RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14373
         (65 letters)



>d1tbfa_ a.211.1.2 (A:) cGMP-specific 3',5'-cyclic
          phosphodiesterase pde5a1-Ibmx {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 326

 Score = 30.4 bits (68), Expect = 0.007
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 16 QRVQSLRVPSAAKLNLHDFKFDDIHMEDDDTLKV 49
          Q + +  VPSA  L + DF F D  + D +T   
Sbjct: 8  QSLAAAVVPSAQTLKITDFSFSDFELSDLETALC 41


>d1k46a_ d.195.1.1 (A:) YopH tyrosine phosphatase N-terminal
          domain {Yersinia pseudotuberculosis [TaxId: 633]}
          Length = 124

 Score = 21.9 bits (46), Expect = 8.1
 Identities = 7/35 (20%), Positives = 18/35 (51%)

Query: 5  ILTHTQSLIQCQRVQSLRVPSAAKLNLHDFKFDDI 39
          +L+H  +++  Q   +  + S  K NL+++    +
Sbjct: 58 VLSHVANVVLTQEDTAKLLQSTVKHNLNNYDLRSV 92


>d1bkpa_ d.117.1.1 (A:) Thymidylate synthase {Bacillus subtilis
           [TaxId: 1423]}
          Length = 278

 Score = 21.6 bits (45), Expect = 9.7
 Identities = 4/14 (28%), Positives = 8/14 (57%)

Query: 30  NLHDFKFDDIHMED 43
           + +DF  DD  + +
Sbjct: 252 DFYDFTIDDFKLIN 265


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.134    0.397 

Gapped
Lambda     K      H
   0.267   0.0541    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 223,081
Number of extensions: 7165
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 5
Length of query: 65
Length of database: 2,407,596
Length adjustment: 34
Effective length of query: 31
Effective length of database: 1,940,776
Effective search space: 60164056
Effective search space used: 60164056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.3 bits)