RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14374
(180 letters)
>2di4_A Zinc protease, cell division protein FTSH homolog;
metalloproteinase, hexamer-ring, hydrolase; 2.79A
{Aquifex aeolicus} SCOP: a.269.1.1
Length = 238
Score = 145 bits (368), Expect = 3e-44
Identities = 39/105 (37%), Positives = 63/105 (60%), Gaps = 7/105 (6%)
Query: 2 ITAYHEGGHAVVAFFTKDSHPLHKVTHPLHKVTIIPRGVSLGHTAYIPEKERYHVTKSQL 61
A HE GHA++ + D +HK++IIPRG++LG T +P ++++ K L
Sbjct: 18 KIAIHEAGHALMGLVSDD-------DDKVHKISIIPRGMALGVTQQLPIEDKHIYDKKDL 70
Query: 62 MAMMDTMMGGRAAEELVFGAEKVTSGASSDLVQATSIATHMVREF 106
+ ++GGRAAEE+ FG + +T+GA +DL +AT +A MV +
Sbjct: 71 YNKILVLLGGRAAEEVFFGKDGITTGAENDLQRATDLAYRMVSMW 115
Score = 109 bits (274), Expect = 3e-30
Identities = 30/73 (41%), Positives = 49/73 (67%)
Query: 108 VTIIPRGVSLGHTAYIPEKERYHVTKSQLMAMMDTMMGGRAAEELVFGAEKVTSGASSDL 167
++IIPRG++LG T +P ++++ K L + ++GGRAAEE+ FG + +T+GA +DL
Sbjct: 42 ISIIPRGMALGVTQQLPIEDKHIYDKKDLYNKILVLLGGRAAEEVFFGKDGITTGAENDL 101
Query: 168 VQATSIATHMVRE 180
+AT +A MV
Sbjct: 102 QRATDLAYRMVSM 114
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A
{Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB:
2cea_A* 3kds_E*
Length = 476
Score = 136 bits (345), Expect = 1e-38
Identities = 47/106 (44%), Positives = 75/106 (70%), Gaps = 10/106 (9%)
Query: 2 ITAYHEGGHAVVAFFTKDSHPLHKVTHPLHKVTIIPRGV-SLGHTAYIPEKERYHVTKSQ 60
I AYHE GHAVV+ + P+H+++IIPRG +LG+T ++PE+++Y V++++
Sbjct: 274 IIAYHEAGHAVVSTVVPN-------GEPVHRISIIPRGYKALGYTLHLPEEDKYLVSRNE 326
Query: 61 LMAMMDTMMGGRAAEELVFGAEKVTSGASSDLVQATSIATHMVREF 106
L+ + ++GGRAAEE+VFG VTSGA++D+ +AT IA +MV +
Sbjct: 327 LLDKLTALLGGRAAEEVVFG--DVTSGAANDIERATEIARNMVCQL 370
Score = 100 bits (251), Expect = 2e-25
Identities = 35/74 (47%), Positives = 59/74 (79%), Gaps = 3/74 (4%)
Query: 108 VTIIPRGV-SLGHTAYIPEKERYHVTKSQLMAMMDTMMGGRAAEELVFGAEKVTSGASSD 166
++IIPRG +LG+T ++PE+++Y V++++L+ + ++GGRAAEE+VFG VTSGA++D
Sbjct: 298 ISIIPRGYKALGYTLHLPEEDKYLVSRNELLDKLTALLGGRAAEEVVFG--DVTSGAAND 355
Query: 167 LVQATSIATHMVRE 180
+ +AT IA +MV +
Sbjct: 356 IERATEIARNMVCQ 369
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET:
ADP; 3.90A {Thermus thermophilus}
Length = 499
Score = 132 bits (335), Expect = 3e-37
Identities = 43/105 (40%), Positives = 61/105 (58%), Gaps = 10/105 (9%)
Query: 2 ITAYHEGGHAVVAFFTKDSHPLHKVTHPLHKVTIIPRGVSLGHTAYIPEKERYHVTKSQL 61
ITAYHE GHA+ A F + +HKVTI+PRG +LG E + H ++ +L
Sbjct: 289 ITAYHEAGHALAAHFLEH-------ADGVHKVTIVPRGRALGFMMPRRE-DMLHWSRKRL 340
Query: 62 MAMMDTMMGGRAAEELVFGAEKVTSGASSDLVQATSIATHMVREF 106
+ + + GRAAEE+VF VT+GA +D QAT +A M+ E+
Sbjct: 341 LDQIAVALAGRAAEEIVFD--DVTTGAENDFRQATELARRMITEW 383
Score = 97.3 bits (243), Expect = 3e-24
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 108 VTIIPRGVSLGHTAYIPEKERYHVTKSQLMAMMDTMMGGRAAEELVFGAEKVTSGASSDL 167
VTI+PRG +LG E + H ++ +L+ + + GRAAEE+VF VT+GA +D
Sbjct: 313 VTIVPRGRALGFMMPRRE-DMLHWSRKRLLDQIAVALAGRAAEEIVFD--DVTTGAENDF 369
Query: 168 VQATSIATHMVRE 180
QAT +A M+ E
Sbjct: 370 RQATELARRMITE 382
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.3 bits (75), Expect = 0.044
Identities = 18/120 (15%), Positives = 39/120 (32%), Gaps = 34/120 (28%)
Query: 32 KVTIIPRGVSLGHTAYIPEKERYHVTKSQLMAMMDTMMGGRAAEELVFGAEKVTSGASSD 91
K+ + R + T ++ H++ + + + L+ K D
Sbjct: 267 KILLTTRFKQV--TDFLSAATTTHIS----LDHHSMTLTPDEVKSLL---LKYLDCRPQD 317
Query: 92 LVQATSIATHMVREFVVTIIPRGVSLGHTAYIPEK--------ERY-HVTKSQLMAMMDT 142
L V+T PR +S+ I E + + HV +L ++++
Sbjct: 318 L-----------PREVLTTNPRRLSI-----IAESIRDGLATWDNWKHVNCDKLTTIIES 361
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.8 bits (69), Expect = 0.26
Identities = 31/174 (17%), Positives = 51/174 (29%), Gaps = 64/174 (36%)
Query: 51 KERYHVTKSQLMAMM-DTMMGGRAAEELVFGA--EKVTS----GASSDLVQ--------- 94
+E Y AM+ +T++ G+ E +F E TS L
Sbjct: 1685 RENY-------SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALT 1737
Query: 95 ATSIAT--HMVREFVVTIIPRGV-----SLG------HTA-YIP-E------KER----- 128
A + + +IP SLG A + E R
Sbjct: 1738 LMEKAAFEDLKSKG---LIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQ 1794
Query: 129 YHVTKSQL----MAMM----DTMMGGRAAEELVFGAEKVTSGASSDLVQATSIA 174
V + +L M+ + + E L + E+V + LV+ I
Sbjct: 1795 VAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERV-GKRTGWLVE---IV 1844
Score = 29.2 bits (65), Expect = 0.74
Identities = 37/208 (17%), Positives = 69/208 (33%), Gaps = 66/208 (31%)
Query: 10 HAVVAFFTKDSHPLHKVTHPLHKVTIIPRGVSLGHTAYIPEKERYHVTKSQLMAMMDTMM 69
HA+ A +++ T + +I ++ A P ++ + S L
Sbjct: 102 HALAAKLLQEND-----TTLVKTKELIKNYITARIMAKRPFDKK---SNSALF------- 146
Query: 70 GGRAAEE------LVFGAEKVTSGASSD----LVQATSIATHMVREFVVT---------- 109
RA E +FG + G + D L +V + +
Sbjct: 147 --RAVGEGNAQLVAIFGGQ----GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIR 200
Query: 110 -------IIPRGVS----LGHTAYIPEKERY--HVTKS-------QLMAMMDT--MMGGR 147
+ +G++ L + + P+K+ Y + S QL + T ++G
Sbjct: 201 TTLDAEKVFTQGLNILEWLENPSNTPDKD-YLLSIPISCPLIGVIQLAHYVVTAKLLGFT 259
Query: 148 AAEELVFGAEKVTSGASSDLVQATSIAT 175
E + K +G S LV A +IA
Sbjct: 260 PGE--LRSYLKGATGHSQGLVTAVAIAE 285
Score = 28.1 bits (62), Expect = 2.1
Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 19/112 (16%)
Query: 5 YHEGGHAVVAFFTKDSHPLHK-VTHPLHKVTIIPRGVS----LGHTAYIPEKERY--HVT 57
Y V + L + + L + +G++ L + + P+K+ Y +
Sbjct: 177 YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD-YLLSIP 235
Query: 58 KS-------QLMAMMDT--MMGGRAAEELVFGAEKVTSGASSDLVQATSIAT 100
S QL + T ++G E + K +G S LV A +IA
Sbjct: 236 ISCPLIGVIQLAHYVVTAKLLGFTPGE--LRSYLKGATGHSQGLVTAVAIAE 285
>2f2h_A Putative family 31 glucosidase YICI; BETA8alpha8 barrel, hydrolase;
HET: MPO XTG; 1.95A {Escherichia coli} SCOP: b.150.1.1
b.30.5.11 b.71.1.4 c.1.8.13 PDB: 1xsj_A 1xsi_A 1xsk_A*
1we5_A*
Length = 773
Score = 28.1 bits (63), Expect = 2.0
Identities = 7/50 (14%), Positives = 14/50 (28%), Gaps = 10/50 (20%)
Query: 15 FFTKDSHP---LHKVTHPLHKV-------TIIPRGVSLGHTAYIPEKERY 54
+ D HK H + T++ G + Y+ +
Sbjct: 638 LWHNDELDGSRWHKQQHGFLSLPVYVRDNTLLALGNNDQRPDYVWHEGTA 687
>3aj7_A Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydrolase; 1.30A
{Saccharomyces cerevisiae} PDB: 3a4a_A* 3a47_A 3axi_A*
3axh_A*
Length = 589
Score = 27.9 bits (63), Expect = 2.0
Identities = 5/35 (14%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Query: 37 PRGVSLGHTAYIPEKERYHVTKSQLMAMMDTMMGG 71
PR ++ + + + V +L++++ + + G
Sbjct: 354 PRSIT----RFGDDSPKNRVISGKLLSVLLSALTG 384
Score = 27.9 bits (63), Expect = 2.0
Identities = 5/35 (14%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Query: 112 PRGVSLGHTAYIPEKERYHVTKSQLMAMMDTMMGG 146
PR ++ + + + V +L++++ + + G
Sbjct: 354 PRSIT----RFGDDSPKNRVISGKLLSVLLSALTG 384
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD
cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP:
a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A*
Length = 659
Score = 27.6 bits (61), Expect = 2.8
Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 9/65 (13%)
Query: 36 IPRGVSLGHTAYIPEKERYHVTKSQLMAMMDTMMGGRAAEELVFGAEKVTSGASSDLVQA 95
IPR L + + + Y + + TM+ R + + AS+ L +A
Sbjct: 249 IPRDQMLMRLSKVTREGEYVPSDVPKQLVYGTMVYVRQT---------IVADASNALSRA 299
Query: 96 TSIAT 100
IAT
Sbjct: 300 VCIAT 304
Score = 27.6 bits (61), Expect = 2.8
Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 9/65 (13%)
Query: 111 IPRGVSLGHTAYIPEKERYHVTKSQLMAMMDTMMGGRAAEELVFGAEKVTSGASSDLVQA 170
IPR L + + + Y + + TM+ R + + AS+ L +A
Sbjct: 249 IPRDQMLMRLSKVTREGEYVPSDVPKQLVYGTMVYVRQT---------IVADASNALSRA 299
Query: 171 TSIAT 175
IAT
Sbjct: 300 VCIAT 304
>1m53_A Isomaltulose synthase; klebsiella SP. LX3, sucrose isomerization,
isomerase; 2.20A {Klebsiella SP} SCOP: b.71.1.1 c.1.8.1
Length = 570
Score = 27.5 bits (62), Expect = 3.0
Identities = 5/35 (14%), Positives = 14/35 (40%), Gaps = 4/35 (11%)
Query: 37 PRGVSLGHTAYIPEKERYHVTKSQLMAMMDTMMGG 71
PR VS + ++ ++ ++ +A +
Sbjct: 343 PRAVS----HFGDDRPQWREASAKALATITLTQRA 373
Score = 27.5 bits (62), Expect = 3.0
Identities = 5/35 (14%), Positives = 14/35 (40%), Gaps = 4/35 (11%)
Query: 112 PRGVSLGHTAYIPEKERYHVTKSQLMAMMDTMMGG 146
PR VS + ++ ++ ++ +A +
Sbjct: 343 PRAVS----HFGDDRPQWREASAKALATITLTQRA 373
>1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family,
(beta/alpha)8 barrel; 1.60A {Pseudomonas mesoacidophila}
PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A 2pwe_A* 2pwf_A*
3gbe_A* 3gbd_A*
Length = 557
Score = 27.1 bits (61), Expect = 4.2
Identities = 6/35 (17%), Positives = 15/35 (42%), Gaps = 4/35 (11%)
Query: 37 PRGVSLGHTAYIPEKERYHVTKSQLMAMMDTMMGG 71
PR VS + ++ ++ ++ +A + G
Sbjct: 329 PRAVS----HFGDDRPQWREASAKALATVTLTQRG 359
Score = 27.1 bits (61), Expect = 4.2
Identities = 6/35 (17%), Positives = 15/35 (42%), Gaps = 4/35 (11%)
Query: 112 PRGVSLGHTAYIPEKERYHVTKSQLMAMMDTMMGG 146
PR VS + ++ ++ ++ +A + G
Sbjct: 329 PRAVS----HFGDDRPQWREASAKALATVTLTQRG 359
>3ahn_A Oligopeptidase, PZ peptidase A; hydrolase, hydrolase-hydrolase
inhibitor complex; HET: 3A1; 1.80A {Geobacillus SP} PDB:
3ahm_A* 3aho_A* 2h1n_A 2h1j_A
Length = 564
Score = 26.2 bits (58), Expect = 7.0
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 6 HEGGHAVVAFFTKDSHPLHKVTHPL 30
HE GHA + ++ L
Sbjct: 356 HEAGHAFQVYESRHYEIPEYNWPTL 380
>3sks_A Putative oligoendopeptidase F; structural genomics, center for
structural genomics of infec diseases, csgid, protease,
hydrolase; 2.05A {Bacillus anthracis}
Length = 567
Score = 26.2 bits (58), Expect = 7.9
Identities = 5/25 (20%), Positives = 8/25 (32%)
Query: 6 HEGGHAVVAFFTKDSHPLHKVTHPL 30
HE GHA + ++
Sbjct: 359 HEAGHAFQVYESRKFEIPEYNWPTY 383
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.129 0.363
Gapped
Lambda K H
0.267 0.0771 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,714,786
Number of extensions: 161227
Number of successful extensions: 332
Number of sequences better than 10.0: 1
Number of HSP's gapped: 321
Number of HSP's successfully gapped: 24
Length of query: 180
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 92
Effective length of database: 4,244,745
Effective search space: 390516540
Effective search space used: 390516540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.5 bits)