BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14374
(180 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 74/103 (71%), Gaps = 10/103 (9%)
Query: 2 ITAYHEGGHAVVAFFTKDSHPLHKVTHPLHKVTIIPRGV-SLGHTAYIPEKERYHVTKSQ 60
I AYHE GHAVV+ + P+H+++ IIPRG +LG+T ++PE+++Y V++++
Sbjct: 274 IIAYHEAGHAVVSTVVPNGEPVHRIS-------IIPRGYKALGYTLHLPEEDKYLVSRNE 326
Query: 61 LMAMMDTMMGGRAAEELVFGAEKVTSGASSDLVQATSIATHMV 103
L+ + ++GGRAAEE+VFG VTSGA++D+ +AT IA +MV
Sbjct: 327 LLDKLTALLGGRAAEEVVFG--DVTSGAANDIERATEIARNMV 367
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 58/72 (80%), Gaps = 3/72 (4%)
Query: 108 VTIIPRGV-SLGHTAYIPEKERYHVTKSQLMAMMDTMMGGRAAEELVFGAEKVTSGASSD 166
++IIPRG +LG+T ++PE+++Y V++++L+ + ++GGRAAEE+VFG VTSGA++D
Sbjct: 298 ISIIPRGYKALGYTLHLPEEDKYLVSRNELLDKLTALLGGRAAEEVVFG--DVTSGAAND 355
Query: 167 LVQATSIATHMV 178
+ +AT IA +MV
Sbjct: 356 IERATEIARNMV 367
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 74/103 (71%), Gaps = 10/103 (9%)
Query: 2 ITAYHEGGHAVVAFFTKDSHPLHKVTHPLHKVTIIPRGV-SLGHTAYIPEKERYHVTKSQ 60
I AYHE GHAVV+ + P+H+++ IIPRG +LG+T ++PE+++Y V++++
Sbjct: 274 IIAYHEAGHAVVSTVVPNGEPVHRIS-------IIPRGYKALGYTLHLPEEDKYLVSRNE 326
Query: 61 LMAMMDTMMGGRAAEELVFGAEKVTSGASSDLVQATSIATHMV 103
L+ + ++GGRAAEE+VFG VTSGA++D+ +AT IA +MV
Sbjct: 327 LLDKLTALLGGRAAEEVVFG--DVTSGAANDIERATEIARNMV 367
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 58/72 (80%), Gaps = 3/72 (4%)
Query: 108 VTIIPRGV-SLGHTAYIPEKERYHVTKSQLMAMMDTMMGGRAAEELVFGAEKVTSGASSD 166
++IIPRG +LG+T ++PE+++Y V++++L+ + ++GGRAAEE+VFG VTSGA++D
Sbjct: 298 ISIIPRGYKALGYTLHLPEEDKYLVSRNELLDKLTALLGGRAAEEVVFG--DVTSGAAND 355
Query: 167 LVQATSIATHMV 178
+ +AT IA +MV
Sbjct: 356 IERATEIARNMV 367
>pdb|2DI4|A Chain A, Crystal Structure Of The Ftsh Protease Domain
pdb|2DI4|B Chain B, Crystal Structure Of The Ftsh Protease Domain
Length = 238
Score = 80.1 bits (196), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 62/100 (62%), Gaps = 7/100 (7%)
Query: 4 AYHEGGHAVVAFFTKDSHPLHKVTHPLHKVTIIPRGVSLGHTAYIPEKERYHVTKSQLMA 63
A HE GHA++ + D +HK++ IIPRG++LG T +P ++++ K L
Sbjct: 20 AIHEAGHALMGLVSDDDDKVHKIS-------IIPRGMALGVTQQLPIEDKHIYDKKDLYN 72
Query: 64 MMDTMMGGRAAEELVFGAEKVTSGASSDLVQATSIATHMV 103
+ ++GGRAAEE+ FG + +T+GA +DL +AT +A MV
Sbjct: 73 KILVLLGGRAAEEVFFGKDGITTGAENDLQRATDLAYRMV 112
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 49/71 (69%)
Query: 108 VTIIPRGVSLGHTAYIPEKERYHVTKSQLMAMMDTMMGGRAAEELVFGAEKVTSGASSDL 167
++IIPRG++LG T +P ++++ K L + ++GGRAAEE+ FG + +T+GA +DL
Sbjct: 42 ISIIPRGMALGVTQQLPIEDKHIYDKKDLYNKILVLLGGRAAEEVFFGKDGITTGAENDL 101
Query: 168 VQATSIATHMV 178
+AT +A MV
Sbjct: 102 QRATDLAYRMV 112
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 76.3 bits (186), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 65/106 (61%), Gaps = 12/106 (11%)
Query: 2 ITAYHEGGHAVVAFFTKDSHPLHKVTHPLHKVTIIPRGVSLGHTAYIPEKER-YHVTKSQ 60
ITAYHE GHA+ A F + + +HKVTI+PRG +LG +P +E H ++ +
Sbjct: 298 ITAYHEAGHALAAHFLEHA-------DGVHKVTIVPRGRALGF--MMPRREDMLHWSRKR 348
Query: 61 LMAMMDTMMGGRAAEELVFGAEKVTSGASSDLVQATSIATHMVREF 106
L+ + + GRAAEE+VF + VT+GA +D QAT +A M+ E+
Sbjct: 349 LLDQIAVALAGRAAEEIVF--DDVTTGAENDFRQATELARRMITEW 392
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 5/74 (6%)
Query: 108 VTIIPRGVSLGHTAYIPEKER-YHVTKSQLMAMMDTMMGGRAAEELVFGAEKVTSGASSD 166
VTI+PRG +LG +P +E H ++ +L+ + + GRAAEE+VF + VT+GA +D
Sbjct: 322 VTIVPRGRALGF--MMPRREDMLHWSRKRLLDQIAVALAGRAAEEIVF--DDVTTGAEND 377
Query: 167 LVQATSIATHMVRE 180
QAT +A M+ E
Sbjct: 378 FRQATELARRMITE 391
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 76.3 bits (186), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 65/106 (61%), Gaps = 12/106 (11%)
Query: 2 ITAYHEGGHAVVAFFTKDSHPLHKVTHPLHKVTIIPRGVSLGHTAYIPEKER-YHVTKSQ 60
ITAYHE GHA+ A F + + +HKVTI+PRG +LG +P +E H ++ +
Sbjct: 289 ITAYHEAGHALAAHFLEHA-------DGVHKVTIVPRGRALGF--MMPRREDMLHWSRKR 339
Query: 61 LMAMMDTMMGGRAAEELVFGAEKVTSGASSDLVQATSIATHMVREF 106
L+ + + GRAAEE+VF + VT+GA +D QAT +A M+ E+
Sbjct: 340 LLDQIAVALAGRAAEEIVF--DDVTTGAENDFRQATELARRMITEW 383
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 5/74 (6%)
Query: 108 VTIIPRGVSLGHTAYIPEKER-YHVTKSQLMAMMDTMMGGRAAEELVFGAEKVTSGASSD 166
VTI+PRG +LG +P +E H ++ +L+ + + GRAAEE+VF + VT+GA +D
Sbjct: 313 VTIVPRGRALGF--MMPRREDMLHWSRKRLLDQIAVALAGRAAEEIVF--DDVTTGAEND 368
Query: 167 LVQATSIATHMVRE 180
QAT +A M+ E
Sbjct: 369 FRQATELARRMITE 382
>pdb|3CE2|A Chain A, Crystal Structure Of Putative Peptidase From Chlamydophila
Abortus
Length = 618
Score = 32.0 bits (71), Expect = 0.19, Method: Composition-based stats.
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 6 HEGGHAVVAFFTKDSHPLHKVTHPL 30
HEGGH++ ++F++ P H +P+
Sbjct: 402 HEGGHSMHSYFSRKHQPFHDAQYPI 426
>pdb|3GUE|A Chain A, Crystal Structure Of Udp-Glucose Phosphorylase From
Trypanosoma Brucei, (Tb10.389.0330)
pdb|3GUE|B Chain B, Crystal Structure Of Udp-Glucose Phosphorylase From
Trypanosoma Brucei, (Tb10.389.0330)
Length = 484
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 54 YHVTKSQLMAMMDTMMGGRAAEEL-------VFGAEKVTSGASSDLVQATSIATHMVREF 106
Y VT+ Q + + + G A +L + G EK+ G L Q TS+ + EF
Sbjct: 389 YQVTEDQRLVLCEERNGKPPAIDLDGEHYKMIDGFEKLVKGGVPSLRQCTSLTVRGLVEF 448
Query: 107 VVTIIPRG 114
+ RG
Sbjct: 449 GADVSVRG 456
>pdb|2QR4|A Chain A, Crystal Structure Of Oligoendopeptidase-F From
Enterococcus Faecium
pdb|2QR4|B Chain B, Crystal Structure Of Oligoendopeptidase-F From
Enterococcus Faecium
Length = 587
Score = 26.6 bits (57), Expect = 7.5, Method: Composition-based stats.
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 1 MITAYHEGGHAVVAFFTKDSHP 22
+ T HE GH+V ++FT+ + P
Sbjct: 364 LFTLVHEXGHSVHSYFTRSNQP 385
>pdb|1Q2L|A Chain A, Crystal Structure Of Pitrilysin
Length = 939
Score = 26.2 bits (56), Expect = 9.7, Method: Composition-based stats.
Identities = 22/108 (20%), Positives = 49/108 (45%), Gaps = 11/108 (10%)
Query: 58 KSQLMAMMDTMMGGRAAEEL-----VFGAEKVTSGASSDLVQATSIATHMVREFVVTIIP 112
++Q+M ++ + G A ++L V G T+ + +V A + + F
Sbjct: 541 RNQVMFALNDYLAGLALDQLSNQASVGGISFSTNANNGLMVNANGYTQRLPQLF------ 594
Query: 113 RGVSLGHTAYIPEKERYHVTKSQLMAMMDTMMGGRAAEELVFGAEKVT 160
+ + G+ +Y +++ KS MMD+ G+A E+ + A+ ++
Sbjct: 595 QALLEGYFSYTATEDQLEQAKSWYNQMMDSAEKGKAFEQAIMPAQMLS 642
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.129 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,855,789
Number of Sequences: 62578
Number of extensions: 169940
Number of successful extensions: 395
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 362
Number of HSP's gapped (non-prelim): 18
length of query: 180
length of database: 14,973,337
effective HSP length: 93
effective length of query: 87
effective length of database: 9,153,583
effective search space: 796361721
effective search space used: 796361721
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)