RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14374
         (180 letters)



>d2di4a1 a.269.1.1 (A:406-607) Cell division protein FtsH,
           C-terminal domain {Aquifex aeolicus [TaxId: 63363]}
          Length = 202

 Score = 90.6 bits (224), Expect = 8e-24
 Identities = 39/105 (37%), Positives = 63/105 (60%), Gaps = 7/105 (6%)

Query: 2   ITAYHEGGHAVVAFFTKDSHPLHKVTHPLHKVTIIPRGVSLGHTAYIPEKERYHVTKSQL 61
             A HE GHA++   + D          +HK++IIPRG++LG T  +P ++++   K  L
Sbjct: 9   KIAIHEAGHALMGLVSDD-------DDKVHKISIIPRGMALGVTQQLPIEDKHIYDKKDL 61

Query: 62  MAMMDTMMGGRAAEELVFGAEKVTSGASSDLVQATSIATHMVREF 106
              +  ++GGRAAEE+ FG + +T+GA +DL +AT +A  MV  +
Sbjct: 62  YNKILVLLGGRAAEEVFFGKDGITTGAENDLQRATDLAYRMVSMW 106



 Score = 61.0 bits (147), Expect = 1e-12
 Identities = 30/73 (41%), Positives = 49/73 (67%)

Query: 108 VTIIPRGVSLGHTAYIPEKERYHVTKSQLMAMMDTMMGGRAAEELVFGAEKVTSGASSDL 167
           ++IIPRG++LG T  +P ++++   K  L   +  ++GGRAAEE+ FG + +T+GA +DL
Sbjct: 33  ISIIPRGMALGVTQQLPIEDKHIYDKKDLYNKILVLLGGRAAEEVFFGKDGITTGAENDL 92

Query: 168 VQATSIATHMVRE 180
            +AT +A  MV  
Sbjct: 93  QRATDLAYRMVSM 105


>d2ce7a1 a.269.1.1 (A:411-603) Cell division protein FtsH,
           C-terminal domain {Thermotoga maritima [TaxId: 2336]}
          Length = 193

 Score = 85.5 bits (211), Expect = 9e-22
 Identities = 53/153 (34%), Positives = 89/153 (58%), Gaps = 15/153 (9%)

Query: 2   ITAYHEGGHAVVAFFTKDSHPLHKVTHPLHKVTIIPR-GVSLGHTAYIPEKERYHVTKSQ 60
           I AYHE GHAVV+    +         P+H+++IIPR   +LG+T ++PE+++Y V++++
Sbjct: 9   IIAYHEAGHAVVSTVVPNG-------EPVHRISIIPRGYKALGYTLHLPEEDKYLVSRNE 61

Query: 61  LMAMMDTMMGGRAAEELVFGAEKVTSGASSDLVQATSIATHMVREFVVTIIPRGVSLGHT 120
           L+  +  ++GGRAAEE+VFG   VTSGA++D+ +AT IA +MV +  ++       LG  
Sbjct: 62  LLDKLTALLGGRAAEEVVFG--DVTSGAANDIERATEIARNMVCQLGMSE-----ELGPL 114

Query: 121 AYIPEKERYHVTKSQLMAMMDTMMGGRAAEELV 153
           A+  E++   + K        +       +E V
Sbjct: 115 AWGKEEQEVFLGKEITRLRNYSEEVASKIDEEV 147



 Score = 57.0 bits (137), Expect = 4e-11
 Identities = 34/74 (45%), Positives = 58/74 (78%), Gaps = 3/74 (4%)

Query: 108 VTIIPR-GVSLGHTAYIPEKERYHVTKSQLMAMMDTMMGGRAAEELVFGAEKVTSGASSD 166
           ++IIPR   +LG+T ++PE+++Y V++++L+  +  ++GGRAAEE+VFG   VTSGA++D
Sbjct: 33  ISIIPRGYKALGYTLHLPEEDKYLVSRNELLDKLTALLGGRAAEEVVFG--DVTSGAAND 90

Query: 167 LVQATSIATHMVRE 180
           + +AT IA +MV +
Sbjct: 91  IERATEIARNMVCQ 104


>d1xtta1 c.61.1.1 (A:2-216) Uracil PRTase, Upp {Sulfolobus
          solfataricus [TaxId: 2287]}
          Length = 215

 Score = 25.3 bits (55), Expect = 4.1
 Identities = 5/17 (29%), Positives = 10/17 (58%), Gaps = 2/17 (11%)

Query: 22 PLHKVTHPL--HKVTII 36
          PL+ +  P+  H +T +
Sbjct: 1  PLYVIDKPITLHILTQL 17


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.129    0.363 

Gapped
Lambda     K      H
   0.267   0.0489    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 618,769
Number of extensions: 25674
Number of successful extensions: 67
Number of sequences better than 10.0: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 11
Length of query: 180
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 100
Effective length of database: 1,309,196
Effective search space: 130919600
Effective search space used: 130919600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.6 bits)