_dssp BCSSSC
T ss_pred cccchH
Confidence 599995
No 6
>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=23.11 E-value=9.2 Score=19.46 Aligned_cols=10 Identities=20% Similarity=0.567 Sum_probs=8.0
Q ss_pred eccccccccc
Q psy14373 50 RSNCGLCRSM 59 (65)
Q Consensus 50 ~~~~~~~~~~ 59 (65)
+..||.|+.|
T Consensus 11 a~wC~~C~~~ 20 (85)
T d1fo5a_ 11 SPMCPHCPAA 20 (85)
T ss_dssp CCCSSCCCTH
T ss_pred CCCCcChHhh
Confidence 5689999865
No 7
>d1x68a2 g.39.1.3 (A:37-70) Four and a half LIM domains protein 5, FHL-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.61 E-value=10 Score=18.34 Aligned_cols=6 Identities=67% Similarity=1.724 Sum_probs=4.7
Q ss_pred cccccc
Q psy14373 52 NCGLCR 57 (65)
Q Consensus 52 ~~~~~~ 57 (65)
|||.|.
T Consensus 1 ncgkcs 6 (34)
T d1x68a2 1 NCGKCS 6 (34)
T ss_dssp BCTTTC
T ss_pred CCccce
Confidence 788885
No 8
>d1nekb1 a.1.2.1 (B:107-238) Succinate dehydogenase {Escherichia coli [TaxId: 562]}
Probab=21.47 E-value=6 Score=22.58 Aligned_cols=15 Identities=27% Similarity=0.412 Sum_probs=11.7
Q ss_pred ceeeeeccccccccc
Q psy14373 45 DTLKVRSNCGLCRSM 59 (65)
Q Consensus 45 dTl~a~~~~~~~~~~ 59 (65)
+-+..++.||.|.+.
T Consensus 38 ~~~~~CI~CG~C~~~ 52 (132)
T d1nekb1 38 DGLYECILCACCSTS 52 (132)
T ss_dssp TTTSCCCCCCHHHHT
T ss_pred HhhHHHhHhhhhhhh
Confidence 346789999999763
No 9
>d1fxda_ d.58.1.4 (A:) Ferredoxin I {Desulfovibrio gigas [TaxId: 879]}
Probab=20.30 E-value=9.5 Score=19.02 Aligned_cols=11 Identities=18% Similarity=0.453 Sum_probs=8.5
Q ss_pred eeccccccccc
Q psy14373 49 VRSNCGLCRSM 59 (65)
Q Consensus 49 a~~~~~~~~~~ 59 (65)
-.++||+|..+
T Consensus 7 ~CigCg~C~~~ 17 (58)
T d1fxda_ 7 DCMACEACVEI 17 (58)
T ss_dssp TCCCCCHHHHH
T ss_pred cCcChhhHHHH
Confidence 37899999753
No 10
>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=20.30 E-value=8 Score=20.74 Aligned_cols=11 Identities=18% Similarity=0.525 Sum_probs=8.6
Q ss_pred eeccccccccc
Q psy14373 49 VRSNCGLCRSM 59 (65)
Q Consensus 49 a~~~~~~~~~~ 59 (65)
.+..||.|+.|
T Consensus 23 ~s~~C~~C~~~ 33 (96)
T d1hyua4 23 YSLSCHNCPDV 33 (96)
T ss_dssp ECTTCSSHHHH
T ss_pred ECCCCcchHHH
Confidence 36689999865
Done!