RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14374
(180 letters)
>gnl|CDD|216502 pfam01434, Peptidase_M41, Peptidase family M41.
Length = 212
Score = 148 bits (377), Expect = 1e-45
Identities = 56/105 (53%), Positives = 75/105 (71%), Gaps = 7/105 (6%)
Query: 2 ITAYHEGGHAVVAFFTKDSHPLHKVTHPLHKVTIIPRGVSLGHTAYIPEKERYHVTKSQL 61
+ AYHE GHA+V + P+HKVT IIPRG +LG+T ++PE+++ TKSQL
Sbjct: 30 LVAYHEAGHALVGLLLPGADPVHKVT-------IIPRGQALGYTQFLPEEDKLLYTKSQL 82
Query: 62 MAMMDTMMGGRAAEELVFGAEKVTSGASSDLVQATSIATHMVREF 106
+A +D +GGRAAEEL+FG ++VT+GAS+DL QAT IA MV EF
Sbjct: 83 LARIDVALGGRAAEELIFGDDEVTTGASNDLEQATKIARQMVTEF 127
Score = 112 bits (283), Expect = 1e-31
Identities = 44/73 (60%), Positives = 59/73 (80%)
Query: 108 VTIIPRGVSLGHTAYIPEKERYHVTKSQLMAMMDTMMGGRAAEELVFGAEKVTSGASSDL 167
VTIIPRG +LG+T ++PE+++ TKSQL+A +D +GGRAAEEL+FG ++VT+GAS+DL
Sbjct: 54 VTIIPRGQALGYTQFLPEEDKLLYTKSQLLARIDVALGGRAAEELIFGDDEVTTGASNDL 113
Query: 168 VQATSIATHMVRE 180
QAT IA MV E
Sbjct: 114 EQATKIARQMVTE 126
>gnl|CDD|233327 TIGR01241, FtsH_fam, ATP-dependent metalloprotease FtsH.
HflB(FtsH) is a pleiotropic protein required for correct
cell division in bacteria. It has ATP-dependent zinc
metalloprotease activity. It was formerly designated
cell division protein FtsH [Cellular processes, Cell
division, Protein fate, Degradation of proteins,
peptides, and glycopeptides].
Length = 495
Score = 140 bits (355), Expect = 9e-40
Identities = 55/105 (52%), Positives = 78/105 (74%), Gaps = 9/105 (8%)
Query: 2 ITAYHEGGHAVVAFFTKDSHPLHKVTHPLHKVTIIPRGVSLGHTAYIPEKERYHVTKSQL 61
+ AYHE GHA+V KD+ P+HKVT IIPRG +LG+T ++PE+++Y TKSQL
Sbjct: 313 LVAYHEAGHALVGLLLKDADPVHKVT-------IIPRGQALGYTQFLPEEDKYLYTKSQL 365
Query: 62 MAMMDTMMGGRAAEELVFGAEKVTSGASSDLVQATSIATHMVREF 106
+A + ++GGRAAEE++FG +VT+GAS+D+ QAT+IA MV E+
Sbjct: 366 LAQIAVLLGGRAAEEIIFG--EVTTGASNDIKQATNIARAMVTEW 408
Score = 105 bits (263), Expect = 8e-27
Identities = 42/73 (57%), Positives = 60/73 (82%), Gaps = 2/73 (2%)
Query: 108 VTIIPRGVSLGHTAYIPEKERYHVTKSQLMAMMDTMMGGRAAEELVFGAEKVTSGASSDL 167
VTIIPRG +LG+T ++PE+++Y TKSQL+A + ++GGRAAEE++FG +VT+GAS+D+
Sbjct: 337 VTIIPRGQALGYTQFLPEEDKYLYTKSQLLAQIAVLLGGRAAEEIIFG--EVTTGASNDI 394
Query: 168 VQATSIATHMVRE 180
QAT+IA MV E
Sbjct: 395 KQATNIARAMVTE 407
>gnl|CDD|223541 COG0465, HflB, ATP-dependent Zn proteases [Posttranslational
modification, protein turnover, chaperones].
Length = 596
Score = 127 bits (322), Expect = 1e-34
Identities = 53/105 (50%), Positives = 77/105 (73%), Gaps = 8/105 (7%)
Query: 2 ITAYHEGGHAVVAFFTKDSHPLHKVTHPLHKVTIIPRGVSLGHTAYIPEKERYHVTKSQL 61
ITAYHE GHA+V D+ P+HKVT IIPRG +LG+T ++PE+++Y ++K +L
Sbjct: 408 ITAYHEAGHALVGLLLPDADPVHKVT-------IIPRGRALGYTLFLPEEDKYLMSKEEL 460
Query: 62 MAMMDTMMGGRAAEELVFGAEKVTSGASSDLVQATSIATHMVREF 106
+ +D ++GGRAAEEL+FG E +T+GAS+DL +AT +A MV E+
Sbjct: 461 LDRIDVLLGGRAAEELIFGYE-ITTGASNDLEKATDLARAMVTEY 504
Score = 98.2 bits (245), Expect = 3e-24
Identities = 39/75 (52%), Positives = 59/75 (78%), Gaps = 1/75 (1%)
Query: 106 FVVTIIPRGVSLGHTAYIPEKERYHVTKSQLMAMMDTMMGGRAAEELVFGAEKVTSGASS 165
VTIIPRG +LG+T ++PE+++Y ++K +L+ +D ++GGRAAEEL+FG E +T+GAS+
Sbjct: 430 HKVTIIPRGRALGYTLFLPEEDKYLMSKEELLDRIDVLLGGRAAEELIFGYE-ITTGASN 488
Query: 166 DLVQATSIATHMVRE 180
DL +AT +A MV E
Sbjct: 489 DLEKATDLARAMVTE 503
>gnl|CDD|214386 CHL00176, ftsH, cell division protein; Validated.
Length = 638
Score = 110 bits (277), Expect = 1e-28
Identities = 48/105 (45%), Positives = 71/105 (67%), Gaps = 7/105 (6%)
Query: 2 ITAYHEGGHAVVAFFTKDSHPLHKVTHPLHKVTIIPRGVSLGHTAYIPEKERYHVTKSQL 61
+ AYHE GHA+V + H P+ KVT+IPRG + G T + PE+++ V++SQ+
Sbjct: 440 LIAYHEVGHAIVGTLLPN-HD------PVQKVTLIPRGQAKGLTWFTPEEDQSLVSRSQI 492
Query: 62 MAMMDTMMGGRAAEELVFGAEKVTSGASSDLVQATSIATHMVREF 106
+A + +GGRAAEE+VFG+ +VT+GAS+DL Q T++A MV F
Sbjct: 493 LARIVGALGGRAAEEVVFGSTEVTTGASNDLQQVTNLARQMVTRF 537
Score = 90.5 bits (225), Expect = 1e-21
Identities = 36/71 (50%), Positives = 55/71 (77%)
Query: 108 VTIIPRGVSLGHTAYIPEKERYHVTKSQLMAMMDTMMGGRAAEELVFGAEKVTSGASSDL 167
VT+IPRG + G T + PE+++ V++SQ++A + +GGRAAEE+VFG+ +VT+GAS+DL
Sbjct: 464 VTLIPRGQAKGLTWFTPEEDQSLVSRSQILARIVGALGGRAAEEVVFGSTEVTTGASNDL 523
Query: 168 VQATSIATHMV 178
Q T++A MV
Sbjct: 524 QQVTNLARQMV 534
>gnl|CDD|182683 PRK10733, hflB, ATP-dependent metalloprotease; Reviewed.
Length = 644
Score = 95.5 bits (237), Expect = 2e-23
Identities = 45/104 (43%), Positives = 70/104 (67%), Gaps = 7/104 (6%)
Query: 3 TAYHEGGHAVVAFFTKDSHPLHKVTHPLHKVTIIPRGVSLGHTAYIPEKERYHVTKSQLM 62
TAYHE GHA++ P H P+HKVTIIPRG +LG T ++PE + ++ +L
Sbjct: 411 TAYHEAGHAIIGRLV----PEHD---PVHKVTIIPRGRALGVTFFLPEGDAISASRQKLE 463
Query: 63 AMMDTMMGGRAAEELVFGAEKVTSGASSDLVQATSIATHMVREF 106
+ + T+ GGR AEE+++G E V++GAS+D+ AT++A +MV ++
Sbjct: 464 SQISTLYGGRLAEEIIYGPEHVSTGASNDIKVATNLARNMVTQW 507
Score = 73.9 bits (181), Expect = 9e-16
Identities = 32/73 (43%), Positives = 53/73 (72%)
Query: 108 VTIIPRGVSLGHTAYIPEKERYHVTKSQLMAMMDTMMGGRAAEELVFGAEKVTSGASSDL 167
VTIIPRG +LG T ++PE + ++ +L + + T+ GGR AEE+++G E V++GAS+D+
Sbjct: 434 VTIIPRGRALGVTFFLPEGDAISASRQKLESQISTLYGGRLAEEIIYGPEHVSTGASNDI 493
Query: 168 VQATSIATHMVRE 180
AT++A +MV +
Sbjct: 494 KVATNLARNMVTQ 506
>gnl|CDD|226036 COG3505, VirD4, Type IV secretory pathway, VirD4 components
[Intracellular trafficking and secretion].
Length = 596
Score = 30.0 bits (68), Expect = 0.63
Identities = 16/95 (16%), Positives = 24/95 (25%), Gaps = 2/95 (2%)
Query: 41 SLGHTAYIPEKERYHVTKSQLMAMMDTMMGGRAAEELVFGAEKVTSGASSDLVQATSIAT 100
SLG Q M+ AA+ L + + +S + I
Sbjct: 42 SLGAPFLDNVFFGIQKYAKQAFLYWGFMLEIYAAKILALKL--IIARSSIFVALYVGIIK 99
Query: 101 HMVREFVVTIIPRGVSLGHTAYIPEKERYHVTKSQ 135
+ R T P G Y + E
Sbjct: 100 WLKRAEAGTAFPTNGIYGSARYATDVEIGKAGLGA 134
>gnl|CDD|222102 pfam13398, Peptidase_M50B, Peptidase M50B-like. This is a family
of bacterial and plant peptidases in the same family as
MEROPS:M50B.
Length = 201
Score = 27.9 bits (63), Expect = 2.2
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 2 ITAYHEGGHAVVAFFT 17
+T +HE GHA+ A T
Sbjct: 24 VTFFHELGHALAALLT 39
>gnl|CDD|239240 cd02930, DCR_FMN, 2,4-dienoyl-CoA reductase (DCR) FMN-binding
domain. DCR in E. coli is an iron-sulfur flavoenzyme
which contains FMN, FAD, and a 4Fe-4S cluster. It is
also a monomer, unlike that of its eukaryotic
counterparts which form homotetramers and lack the
flavin and iron-sulfur cofactors. Metabolism of
unsaturated fatty acids requires auxiliary enzymes in
addition to those used in b-oxidation. After a given
number of cycles through the b-oxidation pathway, those
unsaturated fatty acyl-CoAs with double bonds at
even-numbered carbon positions contain 2-trans, 4-cis
double bonds that can not be modified by enoyl-CoA
hydratase. DCR utilizes NADPH to remove the C4-C5 double
bond. DCR can catalyze the reduction of both natural
fatty acids with cis double bonds, as well as substrates
containing trans double bonds. The reaction is initiated
by hybrid transfer from NADPH to FAD, which in turn
transfers electrons, one at a time, to FMN via the
4Fe-4S cluster. The fully reduced FMN provides a hydrid
ion to the C5 atom of substrate, and Tyr and His are
proposed to form a catalytic dyad that protonates the C4
atom of the substrate and completes the reaction.
Length = 353
Score = 27.6 bits (62), Expect = 3.6
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 11/74 (14%)
Query: 62 MAMMDTMMGGRAAEELVFGAEKVTSGASSDLVQATSIATHMVREFVVTI---IPRGVSLG 118
++M+D + GG EE+V A+ + A +D++ T I H R V TI +PRG
Sbjct: 211 LSMLDLVEGGSTWEEVVALAKAL-EAAGADILN-TGIGWHEAR--VPTIATSVPRGA--- 263
Query: 119 HTAYIPEKERYHVT 132
A+ K + V
Sbjct: 264 -FAWATAKLKRAVD 276
>gnl|CDD|234991 PRK01909, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase;
Validated.
Length = 329
Score = 27.4 bits (61), Expect = 5.1
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 26 VTHPLHKVTIIPRGVSL-GHTAYIPEKER 53
VT PL K TI GV GHT Y+ E+
Sbjct: 112 VTAPLQKSTINDAGVPFTGHTEYLAERTH 140
>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 26.7 bits (60), Expect = 7.1
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 8/64 (12%)
Query: 20 SHPLHKVTHPLHKVTIIPRGVSLGHTAYIPEKERYHVTKSQLMAMMDTMMGGRAAEELVF 79
+H L +V +VT++ RG +G + E T+ +L + M+G +V
Sbjct: 197 THKLKEVMAIADRVTVLRRGKVVGTVDPVAE-----TTEEELAEL---MVGREVVLRVVK 248
Query: 80 GAEK 83
Sbjct: 249 PPST 252
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.129 0.363
Gapped
Lambda K H
0.267 0.0817 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,927,653
Number of extensions: 804962
Number of successful extensions: 598
Number of sequences better than 10.0: 1
Number of HSP's gapped: 589
Number of HSP's successfully gapped: 22
Length of query: 180
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 89
Effective length of database: 6,901,388
Effective search space: 614223532
Effective search space used: 614223532
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.2 bits)