BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14375
(206 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|91082085|ref|XP_966894.1| PREDICTED: similar to DNA-directed RNA polymerase II 16 kDa
polypeptide [Tribolium castaneum]
gi|270008323|gb|EFA04771.1| hypothetical protein TcasGA2_TC030678 [Tribolium castaneum]
Length = 138
Score = 229 bits (583), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 110/138 (79%), Positives = 125/138 (90%)
Query: 69 MTHVLDQVVEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKT 128
M + + EEDA DLQFPKEFENAETLLISEVHMLL+HRK QNE+AE+EQEFS+VF KT
Sbjct: 1 MANANTDLTEEDAADLQFPKEFENAETLLISEVHMLLEHRKAQNESAEDEQEFSDVFMKT 60
Query: 129 LTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEE 188
LTYT+RFRKFKN+ETI++VRNLL QKKLHKFELAAIANLCPET EEAK+LIPSLE RFE+
Sbjct: 61 LTYTDRFRKFKNKETISAVRNLLMQKKLHKFELAAIANLCPETTEEAKSLIPSLEGRFED 120
Query: 189 EELRQILDDIQTKRSLQY 206
EEL+ +LDDIQTKRS+QY
Sbjct: 121 EELQAVLDDIQTKRSIQY 138
>gi|357619360|gb|EHJ71970.1| putative histone acetyltransferase [Danaus plexippus]
Length = 138
Score = 226 bits (577), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 112/138 (81%), Positives = 124/138 (89%)
Query: 69 MTHVLDQVVEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKT 128
M+ L VVEEDA DLQFPKEFENAETLLISEV MLL+HRK QNE+AEEEQEFSEVF KT
Sbjct: 1 MSGPLQDVVEEDAADLQFPKEFENAETLLISEVDMLLEHRKAQNESAEEEQEFSEVFMKT 60
Query: 129 LTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEE 188
LTYT F+KFKN+ETIT+VRNLL KKLHKFE+A++ANLCPETPEEAKALIPSLE RFE+
Sbjct: 61 LTYTNMFKKFKNKETITAVRNLLQSKKLHKFEVASLANLCPETPEEAKALIPSLEGRFED 120
Query: 189 EELRQILDDIQTKRSLQY 206
EELR +LDDIQTKRS+QY
Sbjct: 121 EELRILLDDIQTKRSIQY 138
>gi|390178627|ref|XP_003736694.1| GA30251 [Drosophila pseudoobscura pseudoobscura]
gi|388859523|gb|EIM52767.1| GA30251 [Drosophila pseudoobscura pseudoobscura]
Length = 139
Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 109/131 (83%), Positives = 118/131 (90%)
Query: 76 VVEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERF 135
+V+EDA DLQFPKEFENAETLLISEVHMLL HRK QNE+A+EEQEFSEVF KT YT+ F
Sbjct: 9 MVDEDAADLQFPKEFENAETLLISEVHMLLDHRKRQNESADEEQEFSEVFMKTYAYTDSF 68
Query: 136 RKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQIL 195
RKFKN+ETI SVR+LL QKKLHKFELAA+ NLCPE PEEAKALIPSLE RFE+EELRQIL
Sbjct: 69 RKFKNKETIMSVRSLLMQKKLHKFELAALGNLCPEAPEEAKALIPSLEGRFEDEELRQIL 128
Query: 196 DDIQTKRSLQY 206
DDI TKRSLQY
Sbjct: 129 DDIGTKRSLQY 139
>gi|281362019|ref|NP_001014633.2| Rpb4 [Drosophila melanogaster]
gi|143459115|sp|Q9VEA5.5|RPB4_DROME RecName: Full=DNA-directed RNA polymerase II 16 kDa polypeptide;
AltName: Full=RNA polymerase II accessory factor rpb4
gi|66571194|gb|AAY51562.1| IP01323p [Drosophila melanogaster]
gi|66772825|gb|AAY55724.1| IP02337p [Drosophila melanogaster]
gi|66772827|gb|AAY55725.1| IP02340p [Drosophila melanogaster]
gi|220943406|gb|ACL84246.1| Rpb4-PF [synthetic construct]
gi|220955702|gb|ACL90394.1| Rpb4-PF [synthetic construct]
gi|272477037|gb|AAF55522.5| Rpb4 [Drosophila melanogaster]
Length = 139
Score = 222 bits (566), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 108/131 (82%), Positives = 117/131 (89%)
Query: 76 VVEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERF 135
+V+EDA DLQFPKEFENAETLLISEVHMLL HRK QNE+A+EEQEFSEVF KT YT+ F
Sbjct: 9 MVDEDAADLQFPKEFENAETLLISEVHMLLDHRKRQNESADEEQEFSEVFMKTYAYTDSF 68
Query: 136 RKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQIL 195
RKFKN+ETI S R+LL QKKLHKFELAA+ NLCPE PEEAKALIPSLE RFE+EELRQIL
Sbjct: 69 RKFKNKETIMSARSLLMQKKLHKFELAALGNLCPEAPEEAKALIPSLEGRFEDEELRQIL 128
Query: 196 DDIQTKRSLQY 206
DDI TKRSLQY
Sbjct: 129 DDIGTKRSLQY 139
>gi|27263229|gb|AAN88031.1| RNA polymerase II accessory factor rpb4 [Drosophila melanogaster]
gi|27263231|gb|AAN88032.1| RNA polymerase II accessory factor rpb4 [Drosophila melanogaster]
Length = 139
Score = 219 bits (557), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 106/131 (80%), Positives = 116/131 (88%)
Query: 76 VVEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERF 135
+V+EDA DLQFPKEFENAETLLISEVHMLL HRK QNE+A+EEQEFSEVF KT YT+ F
Sbjct: 9 MVDEDAADLQFPKEFENAETLLISEVHMLLDHRKRQNESADEEQEFSEVFMKTYAYTDSF 68
Query: 136 RKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQIL 195
RKFKN+ETI S R+LL QKKLHKFELAA+ NLCPE PEEAKALIPSLE RFE+EE R+IL
Sbjct: 69 RKFKNKETIMSARSLLMQKKLHKFELAALGNLCPEAPEEAKALIPSLEGRFEDEEAREIL 128
Query: 196 DDIQTKRSLQY 206
DDI TKRSLQY
Sbjct: 129 DDIGTKRSLQY 139
>gi|389609397|dbj|BAM18310.1| histone acetyltransferase rpb4 [Papilio xuthus]
Length = 151
Score = 218 bits (555), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 108/136 (79%), Positives = 121/136 (88%)
Query: 69 MTHVLDQVVEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKT 128
M+ + VVEEDA DLQFPKEFENAETLLISEV MLL+HRK QNE+AEEEQEFSEVF KT
Sbjct: 1 MSCPIQDVVEEDAADLQFPKEFENAETLLISEVDMLLEHRKAQNESAEEEQEFSEVFMKT 60
Query: 129 LTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEE 188
LTYT F+KFKN+ETI +VRNLL KKLHKFE+A++ANLCPETPEEAKALIPSLE RFE+
Sbjct: 61 LTYTNMFKKFKNKETIAAVRNLLQSKKLHKFEVASLANLCPETPEEAKALIPSLEGRFED 120
Query: 189 EELRQILDDIQTKRSL 204
EELR +LDDIQTKRS+
Sbjct: 121 EELRILLDDIQTKRSI 136
>gi|321476639|gb|EFX87599.1| hypothetical protein DAPPUDRAFT_306425 [Daphnia pulex]
Length = 137
Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 105/132 (79%), Positives = 119/132 (90%)
Query: 75 QVVEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTER 134
++ +EDA LQFPKEFENAETLLISEVHMLL HRK QNE+AE+EQE SEVF KTL YT+R
Sbjct: 6 EISDEDAAVLQFPKEFENAETLLISEVHMLLDHRKLQNESAEDEQELSEVFMKTLNYTQR 65
Query: 135 FRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQI 194
F KFKNRETI ++R+LL QKKLHKFELAA+ANLCPE+PEEAK+LIPSLE RFE+EELRQI
Sbjct: 66 FSKFKNRETIAAIRSLLMQKKLHKFELAALANLCPESPEEAKSLIPSLEGRFEDEELRQI 125
Query: 195 LDDIQTKRSLQY 206
L+DIQTKRS QY
Sbjct: 126 LEDIQTKRSFQY 137
>gi|225706322|gb|ACO09007.1| DNA-directed RNA polymerase II 16 kDa polypeptide [Osmerus mordax]
Length = 144
Score = 216 bits (550), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 111/145 (76%), Positives = 120/145 (82%), Gaps = 2/145 (1%)
Query: 62 VSIGYIIMTHVLDQVVEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEF 121
S G THV D VEEDA L FPKEFENAETLL SEVHMLL+HRK QNE+AE+EQE
Sbjct: 2 ASGGGSTTTHVGD--VEEDASQLLFPKEFENAETLLNSEVHMLLEHRKQQNESAEDEQEL 59
Query: 122 SEVFQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPS 181
SEVF KTL YT RF +FKNRETI SVR+LL QKKLHKFELA++ANLCPE EEAKALIPS
Sbjct: 60 SEVFMKTLNYTARFSRFKNRETIASVRSLLLQKKLHKFELASLANLCPEAAEEAKALIPS 119
Query: 182 LECRFEEEELRQILDDIQTKRSLQY 206
LE RFE+EEL+QILDDIQTKRS QY
Sbjct: 120 LEGRFEDEELQQILDDIQTKRSFQY 144
>gi|427786429|gb|JAA58666.1| Putative dna-directed rna polymerase ii [Rhipicephalus pulchellus]
Length = 144
Score = 215 bits (548), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 106/135 (78%), Positives = 121/135 (89%), Gaps = 1/135 (0%)
Query: 72 VLDQVVEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTY 131
VLDQV EEDA +LQFPKEFENAETLLISEVHMLL+HRK QNE+AEEEQE SEVF KTL Y
Sbjct: 11 VLDQV-EEDASELQFPKEFENAETLLISEVHMLLEHRKQQNESAEEEQELSEVFMKTLGY 69
Query: 132 TERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEEL 191
+RF +FKNRETIT+VR LL QKKLH+FELA +ANLCP+ PEEA+AL+PSLE RFE+++L
Sbjct: 70 CQRFSRFKNRETITAVRQLLAQKKLHRFELAQLANLCPDNPEEARALVPSLEGRFEDDQL 129
Query: 192 RQILDDIQTKRSLQY 206
RQILDDIQT+RS QY
Sbjct: 130 RQILDDIQTQRSFQY 144
>gi|346469951|gb|AEO34820.1| hypothetical protein [Amblyomma maculatum]
Length = 144
Score = 215 bits (548), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 105/135 (77%), Positives = 121/135 (89%), Gaps = 1/135 (0%)
Query: 72 VLDQVVEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTY 131
VLDQV EEDA +LQFPKEFENAETLLISEVHMLL+HRK QNE+AEEEQE SEVF KTL Y
Sbjct: 11 VLDQV-EEDASELQFPKEFENAETLLISEVHMLLEHRKQQNESAEEEQELSEVFMKTLGY 69
Query: 132 TERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEEL 191
+RF +FKNRETI++VR LL QKKLH+FELA +ANLCP+ PEEA+AL+PSLE RFE+++L
Sbjct: 70 CQRFSRFKNRETISAVRQLLAQKKLHRFELAQLANLCPDNPEEARALVPSLEGRFEDDQL 129
Query: 192 RQILDDIQTKRSLQY 206
RQILDDIQT+RS QY
Sbjct: 130 RQILDDIQTQRSFQY 144
>gi|346469949|gb|AEO34819.1| hypothetical protein [Amblyomma maculatum]
Length = 144
Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 105/135 (77%), Positives = 121/135 (89%), Gaps = 1/135 (0%)
Query: 72 VLDQVVEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTY 131
VLDQV EEDA +LQFPKEFENAETLLISEVHMLL+HRK QNE+AEEEQE SEVF KTL Y
Sbjct: 11 VLDQV-EEDASELQFPKEFENAETLLISEVHMLLEHRKQQNESAEEEQELSEVFMKTLGY 69
Query: 132 TERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEEL 191
+RF +FKNRETI++VR LL QKKLH+FELA +ANLCP+ PEEA+AL+PSLE RFE+++L
Sbjct: 70 CQRFSRFKNRETISAVRQLLAQKKLHRFELAQLANLCPDNPEEARALVPSLEGRFEDDQL 129
Query: 192 RQILDDIQTKRSLQY 206
RQILDDIQT+RS QY
Sbjct: 130 RQILDDIQTQRSFQY 144
>gi|432927321|ref|XP_004080968.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Oryzias latipes]
Length = 144
Score = 214 bits (544), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 107/145 (73%), Positives = 121/145 (83%), Gaps = 2/145 (1%)
Query: 62 VSIGYIIMTHVLDQVVEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEF 121
+ G + +HV D VEEDA L FPKEFEN+ETLL SEVHMLL+HRK QNE+AE+EQE
Sbjct: 2 TAAGSSVSSHVGD--VEEDASQLLFPKEFENSETLLNSEVHMLLEHRKQQNESAEDEQEL 59
Query: 122 SEVFQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPS 181
SEVF KTL YT RF +FKNRETIT+VR+LL QKKLHKFELA++ANLCPE EEAKAL PS
Sbjct: 60 SEVFMKTLNYTARFSRFKNRETITAVRSLLLQKKLHKFELASLANLCPEAAEEAKALTPS 119
Query: 182 LECRFEEEELRQILDDIQTKRSLQY 206
LE RFE+EEL+QILDDIQTKRS QY
Sbjct: 120 LEGRFEDEELQQILDDIQTKRSFQY 144
>gi|50539702|ref|NP_001002317.1| DNA-directed RNA polymerase II subunit RPB4 [Danio rerio]
gi|49619057|gb|AAT68113.1| RNA polymerase II subunit D [Danio rerio]
gi|66267586|gb|AAH95261.1| Polymerase (RNA) II (DNA directed) polypeptide D [Danio rerio]
gi|182888836|gb|AAI64278.1| Polr2d protein [Danio rerio]
Length = 141
Score = 212 bits (540), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 108/137 (78%), Positives = 117/137 (85%), Gaps = 2/137 (1%)
Query: 70 THVLDQVVEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTL 129
T V D VEEDA L FPKEFENAETLL SEVHMLL+HRK QNE+AE+EQE SEVF KTL
Sbjct: 7 TQVGD--VEEDASQLMFPKEFENAETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTL 64
Query: 130 TYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEE 189
YT RF +FKNRETI SVR+LL QKKLHKFELA++ANLCPE EEAKALIPSLE RFE+E
Sbjct: 65 NYTARFSRFKNRETIASVRSLLLQKKLHKFELASLANLCPEAAEEAKALIPSLEGRFEDE 124
Query: 190 ELRQILDDIQTKRSLQY 206
EL+QILDDIQTKRS QY
Sbjct: 125 ELQQILDDIQTKRSFQY 141
>gi|348540766|ref|XP_003457858.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Oreochromis niloticus]
Length = 144
Score = 212 bits (540), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 108/136 (79%), Positives = 118/136 (86%), Gaps = 2/136 (1%)
Query: 71 HVLDQVVEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLT 130
HV D VEEDA L FPKEFENAETLL SEVHMLL+HRK QNE+AE+EQE SEVF KTL
Sbjct: 11 HVGD--VEEDASQLLFPKEFENAETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLN 68
Query: 131 YTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEE 190
YT RF +FKNRETIT+VR+LL QKKLHKFELA++ANLCPE EEAKALIPSLE RFE+EE
Sbjct: 69 YTARFSRFKNRETITAVRSLLLQKKLHKFELASLANLCPEAAEEAKALIPSLEGRFEDEE 128
Query: 191 LRQILDDIQTKRSLQY 206
L+QILDDIQTKRS QY
Sbjct: 129 LQQILDDIQTKRSFQY 144
>gi|260841580|ref|XP_002613990.1| hypothetical protein BRAFLDRAFT_113736 [Branchiostoma floridae]
gi|229299380|gb|EEN69999.1| hypothetical protein BRAFLDRAFT_113736 [Branchiostoma floridae]
Length = 142
Score = 212 bits (540), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 104/130 (80%), Positives = 116/130 (89%)
Query: 77 VEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFR 136
+EEDA LQFPKEFENAETLL SEV+MLL+HRK QNE+AEEEQE SEVF KTL YT RF
Sbjct: 13 IEEDAAQLQFPKEFENAETLLNSEVNMLLEHRKQQNESAEEEQELSEVFMKTLGYTSRFS 72
Query: 137 KFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
+FKNRETI +VR+LL QKKLHKFELAA+ANLCPE+ EEAK+LIPSLE RFE+EEL+QILD
Sbjct: 73 RFKNRETIAAVRSLLMQKKLHKFELAALANLCPESAEEAKSLIPSLEGRFEDEELQQILD 132
Query: 197 DIQTKRSLQY 206
DIQTKRS QY
Sbjct: 133 DIQTKRSFQY 142
>gi|317593877|ref|NP_001187972.1| DNA-directed RNA polymerase II subunit rpb4 [Ictalurus punctatus]
gi|308322187|gb|ADO28231.1| DNA-directed RNA polymerase II subunit rpb4 [Ictalurus furcatus]
gi|308324485|gb|ADO29377.1| DNA-directed RNA polymerase II subunit rpb4 [Ictalurus punctatus]
Length = 141
Score = 212 bits (540), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 107/137 (78%), Positives = 118/137 (86%), Gaps = 2/137 (1%)
Query: 70 THVLDQVVEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTL 129
T+V D +EEDA L FPKEFENAETLL SEVHMLL+HRK QNE+AE+EQE SEVF KTL
Sbjct: 7 TNVGD--IEEDASQLSFPKEFENAETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTL 64
Query: 130 TYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEE 189
YT RF +FKNRETI SVR+LL QKKLHKFELA++ANLCPE EEAKALIPSLE RFE+E
Sbjct: 65 NYTARFSRFKNRETIASVRSLLLQKKLHKFELASLANLCPEAAEEAKALIPSLEGRFEDE 124
Query: 190 ELRQILDDIQTKRSLQY 206
EL+QILDDIQTKRS QY
Sbjct: 125 ELQQILDDIQTKRSFQY 141
>gi|225716064|gb|ACO13878.1| DNA-directed RNA polymerase II subunit RPB4 [Esox lucius]
Length = 143
Score = 211 bits (537), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 105/130 (80%), Positives = 114/130 (87%)
Query: 77 VEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFR 136
VEEDA L FPKEFENAETLL SEVHMLL+HRK QNE+AE+EQE SEVF KTL YT RF
Sbjct: 14 VEEDASQLLFPKEFENAETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLNYTARFS 73
Query: 137 KFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
+FKNRETI SVR+LL QKKLHKFELA++ANLCPE EEAKALIPSLE RFE+EEL+QILD
Sbjct: 74 RFKNRETIGSVRSLLLQKKLHKFELASLANLCPEAAEEAKALIPSLEGRFEDEELQQILD 133
Query: 197 DIQTKRSLQY 206
DIQTKRS QY
Sbjct: 134 DIQTKRSFQY 143
>gi|241727036|ref|XP_002413767.1| DNA-directed RNA polymerase II, putative [Ixodes scapularis]
gi|215507583|gb|EEC17075.1| DNA-directed RNA polymerase II, putative [Ixodes scapularis]
gi|442756991|gb|JAA70654.1| Putative dna-directed rna polymerase ii [Ixodes ricinus]
Length = 144
Score = 211 bits (537), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 105/135 (77%), Positives = 119/135 (88%), Gaps = 1/135 (0%)
Query: 72 VLDQVVEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTY 131
VLDQV EEDA +QFPKEFENAE LLISEV+MLL+HRK QNE+AEEEQE SEVF KTL+Y
Sbjct: 11 VLDQV-EEDASAMQFPKEFENAECLLISEVNMLLEHRKQQNESAEEEQELSEVFMKTLSY 69
Query: 132 TERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEEL 191
+RF +FKNRETIT+VRNLL QKKLHKFE A +ANLCP+ PEEAKALIPSLE FE+++L
Sbjct: 70 CQRFSRFKNRETITAVRNLLKQKKLHKFEAAQLANLCPDNPEEAKALIPSLEGMFEDDDL 129
Query: 192 RQILDDIQTKRSLQY 206
RQILDDIQT+RS QY
Sbjct: 130 RQILDDIQTQRSFQY 144
>gi|238231374|ref|NP_001154121.1| DNA-directed RNA polymerase II 16 kDa polypeptide [Oncorhynchus
mykiss]
gi|225704188|gb|ACO07940.1| DNA-directed RNA polymerase II 16 kDa polypeptide [Oncorhynchus
mykiss]
Length = 143
Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 103/130 (79%), Positives = 114/130 (87%)
Query: 77 VEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFR 136
+EEDA L FPKEFENAETLL SEVHMLL+HRK QNE+AE+EQE SEVF KTL YT RF
Sbjct: 14 IEEDASQLLFPKEFENAETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLNYTARFS 73
Query: 137 KFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
+FKNRETI SVR+LL QKKLHKFELA++ANLCPE EEAKALIPS+E RFE+EEL+QILD
Sbjct: 74 RFKNRETIASVRSLLLQKKLHKFELASLANLCPEAAEEAKALIPSVEGRFEDEELQQILD 133
Query: 197 DIQTKRSLQY 206
DIQTKRS QY
Sbjct: 134 DIQTKRSFQY 143
>gi|405964873|gb|EKC30315.1| DNA-directed RNA polymerase II subunit RPB4 [Crassostrea gigas]
Length = 145
Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 101/129 (78%), Positives = 117/129 (90%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRK 137
EEDA +LQFPKEFENAETLLISEV MLL+HRKTQNE+AEEEQE SEVF KTL YT RF K
Sbjct: 17 EEDAAELQFPKEFENAETLLISEVQMLLEHRKTQNESAEEEQELSEVFMKTLNYTSRFSK 76
Query: 138 FKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDD 197
FKNRETI+++R++L QKKLHKFELAA+ANLCP+ EEAK+LIPSLE RFE+EEL+Q+L+D
Sbjct: 77 FKNRETISAIRSVLMQKKLHKFELAALANLCPDNAEEAKSLIPSLEGRFEDEELQQLLED 136
Query: 198 IQTKRSLQY 206
I+TKRS QY
Sbjct: 137 IKTKRSFQY 145
>gi|226443030|ref|NP_001140015.1| DNA-directed RNA polymerase II subunit RPB4 [Salmo salar]
gi|221221172|gb|ACM09247.1| DNA-directed RNA polymerase II subunit RPB4 [Salmo salar]
Length = 143
Score = 210 bits (534), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 103/130 (79%), Positives = 114/130 (87%)
Query: 77 VEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFR 136
+EEDA L FPKEFENAETLL SEVHMLL+HRK QNE+AE+EQE SEVF KTL YT RF
Sbjct: 14 IEEDASQLLFPKEFENAETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLNYTARFS 73
Query: 137 KFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
+FKNRETI SVR+LL QKKLHKFELA++ANLCPE EEAKALIPS+E RFE+EEL+QILD
Sbjct: 74 RFKNRETIASVRSLLLQKKLHKFELASLANLCPEAAEEAKALIPSVEGRFEDEELQQILD 133
Query: 197 DIQTKRSLQY 206
DIQTKRS QY
Sbjct: 134 DIQTKRSFQY 143
>gi|83754528|pdb|2C35|A Chain A, Subunits Rpb4 And Rpb7 Of Human Rna Polymerase Ii
gi|83754530|pdb|2C35|C Chain C, Subunits Rpb4 And Rpb7 Of Human Rna Polymerase Ii
gi|83754532|pdb|2C35|E Chain E, Subunits Rpb4 And Rpb7 Of Human Rna Polymerase Ii
gi|83754534|pdb|2C35|G Chain G, Subunits Rpb4 And Rpb7 Of Human Rna Polymerase Ii
Length = 152
Score = 209 bits (532), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 109/151 (72%), Positives = 120/151 (79%), Gaps = 3/151 (1%)
Query: 59 SDRVSIGYIIMTHVLD---QVVEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENA 115
S R S+G + D VEEDA L FPKEFE AETLL SEVHMLL+HRK QNE+A
Sbjct: 2 SRRASVGSQMAAGGSDPRAGDVEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESA 61
Query: 116 EEEQEFSEVFQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEA 175
E+EQE SEVF KTL YT RF +FKNRETI SVR+LL QKKLHKFELA +ANLCPET EE+
Sbjct: 62 EDEQELSEVFMKTLNYTARFSRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEES 121
Query: 176 KALIPSLECRFEEEELRQILDDIQTKRSLQY 206
KALIPSLE RFE+EEL+QILDDIQTKRS QY
Sbjct: 122 KALIPSLEGRFEDEELQQILDDIQTKRSFQY 152
>gi|327267294|ref|XP_003218437.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like [Anolis
carolinensis]
Length = 142
Score = 209 bits (531), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 105/130 (80%), Positives = 113/130 (86%)
Query: 77 VEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFR 136
VEEDA L FPKEFE AETLL SEVHMLL+HRK QNE+AE+EQE SEVF KTL YT RF
Sbjct: 13 VEEDASQLVFPKEFETAETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLNYTARFS 72
Query: 137 KFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
+FKNRETI SVR+LL QKKLHKFELA +ANLCPET EEAKALIPSLE RFE+EEL+QILD
Sbjct: 73 RFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEEAKALIPSLEGRFEDEELQQILD 132
Query: 197 DIQTKRSLQY 206
DIQTKRS QY
Sbjct: 133 DIQTKRSFQY 142
>gi|350538413|ref|NP_001232096.1| putative DNA directed RNA polymerase II polypeptide D [Taeniopygia
guttata]
gi|118094833|ref|XP_422576.2| PREDICTED: uncharacterized protein LOC424754 [Gallus gallus]
gi|326925590|ref|XP_003208995.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Meleagris gallopavo]
gi|197127794|gb|ACH44292.1| putative DNA directed RNA polymerase II polypeptide D [Taeniopygia
guttata]
gi|197127795|gb|ACH44293.1| putative DNA directed RNA polymerase II polypeptide D [Taeniopygia
guttata]
gi|197127796|gb|ACH44294.1| putative DNA directed RNA polymerase II polypeptide D [Taeniopygia
guttata]
Length = 142
Score = 208 bits (530), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 105/130 (80%), Positives = 113/130 (86%)
Query: 77 VEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFR 136
VEEDA L FPKEFE AETLL SEVHMLL+HRK QNE+AE+EQE SEVF KTL YT RF
Sbjct: 13 VEEDASQLVFPKEFETAETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLNYTARFS 72
Query: 137 KFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
+FKNRETI SVR+LL QKKLHKFELA +ANLCPET EEAKALIPSLE RFE+EEL+QILD
Sbjct: 73 RFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEEAKALIPSLEGRFEDEELQQILD 132
Query: 197 DIQTKRSLQY 206
DIQTKRS QY
Sbjct: 133 DIQTKRSFQY 142
>gi|148233814|ref|NP_001087315.1| polymerase (RNA) II (DNA directed) polypeptide D [Xenopus laevis]
gi|51873947|gb|AAH78547.1| MGC85403 protein [Xenopus laevis]
Length = 142
Score = 208 bits (530), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 107/137 (78%), Positives = 116/137 (84%), Gaps = 2/137 (1%)
Query: 70 THVLDQVVEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTL 129
TH D EEDA L FPKEFE+AETLL SEVHMLL+HRK QNE+AEEEQE SEVF KTL
Sbjct: 8 THSGD--AEEDASQLLFPKEFESAETLLNSEVHMLLEHRKQQNESAEEEQELSEVFMKTL 65
Query: 130 TYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEE 189
YT RF +FKNRETI SVR+LL QKKLH+FELA +ANLCPET +EAKALIPSLE RFEEE
Sbjct: 66 NYTARFSRFKNRETIASVRSLLLQKKLHRFELACLANLCPETADEAKALIPSLEGRFEEE 125
Query: 190 ELRQILDDIQTKRSLQY 206
EL+QILDDIQTKRS QY
Sbjct: 126 ELQQILDDIQTKRSFQY 142
>gi|126325917|ref|XP_001366384.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Monodelphis domestica]
Length = 142
Score = 208 bits (530), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 105/130 (80%), Positives = 113/130 (86%)
Query: 77 VEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFR 136
VEEDA L FPKEFE AETLL SEVHMLL+HRK QNE+AE+EQE SEVF KTL YT RF
Sbjct: 13 VEEDASQLVFPKEFETAETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLNYTARFS 72
Query: 137 KFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
+FKNRETI SVR+LL QKKLHKFELA +ANLCPET EEAKALIPSLE RFE+EEL+QILD
Sbjct: 73 RFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEEAKALIPSLEGRFEDEELQQILD 132
Query: 197 DIQTKRSLQY 206
DIQTKRS QY
Sbjct: 133 DIQTKRSFQY 142
>gi|443714916|gb|ELU07114.1| hypothetical protein CAPTEDRAFT_220021 [Capitella teleta]
Length = 139
Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 104/128 (81%), Positives = 116/128 (90%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRK 137
EED+ +L FPKEFENAETLLISEV+MLLQHR QNENAE+EQE SEVF+KTLT+TERF+K
Sbjct: 11 EEDSSELIFPKEFENAETLLISEVYMLLQHRAQQNENAEDEQELSEVFKKTLTHTERFKK 70
Query: 138 FKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDD 197
FKNRETI SVR+LL QKKLHKFELAA+ANLCPET EEAKALIPSLE RFE+E L+QILDD
Sbjct: 71 FKNRETIASVRSLLMQKKLHKFELAALANLCPETAEEAKALIPSLEGRFEDEALQQILDD 130
Query: 198 IQTKRSLQ 205
I+TK S Q
Sbjct: 131 IKTKISFQ 138
>gi|395519329|ref|XP_003763803.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Sarcophilus
harrisii]
Length = 142
Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 105/130 (80%), Positives = 113/130 (86%)
Query: 77 VEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFR 136
VEEDA L FPKEFE AETLL SEVHMLL+HRK QNE+AE+EQE SEVF KTL YT RF
Sbjct: 13 VEEDASQLVFPKEFETAETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLNYTARFS 72
Query: 137 KFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
+FKNRETI SVR+LL QKKLHKFELA +ANLCPET EEAKALIPSLE RFE+EEL+QILD
Sbjct: 73 RFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEEAKALIPSLEGRFEDEELQQILD 132
Query: 197 DIQTKRSLQY 206
DIQTKRS QY
Sbjct: 133 DIQTKRSFQY 142
>gi|410910710|ref|XP_003968833.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Takifugu rubripes]
Length = 142
Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 103/130 (79%), Positives = 114/130 (87%)
Query: 77 VEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFR 136
VEEDA L FPKEFENAETLL SEVHMLL+HRK QNE+AE+EQE SEVF KTL YT RF
Sbjct: 13 VEEDASQLLFPKEFENAETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLNYTARFS 72
Query: 137 KFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
+FKNRETI +VR+LL QKKLHKFELA++ANLCPE EEAKALIPSLE RFE++EL+QILD
Sbjct: 73 RFKNRETIAAVRSLLLQKKLHKFELASLANLCPEAAEEAKALIPSLEGRFEDDELQQILD 132
Query: 197 DIQTKRSLQY 206
DIQTKRS QY
Sbjct: 133 DIQTKRSFQY 142
>gi|226372342|gb|ACO51796.1| DNA-directed RNA polymerase II subunit RPB4 [Rana catesbeiana]
Length = 142
Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 104/130 (80%), Positives = 114/130 (87%)
Query: 77 VEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFR 136
VEEDA L FPKEFE+AETLL SEVHMLL+HRK QNE+AEEEQE SEVF KTL YT RF
Sbjct: 13 VEEDASQLLFPKEFESAETLLNSEVHMLLEHRKQQNESAEEEQELSEVFMKTLNYTARFS 72
Query: 137 KFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
+FKNRETI SVR+LL QKKLH+FELA +ANLCPET +EAKALIPSLE RFE+EEL+QILD
Sbjct: 73 RFKNRETIASVRSLLLQKKLHRFELACLANLCPETADEAKALIPSLEGRFEDEELQQILD 132
Query: 197 DIQTKRSLQY 206
DIQTKRS QY
Sbjct: 133 DIQTKRSFQY 142
>gi|431907394|gb|ELK11340.1| DNA-directed RNA polymerase II subunit RPB4 [Pteropus alecto]
Length = 149
Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 104/130 (80%), Positives = 113/130 (86%)
Query: 77 VEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFR 136
VEEDA L FPKEFE AETLL SEVHMLL+HRK QNE+AE+EQE SEVF KTL YT RF
Sbjct: 20 VEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLNYTARFS 79
Query: 137 KFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
+FKNRETI SVR+LL QKKLHKFELA +ANLCPET EE+KALIPSLE RFE+EEL+QILD
Sbjct: 80 RFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGRFEDEELQQILD 139
Query: 197 DIQTKRSLQY 206
DIQTKRS QY
Sbjct: 140 DIQTKRSFQY 149
>gi|345497367|ref|XP_001599421.2| PREDICTED: transcriptional adapter 2-alpha [Nasonia vitripennis]
Length = 569
Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 101/118 (85%), Positives = 111/118 (94%)
Query: 89 EFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVR 148
+FENA+TLLISEVHMLL+HRK QNE+AEEEQEFSEVF K+LTYT RFRKFKN+ETI +VR
Sbjct: 452 DFENADTLLISEVHMLLEHRKAQNESAEEEQEFSEVFMKSLTYTNRFRKFKNKETIAAVR 511
Query: 149 NLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKRSLQY 206
NLL+QKKLHKFELA+IANLCPETPEEAKALIPSLE R E+EELR ILDDIQTKRSLQY
Sbjct: 512 NLLSQKKLHKFELASIANLCPETPEEAKALIPSLEGRLEDEELRTILDDIQTKRSLQY 569
>gi|344290054|ref|XP_003416754.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Loxodonta africana]
Length = 142
Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 104/130 (80%), Positives = 113/130 (86%)
Query: 77 VEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFR 136
VEEDA L FPKEFE AETLL SEVHMLL+HRK QNE+AE+EQE SEVF KTL YT RF
Sbjct: 13 VEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLNYTARFS 72
Query: 137 KFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
+FKNRETI SVR+LL QKKLHKFELA +ANLCPET EE+KALIPSLE RFE+EEL+QILD
Sbjct: 73 RFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGRFEDEELQQILD 132
Query: 197 DIQTKRSLQY 206
DIQTKRS QY
Sbjct: 133 DIQTKRSFQY 142
>gi|242009106|ref|XP_002425333.1| transcriptional adaptor, putative [Pediculus humanus corporis]
gi|212509118|gb|EEB12595.1| transcriptional adaptor, putative [Pediculus humanus corporis]
Length = 602
Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 102/118 (86%), Positives = 111/118 (94%)
Query: 89 EFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVR 148
+FENAETL+ISEVHMLL+HRK QNE+AEEE EFS+VF KTLTYT RFRKFKN+ETI+SVR
Sbjct: 485 QFENAETLIISEVHMLLEHRKAQNESAEEELEFSDVFMKTLTYTNRFRKFKNKETISSVR 544
Query: 149 NLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKRSLQY 206
NLL QKKLHKFELAA+ANLCPETPEEAKALIPSLE RFE+EELRQ LDDIQTKRSLQY
Sbjct: 545 NLLMQKKLHKFELAALANLCPETPEEAKALIPSLEGRFEDEELRQTLDDIQTKRSLQY 602
>gi|62858949|ref|NP_001016248.1| polymerase (RNA) II (DNA directed) polypeptide D [Xenopus
(Silurana) tropicalis]
gi|189441952|gb|AAI67274.1| polymerase (RNA) II (DNA directed) polypeptide D [Xenopus
(Silurana) tropicalis]
gi|189442580|gb|AAI67273.1| polymerase (RNA) II (DNA directed) polypeptide D [Xenopus
(Silurana) tropicalis]
Length = 142
Score = 207 bits (526), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 104/129 (80%), Positives = 113/129 (87%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRK 137
EEDA L FPKEFE+AETLL SEVHMLL+HRK QNE+AEEEQE SEVF KTL YT RF +
Sbjct: 14 EEDASQLLFPKEFESAETLLNSEVHMLLEHRKQQNESAEEEQELSEVFMKTLNYTARFSR 73
Query: 138 FKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDD 197
FKNRETI SVR+LL QKKLH+FELA +ANLCPET +EAKALIPSLE RFEEEEL+QILDD
Sbjct: 74 FKNRETIASVRSLLLQKKLHRFELACLANLCPETADEAKALIPSLEGRFEEEELQQILDD 133
Query: 198 IQTKRSLQY 206
IQTKRS QY
Sbjct: 134 IQTKRSFQY 142
>gi|291387945|ref|XP_002710495.1| PREDICTED: DNA directed RNA polymerase II polypeptide D
[Oryctolagus cuniculus]
Length = 142
Score = 207 bits (526), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 104/130 (80%), Positives = 114/130 (87%)
Query: 77 VEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFR 136
V+EDA L FPKEFE AETLL SEVHMLL+HRK QNE+AE+EQE SEVF KTLTYT RF
Sbjct: 13 VKEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLTYTARFS 72
Query: 137 KFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
+FKNRETI SVR+LL QKKLHKFELA +ANLCPET EE+KALIPSLE RFE+EEL+QILD
Sbjct: 73 RFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGRFEDEELQQILD 132
Query: 197 DIQTKRSLQY 206
DIQTKRS QY
Sbjct: 133 DIQTKRSFQY 142
>gi|395855890|ref|XP_003800379.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Otolemur
garnettii]
Length = 142
Score = 207 bits (526), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 104/130 (80%), Positives = 113/130 (86%)
Query: 77 VEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFR 136
VEEDA L FPKEFE AETLL SEVHMLL+HRK QNE+AE+EQE SEVF KTL YT RF
Sbjct: 13 VEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLNYTSRFS 72
Query: 137 KFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
+FKNRETI SVR+LL QKKLHKFELA +ANLCPET EE+KALIPSLE RFE+EEL+QILD
Sbjct: 73 RFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGRFEDEELQQILD 132
Query: 197 DIQTKRSLQY 206
DIQTKRS QY
Sbjct: 133 DIQTKRSFQY 142
>gi|197129913|gb|ACH46411.1| putative DNA directed RNA polymerase II polypeptide D [Taeniopygia
guttata]
Length = 142
Score = 207 bits (526), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 104/130 (80%), Positives = 113/130 (86%)
Query: 77 VEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFR 136
VEEDA L FPKEFE AETLL SEVHMLL+HRK QNE+AE++QE SEVF KTL YT RF
Sbjct: 13 VEEDASQLVFPKEFETAETLLNSEVHMLLEHRKQQNESAEDKQELSEVFMKTLNYTARFS 72
Query: 137 KFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
+FKNRETI SVR+LL QKKLHKFELA +ANLCPET EEAKALIPSLE RFE+EEL+QILD
Sbjct: 73 RFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEEAKALIPSLEGRFEDEELQQILD 132
Query: 197 DIQTKRSLQY 206
DIQTKRS QY
Sbjct: 133 DIQTKRSFQY 142
>gi|4758574|ref|NP_004796.1| DNA-directed RNA polymerase II subunit RPB4 [Homo sapiens]
gi|21312246|ref|NP_081278.1| DNA-directed RNA polymerase II subunit RPB4 isoform 1 [Mus
musculus]
gi|157820569|ref|NP_001102356.1| DNA-directed RNA polymerase II subunit RPB4 [Rattus norvegicus]
gi|354459066|ref|NP_001238888.1| DNA-directed RNA polymerase II subunit RPB4 [Pan troglodytes]
gi|73984138|ref|XP_540983.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Canis lupus
familiaris]
gi|297668367|ref|XP_002812414.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Pongo
abelii]
gi|301784665|ref|XP_002927746.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Ailuropoda melanoleuca]
gi|332258210|ref|XP_003278192.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Nomascus
leucogenys]
gi|410968462|ref|XP_003990724.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Felis
catus]
gi|426337134|ref|XP_004032578.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Gorilla
gorilla gorilla]
gi|3024558|sp|O15514.1|RPB4_HUMAN RecName: Full=DNA-directed RNA polymerase II subunit RPB4;
Short=RNA polymerase II subunit B4; AltName:
Full=DNA-directed RNA polymerase II subunit D; AltName:
Full=RNA polymerase II 16 kDa subunit; Short=RPB16
gi|50401678|sp|Q9D7M8.2|RPB4_MOUSE RecName: Full=DNA-directed RNA polymerase II subunit RPB4;
Short=RNA polymerase II subunit B4; AltName:
Full=DNA-directed RNA polymerase II subunit D
gi|2253633|gb|AAC80226.1| RNA polymerase II subunit hsRPB4 [Homo sapiens]
gi|2253635|gb|AAC52056.1| RNA polymerase II subunit hsRPB4 [Homo sapiens]
gi|12847830|dbj|BAB27725.1| unnamed protein product [Mus musculus]
gi|16877972|gb|AAH17205.1| Polymerase (RNA) II (DNA directed) polypeptide D [Homo sapiens]
gi|62739523|gb|AAH93795.1| Polymerase (RNA) II (DNA directed) polypeptide D [Homo sapiens]
gi|62739756|gb|AAH93797.1| Polymerase (RNA) II (DNA directed) polypeptide D [Homo sapiens]
gi|119615750|gb|EAW95344.1| polymerase (RNA) II (DNA directed) polypeptide D, isoform CRA_a
[Homo sapiens]
gi|119615751|gb|EAW95345.1| polymerase (RNA) II (DNA directed) polypeptide D, isoform CRA_a
[Homo sapiens]
gi|148664625|gb|EDK97041.1| polymerase (RNA) II (DNA directed) polypeptide D [Mus musculus]
gi|149017124|gb|EDL76175.1| polymerase (RNA) II (DNA directed) polypeptide D (predicted)
[Rattus norvegicus]
gi|208967080|dbj|BAG73554.1| polymerase (RNA) II (DNA directed) polypeptide D [synthetic
construct]
gi|281342733|gb|EFB18317.1| hypothetical protein PANDA_017559 [Ailuropoda melanoleuca]
gi|410214932|gb|JAA04685.1| polymerase (RNA) II (DNA directed) polypeptide D [Pan troglodytes]
gi|410259190|gb|JAA17561.1| polymerase (RNA) II (DNA directed) polypeptide D [Pan troglodytes]
gi|410287726|gb|JAA22463.1| polymerase (RNA) II (DNA directed) polypeptide D [Pan troglodytes]
gi|410350453|gb|JAA41830.1| polymerase (RNA) II (DNA directed) polypeptide D [Pan troglodytes]
gi|444721464|gb|ELW62200.1| DNA-directed RNA polymerase II subunit RPB4 [Tupaia chinensis]
Length = 142
Score = 207 bits (526), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 104/130 (80%), Positives = 113/130 (86%)
Query: 77 VEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFR 136
VEEDA L FPKEFE AETLL SEVHMLL+HRK QNE+AE+EQE SEVF KTL YT RF
Sbjct: 13 VEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLNYTARFS 72
Query: 137 KFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
+FKNRETI SVR+LL QKKLHKFELA +ANLCPET EE+KALIPSLE RFE+EEL+QILD
Sbjct: 73 RFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGRFEDEELQQILD 132
Query: 197 DIQTKRSLQY 206
DIQTKRS QY
Sbjct: 133 DIQTKRSFQY 142
>gi|115497864|ref|NP_001069926.1| DNA-directed RNA polymerase II subunit RPB4 [Bos taurus]
gi|94574089|gb|AAI16156.1| Polymerase (RNA) II (DNA directed) polypeptide D [Bos taurus]
gi|296490760|tpg|DAA32873.1| TPA: RNA polymerase II polypeptide D [Bos taurus]
gi|440907193|gb|ELR57366.1| DNA-directed RNA polymerase II subunit RPB4 [Bos grunniens mutus]
Length = 142
Score = 207 bits (526), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 104/130 (80%), Positives = 113/130 (86%)
Query: 77 VEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFR 136
VEEDA L FPKEFE AETLL SEVHMLL+HRK QNE+AE+EQE SEVF KTL YT RF
Sbjct: 13 VEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLNYTARFS 72
Query: 137 KFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
+FKNRETI SVR+LL QKKLHKFELA +ANLCPET EE+KALIPSLE RFE+EEL+QILD
Sbjct: 73 RFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGRFEDEELQQILD 132
Query: 197 DIQTKRSLQY 206
DIQTKRS QY
Sbjct: 133 DIQTKRSFQY 142
>gi|392306987|ref|NP_001254716.1| DNA-directed RNA polymerase II subunit RPB4 [Macaca mulatta]
gi|402892232|ref|XP_003909323.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Papio
anubis]
gi|355566071|gb|EHH22500.1| hypothetical protein EGK_05780 [Macaca mulatta]
gi|355751666|gb|EHH55921.1| hypothetical protein EGM_05224 [Macaca fascicularis]
gi|380808166|gb|AFE75958.1| DNA-directed RNA polymerase II subunit RPB4 [Macaca mulatta]
gi|383410355|gb|AFH28391.1| DNA-directed RNA polymerase II subunit RPB4 [Macaca mulatta]
gi|384943808|gb|AFI35509.1| DNA-directed RNA polymerase II subunit RPB4 [Macaca mulatta]
Length = 142
Score = 207 bits (526), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 104/130 (80%), Positives = 113/130 (86%)
Query: 77 VEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFR 136
VEEDA L FPKEFE AETLL SEVHMLL+HRK QNE+AE+EQE SEVF KTL YT RF
Sbjct: 13 VEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLNYTARFS 72
Query: 137 KFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
+FKNRETI SVR+LL QKKLHKFELA +ANLCPET EE+KALIPSLE RFE+EEL+QILD
Sbjct: 73 RFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGRFEDEELQQILD 132
Query: 197 DIQTKRSLQY 206
DIQTKRS QY
Sbjct: 133 DIQTKRSFQY 142
>gi|426220671|ref|XP_004004537.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Ovis aries]
Length = 142
Score = 206 bits (525), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 104/130 (80%), Positives = 113/130 (86%)
Query: 77 VEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFR 136
VEEDA L FPKEFE AETLL SEVHMLL+HRK QNE+AE+EQE SEVF KTL YT RF
Sbjct: 13 VEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLNYTARFS 72
Query: 137 KFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
+FKNRETI SVR+LL QKKLHKFELA +ANLCPET EE+KALIPSLE RFE+EEL+QILD
Sbjct: 73 RFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGRFEDEELQQILD 132
Query: 197 DIQTKRSLQY 206
DIQTKRS QY
Sbjct: 133 DIQTKRSFQY 142
>gi|225716192|gb|ACO13942.1| DNA-directed RNA polymerase II subunit RPB4 [Esox lucius]
Length = 143
Score = 206 bits (525), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 104/130 (80%), Positives = 113/130 (86%)
Query: 77 VEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFR 136
VEEDA L FPKEFENAETLL SEVHMLL+HRK QNE+AE+EQE SEVF KTL T RF
Sbjct: 14 VEEDASQLLFPKEFENAETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLNCTARFS 73
Query: 137 KFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
+FKNRETI SVR+LL QKKLHKFELA++ANLCPE EEAKALIPSLE RFE+EEL+QILD
Sbjct: 74 RFKNRETIGSVRSLLLQKKLHKFELASLANLCPEAAEEAKALIPSLEGRFEDEELQQILD 133
Query: 197 DIQTKRSLQY 206
DIQTKRS QY
Sbjct: 134 DIQTKRSFQY 143
>gi|291226512|ref|XP_002733236.1| PREDICTED: DNA directed RNA polymerase II polypeptide D-like
[Saccoglossus kowalevskii]
Length = 141
Score = 206 bits (524), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 101/129 (78%), Positives = 116/129 (89%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRK 137
EEDA +L+FPKEFE AETLL SEVHMLL+HRK QNE+AEEEQE SEVF KTL YT+RF +
Sbjct: 13 EEDASELKFPKEFEQAETLLNSEVHMLLEHRKAQNESAEEEQELSEVFMKTLNYTQRFSR 72
Query: 138 FKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDD 197
FKNRETIT VR+LL QKKLHKFEL++I+NLCPE+ EEAKALIPSLE RFE+EEL++ILD+
Sbjct: 73 FKNRETITEVRSLLMQKKLHKFELSSISNLCPESAEEAKALIPSLEGRFEDEELQEILDN 132
Query: 198 IQTKRSLQY 206
IQTKRS QY
Sbjct: 133 IQTKRSFQY 141
>gi|197127797|gb|ACH44295.1| putative DNA directed RNA polymerase II polypeptide D [Taeniopygia
guttata]
Length = 142
Score = 205 bits (522), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 103/130 (79%), Positives = 112/130 (86%)
Query: 77 VEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFR 136
VEEDA L FPKEFE AETLL SEVHMLL+HRK QNE+AE+EQE SEVF KTL YT RF
Sbjct: 13 VEEDASQLVFPKEFETAETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLNYTARFS 72
Query: 137 KFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
+F+ RETI SVR+LL QKKLHKFELA +ANLCPET EEAKALIPSLE RFE+EEL+QILD
Sbjct: 73 RFRGRETIASVRSLLLQKKLHKFELACLANLCPETAEEAKALIPSLEGRFEDEELQQILD 132
Query: 197 DIQTKRSLQY 206
DIQTKRS QY
Sbjct: 133 DIQTKRSFQY 142
>gi|380027418|ref|XP_003697421.1| PREDICTED: transcriptional adapter 2-alpha-like [Apis florea]
Length = 569
Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 108/151 (71%), Positives = 127/151 (84%), Gaps = 6/151 (3%)
Query: 62 VSIGYIIMTHVLD--QVV---EEDAGDLQFPK-EFENAETLLISEVHMLLQHRKTQNENA 115
S+ I+ T+ LD Q++ + +G L+ + EFENAETLLISEV+MLL+HRK QNE+A
Sbjct: 419 CSVTRIVPTNYLDFKQILIAENKKSGCLRLAQAEFENAETLLISEVYMLLEHRKAQNESA 478
Query: 116 EEEQEFSEVFQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEA 175
EEEQEFSEVF K+LTYT RFR+FKN+ETI +VRNLL QKKLHKFELA++ANLCPETPEEA
Sbjct: 479 EEEQEFSEVFMKSLTYTNRFRRFKNKETIAAVRNLLMQKKLHKFELASLANLCPETPEEA 538
Query: 176 KALIPSLECRFEEEELRQILDDIQTKRSLQY 206
KALIPSLE R E+EELR ILDDIQTKRSLQY
Sbjct: 539 KALIPSLEGRLEDEELRTILDDIQTKRSLQY 569
>gi|310756788|gb|ADP20535.1| DNA-directed RNA polymerase II subunit RPB4 [Fukomys anselli]
Length = 142
Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 103/130 (79%), Positives = 112/130 (86%)
Query: 77 VEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFR 136
VEEDA L FPKEFE AETLL SEVHMLL+HRK QNE+AE+EQE S VF KTL YT RF
Sbjct: 13 VEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDEQELSGVFMKTLNYTARFS 72
Query: 137 KFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
+FKNRETI SVR+LL QKKLHKFELA +ANLCPET EE+KALIPSLE RFE+EEL+QILD
Sbjct: 73 RFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGRFEDEELQQILD 132
Query: 197 DIQTKRSLQY 206
DIQTKRS QY
Sbjct: 133 DIQTKRSFQY 142
>gi|328787524|ref|XP_391932.4| PREDICTED: transcriptional adapter 2-alpha-like [Apis mellifera]
Length = 569
Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 108/151 (71%), Positives = 127/151 (84%), Gaps = 6/151 (3%)
Query: 62 VSIGYIIMTHVLD--QVV---EEDAGDLQFPK-EFENAETLLISEVHMLLQHRKTQNENA 115
S+ I+ T+ LD Q++ + +G L+ + EFENAETLLISEV+MLL+HRK QNE+A
Sbjct: 419 CSVTRIVPTNYLDFKQILIAENKKSGCLRLAQAEFENAETLLISEVYMLLEHRKAQNESA 478
Query: 116 EEEQEFSEVFQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEA 175
EEEQEFSEVF K+LTYT RFR+FKN+ETI +VRNLL QKKLHKFELA++ANLCPETPEEA
Sbjct: 479 EEEQEFSEVFMKSLTYTNRFRRFKNKETIAAVRNLLMQKKLHKFELASLANLCPETPEEA 538
Query: 176 KALIPSLECRFEEEELRQILDDIQTKRSLQY 206
KALIPSLE R E+EELR ILDDIQTKRSLQY
Sbjct: 539 KALIPSLEGRLEDEELRTILDDIQTKRSLQY 569
>gi|348586101|ref|XP_003478808.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like [Cavia
porcellus]
Length = 142
Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 103/130 (79%), Positives = 112/130 (86%)
Query: 77 VEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFR 136
VEEDA L FPKEFE AETLL SEVHMLL+HRK QNE+AE+EQE S VF KTL YT RF
Sbjct: 13 VEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDEQELSGVFMKTLNYTARFS 72
Query: 137 KFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
+FKNRETI SVR+LL QKKLHKFELA +ANLCPET EE+KALIPSLE RFE+EEL+QILD
Sbjct: 73 RFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGRFEDEELQQILD 132
Query: 197 DIQTKRSLQY 206
DIQTKRS QY
Sbjct: 133 DIQTKRSFQY 142
>gi|310756790|gb|ADP20536.1| DNA-directed RNA polymerase II subunit RPB4 [Heterocephalus glaber]
gi|351703153|gb|EHB06072.1| DNA-directed RNA polymerase II subunit RPB4 [Heterocephalus glaber]
Length = 142
Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 103/130 (79%), Positives = 112/130 (86%)
Query: 77 VEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFR 136
VEEDA L FPKEFE AETLL SEVHMLL+HRK QNE+AE+EQE S VF KTL YT RF
Sbjct: 13 VEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDEQELSGVFMKTLNYTARFS 72
Query: 137 KFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
+FKNRETI SVR+LL QKKLHKFELA +ANLCPET EE+KALIPSLE RFE+EEL+QILD
Sbjct: 73 RFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGRFEDEELQQILD 132
Query: 197 DIQTKRSLQY 206
DIQTKRS QY
Sbjct: 133 DIQTKRSFQY 142
>gi|198434387|ref|XP_002127588.1| PREDICTED: similar to polymerase (RNA) II (DNA directed)
polypeptide D [Ciona intestinalis]
Length = 145
Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 98/128 (76%), Positives = 115/128 (89%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRK 137
EED+ LQFP+EFE+AETLL SEVHMLL+HRK+QNENA++EQE SEVF KTL YT+RF +
Sbjct: 17 EEDSSQLQFPQEFESAETLLNSEVHMLLEHRKSQNENADDEQELSEVFMKTLNYTQRFSR 76
Query: 138 FKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDD 197
FKNRETITSVR LL QK LHKFELA++ANLCPET EEAKAL+PSLE RFE+E+L+Q+L+D
Sbjct: 77 FKNRETITSVRGLLLQKDLHKFELASLANLCPETAEEAKALVPSLEGRFEDEDLQQVLED 136
Query: 198 IQTKRSLQ 205
IQTKRS Q
Sbjct: 137 IQTKRSFQ 144
>gi|350418623|ref|XP_003491918.1| PREDICTED: transcriptional adapter 2-alpha-like [Bombus impatiens]
Length = 569
Score = 203 bits (517), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 117/186 (62%), Positives = 140/186 (75%), Gaps = 20/186 (10%)
Query: 41 SNQIKSALS--KSVPPRT----PYSDRV--------SIGYIIMTHVLD--QVV---EEDA 81
SN I S ++ K+ PP P +++ SI I+ T+ LD Q++ + A
Sbjct: 384 SNSISSTIAQRKTAPPLAIQGLPGYEKLTSAEKELCSITRIVPTNYLDFKQILIAENKKA 443
Query: 82 GDLQFPK-EFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKN 140
G L+ + EFENAETLLISEV MLL+HRK QNE+AEEEQEFSEVF K+LTYT RFR+FKN
Sbjct: 444 GYLRLAQAEFENAETLLISEVLMLLEHRKAQNESAEEEQEFSEVFMKSLTYTNRFRRFKN 503
Query: 141 RETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQT 200
+ETI +VRNLL QKKLHKFELA++ANLCPETPEEAKALIPSLE R E+EELR IL+DIQT
Sbjct: 504 KETIAAVRNLLMQKKLHKFELASLANLCPETPEEAKALIPSLEGRLEDEELRTILEDIQT 563
Query: 201 KRSLQY 206
KRSLQY
Sbjct: 564 KRSLQY 569
>gi|391330614|ref|XP_003739752.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Metaseiulus occidentalis]
Length = 144
Score = 203 bits (516), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 101/135 (74%), Positives = 115/135 (85%)
Query: 72 VLDQVVEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTY 131
V+ + VEEDA +L FPK+FENAETLLISEVHMLL+HR QNE+AEEEQE SE F KT Y
Sbjct: 10 VVLEAVEEDACELSFPKDFENAETLLISEVHMLLEHRSKQNESAEEEQELSEFFTKTHGY 69
Query: 132 TERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEEL 191
RF KFKNRETI VRNLL QKKLHKFELA +ANLCPETPEEAKALIPSLE RFE+E+L
Sbjct: 70 CTRFSKFKNRETIGEVRNLLQQKKLHKFELAQLANLCPETPEEAKALIPSLEGRFEDEDL 129
Query: 192 RQILDDIQTKRSLQY 206
R++LDDIQT++S Q+
Sbjct: 130 REVLDDIQTQKSFQF 144
>gi|170042819|ref|XP_001849109.1| DNA-directed RNA polymerase II 16 kDa polypeptide [Culex
quinquefasciatus]
gi|167866266|gb|EDS29649.1| DNA-directed RNA polymerase II 16 kDa polypeptide [Culex
quinquefasciatus]
Length = 139
Score = 203 bits (516), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 109/131 (83%), Positives = 117/131 (89%)
Query: 76 VVEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERF 135
+VEEDA DLQFPKEFENAETLLISEVHMLL+HRK QNE++EEEQEFS+VF KT YT F
Sbjct: 9 LVEEDAADLQFPKEFENAETLLISEVHMLLEHRKNQNESSEEEQEFSDVFLKTYNYTGLF 68
Query: 136 RKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQIL 195
RKFKN+ETI SVRNLL KKLHKFELAA+ NLCPE PEEAKALIPSLE RFE+EELRQIL
Sbjct: 69 RKFKNKETIASVRNLLMSKKLHKFELAALGNLCPEAPEEAKALIPSLEGRFEDEELRQIL 128
Query: 196 DDIQTKRSLQY 206
DDI TKRSLQY
Sbjct: 129 DDIGTKRSLQY 139
>gi|226372134|gb|ACO51692.1| DNA-directed RNA polymerase II subunit RPB4 [Rana catesbeiana]
Length = 142
Score = 203 bits (516), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 102/130 (78%), Positives = 112/130 (86%)
Query: 77 VEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFR 136
VEEDA L FPKEFE+AETLL EVHMLL+HRK QNE+AEEEQE SEVF KTL YT RF
Sbjct: 13 VEEDASQLLFPKEFESAETLLNPEVHMLLEHRKQQNESAEEEQELSEVFMKTLNYTARFS 72
Query: 137 KFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
+FKNRETI SVR+LL QKKLH+FELA +ANLCP T +EAKALIPSLE RFE+EEL+QILD
Sbjct: 73 RFKNRETIASVRSLLLQKKLHRFELACLANLCPGTADEAKALIPSLEGRFEDEELQQILD 132
Query: 197 DIQTKRSLQY 206
DIQTKRS QY
Sbjct: 133 DIQTKRSFQY 142
>gi|340722607|ref|XP_003399695.1| PREDICTED: transcriptional adapter 2-alpha-like [Bombus terrestris]
Length = 569
Score = 202 bits (515), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 117/186 (62%), Positives = 140/186 (75%), Gaps = 20/186 (10%)
Query: 41 SNQIKSALS--KSVPPRT----PYSDRV--------SIGYIIMTHVLD--QVV---EEDA 81
SN I S ++ K+ PP P +++ SI I+ T+ LD Q++ + A
Sbjct: 384 SNSISSTIAQRKTAPPLAIQGLPGYEKLTSAEKELCSITRIVPTNYLDFKQILIAENKKA 443
Query: 82 GDLQFPK-EFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKN 140
G L+ + EFENAETLLISEV MLL+HRK QNE+AEEEQEFSEVF K+LTYT RFR+FKN
Sbjct: 444 GYLRLAQAEFENAETLLISEVLMLLEHRKAQNESAEEEQEFSEVFMKSLTYTNRFRRFKN 503
Query: 141 RETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQT 200
+ETI +VRNLL QKKLHKFELA++ANLCPETPEEAKALIPSLE R E+EELR IL+DIQT
Sbjct: 504 KETIAAVRNLLMQKKLHKFELASLANLCPETPEEAKALIPSLEGRLEDEELRTILEDIQT 563
Query: 201 KRSLQY 206
KRSLQY
Sbjct: 564 KRSLQY 569
>gi|383851643|ref|XP_003701341.1| PREDICTED: transcriptional adapter 2-alpha-like isoform 1
[Megachile rotundata]
Length = 569
Score = 202 bits (514), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 100/118 (84%), Positives = 109/118 (92%)
Query: 89 EFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVR 148
EFENAETLLISEV MLL+HRK QNE+AEEEQEFSEVF K+LTYT RFR+FKN+ETI +VR
Sbjct: 452 EFENAETLLISEVSMLLEHRKAQNESAEEEQEFSEVFMKSLTYTNRFRRFKNKETIAAVR 511
Query: 149 NLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKRSLQY 206
NLL QKKLHKFELA++ANLCPETPEEAKALIPSLE R E+EELR ILDDIQTKRSLQY
Sbjct: 512 NLLMQKKLHKFELASLANLCPETPEEAKALIPSLEGRLEDEELRTILDDIQTKRSLQY 569
>gi|387018222|gb|AFJ51229.1| DNA-directed RNA polymerase II subunit RPB4-like [Crotalus
adamanteus]
Length = 142
Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 102/130 (78%), Positives = 111/130 (85%)
Query: 77 VEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFR 136
VEEDA L FPKEFE AETLL SEVHMLL+HRK QNE+ E+EQE SE+F KTL YT RF
Sbjct: 13 VEEDASQLVFPKEFETAETLLNSEVHMLLEHRKQQNESVEDEQELSELFMKTLNYTGRFS 72
Query: 137 KFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
+FKNRETI SVR+LL QKKLHKFELA +ANL PET EEAKALIPSLE RFE+EEL+QILD
Sbjct: 73 RFKNRETIASVRSLLLQKKLHKFELACLANLGPETAEEAKALIPSLEGRFEDEELQQILD 132
Query: 197 DIQTKRSLQY 206
DIQTKRS QY
Sbjct: 133 DIQTKRSFQY 142
>gi|240849411|ref|NP_001155406.1| histone acetyltransferase-like [Acyrthosiphon pisum]
gi|328700946|ref|XP_003241435.1| PREDICTED: DNA-directed RNA polymerase II 16 kDa polypeptide-like
[Acyrthosiphon pisum]
gi|239793466|dbj|BAH72847.1| ACYPI000946 [Acyrthosiphon pisum]
Length = 138
Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 99/138 (71%), Positives = 117/138 (84%)
Query: 69 MTHVLDQVVEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKT 128
M ++ V+EDA LQFPKEFENAETLLISEV+MLL+ RK QNE+AEEEQEFSEVF KT
Sbjct: 1 MAQHMNAAVDEDAALLQFPKEFENAETLLISEVNMLLKFRKNQNESAEEEQEFSEVFNKT 60
Query: 129 LTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEE 188
LTYTE+ KFKN+ETI +VRNLL KKLHKFELA+I NLCP+ +EAK+LIPSLE RF++
Sbjct: 61 LTYTEQCSKFKNKETIVAVRNLLAGKKLHKFELASIGNLCPQLADEAKSLIPSLEGRFDD 120
Query: 189 EELRQILDDIQTKRSLQY 206
+EL+QILDDIQ K S+QY
Sbjct: 121 DELQQILDDIQAKLSIQY 138
>gi|195348909|ref|XP_002040989.1| GM15313 [Drosophila sechellia]
gi|194122594|gb|EDW44637.1| GM15313 [Drosophila sechellia]
Length = 137
Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 101/143 (70%), Positives = 115/143 (80%), Gaps = 9/143 (6%)
Query: 64 IGYIIMTHVLDQVVEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSE 123
+ Y+I+++++ F EFENAETLLISEVHMLL HRK QNE+A+EEQEFSE
Sbjct: 4 VKYLILSNIIW---------FLFVPEFENAETLLISEVHMLLDHRKRQNESADEEQEFSE 54
Query: 124 VFQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLE 183
VF KT YT+ FRKFKN+ETI S R+LL QKKLHKFELAA+ NLCPE PEEAKALIPSLE
Sbjct: 55 VFMKTYAYTDSFRKFKNKETIMSARSLLMQKKLHKFELAALGNLCPEAPEEAKALIPSLE 114
Query: 184 CRFEEEELRQILDDIQTKRSLQY 206
RFE+EELRQILDDI TKRSLQY
Sbjct: 115 GRFEDEELRQILDDIGTKRSLQY 137
>gi|383851645|ref|XP_003701342.1| PREDICTED: transcriptional adapter 2-alpha-like isoform 2
[Megachile rotundata]
Length = 580
Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 99/118 (83%), Positives = 109/118 (92%)
Query: 89 EFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVR 148
+FENAETLLISEV MLL+HRK QNE+AEEEQEFSEVF K+LTYT RFR+FKN+ETI +VR
Sbjct: 463 QFENAETLLISEVSMLLEHRKAQNESAEEEQEFSEVFMKSLTYTNRFRRFKNKETIAAVR 522
Query: 149 NLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKRSLQY 206
NLL QKKLHKFELA++ANLCPETPEEAKALIPSLE R E+EELR ILDDIQTKRSLQY
Sbjct: 523 NLLMQKKLHKFELASLANLCPETPEEAKALIPSLEGRLEDEELRTILDDIQTKRSLQY 580
>gi|194764549|ref|XP_001964391.1| GF23150 [Drosophila ananassae]
gi|190614663|gb|EDV30187.1| GF23150 [Drosophila ananassae]
Length = 624
Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 98/118 (83%), Positives = 106/118 (89%)
Query: 89 EFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVR 148
+FENAETLLISEVHMLL HRK QNE+A+EEQEFSEVF KT YT+ FRKFKN+ETI SVR
Sbjct: 507 QFENAETLLISEVHMLLDHRKRQNESADEEQEFSEVFMKTYAYTDSFRKFKNKETIMSVR 566
Query: 149 NLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKRSLQY 206
+LL QKKLHKFELAA+ NLCPE PEEAKALIPSLE RFE+EELRQILDDI TKRSLQY
Sbjct: 567 SLLMQKKLHKFELAALGNLCPEAPEEAKALIPSLEGRFEDEELRQILDDIGTKRSLQY 624
>gi|195152017|ref|XP_002016935.1| GL22027 [Drosophila persimilis]
gi|194111992|gb|EDW34035.1| GL22027 [Drosophila persimilis]
Length = 629
Score = 200 bits (508), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 98/118 (83%), Positives = 106/118 (89%)
Query: 89 EFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVR 148
+FENAETLLISEVHMLL HRK QNE+A+EEQEFSEVF KT YT+ FRKFKN+ETI SVR
Sbjct: 512 QFENAETLLISEVHMLLDHRKRQNESADEEQEFSEVFMKTYAYTDSFRKFKNKETIMSVR 571
Query: 149 NLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKRSLQY 206
+LL QKKLHKFELAA+ NLCPE PEEAKALIPSLE RFE+EELRQILDDI TKRSLQY
Sbjct: 572 SLLMQKKLHKFELAALGNLCPEAPEEAKALIPSLEGRFEDEELRQILDDIGTKRSLQY 629
>gi|307196407|gb|EFN77996.1| Transcriptional adapter 2-alpha [Harpegnathos saltator]
Length = 570
Score = 199 bits (507), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 118/208 (56%), Positives = 145/208 (69%), Gaps = 16/208 (7%)
Query: 2 VCLGLGQNKEKTVSFLLSTSRISPGDCVVSLFP-RKIQPKSNQIKSALSKSVPPRTPYSD 60
V G G N S ++S +I+P + L K+ ++ SA+ + VP
Sbjct: 376 VVQGYGTNSTSPTSSVISQRKIAPPLPIKGLPSYEKLTTSERELCSAI-RIVPS------ 428
Query: 61 RVSIGYIIMTHVLDQVVE-EDAGDLQFPK-EFENAETLLISEVHMLLQHRKTQNENAEEE 118
Y+ H+L + E + G L+ + +FENAETLLISEV+MLL+HRK QNE+AEEE
Sbjct: 429 ----CYLDFKHLL--IAENKKNGSLKLAQAQFENAETLLISEVYMLLEHRKAQNESAEEE 482
Query: 119 QEFSEVFQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKAL 178
QEFSEVF K+LTYT RF K KN+ETIT+VRNLL QKKLHKFELA++ANLCPETPEEAKAL
Sbjct: 483 QEFSEVFMKSLTYTNRFGKLKNKETITAVRNLLAQKKLHKFELASLANLCPETPEEAKAL 542
Query: 179 IPSLECRFEEEELRQILDDIQTKRSLQY 206
IPSLE R E+EELR IL+DIQTKRSLQY
Sbjct: 543 IPSLEGRLEDEELRTILEDIQTKRSLQY 570
>gi|195569945|ref|XP_002102969.1| GD20190 [Drosophila simulans]
gi|194198896|gb|EDX12472.1| GD20190 [Drosophila simulans]
Length = 782
Score = 198 bits (504), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 97/118 (82%), Positives = 105/118 (88%)
Query: 89 EFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVR 148
+FENAETLLISEVHMLL HRK QNE+A+EEQEFSEVF KT YT+ FRKFKN+ETI S R
Sbjct: 665 QFENAETLLISEVHMLLDHRKRQNESADEEQEFSEVFMKTYAYTDSFRKFKNKETIMSAR 724
Query: 149 NLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKRSLQY 206
+LL QKKLHKFELAA+ NLCPE PEEAKALIPSLE RFE+EELRQILDDI TKRSLQY
Sbjct: 725 SLLMQKKLHKFELAALGNLCPEAPEEAKALIPSLEGRFEDEELRQILDDIGTKRSLQY 782
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/61 (77%), Positives = 53/61 (86%)
Query: 89 EFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVR 148
+FENAETLLISEVHMLL HRK QNE+A+EEQEFSEVF KT YT+ FRKFKN+ETI S R
Sbjct: 508 QFENAETLLISEVHMLLDHRKRQNESADEEQEFSEVFMKTYAYTDSFRKFKNKETIMSAR 567
Query: 149 N 149
+
Sbjct: 568 S 568
>gi|347965542|ref|XP_003435782.1| AGAP001228-PB [Anopheles gambiae str. PEST]
gi|333470463|gb|EGK97631.1| AGAP001228-PB [Anopheles gambiae str. PEST]
Length = 139
Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 106/131 (80%), Positives = 119/131 (90%)
Query: 76 VVEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERF 135
+VEEDA DLQFPKEFE+AETLLISEVHMLL+HRK QNE++EEEQEFSEVF KT TYT F
Sbjct: 9 MVEEDAADLQFPKEFESAETLLISEVHMLLEHRKNQNESSEEEQEFSEVFHKTYTYTNEF 68
Query: 136 RKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQIL 195
RKF+N+ETI SVR+LL QKKLHKFELAA+ NLCP +PEEAKALIPSLE RFE++EL+QIL
Sbjct: 69 RKFRNKETIASVRSLLMQKKLHKFELAALGNLCPASPEEAKALIPSLEGRFEDDELQQIL 128
Query: 196 DDIQTKRSLQY 206
DDI TKRSLQY
Sbjct: 129 DDIGTKRSLQY 139
>gi|307179587|gb|EFN67883.1| DNA-directed RNA polymerase II 16 kDa polypeptide [Camponotus
floridanus]
Length = 124
Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 97/118 (82%), Positives = 108/118 (91%)
Query: 89 EFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVR 148
EFENAETLLISEV+MLL+HRK QNE+AEEEQEFSEVF K+LTYT RF K KN+ETI +VR
Sbjct: 7 EFENAETLLISEVYMLLEHRKAQNESAEEEQEFSEVFMKSLTYTNRFGKLKNKETIAAVR 66
Query: 149 NLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKRSLQY 206
+LL QKKLHKFE+A++ANLCPETPEEAKALIPSLE R E+EELR ILDDIQTKRSLQY
Sbjct: 67 SLLMQKKLHKFEIASLANLCPETPEEAKALIPSLEGRLEDEELRTILDDIQTKRSLQY 124
>gi|322792882|gb|EFZ16715.1| hypothetical protein SINV_12361 [Solenopsis invicta]
Length = 589
Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 97/118 (82%), Positives = 109/118 (92%)
Query: 89 EFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVR 148
EFENAETLLISEV+MLL+HRK QNE+AEEEQEFSEVF K+LTYT RF K KN+ETI++VR
Sbjct: 472 EFENAETLLISEVYMLLEHRKAQNESAEEEQEFSEVFMKSLTYTNRFGKLKNKETISAVR 531
Query: 149 NLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKRSLQY 206
+LL QKKLHKFE+A++ANLCPETPEEAKALIPSLE R E+EELR ILDDIQTKRSLQY
Sbjct: 532 SLLMQKKLHKFEIASLANLCPETPEEAKALIPSLEGRLEDEELRTILDDIQTKRSLQY 589
>gi|332022936|gb|EGI63202.1| Transcriptional adapter 2-alpha [Acromyrmex echinatior]
Length = 567
Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 96/118 (81%), Positives = 108/118 (91%)
Query: 89 EFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVR 148
+FENAETLLISEV+MLL+HRK QNE+AEEEQEFSEVF K+LTYT RF K KN+ETI +VR
Sbjct: 450 QFENAETLLISEVYMLLEHRKAQNESAEEEQEFSEVFMKSLTYTNRFGKLKNKETIAAVR 509
Query: 149 NLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKRSLQY 206
+LL QKKLHKFE+A++ANLCPETPEEAKALIPSLE R E+EELR ILDDIQTKRSLQY
Sbjct: 510 SLLMQKKLHKFEIASLANLCPETPEEAKALIPSLEGRLEDEELRTILDDIQTKRSLQY 567
>gi|157113945|ref|XP_001652151.1| histone acetyltransferase, putative [Aedes aegypti]
gi|108877515|gb|EAT41740.1| AAEL006661-PA [Aedes aegypti]
Length = 139
Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 109/131 (83%), Positives = 117/131 (89%)
Query: 76 VVEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERF 135
+VEEDA DLQFPKEFENAETLLISEVHMLL+HRK QNEN+EEEQEFSEVF KT YT F
Sbjct: 9 LVEEDAADLQFPKEFENAETLLISEVHMLLEHRKNQNENSEEEQEFSEVFLKTYNYTGMF 68
Query: 136 RKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQIL 195
RKFKN+ETI SVR+LL KKLHKFELAA+ NLCPE P+EAKALIPSLE RFE+EELRQIL
Sbjct: 69 RKFKNKETIASVRSLLMSKKLHKFELAALGNLCPEAPDEAKALIPSLEGRFEDEELRQIL 128
Query: 196 DDIQTKRSLQY 206
DDI TKRSLQY
Sbjct: 129 DDIGTKRSLQY 139
>gi|225713530|gb|ACO12611.1| DNA-directed RNA polymerase II subunit RPB4 [Lepeophtheirus
salmonis]
gi|290462181|gb|ADD24138.1| DNA-directed RNA polymerase II subunit RPB4 [Lepeophtheirus
salmonis]
gi|290562964|gb|ADD38876.1| DNA-directed RNA polymerase II subunit RPB4 [Lepeophtheirus
salmonis]
Length = 139
Score = 193 bits (490), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 94/131 (71%), Positives = 114/131 (87%), Gaps = 2/131 (1%)
Query: 77 VEEDAGDLQFPKEFENAET--LLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTER 134
+EEDA DLQFP EFE+ ET LLISEVH+LL+HR+ QN+ AEEEQEFSEVF KTL YT+R
Sbjct: 8 IEEDASDLQFPTEFEDPETKTLLISEVHILLEHRQKQNDAAEEEQEFSEVFMKTLNYTQR 67
Query: 135 FRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQI 194
F KF+N + I S+R++LTQKKLHKFELAA+ANLCP++PEEA++LIPSLE RF++EEL +
Sbjct: 68 FAKFRNLDNIASIRSVLTQKKLHKFELAALANLCPDSPEEARSLIPSLEGRFDDEELSVL 127
Query: 195 LDDIQTKRSLQ 205
LDDIQTKRS Q
Sbjct: 128 LDDIQTKRSFQ 138
>gi|354497575|ref|XP_003510895.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Cricetulus griseus]
Length = 158
Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 96/123 (78%), Positives = 105/123 (85%)
Query: 84 LQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRET 143
L EFE AETLL SEVHMLL+HRK QNE+AE+EQE SEVF KTL YT RF +FKNRET
Sbjct: 36 LALLAEFETAETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLNYTARFSRFKNRET 95
Query: 144 ITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKRS 203
I SVR+LL QKKLHKFELA +ANLCPET EE+KALIPSLE RFE+EEL+QILDDIQTKRS
Sbjct: 96 IASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGRFEDEELQQILDDIQTKRS 155
Query: 204 LQY 206
QY
Sbjct: 156 FQY 158
>gi|449272625|gb|EMC82454.1| DNA-directed RNA polymerase II subunit RPB4, partial [Columba
livia]
Length = 118
Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 95/118 (80%), Positives = 104/118 (88%)
Query: 89 EFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVR 148
EFE AETLL SEVHMLL+HRK QNE+AE+EQE SEVF KTL YT RF +FKNRETI SVR
Sbjct: 1 EFETAETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLNYTARFSRFKNRETIASVR 60
Query: 149 NLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKRSLQY 206
+LL QKKLHKFELA +ANLCPET EEAKAL+PSLE RFE+EEL+QILDDIQTKRS QY
Sbjct: 61 SLLLQKKLHKFELACLANLCPETAEEAKALVPSLEGRFEDEELQQILDDIQTKRSFQY 118
>gi|449679512|ref|XP_004209350.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like [Hydra
magnipapillata]
Length = 143
Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 94/129 (72%), Positives = 109/129 (84%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRK 137
EEDA +LQFPKEFE+AETLL SEV MLL+HRK QNE+ ++EQE S+VF KTL YT+RF +
Sbjct: 15 EEDATELQFPKEFESAETLLNSEVFMLLEHRKAQNESVDDEQEMSDVFMKTLNYTQRFSR 74
Query: 138 FKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDD 197
FKNRETI VR LL++KKLHKFELA IANLCPE EEA+ LIPSLE RF EEEL+QILD+
Sbjct: 75 FKNRETIAQVRGLLSKKKLHKFELACIANLCPENAEEARTLIPSLEGRFVEEELQQILDE 134
Query: 198 IQTKRSLQY 206
I+T RS QY
Sbjct: 135 IKTHRSFQY 143
>gi|195343319|ref|XP_002038245.1| GM10729 [Drosophila sechellia]
gi|194133266|gb|EDW54782.1| GM10729 [Drosophila sechellia]
Length = 146
Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 93/121 (76%), Positives = 103/121 (85%), Gaps = 3/121 (2%)
Query: 86 FPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETIT 145
FPK +++ LLISEVHMLL HRK QNE+A+EEQEFSEVF KT YT+ FRKFKN+ETI
Sbjct: 9 FPK---SSKALLISEVHMLLDHRKRQNESADEEQEFSEVFMKTYAYTDSFRKFKNKETIM 65
Query: 146 SVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKRSLQ 205
S R+ L QKKLHKFELAA+ NLCPE PEEAKALIPSLE RFE+EELRQILDDI TKRSLQ
Sbjct: 66 SARSFLMQKKLHKFELAALGNLCPEAPEEAKALIPSLEGRFEDEELRQILDDIGTKRSLQ 125
Query: 206 Y 206
Y
Sbjct: 126 Y 126
>gi|195450000|ref|XP_002072320.1| GK22783 [Drosophila willistoni]
gi|194168405|gb|EDW83306.1| GK22783 [Drosophila willistoni]
Length = 116
Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 95/118 (80%), Positives = 102/118 (86%), Gaps = 4/118 (3%)
Query: 89 EFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVR 148
EFE+AETLLISEVHMLL HRK QNE+A+EEQEFSEVF KT YT+ FRKFKN+ETI
Sbjct: 3 EFESAETLLISEVHMLLDHRKRQNESADEEQEFSEVFMKTYAYTDSFRKFKNKETII--- 59
Query: 149 NLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKRSLQY 206
LL QKKLHKFELAA+ NLCPE PEEAKALIPSLE RFE+EELRQILDDI TKRSLQY
Sbjct: 60 -LLMQKKLHKFELAALGNLCPEAPEEAKALIPSLEGRFEDEELRQILDDIGTKRSLQY 116
>gi|355712725|gb|AES04445.1| polymerase II polypeptide D [Mustela putorius furo]
Length = 117
Score = 186 bits (472), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 94/117 (80%), Positives = 103/117 (88%)
Query: 89 EFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVR 148
EFE AETLL SEVHMLL+HRK QNE+AE+EQE SEVF KTL YT RF +FKNRETI SVR
Sbjct: 1 EFETAETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLNYTARFSRFKNRETIASVR 60
Query: 149 NLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKRSLQ 205
+LL QKKLHKFELA +ANLCPET EE+KALIPSLE RFE+EEL+QILDDIQTKRS Q
Sbjct: 61 SLLLQKKLHKFELACLANLCPETAEESKALIPSLEGRFEDEELQQILDDIQTKRSFQ 117
>gi|158302373|ref|XP_321930.4| AGAP001228-PA [Anopheles gambiae str. PEST]
gi|157012920|gb|EAA01792.4| AGAP001228-PA [Anopheles gambiae str. PEST]
Length = 161
Score = 186 bits (471), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 106/153 (69%), Positives = 119/153 (77%), Gaps = 22/153 (14%)
Query: 76 VVEEDAGDLQFPK----------------------EFENAETLLISEVHMLLQHRKTQNE 113
+VEEDA DLQFPK EFE+AETLLISEVHMLL+HRK QNE
Sbjct: 9 MVEEDAADLQFPKGNACSIASFLRKIVLTRWRLFTEFESAETLLISEVHMLLEHRKNQNE 68
Query: 114 NAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPE 173
++EEEQEFSEVF KT TYT FRKF+N+ETI SVR+LL QKKLHKFELAA+ NLCP +PE
Sbjct: 69 SSEEEQEFSEVFHKTYTYTNEFRKFRNKETIASVRSLLMQKKLHKFELAALGNLCPASPE 128
Query: 174 EAKALIPSLECRFEEEELRQILDDIQTKRSLQY 206
EAKALIPSLE RFE++EL+QILDDI TKRSLQY
Sbjct: 129 EAKALIPSLEGRFEDDELQQILDDIGTKRSLQY 161
>gi|126320947|ref|XP_001366375.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Monodelphis domestica]
gi|126320951|ref|XP_001366486.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Monodelphis domestica]
gi|126320955|ref|XP_001366545.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Monodelphis domestica]
gi|126320959|ref|XP_001366594.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Monodelphis domestica]
Length = 142
Score = 182 bits (463), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 89/130 (68%), Positives = 106/130 (81%)
Query: 77 VEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFR 136
VEE+A L FP+EFE A+TLL SEVHMLL+HRK Q+E+ ++ +E VF KTL Y RF
Sbjct: 13 VEEEASQLVFPREFETAQTLLNSEVHMLLEHRKQQHESGQDARELPVVFWKTLDYAARFS 72
Query: 137 KFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
+F+NRETI SVR LL QKKLHKFELAA+ANLCPET EEAKALIPSL R E+E+L+++LD
Sbjct: 73 RFQNRETIASVRGLLLQKKLHKFELAALANLCPETAEEAKALIPSLAGRLEDEDLQEVLD 132
Query: 197 DIQTKRSLQY 206
DIQTKRS QY
Sbjct: 133 DIQTKRSFQY 142
>gi|126320949|ref|XP_001366431.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Monodelphis domestica]
Length = 142
Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 88/130 (67%), Positives = 106/130 (81%)
Query: 77 VEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFR 136
VEE+A L FP+EFE A+TLL SEVHMLL+HRK Q+E+ ++ +E VF KTL Y RF
Sbjct: 13 VEEEASQLVFPREFETAQTLLNSEVHMLLEHRKQQHESGQDARELPVVFWKTLDYAARFS 72
Query: 137 KFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
+F+NRETI SVR LL QKKLHKFE+AA+ANLCPET EEAKALIPSL R E+E+L+++LD
Sbjct: 73 RFQNRETIASVRGLLLQKKLHKFEVAALANLCPETAEEAKALIPSLAGRLEDEDLQEVLD 132
Query: 197 DIQTKRSLQY 206
DIQTKRS QY
Sbjct: 133 DIQTKRSFQY 142
>gi|116488104|gb|ABJ98634.1| RNA polymerase II subunit D [Scophthalmus maximus]
Length = 129
Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 93/127 (73%), Positives = 103/127 (81%), Gaps = 2/127 (1%)
Query: 65 GYIIMTHVLDQVVEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEV 124
G HV D EEDA L FPKEFEN+ETLL SEVHMLL+HRK QNE+AE+EQE SEV
Sbjct: 5 GGAAPPHVAD--AEEDASQLLFPKEFENSETLLNSEVHMLLEHRKQQNESAEDEQELSEV 62
Query: 125 FQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLEC 184
F KTL YT RF +FKNRETIT+VR+LL QKKLHKFELA++ANLCPE EEAKAL PSLE
Sbjct: 63 FMKTLNYTARFSRFKNRETITAVRSLLLQKKLHKFELASMANLCPEAAEEAKALTPSLEG 122
Query: 185 RFEEEEL 191
RFE+EEL
Sbjct: 123 RFEDEEL 129
>gi|126320937|ref|XP_001366148.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Monodelphis domestica]
Length = 142
Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 88/130 (67%), Positives = 105/130 (80%)
Query: 77 VEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFR 136
VE +A L FP+EFE A+TLL SEVHMLL+HRK Q+E+ ++ +E VF KTL Y RF
Sbjct: 13 VEGEASQLVFPREFETAQTLLNSEVHMLLEHRKQQHESGQDARELPVVFWKTLDYAARFS 72
Query: 137 KFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
+F+NRETI SVR LL QKKLHKFELAA+ANLCPET EEAKALIPSL R E+E+L+++LD
Sbjct: 73 RFQNRETIASVRGLLLQKKLHKFELAALANLCPETAEEAKALIPSLAGRLEDEDLQEVLD 132
Query: 197 DIQTKRSLQY 206
DIQTKRS QY
Sbjct: 133 DIQTKRSFQY 142
>gi|126320933|ref|XP_001366024.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Monodelphis domestica]
gi|126320939|ref|XP_001366209.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Monodelphis domestica]
gi|126320945|ref|XP_001366315.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Monodelphis domestica]
Length = 142
Score = 180 bits (457), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 88/130 (67%), Positives = 105/130 (80%)
Query: 77 VEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFR 136
VEE+A L FP+EFE A+TLL SEVHMLL+HRK Q+E+ ++ +E VF KTL Y RF
Sbjct: 13 VEEEASQLVFPREFETAQTLLNSEVHMLLEHRKQQHESGQDARELPVVFWKTLDYAARFS 72
Query: 137 KFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
+F+NRETI VR LL QKKLHKFELAA+ANLCPET EEAKALIPSL R E+E+L+++LD
Sbjct: 73 RFQNRETIARVRGLLLQKKLHKFELAALANLCPETAEEAKALIPSLAGRLEDEDLQEVLD 132
Query: 197 DIQTKRSLQY 206
DIQTKRS QY
Sbjct: 133 DIQTKRSFQY 142
>gi|126320935|ref|XP_001366087.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Monodelphis domestica]
Length = 142
Score = 180 bits (456), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 88/130 (67%), Positives = 105/130 (80%)
Query: 77 VEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFR 136
VEE+A L FP+EFE A+TLL SEVHMLL+HRK Q+E+ ++ +E VF KTL Y RF
Sbjct: 13 VEEEASQLVFPREFETAQTLLNSEVHMLLEHRKQQHESGQDARELPVVFWKTLDYAARFS 72
Query: 137 KFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
+F+NRETI SVR LL QKKLHKF LAA+ANLCPET EEAKALIPSL R E+E+L+++LD
Sbjct: 73 RFQNRETIASVRGLLLQKKLHKFVLAALANLCPETAEEAKALIPSLAGRLEDEDLQEVLD 132
Query: 197 DIQTKRSLQY 206
DIQTKRS QY
Sbjct: 133 DIQTKRSFQY 142
>gi|126320943|ref|XP_001366258.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Monodelphis domestica]
Length = 142
Score = 179 bits (453), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 88/130 (67%), Positives = 105/130 (80%)
Query: 77 VEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFR 136
VEE+A L FP+EFE A+TLL SEVHMLL+HRK Q+E+ ++ + VF KTL Y RF
Sbjct: 13 VEEEALQLVFPREFETAQTLLNSEVHMLLEHRKQQHESGQDARGLPVVFWKTLDYAARFS 72
Query: 137 KFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
+F+NRETI SVR LL QKKLHKFELAA+ANLCPET EEAKALIPSL R E+E+L+++LD
Sbjct: 73 RFQNRETIASVRGLLLQKKLHKFELAALANLCPETAEEAKALIPSLAGRLEDEDLQEVLD 132
Query: 197 DIQTKRSLQY 206
DIQTKRS QY
Sbjct: 133 DIQTKRSFQY 142
>gi|156383638|ref|XP_001632940.1| predicted protein [Nematostella vectensis]
gi|156220003|gb|EDO40877.1| predicted protein [Nematostella vectensis]
Length = 138
Score = 178 bits (451), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 97/129 (75%), Positives = 115/129 (89%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRK 137
EEDA +LQFPKEFE+AE+LL SEV+MLL+HRKTQNE+AEEEQE SEVF KTL YT++F +
Sbjct: 10 EEDATELQFPKEFESAESLLNSEVYMLLEHRKTQNESAEEEQELSEVFMKTLGYTQKFSR 69
Query: 138 FKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDD 197
+KNRETI VR+LL +KKLHKFELA +ANLCPET EEAKALIPSLE RFE+++L+Q+LDD
Sbjct: 70 YKNRETIAQVRSLLGKKKLHKFELACLANLCPETAEEAKALIPSLEGRFEDDDLQQLLDD 129
Query: 198 IQTKRSLQY 206
IQT RS QY
Sbjct: 130 IQTHRSFQY 138
>gi|291391381|ref|XP_002712436.1| PREDICTED: DNA directed RNA polymerase II polypeptide D
[Oryctolagus cuniculus]
Length = 129
Score = 178 bits (451), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 94/130 (72%), Positives = 102/130 (78%), Gaps = 13/130 (10%)
Query: 77 VEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFR 136
VEEDA L FPKEFE AETLL SEVHMLL+HRK QNE+AE+EQE SEVF KTLTYT RF
Sbjct: 13 VEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLTYTARFS 72
Query: 137 KFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
+FKNRETI SVR+LL QKKLHKFELA +ANLC LE RFE+EEL+QILD
Sbjct: 73 RFKNRETIASVRSLLLQKKLHKFELACLANLC-------------LEGRFEDEELQQILD 119
Query: 197 DIQTKRSLQY 206
DIQTKRS QY
Sbjct: 120 DIQTKRSFQY 129
>gi|194900250|ref|XP_001979670.1| GG16596 [Drosophila erecta]
gi|195036818|ref|XP_001989865.1| GH19030 [Drosophila grimshawi]
gi|195110591|ref|XP_001999863.1| GI22842 [Drosophila mojavensis]
gi|195392503|ref|XP_002054897.1| GJ24701 [Drosophila virilis]
gi|195497583|ref|XP_002096162.1| GE25223 [Drosophila yakuba]
gi|190651373|gb|EDV48628.1| GG16596 [Drosophila erecta]
gi|193894061|gb|EDV92927.1| GH19030 [Drosophila grimshawi]
gi|193916457|gb|EDW15324.1| GI22842 [Drosophila mojavensis]
gi|194152983|gb|EDW68417.1| GJ24701 [Drosophila virilis]
gi|194182263|gb|EDW95874.1| GE25223 [Drosophila yakuba]
Length = 104
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 85/104 (81%), Positives = 92/104 (88%)
Query: 103 MLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELA 162
MLL HRK QNE+A+EEQEFSEVF KT YT+ FRKFKN+ETI SVR+LL QKKLHKFELA
Sbjct: 1 MLLDHRKRQNESADEEQEFSEVFMKTYAYTDSFRKFKNKETIMSVRSLLMQKKLHKFELA 60
Query: 163 AIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKRSLQY 206
A+ NLCPE PEEAKALIPSLE RFE+EELRQILDDI TKRSLQY
Sbjct: 61 ALGNLCPEAPEEAKALIPSLEGRFEDEELRQILDDIGTKRSLQY 104
>gi|345315614|ref|XP_001517684.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Ornithorhynchus anatinus]
Length = 104
Score = 170 bits (430), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 84/104 (80%), Positives = 92/104 (88%)
Query: 103 MLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELA 162
MLL+HRK QNE+AE+EQE SEVF KTL YT RF +FKNRETI SVR+LL QKKLHKFELA
Sbjct: 1 MLLEHRKQQNESAEDEQELSEVFMKTLNYTARFSRFKNRETIASVRSLLLQKKLHKFELA 60
Query: 163 AIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKRSLQY 206
+ANLCPET EEAKALIPSLE RFE+EEL+QILDDIQTKRS QY
Sbjct: 61 CLANLCPETAEEAKALIPSLEGRFEDEELQQILDDIQTKRSFQY 104
>gi|28076931|ref|NP_081377.1| DNA-directed RNA polymerase II subunit RPB4 isoform 2 [Mus
musculus]
gi|338715739|ref|XP_001499044.3| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like [Equus
caballus]
gi|13435942|gb|AAH04810.1| Polymerase (RNA) II (DNA directed) polypeptide D [Mus musculus]
gi|344254896|gb|EGW11000.1| DNA-directed RNA polymerase II subunit RPB4 [Cricetulus griseus]
gi|432115789|gb|ELK36944.1| DNA-directed RNA polymerase II subunit RPB4 [Myotis davidii]
Length = 104
Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 83/104 (79%), Positives = 92/104 (88%)
Query: 103 MLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELA 162
MLL+HRK QNE+AE+EQE SEVF KTL YT RF +FKNRETI SVR+LL QKKLHKFELA
Sbjct: 1 MLLEHRKQQNESAEDEQELSEVFMKTLNYTARFSRFKNRETIASVRSLLLQKKLHKFELA 60
Query: 163 AIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKRSLQY 206
+ANLCPET EE+KALIPSLE RFE+EEL+QILDDIQTKRS QY
Sbjct: 61 CLANLCPETAEESKALIPSLEGRFEDEELQQILDDIQTKRSFQY 104
>gi|47216495|emb|CAG02146.1| unnamed protein product [Tetraodon nigroviridis]
Length = 145
Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 83/104 (79%), Positives = 91/104 (87%)
Query: 77 VEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFR 136
VEEDA L FPKEFENAETLL SEVHMLL+HRK QNE+AE+EQE SEVF KTL YT RF
Sbjct: 13 VEEDASQLLFPKEFENAETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLNYTARFS 72
Query: 137 KFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIP 180
+FKNRETIT+VR+LL QKKLHKFELA++ANLCPE EEAKALIP
Sbjct: 73 RFKNRETITAVRSLLLQKKLHKFELASLANLCPEAAEEAKALIP 116
>gi|72150941|ref|XP_795859.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Strongylocentrotus purpuratus]
Length = 142
Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 96/131 (73%), Positives = 109/131 (83%), Gaps = 2/131 (1%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRK 137
EEDA +L+FPK FE AETLLISEV MLLQHRK QNE+ EEEQE SEVF KTL YT RF +
Sbjct: 12 EEDASELKFPKVFEQAETLLISEVQMLLQHRKQQNESQEEEQELSEVFMKTLNYTGRFSR 71
Query: 138 FKNRETITSVRNLLTQK--KLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQIL 195
FKNRETI VR LL Q+ KLHKFELA +ANLCPET EEAKALIPSLE RFE++EL ++L
Sbjct: 72 FKNRETIGDVRGLLQQQQPKLHKFELALLANLCPETAEEAKALIPSLEGRFEDDELTEVL 131
Query: 196 DDIQTKRSLQY 206
+++QTKRS QY
Sbjct: 132 ENMQTKRSFQY 142
>gi|313219963|emb|CBY43664.1| unnamed protein product [Oikopleura dioica]
gi|313232607|emb|CBY19277.1| unnamed protein product [Oikopleura dioica]
Length = 137
Score = 163 bits (412), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 78/128 (60%), Positives = 101/128 (78%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRK 137
EEDA LQFPKEF+ TL+ SEV +LL+HR +E ++ E SEVFQKTL Y +RF K
Sbjct: 9 EEDAAQLQFPKEFQETTTLMNSEVKVLLEHRMKNDEGRRDDVELSEVFQKTLDYCKRFSK 68
Query: 138 FKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDD 197
FKN++ I +VR +LT K+LH+FE+AA+ANLCPET +EAKALIPS+E RF +EEL+Q+LDD
Sbjct: 69 FKNQDVIVNVRTMLTSKRLHRFEIAALANLCPETADEAKALIPSMEGRFPDEELQQMLDD 128
Query: 198 IQTKRSLQ 205
+ T+RS Q
Sbjct: 129 MATQRSFQ 136
>gi|170583187|ref|XP_001896469.1| DNA-directed RNA polymerase II 16 kDa polypeptide [Brugia malayi]
gi|158596317|gb|EDP34682.1| DNA-directed RNA polymerase II 16 kDa polypeptide, putative [Brugia
malayi]
Length = 138
Score = 162 bits (411), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 80/132 (60%), Positives = 102/132 (77%)
Query: 74 DQVVEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTE 133
D +EDA +L+FPKEFE A+TLL SEV++LL+HR+ Q+E EE E S+VF KTL YT
Sbjct: 7 DDTTDEDATELKFPKEFEQADTLLTSEVYLLLEHRRQQSEQKEEIDEMSDVFVKTLNYTR 66
Query: 134 RFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQ 193
R +FKNRETI +VR LL K LHKFE+A IANLCPET EEAKALIPSLE + E++EL +
Sbjct: 67 RMARFKNRETIRAVRTLLATKPLHKFEVAQIANLCPETSEEAKALIPSLENKMEDDELDE 126
Query: 194 ILDDIQTKRSLQ 205
+L D+ +K++ Q
Sbjct: 127 VLKDLHSKKTFQ 138
>gi|312080440|ref|XP_003142600.1| DNA-directed RNA polymerase II polypeptide [Loa loa]
gi|307762235|gb|EFO21469.1| DNA-directed RNA polymerase II polypeptide [Loa loa]
Length = 138
Score = 162 bits (411), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 80/132 (60%), Positives = 102/132 (77%)
Query: 74 DQVVEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTE 133
D +EDA +L+FPKEFE A+TLL SEV++LL+HR+ Q+E EE E S+VF KTL YT
Sbjct: 7 DDTTDEDATELKFPKEFEQADTLLTSEVYLLLEHRRQQSEQKEEIDEMSDVFVKTLNYTR 66
Query: 134 RFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQ 193
R +FKNRETI +VR LL K LHKFE+A IANLCPET EEAKALIPSLE + E++EL +
Sbjct: 67 RMARFKNRETIRAVRTLLATKPLHKFEVAQIANLCPETSEEAKALIPSLENKMEDDELDE 126
Query: 194 ILDDIQTKRSLQ 205
+L D+ +K++ Q
Sbjct: 127 VLKDLHSKKTFQ 138
>gi|256084764|ref|XP_002578596.1| DNA-directed RNA polymerase II [Schistosoma mansoni]
gi|353232909|emb|CCD80264.1| putative dna-directed RNA polymerase II [Schistosoma mansoni]
Length = 140
Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 82/128 (64%), Positives = 103/128 (80%), Gaps = 2/128 (1%)
Query: 80 DAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAE-EEQEFSEVFQKTLTYTERFRKF 138
DA +L+F K+FENA+TL+++EV +LL+HRK QNENA E E S VF KTL Y +F KF
Sbjct: 12 DASELKFSKDFENADTLMLAEVKILLEHRKEQNENATIHELELSPVFTKTLNYVTQFSKF 71
Query: 139 KNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLEC-RFEEEELRQILDD 197
NRETI SVRNLLTQK+ H FELA++ANL P+T EE+KAL+PSL+ RF EEEL+Q+LD+
Sbjct: 72 NNRETIESVRNLLTQKRFHNFELASLANLLPDTAEESKALLPSLDSPRFTEEELQQLLDE 131
Query: 198 IQTKRSLQ 205
IQ+KRS Q
Sbjct: 132 IQSKRSFQ 139
>gi|358339513|dbj|GAA47564.1| DNA-directed RNA polymerase II subunit RPB4 [Clonorchis sinensis]
Length = 140
Score = 159 bits (403), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 82/128 (64%), Positives = 103/128 (80%), Gaps = 2/128 (1%)
Query: 80 DAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAE-EEQEFSEVFQKTLTYTERFRKF 138
DA +L+FPKEFENA+TL++SEV +LL+HRK QNE+A E E S+ F KTL Y + +F
Sbjct: 12 DACELKFPKEFENADTLMLSEVKLLLEHRKEQNESATVHELELSQAFTKTLNYATQLSRF 71
Query: 139 KNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLE-CRFEEEELRQILDD 197
NRETI SVR+LL+QK+ H FELAAIANL P+T EEAKALIPSL+ RF +EEL+Q+LD+
Sbjct: 72 NNRETIESVRSLLSQKRFHGFELAAIANLLPDTAEEAKALIPSLDSSRFTDEELQQLLDE 131
Query: 198 IQTKRSLQ 205
IQ+KRS Q
Sbjct: 132 IQSKRSFQ 139
>gi|308503128|ref|XP_003113748.1| CRE-RPB-4 protein [Caenorhabditis remanei]
gi|308263707|gb|EFP07660.1| CRE-RPB-4 protein [Caenorhabditis remanei]
Length = 144
Score = 153 bits (386), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 76/134 (56%), Positives = 100/134 (74%), Gaps = 2/134 (1%)
Query: 74 DQVVEEDAGDLQFPKEFEN--AETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTY 131
D VEEDA + +FPKEFE + LL +EV++LL+HR+ NE+ +E +E SEVF KTL Y
Sbjct: 11 DGQVEEDAAECKFPKEFETTTCDALLTAEVYLLLEHRRQSNESKDEIEEMSEVFIKTLNY 70
Query: 132 TERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEEL 191
R +FKNRETI +VR + ++K LHKFE+A IANLCPE EEAKAL+PSLE + EE EL
Sbjct: 71 ARRMSRFKNRETIRAVRAIFSEKHLHKFEVAQIANLCPENAEEAKALVPSLENKIEESEL 130
Query: 192 RQILDDIQTKRSLQ 205
++L D+Q+KR+ Q
Sbjct: 131 EEVLKDLQSKRTFQ 144
>gi|268562714|ref|XP_002646754.1| C. briggsae CBR-RPB-4 protein [Caenorhabditis briggsae]
Length = 148
Score = 152 bits (385), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 76/134 (56%), Positives = 99/134 (73%), Gaps = 2/134 (1%)
Query: 74 DQVVEEDAGDLQFPKEFE--NAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTY 131
D VEEDA + +FPKEFE + LL +EV++LL+HR+ NE +E +E SEVF KTL Y
Sbjct: 15 DGQVEEDAAECKFPKEFELNTCDALLTAEVYLLLEHRRQSNETKDEIEEMSEVFIKTLNY 74
Query: 132 TERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEEL 191
R +FKNRETI +VR + ++K LHKFE+A IANLCPE EEAKAL+PSLE + EE EL
Sbjct: 75 ARRMSRFKNRETIRAVRAIFSEKHLHKFEVAQIANLCPENAEEAKALVPSLENKIEESEL 134
Query: 192 RQILDDIQTKRSLQ 205
++L D+Q+KR+ Q
Sbjct: 135 EEVLKDLQSKRTFQ 148
>gi|193204561|ref|NP_495544.2| Protein RPB-4 [Caenorhabditis elegans]
gi|351021285|emb|CCD63552.1| Protein RPB-4 [Caenorhabditis elegans]
Length = 144
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 75/134 (55%), Positives = 100/134 (74%), Gaps = 2/134 (1%)
Query: 74 DQVVEEDAGDLQFPKEFEN--AETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTY 131
D VEEDA + +FPKEFE + LL +EV++LL+HR+ +E+ +E +E SEVF KTL Y
Sbjct: 11 DGQVEEDAAECKFPKEFETTTCDALLTAEVYLLLEHRRQSSESKDEIEEMSEVFIKTLNY 70
Query: 132 TERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEEL 191
R +FKNRETI +VR + ++K LHKFE+A IANLCPE EEAKAL+PSLE + EE EL
Sbjct: 71 ARRMSRFKNRETIRAVRAIFSEKHLHKFEVAQIANLCPENAEEAKALVPSLENKIEESEL 130
Query: 192 RQILDDIQTKRSLQ 205
++L D+Q+KR+ Q
Sbjct: 131 EEVLKDLQSKRTFQ 144
>gi|340376921|ref|XP_003386979.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Amphimedon queenslandica]
Length = 139
Score = 145 bits (367), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 67/130 (51%), Positives = 100/130 (76%)
Query: 77 VEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFR 136
++EDA +L+F K+F+ A+ LL+SEV MLL+HRK Q+E+ +++Q+ SEVF KTL Y + F
Sbjct: 10 LQEDATELRFGKDFDTADALLVSEVKMLLEHRKAQHESQDDDQDLSEVFTKTLDYCQTFS 69
Query: 137 KFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
K+ +RETI+++R L + KLHKFE+A +ANL P +EAK L+PSL+ RF++ EL ++LD
Sbjct: 70 KYNSRETISAIRGALQKHKLHKFEVACLANLAPADADEAKTLLPSLQGRFDDLELNELLD 129
Query: 197 DIQTKRSLQY 206
DI+T + QY
Sbjct: 130 DIRTHMNYQY 139
>gi|7503310|pir||T34046 hypothetical protein F43E2.1 - Caenorhabditis elegans
Length = 580
Score = 139 bits (351), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 70/126 (55%), Positives = 92/126 (73%), Gaps = 2/126 (1%)
Query: 74 DQVVEEDAGDLQFPKEFENA--ETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTY 131
D VEEDA + +FPKEFE + LL +EV++LL+HR+ +E+ +E +E SEVF KTL Y
Sbjct: 11 DGQVEEDAAECKFPKEFETTTCDALLTAEVYLLLEHRRQSSESKDEIEEMSEVFIKTLNY 70
Query: 132 TERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEEL 191
R +FKNRETI +VR + ++K LHKFE+A IANLCPE EEAKAL+PSLE + EE EL
Sbjct: 71 ARRMSRFKNRETIRAVRAIFSEKHLHKFEVAQIANLCPENAEEAKALVPSLENKIEESEL 130
Query: 192 RQILDD 197
++ D
Sbjct: 131 EELQGD 136
>gi|341899791|gb|EGT55726.1| hypothetical protein CAEBREN_32834 [Caenorhabditis brenneri]
Length = 144
Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 77/134 (57%), Positives = 100/134 (74%), Gaps = 2/134 (1%)
Query: 74 DQVVEEDAGDLQFPKEFEN--AETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTY 131
D VEEDA + +FPKEFE + LL +EV++LL+HR+ +EN +E +E SEVF KTL Y
Sbjct: 11 DGHVEEDAAECKFPKEFETNTCDALLTAEVYLLLEHRRQSSENKDEIEEMSEVFIKTLNY 70
Query: 132 TERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEEL 191
R +FKNRETI +VR + ++K LHKFE+A IANLCPE EEAKAL+PSLE + EE EL
Sbjct: 71 ARRMSRFKNRETIRAVRAIFSEKHLHKFEIAQIANLCPENAEEAKALVPSLENKIEESEL 130
Query: 192 RQILDDIQTKRSLQ 205
+IL D+Q+KR+ Q
Sbjct: 131 EEILKDLQSKRTFQ 144
>gi|397516150|ref|XP_003828299.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Pan
paniscus]
gi|403280272|ref|XP_003931649.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Saimiri
boliviensis boliviensis]
Length = 110
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/130 (60%), Positives = 84/130 (64%), Gaps = 32/130 (24%)
Query: 77 VEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFR 136
VEEDA L FPKEFE AETLL SEVHMLL+HRK QNE+AE+EQE SEVF KTL YT RF
Sbjct: 13 VEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLNYTARFS 72
Query: 137 KFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
+FKNRETI SVR SLE RFE+EEL+QILD
Sbjct: 73 RFKNRETIASVR--------------------------------SLEGRFEDEELQQILD 100
Query: 197 DIQTKRSLQY 206
DIQTKRS QY
Sbjct: 101 DIQTKRSFQY 110
>gi|196007958|ref|XP_002113845.1| hypothetical protein TRIADDRAFT_26370 [Trichoplax adhaerens]
gi|190584249|gb|EDV24319.1| hypothetical protein TRIADDRAFT_26370 [Trichoplax adhaerens]
Length = 106
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 64/105 (60%), Positives = 86/105 (81%), Gaps = 2/105 (1%)
Query: 103 MLLQHRKTQNENAE--EEQEFSEVFQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFE 160
MLL+HRK QNE E E+QE SEVFQKTL++T+RF KFKN+ETI +VR+LL + HKFE
Sbjct: 1 MLLEHRKAQNEADELDEDQEMSEVFQKTLSHTKRFSKFKNKETIAAVRSLLNKHNFHKFE 60
Query: 161 LAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKRSLQ 205
LA++ANLCPET +EAK+L+PSL ++++EE++QILDDI+ +Q
Sbjct: 61 LASLANLCPETSDEAKSLMPSLNGKYDDEEMQQILDDIKQHIGIQ 105
>gi|402586662|gb|EJW80599.1| RNA polymerase II subunit protein 4, partial [Wuchereria bancrofti]
Length = 129
Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 66/105 (62%), Positives = 80/105 (76%)
Query: 74 DQVVEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTE 133
D +EDA +L+FPKEFE A+TLL SEV++LL+HR+ Q+E EE E S+VF KTL YT
Sbjct: 22 DDTTDEDATELKFPKEFEQADTLLTSEVYLLLEHRRQQSEQKEEIDEMSDVFVKTLNYTR 81
Query: 134 RFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKAL 178
R +FKNRETI +VR LL K LHKFE+A IANLCPET EEAK+
Sbjct: 82 RMARFKNRETIRAVRTLLATKPLHKFEVAQIANLCPETSEEAKSF 126
>gi|440804477|gb|ELR25354.1| DNAdirected RNA polymerase II subunit rpb4, putative [Acanthamoeba
castellanii str. Neff]
Length = 135
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/126 (51%), Positives = 92/126 (73%), Gaps = 1/126 (0%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLLQHRK-TQNENAEEEQEFSEVFQKTLTYTERFR 136
EEDA L+ +F+NA LL SEV +LL+HR+ T E E E S VF KTL+Y +RF
Sbjct: 7 EEDASLLRLGLDFQNANCLLNSEVAILLEHRQQTAAVQEEGEAELSNVFLKTLSYVQRFS 66
Query: 137 KFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
++K + + VR+LLT+K+L +FE+AA++NLCPET EEAK+LIPSL RF++EEL+ +L+
Sbjct: 67 RYKTKAAVKEVRSLLTEKELEEFEIAALSNLCPETAEEAKSLIPSLAKRFDDEELQSVLN 126
Query: 197 DIQTKR 202
D+ + R
Sbjct: 127 DLASFR 132
>gi|390370008|ref|XP_003731750.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like,
partial [Strongylocentrotus purpuratus]
Length = 95
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/85 (70%), Positives = 70/85 (82%), Gaps = 2/85 (2%)
Query: 124 VFQKTLTYTERFRKFKNRETITSVRNLLTQK--KLHKFELAAIANLCPETPEEAKALIPS 181
VF KTL YT RF +FKNRETI VR LL Q+ KLHKFELA +ANLCPET EEAKALIPS
Sbjct: 11 VFMKTLNYTGRFSRFKNRETIGDVRGLLQQQQPKLHKFELALLANLCPETAEEAKALIPS 70
Query: 182 LECRFEEEELRQILDDIQTKRSLQY 206
LE RFE++EL ++L+++QTKRS QY
Sbjct: 71 LEGRFEDDELTEVLENMQTKRSFQY 95
>gi|330790380|ref|XP_003283275.1| RNA polymerase II core subunit [Dictyostelium purpureum]
gi|325086822|gb|EGC40206.1| RNA polymerase II core subunit [Dictyostelium purpureum]
Length = 138
Score = 116 bits (291), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 91/125 (72%), Gaps = 3/125 (2%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRK 137
EED L+FPK+ ++A+ LL SEV +LL+HRK +EN E EF++ F KTL Y E+F +
Sbjct: 14 EEDLSTLKFPKDLKDAKFLLNSEVAILLEHRKLGSEN--EGLEFTQTFHKTLAYAEKFSR 71
Query: 138 FKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDD 197
+KN+ +I VR L+++ L +F++A++ANLCPET +EAK+LIPSL+ +E+ L+ ILD+
Sbjct: 72 YKNKTSIKQVRAALSKQNLEEFQIASLANLCPETADEAKSLIPSLK-EMDEDALQAILDE 130
Query: 198 IQTKR 202
+ R
Sbjct: 131 LSNLR 135
>gi|334349213|ref|XP_001369289.2| PREDICTED: hypothetical protein LOC100015134 [Monodelphis
domestica]
Length = 186
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/73 (73%), Positives = 63/73 (86%)
Query: 134 RFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQ 193
+ + F+NRETI SVR LL QKKLHKFELAA+ANLCPET EEAKALIPSL R E+E+L++
Sbjct: 114 QIKSFQNRETIASVRGLLLQKKLHKFELAALANLCPETAEEAKALIPSLAGRLEDEDLQE 173
Query: 194 ILDDIQTKRSLQY 206
+LDDIQTKRS QY
Sbjct: 174 VLDDIQTKRSFQY 186
>gi|62822328|gb|AAY14877.1| unknown [Homo sapiens]
Length = 84
Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/72 (77%), Positives = 60/72 (83%)
Query: 77 VEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFR 136
VEEDA L FPKEFE AETLL SEVHMLL+HRK QNE+AE+EQE SEVF KTL YT RF
Sbjct: 13 VEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLNYTARFS 72
Query: 137 KFKNRETITSVR 148
+FKNRETI SVR
Sbjct: 73 RFKNRETIASVR 84
>gi|281202108|gb|EFA76313.1| RNA polymerase II core subunit [Polysphondylium pallidum PN500]
Length = 747
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/130 (46%), Positives = 88/130 (67%), Gaps = 7/130 (5%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRK 137
EED L+FPK+ +NA+ LL SEV +LL+ RK E A E EF + F KTL Y ERF +
Sbjct: 621 EEDLSLLKFPKDLKNAKFLLNSEVAILLECRK---EFATEGTEFPQTFHKTLAYAERFSR 677
Query: 138 FKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRF---EEEELRQI 194
+KN+ +I VR +L+++ L +FE+A +ANLCPE +EAK+LI SL+ RF +++ L+ I
Sbjct: 678 YKNKASIKQVRGVLSKQDLDEFEVACLANLCPENSDEAKSLIVSLK-RFQDTQDDTLQAI 736
Query: 195 LDDIQTKRSL 204
LD++ R
Sbjct: 737 LDELSNLRKF 746
>gi|328873268|gb|EGG21635.1| DNA-directed RNA polymerase II subunit 4 [Dictyostelium
fasciculatum]
Length = 138
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 87/125 (69%), Gaps = 3/125 (2%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRK 137
EED LQFPK+ + A+ LL SEV + L+ RK +E + EF + F KTL Y ERF +
Sbjct: 14 EEDLVTLQFPKDLQQAKFLLNSEVAIFLECRK--EFESENQTEFPQTFHKTLAYAERFSR 71
Query: 138 FKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDD 197
+KN+ +I VR L+++ LH+FE+A++ANLCPE +EAK+LI SL+ RF+++ ++ ILD+
Sbjct: 72 YKNKTSIKQVRAALSKQNLHEFEIASLANLCPENSDEAKSLIVSLK-RFDDDTIQAILDE 130
Query: 198 IQTKR 202
+ R
Sbjct: 131 LSNLR 135
>gi|328772120|gb|EGF82159.1| hypothetical protein BATDEDRAFT_86911 [Batrachochytrium
dendrobatidis JAM81]
Length = 138
Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 83/128 (64%), Gaps = 1/128 (0%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRK 137
EEDA +F EF++ + LLISEV +LL+ K + + S++ QKT+ Y ++F +
Sbjct: 12 EEDANLSKFGPEFQDVQCLLISEVRVLLEVAKDRKRKESGDGSISDIMQKTIDYCQQFSR 71
Query: 138 FKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDD 197
F N++T+ +RNL + H+FE+A +ANLC ET EEAK LIPSL + ++EL+ +L+D
Sbjct: 72 FTNKQTVKEIRNLFPDDQFHQFEMAQLANLCCETAEEAKVLIPSLSTK-HDDELQNLLND 130
Query: 198 IQTKRSLQ 205
+Q R Q
Sbjct: 131 LQALRKFQ 138
>gi|449682668|ref|XP_004210141.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like,
partial [Hydra magnipapillata]
Length = 86
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/71 (71%), Positives = 60/71 (84%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRK 137
EEDA +LQFPKEFE+AETLL SEV MLL+HRK QNE+ ++EQE S+VF KTL YT+RF +
Sbjct: 15 EEDATELQFPKEFESAETLLNSEVFMLLEHRKAQNESVDDEQEMSDVFMKTLNYTQRFSR 74
Query: 138 FKNRETITSVR 148
FKNRETI VR
Sbjct: 75 FKNRETIAQVR 85
>gi|66812112|ref|XP_640235.1| DNA-directed RNA polymerase II subunit 4 [Dictyostelium discoideum
AX4]
gi|74854885|sp|Q54S04.1|RPB4_DICDI RecName: Full=DNA-directed RNA polymerase II subunit rpb4;
Short=RNA polymerase II subunit B4; AltName:
Full=DNA-directed RNA polymerase II subunit D
gi|60468219|gb|EAL66229.1| DNA-directed RNA polymerase II subunit 4 [Dictyostelium discoideum
AX4]
Length = 155
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 89/140 (63%), Gaps = 16/140 (11%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEE---------------QEFS 122
EED L+FP++ ++A+ LL SEV +LL+HRK +E+ E +
Sbjct: 14 EEDLTTLKFPRDLKDAKFLLNSEVAILLEHRKGISESEGTEFPQNTLLIHLYYNSINDII 73
Query: 123 EVFQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSL 182
F KTL Y E+F ++KN+ +I VR L+++ L +FE+A++ANLCPE +EAK+LIPSL
Sbjct: 74 RTFHKTLAYAEKFSRYKNKTSIKQVRTALSKQNLEEFEIASLANLCPEISDEAKSLIPSL 133
Query: 183 ECRFEEEELRQILDDIQTKR 202
+ + E++EL+ ILD++ R
Sbjct: 134 K-KMEDDELQAILDELSNLR 152
>gi|350593475|ref|XP_003483693.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like [Sus
scrofa]
Length = 127
Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/66 (75%), Positives = 55/66 (83%)
Query: 141 RETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQT 200
R V +LL QKKLHKFELA +ANLCPET EE+KALIPSLE RFE+EEL+QILDDIQT
Sbjct: 62 RVQTAHVCSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGRFEDEELQQILDDIQT 121
Query: 201 KRSLQY 206
KRS QY
Sbjct: 122 KRSFQY 127
>gi|296204310|ref|XP_002749270.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Callithrix jacchus]
Length = 116
Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 48/58 (82%), Positives = 53/58 (91%)
Query: 149 NLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKRSLQY 206
+LL QKKLHKFELA +ANLCPET EE+KALIPSLE RFE+EEL+QILDDIQTKRS QY
Sbjct: 59 SLLLQKKLHKFELACLANLCPETAEESKALIPSLEGRFEDEELQQILDDIQTKRSFQY 116
>gi|168028875|ref|XP_001766952.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681694|gb|EDQ68118.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 142
Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 86/129 (66%), Gaps = 4/129 (3%)
Query: 76 VVEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEE--QEFSEVFQKTLTYTE 133
V EEDA +L+ ++F A+ L+ +EV ++LQ + Q + ++ + S+VF+++L Y
Sbjct: 9 VEEEDASELKLGEDFVKAKCLMNAEVALVLQRKYEQLQQLADDPSSQISQVFERSLQYVR 68
Query: 134 RFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSL--ECRFEEEEL 191
RF +++N + + VR +LT+ +LH+FE+ I NLCPET EEAKAL+PS+ R +EE++
Sbjct: 69 RFSRYQNPDAVKQVREVLTRNQLHEFEVCVIGNLCPETVEEAKALVPSITKRGRMDEEKI 128
Query: 192 RQILDDIQT 200
+L D+ T
Sbjct: 129 ETMLTDLAT 137
>gi|62420317|gb|AAX82034.1| unknown [Homo sapiens]
Length = 57
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/57 (84%), Positives = 52/57 (91%)
Query: 150 LLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKRSLQY 206
LL QKKLHKFELA +ANLCPET EE+KALIPSLE RFE+EEL+QILDDIQTKRS QY
Sbjct: 1 LLLQKKLHKFELACLANLCPETAEESKALIPSLEGRFEDEELQQILDDIQTKRSFQY 57
>gi|357144504|ref|XP_003573316.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Brachypodium distachyon]
Length = 141
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 85/129 (65%), Gaps = 8/129 (6%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQ-----NENAEEEQEFSEVFQKTLTYT 132
EE+A +L+ +EF A++L+ EV ++L+HR Q + + + S+VF+K+L Y
Sbjct: 6 EENAAELKIGEEFLKAKSLMNCEVAIILEHRYEQLQQMSDGGGDPSSQMSQVFEKSLGYV 65
Query: 133 ERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSL--ECRFE-EE 189
+RF ++KN + + VR L++ LH+FEL + NLCP+T +EAKAL+PSL RF+ +E
Sbjct: 66 KRFSRYKNPDAVRQVRETLSRYGLHEFELCTLGNLCPDTADEAKALVPSLVPGGRFDVDE 125
Query: 190 ELRQILDDI 198
+ ++L+D+
Sbjct: 126 RIDKMLNDL 134
>gi|395331653|gb|EJF64033.1| RNA polymerase II [Dichomitus squalens LYAD-421 SS1]
Length = 134
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 81/129 (62%), Gaps = 7/129 (5%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRK 137
EEDA L+ EF NA LLISEV LL+HR ++ + + V+ KTL Y + F K
Sbjct: 11 EEDASALRLGPEFNNAGCLLISEVRYLLEHRPSEKAAPD-----TAVYNKTLEYVKTFAK 65
Query: 138 FKNRETITSVRNLLTQKK-LHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
F E ++R L ++ L +FE+A IANLCP T EEAK+++PSL + ++++L+ +LD
Sbjct: 66 FDKPEAAAAIRETLRRESALTQFEIAQIANLCPVTAEEAKSIVPSL-VKIDDDKLQPLLD 124
Query: 197 DIQTKRSLQ 205
+IQT R Q
Sbjct: 125 EIQTMRKFQ 133
>gi|452825468|gb|EME32464.1| DNA-directed RNA polymerase II subunit D [Galdieria sulphuraria]
Length = 150
Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 81/128 (63%), Gaps = 5/128 (3%)
Query: 78 EEDAGDLQFPKEF--ENAETLLISEVHMLLQHRKTQNENAE--EEQEFSEVFQKTLTYTE 133
+EDA LQ ++F E A+ L ISEV +LL ++ + E +EFS VF+K L Y E
Sbjct: 20 QEDAATLQLGEDFSSEKAQPLTISEVAILLSRKRDMMRDLEGPRAEEFSSVFKKFLEYVE 79
Query: 134 RFRKFKNRETITSVRNLLTQ-KKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELR 192
RF ++K E+ T+VRNLL + + L FE+A +ANLCP EEAK IPSL+ + ++ L
Sbjct: 80 RFDRYKGLESATNVRNLLQRYESLDPFEMACLANLCPADAEEAKTTIPSLKHKIDDSSLN 139
Query: 193 QILDDIQT 200
Q+L D+ +
Sbjct: 140 QLLQDLAS 147
>gi|392565043|gb|EIW58220.1| RNA polymerase II [Trametes versicolor FP-101664 SS1]
Length = 134
Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 82/129 (63%), Gaps = 7/129 (5%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRK 137
+EDA L+ EF NA LLISEV LL+HR ++ + + V++KTL Y + F K
Sbjct: 11 DEDASSLRLGPEFNNAGCLLISEVRYLLEHRPSEKAAPD-----TSVYKKTLEYVKTFAK 65
Query: 138 FKNRETITSVRNLLTQKK-LHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
F E ++R L ++ L +FE+A IANLCP T EE+K++IPSL + ++++L+ +LD
Sbjct: 66 FDKPEAAAAIRETLRRESDLTQFEIAQIANLCPVTAEESKSIIPSL-VKVDDDKLQPLLD 124
Query: 197 DIQTKRSLQ 205
+IQT R Q
Sbjct: 125 EIQTMRKFQ 133
>gi|169849315|ref|XP_001831361.1| hypothetical protein CC1G_00908 [Coprinopsis cinerea okayama7#130]
gi|116507629|gb|EAU90524.1| hypothetical protein CC1G_00908 [Coprinopsis cinerea okayama7#130]
Length = 134
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 82/131 (62%), Gaps = 9/131 (6%)
Query: 76 VVEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERF 135
V EEDA L+ EF NA LLISEV LL++R E++ + V+ KTL Y + F
Sbjct: 11 VDEEDAATLKLGPEFNNAGCLLISEVKYLLENR-------EKDAPDTAVYNKTLDYVKTF 63
Query: 136 RKFKNRETITSVRNLLTQK-KLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQI 194
KF ++ ++VR L ++ L +FE A IANLCP + EEAK++IPSL + +++ L+ +
Sbjct: 64 AKFNTTDSASAVRETLRREPALTQFETAQIANLCPASAEEAKSIIPSL-VKIDDDRLQAL 122
Query: 195 LDDIQTKRSLQ 205
+D+IQT R Q
Sbjct: 123 VDEIQTMRKFQ 133
>gi|353242845|emb|CCA74453.1| hypothetical protein PIIN_08406 [Piriformospora indica DSM 11827]
Length = 135
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 79/129 (61%), Gaps = 8/129 (6%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRK 137
EEDA L+ EF NA LLISEV +LL+ ++ + S VF KT+ Y F K
Sbjct: 13 EEDAATLKLGAEFNNAGCLLISEVKILLKEKEGKPGVD------SPVFNKTVEYVNMFSK 66
Query: 138 FKNRETITSVRNLLT-QKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
F +TI VR L Q L +FE A +ANLCP T EEAK++IPSL +++++EL+ +LD
Sbjct: 67 FSTEDTIGLVRATLRRQANLTQFETAQLANLCPSTAEEAKSIIPSL-AKYDDDELQPLLD 125
Query: 197 DIQTKRSLQ 205
++Q+ R Q
Sbjct: 126 ELQSMRRFQ 134
>gi|302687374|ref|XP_003033367.1| hypothetical protein SCHCODRAFT_54491 [Schizophyllum commune H4-8]
gi|300107061|gb|EFI98464.1| hypothetical protein SCHCODRAFT_54491 [Schizophyllum commune H4-8]
Length = 135
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/133 (42%), Positives = 85/133 (63%), Gaps = 10/133 (7%)
Query: 75 QVVEEDAGDLQFPKEFENAETLLISEVHMLLQHR-KTQNENAEEEQEFSEVFQKTLTYTE 133
Q+ EEDA L+ EF A LLISEV LL++R KT +NA V+ KTL Y +
Sbjct: 10 QLEEEDATTLKLGPEFAQAGCLLISEVKYLLENREKTAPDNA--------VYAKTLDYVK 61
Query: 134 RFRKFKNRETITSVRNLLTQK-KLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELR 192
F K+ ++ ++VR +L ++ +L +FE A +ANLCP EEAK++IPSLE + +++ L+
Sbjct: 62 TFAKWHTTDSASAVREILRREPQLTQFETAQLANLCPAEAEEAKSIIPSLEDKVDDDRLQ 121
Query: 193 QILDDIQTKRSLQ 205
+L++IQT R Q
Sbjct: 122 ALLNEIQTMRKFQ 134
>gi|449482280|ref|XP_004156236.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Cucumis sativus]
Length = 139
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 87/132 (65%), Gaps = 5/132 (3%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEE--QEFSEVFQKTLTYTERF 135
EE+A +L+ EF A+ L+ EV ++L+H+ Q + E+ + S+VF+K+L Y +RF
Sbjct: 6 EENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQYVKRF 65
Query: 136 RKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECR---FEEEELR 192
++KN + + VR +L++ +L +FEL + NLCPET EEA +++PSL+ + E+E +
Sbjct: 66 SRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEATSIVPSLKTKGRVHEDEAIE 125
Query: 193 QILDDIQTKRSL 204
++L+D+ +SL
Sbjct: 126 KMLNDLSLIKSL 137
>gi|302768831|ref|XP_002967835.1| hypothetical protein SELMODRAFT_144908 [Selaginella moellendorffii]
gi|302799846|ref|XP_002981681.1| hypothetical protein SELMODRAFT_115080 [Selaginella moellendorffii]
gi|300150513|gb|EFJ17163.1| hypothetical protein SELMODRAFT_115080 [Selaginella moellendorffii]
gi|300164573|gb|EFJ31182.1| hypothetical protein SELMODRAFT_144908 [Selaginella moellendorffii]
Length = 136
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 84/125 (67%), Gaps = 4/125 (3%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLLQHR-KTQNENAEE-EQEFSEVFQKTLTYTERF 135
EEDA +L+ ++F + L+ +EV +LQH+ T N+ +++ + S+VF+K+ Y +RF
Sbjct: 5 EEDASELKLGEDFLKEKCLMNAEVAKILQHKYDTANQMSDDPSSQLSQVFEKSFAYVKRF 64
Query: 136 RKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSL--ECRFEEEELRQ 193
++KN E + VR +L++ +L +FE+ + NLCPET EEA AL+PS+ + R ++E + Q
Sbjct: 65 SRYKNPEAVQQVREVLSRNQLAEFEVCVLGNLCPETVEEATALVPSIAKKGRLDDERIEQ 124
Query: 194 ILDDI 198
+L D+
Sbjct: 125 MLADL 129
>gi|393233961|gb|EJD41528.1| hypothetical protein AURDEDRAFT_115438 [Auricularia delicata
TFB-10046 SS5]
Length = 135
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 83/132 (62%), Gaps = 9/132 (6%)
Query: 75 QVVEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTER 134
Q EEDA L+ EF NA LLISEV +LL HR+ +NA + + V+ KTL Y +
Sbjct: 11 QTEEEDAASLKLGAEFNNAGCLLISEVKLLLDHRR---DNAPD----TAVYNKTLEYVKT 63
Query: 135 FRKFKNRETITSVRNLLTQK-KLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQ 193
F KF E+ ++VR L ++ +L +FE A +ANL P +EAK+++PSL + +++ L+
Sbjct: 64 FAKFSTAESASAVRETLRREPQLTQFETAQLANLVPADVDEAKSIVPSL-VKIDDDRLQS 122
Query: 194 ILDDIQTKRSLQ 205
+LD++QT R Q
Sbjct: 123 LLDEVQTLRKFQ 134
>gi|336368399|gb|EGN96742.1| hypothetical protein SERLA73DRAFT_140488 [Serpula lacrymans var.
lacrymans S7.3]
Length = 134
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 79/129 (61%), Gaps = 9/129 (6%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRK 137
EEDA L+ EF NA LLISEV LL EN +++ + V+ KTL Y + F K
Sbjct: 13 EEDASALKLGAEFNNAGCLLISEVKYLL-------ENRDKDAPDTAVYNKTLEYVKTFTK 65
Query: 138 FKNRETITSVRNLLTQK-KLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
F ++ ++VR L ++ L +FE A IANLCP EEAK++IPSL + +++ L+ +LD
Sbjct: 66 FNTTDSASAVRETLRREPALTQFETAQIANLCPGDAEEAKSVIPSL-VKIDDDRLQALLD 124
Query: 197 DIQTKRSLQ 205
+IQT R Q
Sbjct: 125 EIQTMRKFQ 133
>gi|351722549|ref|NP_001236224.1| uncharacterized protein LOC100527704 [Glycine max]
gi|255632992|gb|ACU16850.1| unknown [Glycine max]
Length = 195
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 86/132 (65%), Gaps = 5/132 (3%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEE--QEFSEVFQKTLTYTERF 135
EE+A +L+ EF A+ L+ EV ++L+H+ Q + ++ + S+VF+K+L Y +RF
Sbjct: 6 EENAAELKIGDEFLKAKCLMNCEVALILEHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRF 65
Query: 136 RKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRF---EEEELR 192
++KN + + VR +L + +L +FEL + NLCPET EEA A++PS++ R ++E +
Sbjct: 66 SRYKNPDAVRQVREILARYELAEFELCVLGNLCPETVEEAIAMVPSIKSRGRAQDDEAIE 125
Query: 193 QILDDIQTKRSL 204
++L+D+ ++L
Sbjct: 126 KMLNDLSLIKNL 137
>gi|449441240|ref|XP_004138390.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Cucumis sativus]
gi|449526195|ref|XP_004170099.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Cucumis sativus]
Length = 138
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 84/126 (66%), Gaps = 5/126 (3%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEE--QEFSEVFQKTLTYTERF 135
EE+A +L+ EF A+ L+ EV ++L+H+ Q + E+ + S+VF+K+L Y +RF
Sbjct: 6 EENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQYVKRF 65
Query: 136 RKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECR---FEEEELR 192
++KN + + VR +L++ +L +FEL + NLCPET EEA A++PSL+ + ++E +
Sbjct: 66 SRYKNPDAVRQVREVLSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKTKGRVHDDEAIE 125
Query: 193 QILDDI 198
++L+D+
Sbjct: 126 KMLNDL 131
>gi|297807017|ref|XP_002871392.1| RPB15.9 [Arabidopsis lyrata subsp. lyrata]
gi|297317229|gb|EFH47651.1| RPB15.9 [Arabidopsis lyrata subsp. lyrata]
Length = 138
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 84/126 (66%), Gaps = 5/126 (3%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEE--QEFSEVFQKTLTYTERF 135
EE+A +L+ EF A+ L+ EV ++L+H+ Q + E+ + S+VF+K+L Y +RF
Sbjct: 6 EENAAELKIGDEFLKAKCLMNCEVSLILEHKFEQLQQVSEDPMNQVSQVFEKSLQYVKRF 65
Query: 136 RKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECR---FEEEELR 192
++KN + + VR +L++ +L +FEL + NLCPET EEA A++PSL+ + ++E +
Sbjct: 66 SRYKNPDAVRQVREILSRHQLTEFELCVLGNLCPETVEEAVAMVPSLKTKGRAHDDEAIE 125
Query: 193 QILDDI 198
++L+D+
Sbjct: 126 KMLNDL 131
>gi|146403790|gb|ABQ32301.1| putative 15.9 kDa subunit of RNA polymerase II [Artemisia annua]
Length = 138
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 83/126 (65%), Gaps = 5/126 (3%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEE--QEFSEVFQKTLTYTERF 135
EE+A +L+ EF A+ L+ EV ++L H+ Q + ++ + S+VF+K+L Y +RF
Sbjct: 6 EENAAELKIGDEFLKAKCLMNCEVSLILDHKLEQLQAMSDDPSNQVSQVFEKSLQYVKRF 65
Query: 136 RKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECR---FEEEELR 192
++KN + + VR LL++ +L +FEL + NLCPET EEA A++PS++ R ++E +
Sbjct: 66 SRYKNPDAVRQVRELLSRHQLAEFELCVLGNLCPETVEEAIAMVPSIKSRGRGHDDEAIE 125
Query: 193 QILDDI 198
++L+D+
Sbjct: 126 KMLNDM 131
>gi|357513237|ref|XP_003626907.1| DNA-directed RNA polymerase II subunit RPB4 [Medicago truncatula]
gi|355520929|gb|AET01383.1| DNA-directed RNA polymerase II subunit RPB4 [Medicago truncatula]
gi|388497296|gb|AFK36714.1| unknown [Medicago truncatula]
Length = 138
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 84/126 (66%), Gaps = 5/126 (3%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEE--QEFSEVFQKTLTYTERF 135
EE+A +L+ EF A+ L+ EV ++L+H+ Q + + ++ + S+VF+K+L Y +RF
Sbjct: 6 EENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQSSDDAMNQVSQVFEKSLQYVKRF 65
Query: 136 RKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRF---EEEELR 192
++KN + + VR +L + +L +FEL + NLCPET EEA A++PS++ R ++E +
Sbjct: 66 SRYKNPDAVRQVREILARYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAQDDEAIE 125
Query: 193 QILDDI 198
++L+D+
Sbjct: 126 KMLNDL 131
>gi|388495724|gb|AFK35928.1| unknown [Lotus japonicus]
Length = 138
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 84/126 (66%), Gaps = 5/126 (3%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEE--QEFSEVFQKTLTYTERF 135
EE+A +L+ EF A+ L+ EV ++L+H+ Q + + ++ + S+VF+K+L Y +RF
Sbjct: 6 EENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQSSDDPMNQVSQVFEKSLQYVKRF 65
Query: 136 RKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRF---EEEELR 192
++KN + + VR +L + +L +FEL + NLCPET EEA A++PS++ R ++E +
Sbjct: 66 SRYKNPDAVRQVREILARYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAQDDEAIE 125
Query: 193 QILDDI 198
++L+D+
Sbjct: 126 KMLNDL 131
>gi|449447482|ref|XP_004141497.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Cucumis sativus]
Length = 138
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 84/126 (66%), Gaps = 5/126 (3%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEE--QEFSEVFQKTLTYTERF 135
EE+A +L+ EF A+ L+ EV ++L+H+ Q + E+ + S+VF+K+L Y +RF
Sbjct: 6 EENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQYVKRF 65
Query: 136 RKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECR---FEEEELR 192
++KN + + VR +L++ +L +FEL + NLCPET EEA +++PSL+ + E+E +
Sbjct: 66 SRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEATSIVPSLKTKGRVHEDEAIE 125
Query: 193 QILDDI 198
++L+D+
Sbjct: 126 KMLNDL 131
>gi|393221841|gb|EJD07325.1| hypothetical protein FOMMEDRAFT_164324 [Fomitiporia mediterranea
MF3/22]
Length = 135
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 80/129 (62%), Gaps = 9/129 (6%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRK 137
EEDA L+ EF NA LLISEV LL EN +++ + V+ KTL Y ++F K
Sbjct: 14 EEDASVLKLGPEFNNAGCLLISEVKYLL-------ENRDKDAPDTVVYNKTLEYVKQFAK 66
Query: 138 FKNRETITSVRNLLTQKKL-HKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
F ++ ++VR L ++ L +FE A IANLCP EEAK++IPSL + +++ L+ +LD
Sbjct: 67 FTTTDSASAVRETLRREPLLTQFETAQIANLCPADAEEAKSIIPSL-AKIDDDRLQALLD 125
Query: 197 DIQTKRSLQ 205
+IQT R Q
Sbjct: 126 EIQTMRKFQ 134
>gi|15242547|ref|NP_196554.1| DNA-directed RNA polymerase II subunit D [Arabidopsis thaliana]
gi|2760362|gb|AAB95261.1| 15.9 kDa subunit of RNA polymerase II [Arabidopsis thaliana]
gi|9758970|dbj|BAB09413.1| 15.9 kDa subunit of RNA polymerase II [Arabidopsis thaliana]
gi|21554212|gb|AAM63291.1| 15.9 kDa subunit of RNA polymerase II [Arabidopsis thaliana]
gi|98960869|gb|ABF58918.1| At5g09920 [Arabidopsis thaliana]
gi|222423668|dbj|BAH19801.1| AT5G09920 [Arabidopsis thaliana]
gi|332004084|gb|AED91467.1| DNA-directed RNA polymerase II subunit D [Arabidopsis thaliana]
Length = 138
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 84/126 (66%), Gaps = 5/126 (3%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEE--QEFSEVFQKTLTYTERF 135
EE+A +L+ EF A+ L+ EV ++L+H+ Q + E+ + S+VF+K+L Y +RF
Sbjct: 6 EENAAELKIGDEFLKAKCLMNCEVSLILEHKFEQLQQISEDPMNQVSQVFEKSLQYVKRF 65
Query: 136 RKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECR---FEEEELR 192
++KN + + VR +L++ +L +FEL + NLCPET EEA A++PSL+ + ++E +
Sbjct: 66 SRYKNPDAVRQVREILSRHQLTEFELCVLGNLCPETVEEAVAMVPSLKTKGRAHDDEAIE 125
Query: 193 QILDDI 198
++L+D+
Sbjct: 126 KMLNDL 131
>gi|351727683|ref|NP_001237937.1| uncharacterized protein LOC100499661 [Glycine max]
gi|255625623|gb|ACU13156.1| unknown [Glycine max]
Length = 138
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 83/126 (65%), Gaps = 5/126 (3%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEE--QEFSEVFQKTLTYTERF 135
EE+A +L+ EF A+ L+ EV ++L+H+ Q + ++ + S+VF+K+L Y +RF
Sbjct: 6 EENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQTSDDPMNQISQVFEKSLQYVKRF 65
Query: 136 RKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRF---EEEELR 192
++KN + + VR +L + +L +FEL + NLCPET EEA A++PS++ R ++E +
Sbjct: 66 SRYKNPDAVRQVREILARYQLAEFELCVLGNLCPETVEEAIAMVPSIKSRGRAQDDEAIE 125
Query: 193 QILDDI 198
++L+D+
Sbjct: 126 KMLNDL 131
>gi|217426791|gb|ACK44499.1| AT5G09920-like protein [Arabidopsis arenosa]
Length = 321
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 74/110 (67%), Gaps = 2/110 (1%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEE--QEFSEVFQKTLTYTERF 135
EE+A +L+ EF A+ L+ EV ++L+H+ Q + E+ + S+VF+K+L Y +RF
Sbjct: 153 EENAAELKIGDEFLKAKCLMNCEVSLILEHKFEQLQQVSEDPMNQVSQVFEKSLQYVKRF 212
Query: 136 RKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECR 185
++KN + + VR +L++ +L +FEL + NLCPET EEA A++PSL+ R
Sbjct: 213 SRYKNPDAVRQVREILSRHQLTEFELCVLGNLCPETVEEAVAMVPSLKWR 262
>gi|170086716|ref|XP_001874581.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164649781|gb|EDR14022.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 134
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 80/132 (60%), Gaps = 9/132 (6%)
Query: 75 QVVEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTER 134
Q EEDA L+ EF NA LLISEV LL EN +++ + V+ KTL Y +
Sbjct: 10 QTEEEDASALKLGPEFNNAGCLLISEVKYLL-------ENRDKDAPDTAVYNKTLEYVKT 62
Query: 135 FRKFKNRETITSVRNLLTQK-KLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQ 193
F KF ++ ++VR L ++ L +FE A IANLCP EEAK++IPSL + +++ L+
Sbjct: 63 FAKFNTTDSASAVRETLRREPALTQFETAQIANLCPADAEEAKSVIPSL-VKIDDDRLQA 121
Query: 194 ILDDIQTKRSLQ 205
+L++IQT R Q
Sbjct: 122 LLEEIQTMRKFQ 133
>gi|351724197|ref|NP_001238073.1| uncharacterized protein LOC100527316 [Glycine max]
gi|255632071|gb|ACU16388.1| unknown [Glycine max]
Length = 138
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 83/126 (65%), Gaps = 5/126 (3%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEE--QEFSEVFQKTLTYTERF 135
EE+A +L+ EF A+ L+ EV ++L+H+ Q + ++ + S+VF+K+L Y +RF
Sbjct: 6 EENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRF 65
Query: 136 RKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRF---EEEELR 192
++KN + + VR +L + +L +FEL + NLCPET EEA A++PS++ R ++E +
Sbjct: 66 SRYKNPDAVRQVREILARYQLAEFELCVLGNLCPETVEEAIAVVPSIKSRGRAQDDEAIE 125
Query: 193 QILDDI 198
++L+D+
Sbjct: 126 KMLNDL 131
>gi|225446712|ref|XP_002282413.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Vitis
vinifera]
gi|147856183|emb|CAN80281.1| hypothetical protein VITISV_017448 [Vitis vinifera]
gi|302143481|emb|CBI22042.3| unnamed protein product [Vitis vinifera]
Length = 138
Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 84/126 (66%), Gaps = 5/126 (3%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEE--QEFSEVFQKTLTYTERF 135
EE+A +L+ EF A+ L+ EV ++L+H+ Q + ++ + S+VF+K+L Y +RF
Sbjct: 6 EENAAELKIGDEFLKAKCLMNCEVAVILEHKYEQLQQMSDDPLNQVSQVFEKSLQYVKRF 65
Query: 136 RKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECR---FEEEELR 192
++KN + + VR +L++ +L +FEL + NLCPET EEA A++PS++ + ++E +
Sbjct: 66 SRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTKGRAHDDEAIE 125
Query: 193 QILDDI 198
++L+D+
Sbjct: 126 KMLNDL 131
>gi|224083811|ref|XP_002307132.1| predicted protein [Populus trichocarpa]
gi|224096326|ref|XP_002310604.1| predicted protein [Populus trichocarpa]
gi|222853507|gb|EEE91054.1| predicted protein [Populus trichocarpa]
gi|222856581|gb|EEE94128.1| predicted protein [Populus trichocarpa]
Length = 138
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 84/126 (66%), Gaps = 5/126 (3%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEE--QEFSEVFQKTLTYTERF 135
EE+A +L+ +F A+ L+ EV ++L+H+ Q + ++ + S+VF+K+L Y +RF
Sbjct: 6 EENAAELKIGDDFLKAKCLMNCEVALILEHKYEQLQQMSDDPMNQVSQVFEKSLQYVKRF 65
Query: 136 RKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECR---FEEEELR 192
++KN + + VR +L++ +L +FEL + NLCPET EEA A++PS++ + ++E +
Sbjct: 66 SRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTKGRAHDDEAIE 125
Query: 193 QILDDI 198
++L+D+
Sbjct: 126 KMLNDL 131
>gi|242216811|ref|XP_002474210.1| predicted protein [Postia placenta Mad-698-R]
gi|220726628|gb|EED80571.1| predicted protein [Postia placenta Mad-698-R]
Length = 134
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 79/132 (59%), Gaps = 9/132 (6%)
Query: 75 QVVEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTER 134
QV EEDA L+ EF NA LLISEV LL EN +++ + V+ KTL Y +
Sbjct: 10 QVEEEDASVLKLGPEFNNAGCLLISEVKYLL-------ENRDKDAPDTAVYNKTLEYVKT 62
Query: 135 FRKFKNRETITSVRNLLTQK-KLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQ 193
F KF ++ ++VR L ++ L +FE A IANLCP EEAK+++PSL + +++ L
Sbjct: 63 FAKFNTTDSASAVRETLRREPALTQFETAQIANLCPVDAEEAKSVVPSL-VKIDDDRLNA 121
Query: 194 ILDDIQTKRSLQ 205
+L +IQT R Q
Sbjct: 122 LLVEIQTMRKFQ 133
>gi|255562011|ref|XP_002522014.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
gi|223538818|gb|EEF40418.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
Length = 138
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 82/126 (65%), Gaps = 5/126 (3%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEE--QEFSEVFQKTLTYTERF 135
EE+A +L+ EF A+ L+ EV ++L+H+ Q + + + S+VF+K+L Y +RF
Sbjct: 6 EENASELKIGDEFLKAKCLMNCEVALILEHKYEQLQQMSNDPMNQVSQVFEKSLQYVKRF 65
Query: 136 RKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECR---FEEEELR 192
++KN + + VR +L++ +L +FEL + NLCPET EEA A++PS++ + ++E +
Sbjct: 66 SRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTKGRAHDDEAIE 125
Query: 193 QILDDI 198
++L D+
Sbjct: 126 KMLTDL 131
>gi|192910802|gb|ACF06509.1| RNA polymerase II 15.9 kDa subunit [Elaeis guineensis]
Length = 138
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 84/126 (66%), Gaps = 5/126 (3%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEE--QEFSEVFQKTLTYTERF 135
EE+A +L+ +EF A+ L+ EV ++L + Q + ++ + S+VF+K++ Y +RF
Sbjct: 6 EENAAELKIGEEFLKAKCLMNCEVALILDRKYEQLQQLSDDPTNQISQVFEKSMQYVKRF 65
Query: 136 RKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECR---FEEEELR 192
++KN++ + VR +L++ +L +FEL + NLCPET EEA A++PS++ + E++ +
Sbjct: 66 SRYKNQDAVRQVREILSRYRLAEFELCVLGNLCPETVEEAIAMVPSIKSKGRIHEDDAIE 125
Query: 193 QILDDI 198
++L+D+
Sbjct: 126 KMLNDL 131
>gi|115443807|ref|NP_001045683.1| Os02g0116900 [Oryza sativa Japonica Group]
gi|41052832|dbj|BAD07723.1| putative 15.9 kDa subunit of RNA polymerase II [Oryza sativa
Japonica Group]
gi|113535214|dbj|BAF07597.1| Os02g0116900 [Oryza sativa Japonica Group]
gi|125537811|gb|EAY84206.1| hypothetical protein OsI_05586 [Oryza sativa Indica Group]
gi|125580570|gb|EAZ21501.1| hypothetical protein OsJ_05124 [Oryza sativa Japonica Group]
gi|215768240|dbj|BAH00469.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 142
Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 82/130 (63%), Gaps = 9/130 (6%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNE---NAEEEQEFSEVFQKTLTYTER 134
EE+A +L+ +EF A+ L+ EV ++L+H+ Q + + + + S+VF+K+L Y +R
Sbjct: 6 EENAAELKIGEEFLKAKCLMNCEVAIILEHKYEQIQHMSDGDPSSQVSQVFEKSLQYVKR 65
Query: 135 FRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLEC--RF----EE 188
F ++KN + + VR L++ L +FEL + NLCP+T +EA AL+PSL RF
Sbjct: 66 FSRYKNPDAVRQVRETLSRYGLAEFELCTLGNLCPDTSDEASALVPSLRSGGRFVGDPGS 125
Query: 189 EELRQILDDI 198
E++ ++L+D+
Sbjct: 126 EKIDKMLNDL 135
>gi|242063790|ref|XP_002453184.1| hypothetical protein SORBIDRAFT_04g001250 [Sorghum bicolor]
gi|241933015|gb|EES06160.1| hypothetical protein SORBIDRAFT_04g001250 [Sorghum bicolor]
Length = 143
Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 82/131 (62%), Gaps = 10/131 (7%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQE----FSEVFQKTLTYTE 133
EE+A +L+ +EF A+ L+ EV ++L+H+ Q + E + S+VF+K+L Y +
Sbjct: 6 EENAAELKIGEEFLKAKCLMNCEVAIILEHKYEQIQQHSSESDPSSQVSQVFEKSLQYVK 65
Query: 134 RFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLEC--RF----E 187
RF ++KN + + VR L++ L +FEL + NLCP+T EA AL+PSL+ RF
Sbjct: 66 RFSRYKNPDAVRQVRETLSRYGLAEFELCTLGNLCPDTSGEATALVPSLKSGGRFVGDAR 125
Query: 188 EEELRQILDDI 198
+E++ ++L+D+
Sbjct: 126 DEKIEKMLNDL 136
>gi|301298709|gb|ADK66819.1| putative RNA polymerase II subunit [Saccharum hybrid cultivar
SP80-3280]
Length = 143
Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 83/131 (63%), Gaps = 10/131 (7%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQ----NENAEEEQEFSEVFQKTLTYTE 133
EE+A +L+ +EF A+ L+ EV ++L+H+ Q + ++ + S+VF+K+L Y +
Sbjct: 6 EENAAELKIGEEFLKAKCLMNCEVAIILEHKYEQILQHSSESDPSSQVSQVFEKSLQYVK 65
Query: 134 RFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLEC--RF----E 187
RF ++KN + + VR L++ L +FEL + NLCP+T EA AL+PSL+ RF
Sbjct: 66 RFSRYKNPDAVRQVRETLSRYGLAEFELCTLGNLCPDTSGEATALVPSLKSGGRFVGDAG 125
Query: 188 EEELRQILDDI 198
+E++ ++L+D+
Sbjct: 126 DEKIEKMLNDL 136
>gi|213401929|ref|XP_002171737.1| DNA-directed RNA polymerase II subunit RPB4 [Schizosaccharomyces
japonicus yFS275]
gi|211999784|gb|EEB05444.1| DNA-directed RNA polymerase II subunit RPB4 [Schizosaccharomyces
japonicus yFS275]
Length = 137
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 74/131 (56%), Gaps = 2/131 (1%)
Query: 76 VVEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQ-NENAEEEQEFSEVFQKTLTYTER 134
V+EEDAG L+ EFEN + L +SE +L++ Q + E ++V +KT+ Y
Sbjct: 7 VMEEDAGQLKLGPEFENEDMLTVSEAKILVETVLAQRSRETGGEVPMTDVMKKTMEYFNI 66
Query: 135 FRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQI 194
F +FK +E + +L + HKFE A + LC E EEA+ LIPSL + +E L+ I
Sbjct: 67 FARFKTQEATYACERILGNR-FHKFERAQLGTLCCEDAEEARTLIPSLATKISDESLQGI 125
Query: 195 LDDIQTKRSLQ 205
LD++ T R Q
Sbjct: 126 LDELSTLRKFQ 136
>gi|226497040|ref|NP_001148722.1| DNA-directed RNA polymerase II 16 kDa polypeptide [Zea mays]
gi|226958433|ref|NP_001152952.1| LOC100285981 [Zea mays]
gi|195607822|gb|ACG25741.1| DNA-directed RNA polymerase II 16 kDa polypeptide [Zea mays]
gi|195621652|gb|ACG32656.1| DNA-directed RNA polymerase II 16 kDa polypeptide [Zea mays]
gi|195655327|gb|ACG47131.1| DNA-directed RNA polymerase II 16 kDa polypeptide [Zea mays]
gi|223946753|gb|ACN27460.1| unknown [Zea mays]
gi|413926837|gb|AFW66769.1| DNA-directed RNA polymerase II polypeptide [Zea mays]
Length = 144
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 83/132 (62%), Gaps = 11/132 (8%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQ-----NENAEEEQEFSEVFQKTLTYT 132
EE+A +L+ +EF A+ L+ EV ++L+H+ Q + ++ + S+VF+K+L Y
Sbjct: 6 EENAAELKIGEEFLKAKCLMNCEVAIILEHKYEQIQQHASSESDPSSQVSQVFEKSLQYV 65
Query: 133 ERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLEC--RF---- 186
+RF ++KN + + VR L++ L +FEL + NLCP+T EA AL+PSL+ RF
Sbjct: 66 KRFSRYKNPDAVRQVRETLSRYGLAEFELCTLGNLCPDTSGEATALVPSLKSGGRFVGDP 125
Query: 187 EEEELRQILDDI 198
+E++ ++L+D+
Sbjct: 126 GDEKIEKMLNDL 137
>gi|412990641|emb|CCO18013.1| predicted protein [Bathycoccus prasinos]
Length = 146
Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 81/133 (60%), Gaps = 5/133 (3%)
Query: 75 QVVEEDAGDLQFPKEFENAETLLISEVHMLLQHR--KTQNENAEEEQEFSEVFQKTLTYT 132
Q +EDA +L+ +F +A+ L ISEV ++++ N N + ++VF+KTL Y
Sbjct: 11 QTEDEDAQELKLGPDFSDAQCLSISEVRLVMEAMIYDYNNRNEDASSTNTQVFEKTLKYV 70
Query: 133 ERFRKFKNRETITSVRNLLT-QKKLHKFELAAIANLCPETPEEAKALIPSLEC--RFEEE 189
+RF ++E + +R++LT Q LH FE A ++NL P +EAK L+PSLE R EE
Sbjct: 71 QRFGGNVSQEAVQLIRDMLTKQNGLHTFEAAVVSNLRPVDYDEAKTLVPSLEAEGRASEE 130
Query: 190 ELRQILDDIQTKR 202
+++++LD++ R
Sbjct: 131 QIQRMLDEMANVR 143
>gi|367020396|ref|XP_003659483.1| hypothetical protein MYCTH_110536 [Myceliophthora thermophila ATCC
42464]
gi|347006750|gb|AEO54238.1| hypothetical protein MYCTH_110536 [Myceliophthora thermophila ATCC
42464]
Length = 146
Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 78/127 (61%), Gaps = 1/127 (0%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRK 137
EE+AG + EFEN +TL +SE ++L T+ +++ ++V KTL Y + F +
Sbjct: 19 EEEAGAVLKLGEFENVDTLTLSEASLVLDALLTKRRKDRKDRNETDVLNKTLDYLDAFAR 78
Query: 138 FKNRETITSVRNLLTQKK-LHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
FK +E + +V LL+ +K L KFE A I +LC + +E K +IPSL + +E+L+++LD
Sbjct: 79 FKEKENVEAVERLLSARKELTKFERAQIGSLCCDGADECKTMIPSLADKISDEDLQELLD 138
Query: 197 DIQTKRS 203
++ + S
Sbjct: 139 EMAKRMS 145
>gi|402223652|gb|EJU03716.1| RNA polymerase II [Dacryopinax sp. DJM-731 SS1]
Length = 135
Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 53/134 (39%), Positives = 80/134 (59%), Gaps = 9/134 (6%)
Query: 74 DQVVEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTE 133
+Q EEDA L+ EF N L ISEV LL+ + + ++V+ KTL Y
Sbjct: 8 NQAEEEDASQLKLSSEFANDLCLSISEVRFLLELPRDRGVPD------TQVYNKTLDYVR 61
Query: 134 RFRKFKNRETITSVRNLLTQ--KKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEEL 191
F KF +E+ +VR L+++ L +FE A IANL P T +EAK++IP+L+ R++++ L
Sbjct: 62 TFTKFPTQESTQAVRALISRGMDDLAQFETAQIANLTPLTADEAKSVIPTLQ-RYDDDVL 120
Query: 192 RQILDDIQTKRSLQ 205
+ ILD++QT R Q
Sbjct: 121 QGILDEMQTLRKFQ 134
>gi|403411898|emb|CCL98598.1| predicted protein [Fibroporia radiculosa]
Length = 153
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 78/149 (52%), Gaps = 25/149 (16%)
Query: 75 QVVEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTER 134
QV EEDA L+ EF NA LLISEV LL EN +++ + V+ KTL Y +
Sbjct: 11 QVEEEDASVLKLGAEFNNAGCLLISEVKYLL-------ENRDKDAPDTAVYNKTLEYVKT 63
Query: 135 FRKFKNRETITSVRNLLTQK-KLHKFELAAIANLCPETPEEAKALIPSLE---------- 183
F KF ++ ++VR L ++ L +FE A IANLCP EEAK+++P
Sbjct: 64 FAKFNTTDSASAVRETLRREPALTQFETAQIANLCPANAEEAKSVVPRYMVTSSSHDYVI 123
Query: 184 -------CRFEEEELRQILDDIQTKRSLQ 205
+ +++ L+ +L +IQT R Q
Sbjct: 124 AYGNQSLVKIDDDRLQTLLQEIQTMRKFQ 152
>gi|449020090|dbj|BAM83492.1| RNA polymerase II subunit [Cyanidioschyzon merolae strain 10D]
Length = 136
Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 77/125 (61%), Gaps = 5/125 (4%)
Query: 78 EEDAGDLQFPKEF---ENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTER 134
EE+A +L+F + F E+ + LLI EV LL+ ++ + AE + +F K+ Y ER
Sbjct: 8 EENAENLKFGELFGDNEHCQPLLICEVAELLRQKRAELP-AELQSSLGPIFVKSEAYVER 66
Query: 135 FRKFKNRETITSVR-NLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQ 193
F +F++ E VR L +LH FE A +ANL PETP EAKA+IPSL+ + +++ L Q
Sbjct: 67 FNQFRSAEVAKVVRVRLERHPELHPFERAQLANLLPETPAEAKAIIPSLKGKLDDDVLGQ 126
Query: 194 ILDDI 198
+L D+
Sbjct: 127 LLRDL 131
>gi|19112207|ref|NP_595415.1| DNA-directed RNA polymerase II complex subunit Rpb4
[Schizosaccharomyces pombe 972h-]
gi|9297039|sp|O74825.1|RPB4_SCHPO RecName: Full=DNA-directed RNA polymerase II subunit rpb4;
Short=RNA polymerase II subunit B4
gi|256599718|pdb|3H0G|D Chain D, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|256599730|pdb|3H0G|P Chain P, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|7453509|gb|AAF62856.1|AF149308_1 RNA polymerase II specific subunit Rpb4 [Schizosaccharomyces pombe]
gi|3738191|emb|CAA21284.1| DNA-directed RNA polymerase II complex subunit Rpb4
[Schizosaccharomyces pombe]
gi|6088094|dbj|BAA85621.1| RNA polymerase II subunit 4 (Rpb4) [Schizosaccharomyces pombe]
Length = 135
Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 71/131 (54%), Gaps = 2/131 (1%)
Query: 76 VVEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQN-ENAEEEQEFSEVFQKTLTYTER 134
+ EEDA L+ EFEN + L +SE +L++ Q E ++V +KT+ Y
Sbjct: 5 IFEEDAAQLKLGPEFENEDMLTVSEAKILIETVLAQRARETNGEIPMTDVMKKTVAYFNV 64
Query: 135 FRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQI 194
F +FK E + +L + HKFE A + LC E EEA+ LIPSL + +++ L+ I
Sbjct: 65 FARFKTAEATYACERILGNR-FHKFERAQLGTLCCEDAEEARTLIPSLANKIDDQNLQGI 123
Query: 195 LDDIQTKRSLQ 205
LD++ T R Q
Sbjct: 124 LDELSTLRKFQ 134
>gi|328855128|gb|EGG04256.1| hypothetical protein MELLADRAFT_89474 [Melampsora larici-populina
98AG31]
Length = 130
Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 74/122 (60%), Gaps = 10/122 (8%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRK 137
EEDA L+ EF+ A L ISEV +LL+ R + A V++KT + +F +
Sbjct: 10 EEDASQLKLGPEFDAAGCLSISEVKLLLEQRDKPADTA--------VYKKTQEFVNQFAR 61
Query: 138 FKNRETITSVRNLLTQKK-LHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
F ++ + R +L++ + L FELA +A+LCPE EEAK+LIPSL + +++ L+ IL+
Sbjct: 62 FSTTDSAQAARQILSKDQTLKPFELAQLASLCPEEAEEAKSLIPSLAAK-DDDALQAILN 120
Query: 197 DI 198
+I
Sbjct: 121 EI 122
>gi|357513239|ref|XP_003626908.1| DNA-directed RNA polymerase II subunit RPB4 [Medicago truncatula]
gi|355520930|gb|AET01384.1| DNA-directed RNA polymerase II subunit RPB4 [Medicago truncatula]
Length = 114
Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 71/104 (68%), Gaps = 5/104 (4%)
Query: 100 EVHMLLQHRKTQNENAEEE--QEFSEVFQKTLTYTERFRKFKNRETITSVRNLLTQKKLH 157
EV ++L+H+ Q + + ++ + S+VF+K+L Y +RF ++KN + + VR +L + +L
Sbjct: 4 EVSLILEHKYEQLQQSSDDAMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILARYQLA 63
Query: 158 KFELAAIANLCPETPEEAKALIPSLECRF---EEEELRQILDDI 198
+FEL + NLCPET EEA A++PS++ R ++E + ++L+D+
Sbjct: 64 EFELCVLGNLCPETVEEAIAMVPSIKTRGRAQDDEAIEKMLNDL 107
>gi|367043448|ref|XP_003652104.1| hypothetical protein THITE_2150040 [Thielavia terrestris NRRL 8126]
gi|346999366|gb|AEO65768.1| hypothetical protein THITE_2150040 [Thielavia terrestris NRRL 8126]
Length = 146
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 77/122 (63%), Gaps = 1/122 (0%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRK 137
EE+AG + EF++ +TL +SE +++ + +++ ++V KTL Y + F +
Sbjct: 19 EEEAGAVLKLGEFQDVDTLTLSEAALVINALMAKRRKDRKDRNETDVLVKTLDYLDSFAR 78
Query: 138 FKNRETITSVRNLLT-QKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
FK +E + +V LL+ QK+L K+E A I +LC ++ +E K LIPSL + +E+L+++LD
Sbjct: 79 FKQKENVEAVERLLSAQKELTKYERAQIGSLCCDSADECKTLIPSLADKISDEDLQELLD 138
Query: 197 DI 198
++
Sbjct: 139 EM 140
>gi|301118222|ref|XP_002906839.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262108188|gb|EEY66240.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 155
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 80/142 (56%), Gaps = 22/142 (15%)
Query: 71 HVLDQVVEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLT 130
HV+D EDA +L +F N L +EV ++L+ +K+ E +E++ + VFQKT +
Sbjct: 7 HVVDT---EDAAELNLGDDFRNETCLSNAEVAVILEKQKSDYET--QEKQLTNVFQKTYS 61
Query: 131 YTERFRKFK----NRETITSVRNLL-------------TQKKLHKFELAAIANLCPETPE 173
Y +RF K N+ ++T +R L + +L +FE+A ++NL PE E
Sbjct: 62 YVQRFSGTKDPVANQASVTELREALMSLAFQREADGETVEYRLEEFEIACLSNLNPEEVE 121
Query: 174 EAKALIPSLECRFEEEELRQIL 195
EA ALIPSL RF E+E+ +IL
Sbjct: 122 EAVALIPSLHKRFAEDEIEEIL 143
>gi|320166248|gb|EFW43147.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 130
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 66/107 (61%), Gaps = 4/107 (3%)
Query: 76 VVEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQE---FSEVFQKTLTYT 132
+ EE A DL+ ++FE A L +EV ++L+ RK + N E E + +KTL Y
Sbjct: 10 IDEESAADLRLTEKFEKANCLFPAEVKLILEDRKNAHTNPESELSRIPITNTLEKTLAYV 69
Query: 133 ERFRKFKNRETITSVRNLLTQ-KKLHKFELAAIANLCPETPEEAKAL 178
+ F ++KN ET VRN L + +K +FE+AA+A+LCPE EEAKAL
Sbjct: 70 QAFPQYKNTETAREVRNKLERFEKFRQFEIAALASLCPEQAEEAKAL 116
>gi|326434249|gb|EGD79819.1| hypothetical protein PTSG_10802 [Salpingoeca sp. ATCC 50818]
Length = 153
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 77/139 (55%), Gaps = 12/139 (8%)
Query: 77 VEEDAGDLQFPKEFENAET--LLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTER 134
V EDA L+F ++FE T LL+SEV +L+ RK + + S F KTL Y +R
Sbjct: 14 VVEDANSLEFFEDFEQVSTVPLLLSEVEKILEARKDLQLREDPDAAMSAEFTKTLDYAQR 73
Query: 135 FRKFKNRETITSVRNLL---------TQKKLHKFELAAIANLCPETPEEAKALIPSLECR 185
F ++ E ++R+++ +K+LHKFE + NL PET EEAKALIP+L R
Sbjct: 74 FGHSRSYEADEALRSIMEELRTQTPDMEKRLHKFEEVQLINLAPETVEEAKALIPTL-VR 132
Query: 186 FEEEELRQILDDIQTKRSL 204
+++ L +L I RS
Sbjct: 133 VDDDILENVLQQIMAFRSF 151
>gi|384247187|gb|EIE20674.1| polymeras-like protein II polypeptide D [Coccomyxa subellipsoidea
C-169]
Length = 141
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 72/131 (54%), Gaps = 6/131 (4%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRK 137
EE+A + +FP F++A+ L EV +L + + + + + KT Y ERF
Sbjct: 9 EENAAEGRFPSVFDSAQALTNGEVSAILAKIVAAKKQEDPAYQPNPLLAKTQEYVERFSG 68
Query: 138 FKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLEC------RFEEEEL 191
KN +R +L ++ FELA++ANL PET EEA+ LIPSL+ RF ++ L
Sbjct: 69 NKNEAVNQQIRMVLDAGEMTGFELASVANLQPETAEEARILIPSLDATQGDEPRFSDDTL 128
Query: 192 RQILDDIQTKR 202
+ +LDD+ T +
Sbjct: 129 QIVLDDVATYK 139
>gi|348688883|gb|EGZ28697.1| hypothetical protein PHYSODRAFT_552395 [Phytophthora sojae]
Length = 155
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 80/142 (56%), Gaps = 22/142 (15%)
Query: 71 HVLDQVVEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLT 130
HV+D EDA +L +F N L +EV ++L+ +K+ E +E++ + VFQKT +
Sbjct: 7 HVVDT---EDAAELNLGDDFRNETCLSNAEVAVILEKQKSDYET--QEKQLTNVFQKTYS 61
Query: 131 YTERFRKFK----NRETITSVRNLL-------------TQKKLHKFELAAIANLCPETPE 173
Y +RF K N+ ++T +R L + +L +FE+A ++NL PE E
Sbjct: 62 YVQRFSGTKDPVANQASVTELREALMSLAFQREEDGETVEYRLEEFEIACLSNLNPEEVE 121
Query: 174 EAKALIPSLECRFEEEELRQIL 195
EA ALIPSL RF E+E+ +IL
Sbjct: 122 EAVALIPSLHKRFAEDEIEEIL 143
>gi|145350124|ref|XP_001419467.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|145357498|ref|XP_001422955.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579699|gb|ABO97760.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144583199|gb|ABP01314.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 147
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 77/134 (57%), Gaps = 9/134 (6%)
Query: 79 EDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFS----EVFQKTLTYTER 134
EDAG+L+ +F++A L ++EV ++ + + ++AE+ +E S VF+KTL Y +R
Sbjct: 16 EDAGELRLGPDFDDANCLSLAEVKIVCESKVA--DDAEQAEETSTTRTRVFEKTLAYAKR 73
Query: 135 FRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECR---FEEEEL 191
F + ++R L LH FE AAI+NL P+ +EAK L+PSLE EE +
Sbjct: 74 FSGNTSSTAAAAIRELHNNSGLHDFEGAAISNLKPQDWDEAKTLVPSLEQEDRGLTEEGI 133
Query: 192 RQILDDIQTKRSLQ 205
+ +LD++ R +
Sbjct: 134 QAMLDEMSNVRKFE 147
>gi|402077442|gb|EJT72791.1| hypothetical protein GGTG_09646 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 143
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 66/103 (64%), Gaps = 9/103 (8%)
Query: 89 EFENAETLLISE----VHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETI 144
EFE ETL +SE ++ L+ R+ + +N E +EV KT+ Y + F +FK +E +
Sbjct: 28 EFEGVETLSLSEASLVINALMAKRRNERKNVNE----TEVLHKTIDYLDAFARFKQKENV 83
Query: 145 TSVRNLLTQK-KLHKFELAAIANLCPETPEEAKALIPSLECRF 186
+V LL+ + +L KFE AA+ +LCPET EEAK LIPSL+ +F
Sbjct: 84 EAVERLLSARPELTKFERAALGSLCPETAEEAKRLIPSLKDKF 126
>gi|429856634|gb|ELA31534.1| polymerase II polypeptide d [Colletotrichum gloeosporioides Nara
gc5]
Length = 144
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 77/125 (61%), Gaps = 9/125 (7%)
Query: 79 EDAGDLQFPKEFENAETLLISE----VHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTER 134
E+A + EF++ +TL +SE ++ L+ RK +N E +E+ +TL Y +
Sbjct: 18 EEASSVLNLGEFQHVDTLTLSEASLVINALVAKRKMDRKNINE----TEMLTQTLNYLDA 73
Query: 135 FRKFKNRETITSVRNLLT-QKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQ 193
F +F+ +E + +V LL+ K+L KFE A I +LC ET EEAK LIPSL+ + +++L+
Sbjct: 74 FSRFRQKENVEAVERLLSAHKQLAKFERAQIGSLCCETAEEAKTLIPSLQDKISDDDLQI 133
Query: 194 ILDDI 198
+LD+I
Sbjct: 134 LLDEI 138
>gi|346975025|gb|EGY18477.1| hypothetical protein VDAG_08811 [Verticillium dahliae VdLs.17]
Length = 160
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 73/115 (63%), Gaps = 9/115 (7%)
Query: 89 EFENAETLLISE----VHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETI 144
EF+ +TL +SE ++ L+ R+ +N E +E+ +TL Y + F +F+ +E +
Sbjct: 44 EFQEVDTLTLSEASLVINALVTKRRMDRKNVNE----TEMLTQTLNYLDAFSRFRQKENV 99
Query: 145 TSVRNLLT-QKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDI 198
+V LL+ K+L KFE A I +LC ET EEAK LIPSL+ + +E+L+++LD+I
Sbjct: 100 EAVERLLSAHKQLAKFERAQIGSLCCETAEEAKTLIPSLQDKITDEDLQELLDEI 154
>gi|302412369|ref|XP_003004017.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
gi|261356593|gb|EEY19021.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
Length = 160
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 73/115 (63%), Gaps = 9/115 (7%)
Query: 89 EFENAETLLISE----VHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETI 144
EF+ +TL +SE ++ L+ R+ +N E +E+ +TL Y + F +F+ +E +
Sbjct: 44 EFQEVDTLTLSEASLVINALVTKRRMDRKNVNE----TEMLTQTLNYLDAFSRFRQKENV 99
Query: 145 TSVRNLLT-QKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDI 198
+V LL+ K+L KFE A I +LC ET EEAK LIPSL+ + +E+L+++LD+I
Sbjct: 100 EAVERLLSAHKQLAKFERAQIGSLCCETAEEAKTLIPSLQDKITDEDLQELLDEI 154
>gi|400601404|gb|EJP69047.1| RNA polymerase Rpb4 [Beauveria bassiana ARSEF 2860]
Length = 138
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 68/111 (61%), Gaps = 1/111 (0%)
Query: 89 EFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVR 148
EF N +TL +SE ++L + N + +E+ +TL+Y + F +F +E + +V
Sbjct: 22 EFNNVDTLTLSEASLVLNALVAKRRNDRKNVNETEMLNQTLSYLDHFARFTQKENVEAVE 81
Query: 149 NLL-TQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDI 198
LL T K L KFE A + +LC ET +EAK LIPSL + +E+L+++L++I
Sbjct: 82 RLLSTHKDLAKFERAQLGSLCCETADEAKTLIPSLADKISDEDLKELLEEI 132
>gi|310793276|gb|EFQ28737.1| RNA polymerase Rpb4 [Glomerella graminicola M1.001]
Length = 144
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 77/125 (61%), Gaps = 9/125 (7%)
Query: 79 EDAGDLQFPKEFENAETLLISE----VHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTER 134
E+A + EF++ +TL +SE ++ L+ RK +N E +E+ +TL Y +
Sbjct: 18 EEASTILNLGEFQHVDTLTLSEASLVINALVTKRKMDRKNINE----TEMLTQTLNYLDA 73
Query: 135 FRKFKNRETITSVRNLLT-QKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQ 193
F +F+ +E + +V LL+ K+L KFE A I +LC ET EEAK LIPSL+ + +++L+
Sbjct: 74 FSRFRQKENVEAVERLLSAHKQLAKFERAQIGSLCCETAEEAKTLIPSLQDKISDDDLQI 133
Query: 194 ILDDI 198
+LD+I
Sbjct: 134 LLDEI 138
>gi|331212571|ref|XP_003307555.1| DNA-directed RNA polymerase II subunit D [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|309297958|gb|EFP74549.1| DNA-directed RNA polymerase II subunit D [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 130
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 79/125 (63%), Gaps = 10/125 (8%)
Query: 75 QVVEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTER 134
++ EEDA L+ +EF+ A L ISEV +LL+ + + + A V++KT Y +
Sbjct: 7 KIQEEDASQLKLGQEFDMAGCLSISEVKLLLETGEKRADTA--------VYKKTHEYVNQ 58
Query: 135 FRKFKNRETITSVRNLLTQKK-LHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQ 193
F +F + ++ + R +L++ L +FELA +A+LCPE EEAK+LIPS+ + +++ L+
Sbjct: 59 FARFNSTDSAQAARQILSKDTTLKQFELAQLASLCPEEAEEAKSLIPSIAGK-DDDALQA 117
Query: 194 ILDDI 198
+L++I
Sbjct: 118 LLNEI 122
>gi|380495044|emb|CCF32692.1| RNA polymerase Rpb4 [Colletotrichum higginsianum]
Length = 144
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 77/125 (61%), Gaps = 9/125 (7%)
Query: 79 EDAGDLQFPKEFENAETLLISE----VHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTER 134
E+A + EF++ +TL +SE ++ L+ RK +N E +E+ +TL Y +
Sbjct: 18 EEASTILNLGEFQHVDTLTLSEASLVINALVTKRKIDRKNINE----TEMLTQTLNYLDA 73
Query: 135 FRKFKNRETITSVRNLLT-QKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQ 193
F +F+ +E + +V LL+ K+L KFE A I +LC ET EEAK LIPSL+ + +++L+
Sbjct: 74 FSRFRQKENVEAVERLLSAHKQLAKFERAQIGSLCCETAEEAKTLIPSLQDKISDDDLQI 133
Query: 194 ILDDI 198
+LD+I
Sbjct: 134 LLDEI 138
>gi|85111201|ref|XP_963824.1| hypothetical protein NCU09378 [Neurospora crassa OR74A]
gi|28925563|gb|EAA34588.1| conserved hypothetical protein [Neurospora crassa OR74A]
gi|350286313|gb|EGZ67561.1| hypothetical protein NEUTE2DRAFT_153094 [Neurospora tetrasperma
FGSC 2509]
Length = 146
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 76/122 (62%), Gaps = 1/122 (0%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRK 137
EE+A + EF++ +TL +SE +++ T+ +++ ++V KTL Y + F +
Sbjct: 19 EEEASAVLKLGEFQDVDTLTLSEASLVINALMTKRRKDRKDRNETDVLNKTLDYLDAFAR 78
Query: 138 FKNRETITSVRNLLTQKK-LHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
FK +E + +V LL+ +K L KFE A I +LC ++ +E K LIPSL + ++EL+++LD
Sbjct: 79 FKQKENVEAVERLLSARKELTKFERAQIGSLCCDSADECKTLIPSLADKITDDELQELLD 138
Query: 197 DI 198
++
Sbjct: 139 EM 140
>gi|336272363|ref|XP_003350938.1| hypothetical protein SMAC_04242 [Sordaria macrospora k-hell]
gi|380090705|emb|CCC04875.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 146
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 75/122 (61%), Gaps = 1/122 (0%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRK 137
EE+A + EF + +TL +SE +++ T+ +++ ++V KTL Y + F +
Sbjct: 19 EEEASAVLKLGEFNDVDTLTLSEASLVINALMTKRRKDRKDRNETDVLNKTLDYLDAFAR 78
Query: 138 FKNRETITSVRNLLTQKK-LHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
FK +E + +V LL+ +K L KFE A I +LC ++ +E K LIPSL + ++E L+++LD
Sbjct: 79 FKQKENVEAVERLLSARKELTKFERAQIGSLCCDSADECKTLIPSLADKIDDENLQELLD 138
Query: 197 DI 198
++
Sbjct: 139 EM 140
>gi|116206890|ref|XP_001229254.1| hypothetical protein CHGG_02738 [Chaetomium globosum CBS 148.51]
gi|88183335|gb|EAQ90803.1| hypothetical protein CHGG_02738 [Chaetomium globosum CBS 148.51]
Length = 146
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 74/122 (60%), Gaps = 1/122 (0%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRK 137
EE+AG + EFE +TL +SE +++ + +++ ++V KTL Y + F +
Sbjct: 19 EEEAGAVLKLGEFEGVDTLTLSEASLVIDALMLKRRKDRKDRNETDVLNKTLDYLDAFAR 78
Query: 138 FKNRETITSVRNLL-TQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
FK +E + +V LL + K+L KFE A I +LC ++ +E K +IPSL + +E L+++LD
Sbjct: 79 FKEKENVEAVERLLSSHKELTKFERAHIGSLCCDSADECKTMIPSLADKISDERLQELLD 138
Query: 197 DI 198
++
Sbjct: 139 EM 140
>gi|340516575|gb|EGR46823.1| predicted protein [Trichoderma reesei QM6a]
Length = 142
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 71/121 (58%), Gaps = 1/121 (0%)
Query: 79 EDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKF 138
E+AG + EF++ +TL +SE ++L + N + +E+ +TL Y + F +F
Sbjct: 16 EEAGAVLNLGEFQDVDTLTLSEAALVLNALVAKRRNDRKNVNETEMLNQTLNYLDHFARF 75
Query: 139 KNRETITSVRNLLT-QKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDD 197
+E + +V LL+ K L KFE A + +LC E +EAK LIPSL + +E+L+ +LD+
Sbjct: 76 TQKENVEAVERLLSAHKNLAKFERAQLGSLCCENADEAKTLIPSLADKISDEDLQDLLDE 135
Query: 198 I 198
I
Sbjct: 136 I 136
>gi|322708586|gb|EFZ00163.1| RNA polymerase Rpb4 family protein [Metarhizium anisopliae ARSEF
23]
Length = 143
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 67/111 (60%), Gaps = 1/111 (0%)
Query: 89 EFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVR 148
EF+N +TL +SE ++L + N + +E+ +TL Y + F +F +E + +V
Sbjct: 27 EFQNVDTLTLSEAALVLNALVAKRRNDRKNVNETEMLNQTLNYLDHFARFTQKENVEAVE 86
Query: 149 NLLT-QKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDI 198
LL+ K L KFE A + +LC E +EAK LIPSL + ++E+L+ +LD+I
Sbjct: 87 RLLSAHKDLAKFERAQLGSLCCENADEAKTLIPSLADKIKDEDLQDLLDEI 137
>gi|346320862|gb|EGX90462.1| polymerase (RNA) II (DNA directed) polypeptide D [Cordyceps
militaris CM01]
Length = 143
Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 74/121 (61%), Gaps = 1/121 (0%)
Query: 79 EDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKF 138
E+A + EF+N +TL +SE ++L + N + +E+ +TL+Y + F +F
Sbjct: 17 EEASTILNLGEFQNVDTLTLSEASLVLNALVAKRRNDRKNVNETEMLSQTLSYLDHFARF 76
Query: 139 KNRETITSVRNLL-TQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDD 197
+E + +V LL T K L KFE A + +LC E+ +EAK LIPSL + ++E+L+++L++
Sbjct: 77 TQKENVEAVERLLSTHKDLAKFERAQLGSLCCESADEAKTLIPSLTEKIKDEDLQELLEE 136
Query: 198 I 198
I
Sbjct: 137 I 137
>gi|336464636|gb|EGO52876.1| hypothetical protein NEUTE1DRAFT_114768 [Neurospora tetrasperma
FGSC 2508]
Length = 320
Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 76/122 (62%), Gaps = 1/122 (0%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRK 137
EE+A + EF++ +TL +SE +++ T+ +++ ++V KTL Y + F +
Sbjct: 193 EEEASAVLKLGEFQDVDTLTLSEASLVINALMTKRRKDRKDRNETDVLNKTLDYLDAFAR 252
Query: 138 FKNRETITSVRNLLTQKK-LHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
FK +E + +V LL+ +K L KFE A I +LC ++ +E K LIPSL + ++EL+++LD
Sbjct: 253 FKQKENVEAVERLLSARKELTKFERAQIGSLCCDSADECKTLIPSLADKITDDELQELLD 312
Query: 197 DI 198
++
Sbjct: 313 EM 314
>gi|322696884|gb|EFY88670.1| RNA polymerase Rpb4 family protein [Metarhizium acridum CQMa 102]
Length = 143
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 68/111 (61%), Gaps = 1/111 (0%)
Query: 89 EFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVR 148
EF++ +TL +SE ++L T+ N + +E+ +TL Y + F +F +E + +V
Sbjct: 27 EFQDVDTLTLSEAALVLNALVTKRRNDRKNINETEMLNQTLNYLDHFARFTQKENVEAVE 86
Query: 149 NLLT-QKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDI 198
LL+ K L KFE A + +LC E +EAK LIPSL + ++E+L+ +LD+I
Sbjct: 87 RLLSAHKDLAKFERAQLGSLCCENADEAKTLIPSLADKIKDEDLQDLLDEI 137
>gi|408387669|gb|EKJ67386.1| hypothetical protein FPSE_12432 [Fusarium pseudograminearum CS3096]
Length = 157
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 89 EFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVR 148
EF++ +TL +SE ++L + +N +E+ TLTY + F +F +E + +V
Sbjct: 41 EFQDVDTLTLSEAALVLNALHAKRKNDRRNVNNTEMLNSTLTYLDNFARFTQKENVEAVE 100
Query: 149 NLLT-QKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDI 198
LL+ K L KFE A + +LC E +EAK LIPSL + +++L+ +LD+I
Sbjct: 101 RLLSAHKNLAKFERAQLGSLCCEGADEAKTLIPSLADKISDQDLQDLLDEI 151
>gi|342879575|gb|EGU80820.1| hypothetical protein FOXB_08687 [Fusarium oxysporum Fo5176]
Length = 158
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 89 EFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVR 148
EF++ +TL +SE ++L + +N +E+ TLTY + F +F +E + +V
Sbjct: 42 EFQDVDTLTLSEAALVLNALHAKRKNDRRNVNNTEMLNSTLTYLDNFARFTQKENVEAVE 101
Query: 149 NLLT-QKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDI 198
LL+ K L KFE A + +LC E +EAK LIPSL + +++L+ +LD+I
Sbjct: 102 RLLSAHKNLAKFERAQLGSLCCEGADEAKTLIPSLADKISDQDLQDLLDEI 152
>gi|46108486|ref|XP_381301.1| hypothetical protein FG01125.1 [Gibberella zeae PH-1]
Length = 157
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 89 EFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVR 148
EF++ +TL +SE ++L + +N +E+ TLTY + F +F +E + +V
Sbjct: 41 EFQDVDTLTLSEAALVLNALHAKRKNDRRNVNNTEMLNSTLTYLDNFARFTQKENVEAVE 100
Query: 149 NLLT-QKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDI 198
LL+ K L KFE A + +LC E +EAK LIPSL + +++L+ +LD+I
Sbjct: 101 RLLSAHKNLAKFERAQLGSLCCEGADEAKTLIPSLADKISDQDLQDLLDEI 151
>gi|302925861|ref|XP_003054179.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256735120|gb|EEU48466.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 154
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 67/111 (60%), Gaps = 1/111 (0%)
Query: 89 EFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVR 148
EF+ +TL +SE ++L + N + +E+ +TLTY + F +F +E + +V
Sbjct: 38 EFQEVDTLTLSEAALVLNALVAKRRNDRKNVNETEMLNQTLTYLDHFARFTQKENVEAVE 97
Query: 149 NLLT-QKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDI 198
LL+ K L KFE A + +LC E +EAK LIPSL + ++E+L+ +LD+I
Sbjct: 98 RLLSAHKNLAKFERAQLGSLCCENADEAKTLIPSLADKIKDEDLQDLLDEI 148
>gi|389626587|ref|XP_003710947.1| hypothetical protein MGG_04508 [Magnaporthe oryzae 70-15]
gi|351650476|gb|EHA58335.1| hypothetical protein MGG_04508 [Magnaporthe oryzae 70-15]
gi|440463443|gb|ELQ33023.1| hypothetical protein OOU_Y34scaffold01005g49 [Magnaporthe oryzae
Y34]
gi|440481312|gb|ELQ61911.1| hypothetical protein OOW_P131scaffold01138g29 [Magnaporthe oryzae
P131]
Length = 150
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 69/113 (61%), Gaps = 6/113 (5%)
Query: 89 EFENAETLLISEVHMLLQ--HRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITS 146
EFE ETL SE ++L+ +K + E E +EV QKT + FR+FK E + +
Sbjct: 36 EFEGVETLSYSEAELVLEALEKKRRKEKRYHE---TEVLQKTRDHLSLFRRFKTPENVQA 92
Query: 147 VRNLLTQK-KLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDI 198
LL+ + +LHKFE A IA+L PE +EAK LIPSL+ +F++ +L +L ++
Sbjct: 93 AERLLSARPELHKFERAQIASLVPENSDEAKKLIPSLKDKFDDHDLEDLLQEL 145
>gi|356525584|ref|XP_003531404.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB4-like [Glycine max]
Length = 136
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 78/126 (61%), Gaps = 7/126 (5%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEE--QEFSEVFQKTLTYTERF 135
EE+A +L+ EF A+ L+ EV ++ +H+ Q + ++ + S+VF+K+ Y +RF
Sbjct: 6 EENAAELKIGDEFLKAKCLMNCEVALIPEHKYXQLQQISDDPMNQVSQVFEKSQQYVKRF 65
Query: 136 RKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRF---EEEELR 192
++KN + + +L + +L +FEL + NLC ET EEA A++PS+E R ++E +
Sbjct: 66 SRYKNPDAVRD--KILARYQLAEFELCVLGNLCLETVEEAIAMVPSIESRGRAQDDEAIE 123
Query: 193 QILDDI 198
++L+D+
Sbjct: 124 KMLNDL 129
>gi|358394175|gb|EHK43576.1| hypothetical protein TRIATDRAFT_148798 [Trichoderma atroviride IMI
206040]
Length = 142
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 67/111 (60%), Gaps = 1/111 (0%)
Query: 89 EFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVR 148
EF++ +TL +SE ++L + N + +E+ +TL Y + F +F +E + +V
Sbjct: 26 EFQHVDTLTLSEAALVLNALVAKRRNDRKNVNETEMLNQTLNYLDHFARFTQKENVEAVE 85
Query: 149 NLLT-QKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDI 198
LL+ K L KFE A + +LC E +EAK LIPSL + ++E+L+ +LD+I
Sbjct: 86 RLLSAHKDLAKFERAQLGSLCCENADEAKTLIPSLADKIKDEDLQDLLDEI 136
>gi|358387427|gb|EHK25022.1| hypothetical protein TRIVIDRAFT_30210 [Trichoderma virens Gv29-8]
Length = 142
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 67/111 (60%), Gaps = 1/111 (0%)
Query: 89 EFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVR 148
EF++ +TL +SE ++L + N + +E+ +TL Y + F +F +E + +V
Sbjct: 26 EFQHVDTLTLSEAALVLNALVAKRRNDRKNVNETEMLNQTLNYLDHFARFTQKENVEAVE 85
Query: 149 NLLT-QKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDI 198
LL+ K L KFE A + +LC E +EAK LIPSL + ++E+L+ +LD+I
Sbjct: 86 RLLSAHKDLAKFERAQLGSLCCENADEAKTLIPSLADKIKDEDLQDLLDEI 136
>gi|320592320|gb|EFX04759.1| DNA directed RNA polymerase 2 polypeptide d [Grosmannia clavigera
kw1407]
Length = 143
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 58/95 (61%), Gaps = 1/95 (1%)
Query: 89 EFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVR 148
EFE ETL +SE +++ + N ++ +EV KT+ Y + F +FK +E + +V
Sbjct: 28 EFEGVETLSLSEAWLVINALMAKRRNDQKNVNETEVLTKTVDYLDAFARFKRKENVEAVE 87
Query: 149 NLL-TQKKLHKFELAAIANLCPETPEEAKALIPSL 182
LL + +L KFE AA+ +LCPE EEAK LIPSL
Sbjct: 88 RLLASHTELTKFERAALGSLCPEGVEEAKTLIPSL 122
>gi|388583691|gb|EIM23992.1| hypothetical protein WALSEDRAFT_59044 [Wallemia sebi CBS 633.66]
Length = 134
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 72/131 (54%), Gaps = 14/131 (10%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRK 137
+EDA L+ EF + L ISEV LL R + + + VF+KT Y F
Sbjct: 15 DEDASKLKLGAEFNDMGCLTISEVKHLLDGRAGEAD--------TPVFKKTSEYVNTFTV 66
Query: 138 FKNRETITSVRNLLTQ-KKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEEL--RQI 194
F ++E+ SVR L + +K+ +FE A I NL P EEAK+LIPSL +E +E+ + I
Sbjct: 67 FGSKESAISVREALKKDEKMTQFEQAQIGNLVPGDVEEAKSLIPSL---YEHDEMTVQTI 123
Query: 195 LDDIQTKRSLQ 205
LD++ R +Q
Sbjct: 124 LDELDALRKMQ 134
>gi|449297580|gb|EMC93598.1| hypothetical protein BAUCODRAFT_125443 [Baudoinia compniacensis
UAMH 10762]
Length = 161
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 70/125 (56%), Gaps = 9/125 (7%)
Query: 89 EFENAETLLISEVHMLLQH--RKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITS 146
EF+N L ++E + LL K+ N + ++V+ KT Y E F +FK+ +T+T
Sbjct: 36 EFDNTPCLSVAECNELLTRLAEKSGGGNTRPATQNNDVYLKTREYVESFARFKDSKTVTQ 95
Query: 147 V----RNLLTQKK---LHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQ 199
V LL + K + FE A +A LC +T EEAK LIPSLE + +++EL++ LD+I
Sbjct: 96 VDAISSALLGRGKGEGVTNFERAQLATLCCDTAEEAKTLIPSLEGKLDDDELQRALDEIS 155
Query: 200 TKRSL 204
R
Sbjct: 156 KLRDF 160
>gi|384496661|gb|EIE87152.1| hypothetical protein RO3G_11863 [Rhizopus delemar RA 99-880]
Length = 121
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
Query: 79 EDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKF 138
EDA +L +EF A+ L +SEV ++L + ++ + + V KTL Y F ++
Sbjct: 20 EDATNLNLGEEFSGAQCLYLSEVKVILDVQDSKGTEVQNRASTNAVLAKTLEYVRNFSRY 79
Query: 139 KNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIP 180
+++ VR ++ K L +FE+A +ANLC E EEAKALIP
Sbjct: 80 NTIDSVREVRQIMG-KNLTQFEVAQMANLCCEEAEEAKALIP 120
>gi|399217783|emb|CCF74670.1| unnamed protein product [Babesia microti strain RI]
Length = 130
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 73/128 (57%), Gaps = 4/128 (3%)
Query: 76 VVEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERF 135
VV D +L EFE+ + L + E+H++L + N E + ++ + Y+ RF
Sbjct: 2 VVANDLSELNLGPEFEDYKCLNLCELHLILGDQIRLNPKRNEAAQ--QLLKSFYDYSGRF 59
Query: 136 RKFKNRETITSVRNLLTQKK-LHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQI 194
K K R I +R L ++ LH++E+A++ NL P++ +EAK+LIPS+ R E + QI
Sbjct: 60 SKLKYRNAIVDIRTSLEREGGLHEYEMASLVNLLPKSVQEAKSLIPSI-ARLPERRIVQI 118
Query: 195 LDDIQTKR 202
LD +++ R
Sbjct: 119 LDLLESYR 126
>gi|406867922|gb|EKD20959.1| RNA polymerase Rpb4 family protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 146
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 78/129 (60%), Gaps = 10/129 (7%)
Query: 75 QVVEEDAGDLQFPKEFENAETLLISE----VHMLLQHRKTQNENAEEEQEFSEVFQKTLT 130
Q EE + +L+ EF++ + L SE ++ L+ R+ +N E +E+ KT
Sbjct: 15 QGDEEASSELKLG-EFQDVDALTHSEAALVINALVTKRRMDKKNVNE----TELLIKTTD 69
Query: 131 YTERFRKFKNRETITSVRNLLT-QKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEE 189
Y + F +FK +E + +V LL+ K+L KFE A + +LC +T EEAK LIPSL+ + ++
Sbjct: 70 YLDHFARFKRKENVEAVERLLSAHKELAKFERAQLGSLCCDTSEEAKTLIPSLQDKIGDD 129
Query: 190 ELRQILDDI 198
+L+++LD+I
Sbjct: 130 DLQELLDEI 138
>gi|345566765|gb|EGX49707.1| hypothetical protein AOL_s00078g196 [Arthrobotrys oligospora ATCC
24927]
Length = 158
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 76/133 (57%), Gaps = 10/133 (7%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLLQ----HR-KTQNENAEEEQEFSEVFQKTLTYT 132
+E+AG EF+N +L SE +L+Q HR K N + E +EV KT Y
Sbjct: 28 DEEAGTELKLGEFQNVTSLTHSEARLLIQAVLSHRAKGPNADIGE----TEVLIKTKDYL 83
Query: 133 ERFRKFKNRETITSVRNLL-TQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEEL 191
E+F +FK +E +++V LL + L FE + + LC ET EEAK LIPS+ + +E+L
Sbjct: 84 EQFARFKKKENVSAVERLLQMEGGLASFEKSQLGTLCCETSEEAKTLIPSISDKKSDEDL 143
Query: 192 RQILDDIQTKRSL 204
+++LD+I R+
Sbjct: 144 QELLDEITKFRTF 156
>gi|429327486|gb|AFZ79246.1| DNA-directed RNA polymerase II 16 kDa subunit, putative [Babesia
equi]
Length = 130
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 73/127 (57%), Gaps = 8/127 (6%)
Query: 79 EDAGDLQFPKEFENAETLLISEVHMLL--QHRKTQNENAEEEQEFSEVFQKTLTYTERFR 136
+D+ + EF+N++ L + E+H++L Q R QN N Q + + + Y RF
Sbjct: 6 QDSNRIDLDPEFKNSKCLNLCELHLILGDQLRLHQNRNDNALQ----LIKASHEYASRFA 61
Query: 137 KFKNRETITSVRNLLTQKK-LHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQIL 195
K R I VR + + LH+FE+A+I NL P++ +EAK+LIPSL CR ++ + IL
Sbjct: 62 ILKYRNAIVDVRTTIERDGCLHEFEMASIVNLLPKSVDEAKSLIPSL-CRIPDDRINSIL 120
Query: 196 DDIQTKR 202
+ +++ R
Sbjct: 121 ELLESYR 127
>gi|340992794|gb|EGS23349.1| hypothetical protein CTHT_0010170 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 147
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 75/124 (60%), Gaps = 4/124 (3%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSE--VFQKTLTYTERF 135
EEDA L+ EF++ +TL +SE +++ + + + +E V KTL Y + F
Sbjct: 19 EEDAAKLKL-GEFQDVDTLTLSEASLVINALIAKRRKDAKGRPINETDVLIKTLEYLDAF 77
Query: 136 RKFKNRETITSVRNLLT-QKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQI 194
+FK +E + +V LL+ K+L KFE A I +LC ++ +E K L+PS+ + +E+L+++
Sbjct: 78 ARFKQKENVEAVERLLSAHKELTKFERAQIGSLCCDSADECKTLVPSIADKISDEDLQEL 137
Query: 195 LDDI 198
LD++
Sbjct: 138 LDEM 141
>gi|409040527|gb|EKM50014.1| hypothetical protein PHACADRAFT_105721 [Phanerochaete carnosa
HHB-10118-sp]
Length = 126
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 64/114 (56%), Gaps = 15/114 (13%)
Query: 75 QVVEEDAGDLQF-------PKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQK 127
QV +EDA L+ EF NA LLISEV LL++R ++E + V+ K
Sbjct: 11 QVEDEDAAALKLGSGMANLASEFNNAGCLLISEVKYLLENR-------DKEPPDTAVYNK 63
Query: 128 TLTYTERFRKFKNRETITSVRNLLTQK-KLHKFELAAIANLCPETPEEAKALIP 180
TL Y + F KF + ++VR L ++ L +FE A IANLCP EE+K++IP
Sbjct: 64 TLEYVKTFGKFNTTDAASAVRETLRREPALTQFETAQIANLCPADSEESKSIIP 117
>gi|398409710|ref|XP_003856320.1| hypothetical protein MYCGRDRAFT_98518 [Zymoseptoria tritici IPO323]
gi|339476205|gb|EGP91296.1| hypothetical protein MYCGRDRAFT_98518 [Zymoseptoria tritici IPO323]
Length = 159
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 74/132 (56%), Gaps = 8/132 (6%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRK 137
EE G+L+ + N + L +EV ++L+ + Q N + ++++ KT Y + F +
Sbjct: 29 EEATGNLRL-GDCANEQALSPAEVMLMLEQLERQPGNTHDPT--NDIYYKTREYCKHFAR 85
Query: 138 FKNRETITSVRNL---LTQKKLH--KFELAAIANLCPETPEEAKALIPSLECRFEEEELR 192
FK+ +IT V + LT + L +FE A +A LC +T EEA+ L+PSLE + +EEL+
Sbjct: 86 FKDNNSITQVNGISTELTSRGLGIVEFERAQLATLCCDTAEEARTLVPSLEGKIGDEELQ 145
Query: 193 QILDDIQTKRSL 204
LDDI R
Sbjct: 146 AALDDISKLRDF 157
>gi|154296757|ref|XP_001548808.1| hypothetical protein BC1G_12406 [Botryotinia fuckeliana B05.10]
gi|347836043|emb|CCD50615.1| hypothetical protein [Botryotinia fuckeliana]
Length = 146
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 70/115 (60%), Gaps = 9/115 (7%)
Query: 89 EFENAETLLISE----VHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETI 144
EF++ + L SE ++ L+ R+ +N E +E+ KT Y + F +FK +E +
Sbjct: 28 EFQDVDALTHSEAALVINALVAKRRGDRKNVNE----TEILSKTQEYLDHFARFKRKENV 83
Query: 145 TSVRNLL-TQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDI 198
+V LL ++ +L KFE A + +LC +T +EAK LIPSL+ + +++L ++LD+I
Sbjct: 84 EAVERLLGSRGELAKFERAQLGSLCCDTADEAKTLIPSLQDKISDDDLTELLDEI 138
>gi|156050981|ref|XP_001591452.1| hypothetical protein SS1G_08079 [Sclerotinia sclerotiorum 1980]
gi|154692478|gb|EDN92216.1| hypothetical protein SS1G_08079 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 146
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 70/115 (60%), Gaps = 9/115 (7%)
Query: 89 EFENAETLLISE----VHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETI 144
EF++ + L SE ++ L+ R+ +N E +E+ KT Y + F +FK +E +
Sbjct: 28 EFQDVDALTHSEAALVINALVAKRRGDRKNVNE----TEILSKTQEYLDHFARFKRKENV 83
Query: 145 TSVRNLL-TQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDI 198
+V LL ++ +L KFE A + +LC +T +EAK LIPSL+ + +++L ++LD+I
Sbjct: 84 EAVERLLGSRSELAKFERAQLGSLCCDTADEAKTLIPSLQDKISDDDLTELLDEI 138
>gi|452847857|gb|EME49789.1| hypothetical protein DOTSEDRAFT_76985 [Dothistroma septosporum
NZE10]
Length = 204
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 68/122 (55%), Gaps = 9/122 (7%)
Query: 89 EFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVR 148
E + L +EV ++L Q E A + +E++ KT Y F +FK+ +I V
Sbjct: 87 EMSGEQALSPAEVTLMLD----QLEKARGQPNHTEIYYKTRDYCRHFARFKDDNSIRQVN 142
Query: 149 NL---LTQKKLH--KFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKRS 203
+ LT+++L +FE A +A LC +TPEEA+ L+PSLE + ++EL +L+DI R
Sbjct: 143 QISTELTERELGITQFERAQLATLCCDTPEEARTLVPSLEGKIADDELEIVLNDIAKLRD 202
Query: 204 LQ 205
Q
Sbjct: 203 FQ 204
>gi|296424796|ref|XP_002841932.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638184|emb|CAZ86123.1| unnamed protein product [Tuber melanosporum]
Length = 146
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 73/126 (57%), Gaps = 8/126 (6%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLL----QHRKTQNENAEEEQEFSEVFQKTLTYTE 133
+E+AG EF+N +L +SE +L HR+ Q + + +EV KT Y E
Sbjct: 17 DEEAGTELKLGEFQNVSSLTLSETKEVLTAVFNHRREQGKFKVPD---NEVVTKTQQYLE 73
Query: 134 RFRKFKNRETITSVRNLLT-QKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELR 192
F +FK RE++ +V +L Q L FE + + LC +T +EAK LIPS+E + +E+L+
Sbjct: 74 VFSRFKQRESVQAVERILALQTDLVAFEKSQLGTLCCDTADEAKVLIPSIEGKKSDEDLQ 133
Query: 193 QILDDI 198
++LD+I
Sbjct: 134 ELLDEI 139
>gi|342319350|gb|EGU11299.1| Hypothetical Protein RTG_02771 [Rhodotorula glutinis ATCC 204091]
Length = 105
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 60/110 (54%), Gaps = 10/110 (9%)
Query: 96 LLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVRNLLTQKK 155
L ISEV ++L+ +NA V+ KT Y + F +F + ET ++VR+
Sbjct: 2 LTISEVKLVLESLDNPPDNA--------VYNKTKDYVDTFARFHDHETASNVRSSFPNPP 53
Query: 156 LHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKRSLQ 205
FE + NLCP EEAKAL+PS++ E+++L+Q LDD+ R Q
Sbjct: 54 FQFFEQVQLVNLCPMEAEEAKALVPSIQV--EDDQLQQYLDDMTRARKAQ 101
>gi|336381198|gb|EGO22350.1| hypothetical protein SERLADRAFT_339075 [Serpula lacrymans var.
lacrymans S7.9]
Length = 116
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 62/111 (55%), Gaps = 15/111 (13%)
Query: 78 EEDAGDLQFP-------KEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLT 130
EEDA L+ EF NA LLISEV LL EN +++ + V+ KTL
Sbjct: 12 EEDASALKLGAVKRLHWSEFNNAGCLLISEVKYLL-------ENRDKDAPDTAVYNKTLE 64
Query: 131 YTERFRKFKNRETITSVRNLLTQK-KLHKFELAAIANLCPETPEEAKALIP 180
Y + F KF ++ ++VR L ++ L +FE A IANLCP EEAK++IP
Sbjct: 65 YVKTFTKFNTTDSASAVRETLRREPALTQFETAQIANLCPGDAEEAKSVIP 115
>gi|358055256|dbj|GAA98764.1| hypothetical protein E5Q_05452 [Mixia osmundae IAM 14324]
Length = 477
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 58/105 (55%)
Query: 79 EDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKF 138
ED L+ KEFE A L+I+EV ML+ ++ + E V +K Y ERF
Sbjct: 16 EDVAQLKLGKEFEKASCLMINEVKMLIDNQGEDAKRVSREPGQLNVTKKMWEYVERFSPG 75
Query: 139 KNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLE 183
I +R+ L ++ L FE ++ANL P+T EEAKA++PS++
Sbjct: 76 LEPSDIARLRSALLRESLADFEACSLANLRPKTVEEAKAILPSIQ 120
>gi|325180261|emb|CCA14664.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 155
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 85/153 (55%), Gaps = 22/153 (14%)
Query: 71 HVLDQVVEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLT 130
HV+D EDA +L ++F + L +EV ++L+ +K EN +E++ + VFQKT +
Sbjct: 7 HVVDT---EDAAELNLGEDFRDETCLSNAEVAVILEKQKQDYEN--QEKQLTNVFQKTYS 61
Query: 131 YTERFRKFK----NRETITSVRNLL-------------TQKKLHKFELAAIANLCPETPE 173
Y +RF K N+ ++T +R L + +L +FE++ ++NL PE E
Sbjct: 62 YVQRFSGTKDPVSNQASVTELREALMSLVFNREIDERVVEIRLEEFEISCLSNLNPEEVE 121
Query: 174 EAKALIPSLECRFEEEELRQILDDIQTKRSLQY 206
EA +LIPSL R+ EEE+ +IL + K + Y
Sbjct: 122 EAVSLIPSLSKRYAEEEIEEILGIVSRKAARMY 154
>gi|440639230|gb|ELR09149.1| DNA-directed RNA polymerase II subunit D [Geomyces destructans
20631-21]
Length = 149
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 75/134 (55%), Gaps = 8/134 (5%)
Query: 75 QVVEEDAGDLQFPKEFENAETLLISE----VHMLLQHRKTQNENAEEEQEFSEVFQKTLT 130
Q EE +L+ EF++ + L SE ++ L+ RK ++ SE+ KTL
Sbjct: 16 QGDEEAGAELKLG-EFQDVDALTHSEAALVINALVAKRKMDKDSKRVND--SEMLNKTLE 72
Query: 131 YTERFRKFKNRETITSVRNLLTQK-KLHKFELAAIANLCPETPEEAKALIPSLECRFEEE 189
Y + F +FK +E + +V LL+ +L KFE A + +LC E EEAK L+PSL + ++
Sbjct: 73 YLDHFARFKRKENVEAVERLLSAHPELAKFERAQLGSLCCELAEEAKTLVPSLADKISDD 132
Query: 190 ELRQILDDIQTKRS 203
+L+++L++I R
Sbjct: 133 DLQELLNEINKHRG 146
>gi|290996786|ref|XP_002680963.1| predicted protein [Naegleria gruberi]
gi|284094585|gb|EFC48219.1| predicted protein [Naegleria gruberi]
Length = 141
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 73/129 (56%), Gaps = 17/129 (13%)
Query: 89 EFENAETLLISEVHMLLQHRKTQNENAEEEQE--FSEVFQKTLTYTERFRKFKNRETITS 146
+F++ + L ISEV +L +K E E+EQ ++VF K+LTY RF + ET +
Sbjct: 17 DFKDRQCLTISEVAQMLSKKK---EEVEQEQTDYINDVFDKSLTYARRFGGGLSVETTMA 73
Query: 147 VRNLLTQ-----------KKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQIL 195
+++ L + +KL F++A +ANL P EEA LIPSL+ F+E E+ +L
Sbjct: 74 IKSALGRATVTLKDSQERRKLQPFQIAQLANLMPGDAEEAATLIPSLKA-FDETEIGNLL 132
Query: 196 DDIQTKRSL 204
D+++ + +
Sbjct: 133 KDLESLKGI 141
>gi|388857176|emb|CCF49189.1| related to Rpb4-16 kD subunit of DNA-directed RNA polymerase II
[Ustilago hordei]
Length = 167
Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 65/136 (47%), Gaps = 26/136 (19%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHML------LQHRKTQNENAEEEQEFSEVFQKTLTY 131
+EDA + EF++A LLISEV ++ L T + ++ + VF KT Y
Sbjct: 15 DEDAAIGKLGAEFDDAGCLLISEVELVFSQPGALNSSTTSTADGSRDEVATAVFSKTKDY 74
Query: 132 TERFRKFKNRETITSVRNLL--------------------TQKKLHKFELAAIANLCPET 171
F ++K+ TI +R LL T +L +FE+A +ANLC
Sbjct: 75 VSEFSRYKDPNTIREIRELLLKHARLDERQVDEEANEIQQTGLQLTQFEMAQLANLCITE 134
Query: 172 PEEAKALIPSLECRFE 187
EEAKALIP+L R E
Sbjct: 135 VEEAKALIPTLATRDE 150
>gi|303321770|ref|XP_003070879.1| RNA polymerase Rpb4 family protein [Coccidioides posadasii C735
delta SOWgp]
gi|240110576|gb|EER28734.1| RNA polymerase Rpb4 family protein [Coccidioides posadasii C735
delta SOWgp]
Length = 225
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 68/121 (56%), Gaps = 9/121 (7%)
Query: 89 EFENAETLLISE----VHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETI 144
EF+N TL +SE ++ +L RK N EE E KT Y E F +FK +E I
Sbjct: 107 EFQNVPTLSLSEARLVINKVLDLRKKSNNKYEER----ETLIKTQDYLEVFARFKEKENI 162
Query: 145 TSVRNLLT-QKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKRS 203
+V LL+ +L FE + + +LC + EEAKALIPS+ + + +L+++LD++ R+
Sbjct: 163 EAVERLLSAHTELEFFERSQLGSLCCDNAEEAKALIPSIGNKISDADLQELLDELTKLRN 222
Query: 204 L 204
Sbjct: 223 F 223
>gi|428183244|gb|EKX52102.1| DNA-directed RNA polymerase II subunit, RPB4 [Guillardia theta
CCMP2712]
Length = 141
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 3/121 (2%)
Query: 79 EDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKF 138
ED +L F +FE+AE +L +EV +++ E E ++SE+ Q T + F +F
Sbjct: 16 EDITNLYFGADFEDAEAMLNAEVKVIID--SINEEKDLEMSDWSELMQNTTSNVSTFGRF 73
Query: 139 KNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDI 198
+++ +I + + L H FE A NL P +EAK LIPSL RF ++ + + +
Sbjct: 74 QDKTSIATCKQELVDLGCHTFEAACFGNLQPANADEAKRLIPSLT-RFTDDAVEMMCQCV 132
Query: 199 Q 199
Q
Sbjct: 133 Q 133
>gi|84995276|ref|XP_952360.1| RNA polymerase 16kd subunit, RPB4-like [Theileria annulata strain
Ankara]
gi|65302521|emb|CAI74628.1| RNA polymerase 16kd subunit, RPB4-like, putative [Theileria
annulata]
Length = 130
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 70/126 (55%), Gaps = 8/126 (6%)
Query: 80 DAGDLQFPKEFENAETLLISEVHMLL--QHRKTQNENAEEEQEFSEVFQKTLTYTERFRK 137
D EF+N++ L + E+H++L Q R N N Q + + Y RF
Sbjct: 7 DPTKFDLDPEFKNSKCLNLCELHLILGDQLRLHHNRNDTAVQ----FIKTSHEYASRFAI 62
Query: 138 FKNRETITSVRNLLTQKKL-HKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
K R I +R + + L H+FE+A++ NL P++ +EAK+LIPSL CR ++++ +IL+
Sbjct: 63 LKCRNAIVDIRTTIERDGLLHEFEMASLVNLLPKSADEAKSLIPSL-CRIPDDKINKILE 121
Query: 197 DIQTKR 202
+++ R
Sbjct: 122 LLESYR 127
>gi|72255603|gb|AAZ66921.1| 117M18_2 [Brassica rapa]
Length = 329
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 64/123 (52%), Gaps = 28/123 (22%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEE---QEFS-----------E 123
EE+A +L+ EF A+ L+ EV ++L+H+ Q + E+ Q F+
Sbjct: 6 EENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQVSEDPMNQRFTVKLAIKRYRSCW 65
Query: 124 VFQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLE 183
VF+K+L Y +RF ++KN + + +L + NLCPET EEA A++PSL+
Sbjct: 66 VFEKSLQYVKRFSRYKNPDAVR--------------QLCVLGNLCPETAEEAVAMVPSLK 111
Query: 184 CRF 186
F
Sbjct: 112 SIF 114
>gi|430814348|emb|CCJ28407.1| unnamed protein product [Pneumocystis jirovecii]
Length = 168
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 76/153 (49%), Gaps = 22/153 (14%)
Query: 75 QVVEEDAGDLQ-----------FPK---------EFENAETLLISEVHMLLQHRKTQNEN 114
+V EEDA LQ FP+ EF NA L +SE ++L+ +Q +
Sbjct: 15 RVGEEDASRLQLGEGNCYLVPFFPEKKAYKMAFLEFTNATCLSVSEAKIILEAVLSQRQK 74
Query: 115 A-EEEQEFSEVFQKTLTYTERFRKFKNRETITSV-RNLLTQKKLHKFELAAIANLCPETP 172
+E ++V +KT Y F +FK +E++ + R L LH FE A + LC E
Sbjct: 75 ELGDEIVMTDVMRKTKDYLNIFARFKTQESVHAAERVLRGDPDLHSFETAQLGTLCCEEA 134
Query: 173 EEAKALIPSLECRFEEEELRQILDDIQTKRSLQ 205
EEA+ L+PSL + +E L+ +LD++ R Q
Sbjct: 135 EEARTLVPSLADKKSDEALQTLLDELSNLRRFQ 167
>gi|221053207|ref|XP_002257978.1| DNA-directed RNA polymerase I subunit [Plasmodium knowlesi strain
H]
gi|193807810|emb|CAQ38515.1| DNA-directed RNA polymerase I subunit, putative [Plasmodium
knowlesi strain H]
Length = 132
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 66/122 (54%), Gaps = 8/122 (6%)
Query: 80 DAGDLQFPKEFENAETLLISEVHMLL--QHRKTQNENAEEEQEFSEVFQKTLTYTERFRK 137
D +L EF+N + L + E+ ++L Q R T N E + + + + Y +F
Sbjct: 8 DVKNLDLGPEFKNCKCLNLCELQLILGDQLRLTSKRNEEAQT----LIKSSFDYANKFAT 63
Query: 138 FKNRETITSVR-NLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
KNR +I VR NL +LH++E+A + NL P+T +EA+ IPSL R +E L IL+
Sbjct: 64 IKNRSSIVDVRTNLERIGELHEYEIAMLVNLLPKTAQEARYFIPSL-IRLSDETLNSILE 122
Query: 197 DI 198
+
Sbjct: 123 HL 124
>gi|209882974|ref|XP_002142921.1| DNA-directed RNA polymerase II subunit RPB4 [Cryptosporidium muris
RN66]
gi|209558527|gb|EEA08572.1| DNA-directed RNA polymerase II subunit RPB4 , putative
[Cryptosporidium muris RN66]
Length = 130
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
Query: 120 EFSEVFQKTLTYTERFRKFKNRETITSVRNLLTQ-KKLHKFELAAIANLCPETPEEAKAL 178
E + + + Y +F K KNR ++ +R L + K+LH++E++ + NL P+TP+E KAL
Sbjct: 44 EAHNLMKSSHQYATKFGKIKNRASVMLLREALDENKELHEYEISCLVNLLPKTPDETKAL 103
Query: 179 IPSLECRFEEEELRQILDDIQTKRSLQY 206
IPSL R ++E+ +IL +++ R+ Y
Sbjct: 104 IPSL-ARLPDDEIERILAHLESHRTYSY 130
>gi|50302645|ref|XP_451258.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49640389|emb|CAH02846.1| KLLA0A05797p [Kluyveromyces lactis]
Length = 200
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 51/77 (66%)
Query: 122 SEVFQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPS 181
++ ++T+ Y F +F+++ET+T+V LL+ LH FE+A + +L E +EAK LIPS
Sbjct: 117 NQALKQTMIYLTNFSRFRDQETVTAVSQLLSSTGLHPFEVAQLGSLSCEDADEAKTLIPS 176
Query: 182 LECRFEEEELRQILDDI 198
L + +E+L +IL ++
Sbjct: 177 LGTKISDEDLERILKEL 193
>gi|320040371|gb|EFW22304.1| RNA polymerase Rpb4 [Coccidioides posadasii str. Silveira]
Length = 149
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 68/121 (56%), Gaps = 9/121 (7%)
Query: 89 EFENAETLLISE----VHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETI 144
EF+N TL +SE ++ +L RK N EE E KT Y E F +FK +E I
Sbjct: 31 EFQNVPTLSLSEARLVINKVLDLRKKSNNKYEER----ETLIKTQDYLEVFARFKEKENI 86
Query: 145 TSVRNLLT-QKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKRS 203
+V LL+ +L FE + + +LC + EEAKALIPS+ + + +L+++LD++ R+
Sbjct: 87 EAVERLLSAHTELEFFERSQLGSLCCDNAEEAKALIPSIGSKISDADLQELLDELTKLRN 146
Query: 204 L 204
Sbjct: 147 F 147
>gi|255716330|ref|XP_002554446.1| KLTH0F05544p [Lachancea thermotolerans]
gi|238935829|emb|CAR24009.1| KLTH0F05544p [Lachancea thermotolerans CBS 6340]
Length = 197
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 52/83 (62%)
Query: 122 SEVFQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPS 181
++ ++T+ Y F +FK++ET+T+V LL LH FE+A + +L E +EAK LIPS
Sbjct: 114 NQALKQTMVYLTNFSRFKDQETVTAVTQLLQSTNLHPFEIAQLGSLSCEDADEAKTLIPS 173
Query: 182 LECRFEEEELRQILDDIQTKRSL 204
L + +E+L +IL ++ +L
Sbjct: 174 LGNKISDEDLERILKELSNLETL 196
>gi|390371162|dbj|GAB65043.1| DNA-directed RNA polymerase II 16 kDa subunit [Plasmodium cynomolgi
strain B]
Length = 132
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 66/122 (54%), Gaps = 8/122 (6%)
Query: 80 DAGDLQFPKEFENAETLLISEVHMLL--QHRKTQNENAEEEQEFSEVFQKTLTYTERFRK 137
D +L EF+N + L + E+ ++L Q R T N E + + + + Y +F
Sbjct: 8 DVKNLDLGPEFKNCKCLNLCELQLILGDQLRLTSKRNEEAQT----LIKSSFDYANKFAT 63
Query: 138 FKNRETITSVR-NLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
KNR +I VR NL +LH++E+A + NL P+T +EA+ IPSL R +E L IL+
Sbjct: 64 IKNRSSIVDVRTNLERIGELHEYEIAMLVNLLPKTVQEARYFIPSL-IRLSDETLNSILE 122
Query: 197 DI 198
+
Sbjct: 123 HL 124
>gi|443900174|dbj|GAC77501.1| hypothetical protein PANT_26d00080 [Pseudozyma antarctica T-34]
Length = 166
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 73/147 (49%), Gaps = 25/147 (17%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLL-QHRKTQNENAEEEQEFSEVFQKTLTYTERFR 136
+EDA + +EF++A LLISEV ++ Q + A + + VF KT Y F
Sbjct: 17 DEDAAIGKLGEEFDDAGCLLISEVELVFSQPDALGDGTAGRDDVATAVFSKTKDYVTEFS 76
Query: 137 KFKNRETITSVRNLL----------------------TQKKLHKFELAAIANLCPETPEE 174
++K+ TI +R LL T +L +FE+A +ANLC +E
Sbjct: 77 RYKDPNTIREIRELLLKHAKLDDKPVDEDGNEIDAPDTGLQLTQFEMAQLANLCITEVDE 136
Query: 175 AKALIPSLECRFEE--EELRQILDDIQ 199
AKALIP+L R + + L Q LD+++
Sbjct: 137 AKALIPTLATRDDALLDSLLQELDNVR 163
>gi|156093884|ref|XP_001612980.1| DNA-directed RNA polymerase II 16 kDa subunit [Plasmodium vivax
Sal-1]
gi|148801854|gb|EDL43253.1| DNA-directed RNA polymerase II 16 kDa subunit, putative [Plasmodium
vivax]
Length = 132
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 66/122 (54%), Gaps = 8/122 (6%)
Query: 80 DAGDLQFPKEFENAETLLISEVHMLL--QHRKTQNENAEEEQEFSEVFQKTLTYTERFRK 137
D +L EF+N + L + E+ ++L Q R T N E + + + + Y +F
Sbjct: 8 DVKNLDLGPEFKNCKCLNLCELQLILGDQLRLTSKRNEEAQA----LIKSSFDYANKFAT 63
Query: 138 FKNRETITSVR-NLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
KNR +I VR NL +LH++E+A + NL P+T +EA+ IPSL R +E L IL+
Sbjct: 64 IKNRSSIVDVRTNLERIGELHEYEIAMLVNLLPKTVQEARYFIPSL-IRLGDETLNSILE 122
Query: 197 DI 198
+
Sbjct: 123 HL 124
>gi|164659690|ref|XP_001730969.1| hypothetical protein MGL_1968 [Malassezia globosa CBS 7966]
gi|159104867|gb|EDP43755.1| hypothetical protein MGL_1968 [Malassezia globosa CBS 7966]
Length = 155
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 74/142 (52%), Gaps = 20/142 (14%)
Query: 79 EDA--GDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFR 136
EDA G L EF++A LL+SEVH+ E+++ + S V QKT Y + F
Sbjct: 17 EDASTGKLGPVVEFQDAGCLLVSEVHLFFSR---PGESSDRDDGLSAVTQKTKEYVDEFS 73
Query: 137 KFKNRETITSVRNLLTQK--------------KLHKFELAAIANLCPETPEEAKALIPSL 182
++K++ TI VR LL + +L +FE+A +ANL +EA+ LIP+L
Sbjct: 74 RYKDQSTIREVRALLIKHAAQPDMEDEDEKGLQLTQFEMAQLANLSVTDIDEARTLIPTL 133
Query: 183 ECRFEEEELRQILDDIQTKRSL 204
+ ++ +L +L ++ RS
Sbjct: 134 ASK-DDAQLESLLHELTAIRSF 154
>gi|121705116|ref|XP_001270821.1| polymerase (RNA) II (DNA directed) polypeptide D [Aspergillus
clavatus NRRL 1]
gi|119398967|gb|EAW09395.1| polymerase (RNA) II (DNA directed) polypeptide D [Aspergillus
clavatus NRRL 1]
Length = 148
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 65/114 (57%), Gaps = 1/114 (0%)
Query: 91 ENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVRNL 150
+N TL +SE +++ ++ E E KTL Y E F +FK+ E I +V L
Sbjct: 32 QNTHTLSLSEARLVINKVLENKRRGGKKYEEPENLTKTLDYLEVFARFKDEENIKAVERL 91
Query: 151 L-TQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKRS 203
L + +L FE + + +LC + EEAK+LIPSL+ + + EL+++LD++ R+
Sbjct: 92 LNSHTELEMFERSQLGSLCCDNAEEAKSLIPSLQHKISDGELQELLDELTKLRN 145
>gi|119195963|ref|XP_001248585.1| hypothetical protein CIMG_02356 [Coccidioides immitis RS]
gi|392862210|gb|EAS37168.2| polymerase II polypeptide D [Coccidioides immitis RS]
Length = 149
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 68/121 (56%), Gaps = 9/121 (7%)
Query: 89 EFENAETLLISE----VHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETI 144
EF+N TL +SE ++ +L RK N EE E KT Y E F +FK +E I
Sbjct: 31 EFQNVPTLSLSEARLVINKVLDLRKKSNNKYEER----ETLIKTQDYLEVFARFKEKENI 86
Query: 145 TSVRNLLT-QKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKRS 203
+V LL+ +L FE + + +LC + EEAKALIPS+ + + +L+++LD++ R+
Sbjct: 87 EAVERLLSAHTELEFFERSQLGSLCCDNAEEAKALIPSIGNKISDADLQELLDELTKLRN 146
Query: 204 L 204
Sbjct: 147 F 147
>gi|237837463|ref|XP_002368029.1| DNA-directed RNA polymerase II, putative [Toxoplasma gondii ME49]
gi|211965693|gb|EEB00889.1| DNA-directed RNA polymerase II, putative [Toxoplasma gondii ME49]
gi|221509208|gb|EEE34777.1| conserved hypothetical protein [Toxoplasma gondii VEG]
Length = 185
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 86/160 (53%), Gaps = 10/160 (6%)
Query: 48 LSKSVPPRTPYSDRVSIGYIIMT--HVLDQVVEEDAGDLQFPKEFENAETLLISEVHMLL 105
+S+++ P DR+ ++ +V+ + + Q +EF +A+ L + E+ ++L
Sbjct: 27 VSQTLLPSLVRGDRLQCPFVFSAGLYVVSLPLSGFGSNEQTRQEFRSAKCLNLCELQLIL 86
Query: 106 --QHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVRNLLTQKK-LHKFELA 162
Q R +AE + + + + Y+ RF K + R I +RN L ++ LH+FE+A
Sbjct: 87 SDQLRLPNTRSAEAQG----LLKASYDYSTRFAKLRTRNVIVDLRNNLEREGDLHQFEIA 142
Query: 163 AIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKR 202
+ NL P++ +EAKALIP+L R L++ILD ++ R
Sbjct: 143 QLVNLLPKSLDEAKALIPTLN-RLPGPRLQRILDLLEMFR 181
>gi|45185936|ref|NP_983652.1| ACR250Wp [Ashbya gossypii ATCC 10895]
gi|44981726|gb|AAS51476.1| ACR250Wp [Ashbya gossypii ATCC 10895]
gi|374106859|gb|AEY95768.1| FACR250Wp [Ashbya gossypii FDAG1]
Length = 192
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 52/83 (62%)
Query: 122 SEVFQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPS 181
++ ++T+ Y F +F+++ET+T+V LL LH FE+A + +L E +EAK L+PS
Sbjct: 109 NQALKQTMVYLTNFARFRDQETVTAVTQLLASTGLHPFEIAQLGSLACEDADEAKTLVPS 168
Query: 182 LECRFEEEELRQILDDIQTKRSL 204
L + +E+L +IL ++ +L
Sbjct: 169 LGNKISDEDLERILKELSNLETL 191
>gi|171680343|ref|XP_001905117.1| hypothetical protein [Podospora anserina S mat+]
gi|170939798|emb|CAP65024.1| unnamed protein product [Podospora anserina S mat+]
Length = 220
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 64/109 (58%), Gaps = 4/109 (3%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRK 137
EE+AG + EF++ +TL +SE +++ + + +++ ++ +TL Y + F +
Sbjct: 92 EEEAGAVLKLGEFQDVDTLTLSEASLVINALMAKRKKDRKDRNETDALNQTLDYLDAFAR 151
Query: 138 FKNRETITSVRNLL-TQKKLHKFELAAI---ANLCPETPEEAKALIPSL 182
FK +E + +V LL T K+L KFE A I +LC +T +E K LIPSL
Sbjct: 152 FKAKENVEAVERLLSTHKELSKFERAQIVPLGSLCCDTADECKTLIPSL 200
>gi|363753130|ref|XP_003646781.1| hypothetical protein Ecym_5193 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890417|gb|AET39964.1| hypothetical protein Ecym_5193 [Eremothecium cymbalariae
DBVPG#7215]
Length = 196
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 52/83 (62%)
Query: 122 SEVFQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPS 181
++ ++T+ Y F +F+++ET+T+V LL LH FE+A + +L E +EAK LIPS
Sbjct: 113 NQALKQTMIYLTNFSRFRDQETVTAVTQLLQSTGLHPFEVAQLGSLSCEDADEAKTLIPS 172
Query: 182 LECRFEEEELRQILDDIQTKRSL 204
L + +E+L +IL ++ +L
Sbjct: 173 LNNKISDEDLERILKELSNLETL 195
>gi|403221954|dbj|BAM40086.1| RNA polymerase subunit RPB4-like protein [Theileria orientalis
strain Shintoku]
Length = 130
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 69/126 (54%), Gaps = 8/126 (6%)
Query: 80 DAGDLQFPKEFENAETLLISEVHMLL--QHRKTQNENAEEEQEFSEVFQKTLTYTERFRK 137
D + EF+N++ L + E+H++L Q R N N Q + + Y RF
Sbjct: 7 DPSKFELDPEFKNSKCLNLCELHLILGDQLRLHHNRNDTAIQ----FIKTSHEYASRFSI 62
Query: 138 FKNRETITSVRNLLTQKKL-HKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
K R I +R + + L H+FE+A++ NL P++ EEAK+LIPSL R ++++ IL+
Sbjct: 63 LKCRNAIVDIRTTIERDGLLHEFEMASLVNLLPKSVEEAKSLIPSLS-RISDDKINSILE 121
Query: 197 DIQTKR 202
+++ R
Sbjct: 122 LLESYR 127
>gi|70923994|ref|XP_734917.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|70926439|ref|XP_735759.1| DNA-directed RNA polymerase II 16 kDa subunit [Plasmodium chabaudi
chabaudi]
gi|56508101|emb|CAH76309.1| hypothetical protein PC000412.01.0 [Plasmodium chabaudi chabaudi]
gi|56509703|emb|CAH86732.1| DNA-directed RNA polymerase II 16 kDa subunit, putative [Plasmodium
chabaudi chabaudi]
Length = 133
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 65/122 (53%), Gaps = 8/122 (6%)
Query: 80 DAGDLQFPKEFENAETLLISEVHMLL--QHRKTQNENAEEEQEFSEVFQKTLTYTERFRK 137
D DL EF+N + L + E+ ++L Q R T N + + + + + Y RF
Sbjct: 9 DIQDLNLGPEFQNCKCLNLCELQLILGDQLRLTSKRNEDAQA----LIRSSFDYANRFAT 64
Query: 138 FKNRETITSVR-NLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
KNR +I +R NL +L+++E+A + NL P+T EA+ IPSL R EE L IL+
Sbjct: 65 IKNRSSIVDIRTNLERIGELYEYEIAMLVNLLPKTILEARYFIPSL-IRLNEETLNSILE 123
Query: 197 DI 198
+
Sbjct: 124 HL 125
>gi|124800957|ref|XP_001349565.1| DNA-directed RNA polymerase II 16 kDa subunit, putative [Plasmodium
falciparum 3D7]
gi|3845133|gb|AAC71838.1| DNA-directed RNA polymerase II 16 kDa subunit, putative [Plasmodium
falciparum 3D7]
Length = 132
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 65/123 (52%), Gaps = 8/123 (6%)
Query: 77 VEEDAGDLQFPKEFENAETLLISEVHMLL--QHRKTQNENAEEEQEFSEVFQKTLTYTER 134
+ D +L +F+N + L + E+ ++L Q R T N E + + + + Y +
Sbjct: 5 INGDIKNLDLGPDFKNCKCLNLCELQLILGDQLRLTSKRNEEAQA----LIKSSYDYANK 60
Query: 135 FRKFKNRETITSVR-NLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQ 193
F KNR +I +R NL LH++E+A + NL P+T EA+ LIPSL R +E L
Sbjct: 61 FAAIKNRSSIVDIRTNLERIGDLHEYEIAMLVNLLPKTILEARYLIPSL-IRLNDETLNS 119
Query: 194 ILD 196
IL+
Sbjct: 120 ILE 122
>gi|169767854|ref|XP_001818398.1| polymerase (RNA) II (DNA directed) polypeptide D [Aspergillus
oryzae RIB40]
gi|238484773|ref|XP_002373625.1| polymerase (RNA) II (DNA directed) polypeptide D [Aspergillus
flavus NRRL3357]
gi|83766253|dbj|BAE56396.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220701675|gb|EED58013.1| polymerase (RNA) II (DNA directed) polypeptide D [Aspergillus
flavus NRRL3357]
gi|391870620|gb|EIT79800.1| RNA polymerase II, fourth largest subunit [Aspergillus oryzae
3.042]
Length = 148
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 65/114 (57%), Gaps = 1/114 (0%)
Query: 91 ENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVRNL 150
+N TL +SE +++ ++ E E KTL Y E F +FK+ E I +V L
Sbjct: 32 QNTHTLSLSEARLVINKVLENKRRGGKKYEEPENLTKTLDYLEVFARFKDEENIKAVERL 91
Query: 151 L-TQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKRS 203
L + +L FE + + +LC + EEAK+LIPSL+ + + +L+++LD++ R+
Sbjct: 92 LNSHTELEMFERSQLGSLCCDNAEEAKSLIPSLQHKISDGDLQELLDELTKLRN 145
>gi|156088653|ref|XP_001611733.1| RNA polymerase Rpb4 family protein [Babesia bovis]
gi|154798987|gb|EDO08165.1| RNA polymerase Rpb4 family protein [Babesia bovis]
Length = 129
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 75/127 (59%), Gaps = 16/127 (12%)
Query: 84 LQFPKEFENAETLLISEVHMLL------QHRKTQNENAEEEQEFSEVFQKTLTYTERFRK 137
++ +E +NA+ L + E+H++L QH++ NENA++ + + + Y RF
Sbjct: 10 VEVDEELKNAKCLNLCELHLILGDQLRLQHKR--NENAKQ------LIKTSHEYASRFAI 61
Query: 138 FKNRETITSVRNLLTQK-KLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
K R I +R + ++ LH+FE+A++ NL P++ +EAK+LIPSL R +E + IL+
Sbjct: 62 LKFRSAIVDIRTTIEREGSLHEFEMASVVNLLPKSVDEAKSLIPSL-WRIPDERIDDILE 120
Query: 197 DIQTKRS 203
++ R+
Sbjct: 121 LLEGYRA 127
>gi|145233803|ref|XP_001400274.1| polymerase (RNA) II (DNA directed) polypeptide D [Aspergillus niger
CBS 513.88]
gi|134057210|emb|CAK44473.1| unnamed protein product [Aspergillus niger]
gi|358367833|dbj|GAA84451.1| polymerase (RNA) II (DNA directed) polypeptide D [Aspergillus
kawachii IFO 4308]
Length = 148
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 65/114 (57%), Gaps = 1/114 (0%)
Query: 91 ENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVRNL 150
+N TL +SE +++ ++ E E KTL Y E F +FK+ E I +V L
Sbjct: 32 QNTHTLSLSEARLVINKVLENKRRGGKKYEEPENLTKTLDYLEVFARFKDEENIKAVERL 91
Query: 151 L-TQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKRS 203
L + +L FE + + +LC + EEAK+LIPSL+ + + +L+++LD++ R+
Sbjct: 92 LNSHTELEMFERSQLGSLCCDNAEEAKSLIPSLQHKISDGDLQELLDELTKLRN 145
>gi|71000204|ref|XP_754810.1| polymerase (RNA) II (DNA directed) polypeptide D [Aspergillus
fumigatus Af293]
gi|119492539|ref|XP_001263635.1| polymerase (RNA) II (DNA directed) polypeptide D [Neosartorya
fischeri NRRL 181]
gi|66852447|gb|EAL92772.1| polymerase (RNA) II (DNA directed) polypeptide D [Aspergillus
fumigatus Af293]
gi|119411795|gb|EAW21738.1| polymerase (RNA) II (DNA directed) polypeptide D [Neosartorya
fischeri NRRL 181]
gi|159127819|gb|EDP52934.1| polymerase (RNA) II (DNA directed) polypeptide D [Aspergillus
fumigatus A1163]
Length = 148
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 65/114 (57%), Gaps = 1/114 (0%)
Query: 91 ENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVRNL 150
+N TL +SE +++ ++ E E KTL Y E F +FK+ E I +V L
Sbjct: 32 QNTHTLSLSEARLVINKVLENKRRGGKKYEEPENLTKTLDYLEVFARFKDEENIKAVERL 91
Query: 151 L-TQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKRS 203
L + +L FE + + +LC + EEAK+LIPSL+ + + +L+++LD++ R+
Sbjct: 92 LNSHTELEMFERSQLGSLCCDNAEEAKSLIPSLQHKISDADLQELLDELTKLRN 145
>gi|221488711|gb|EEE26925.1| conserved hypothetical protein [Toxoplasma gondii GT1]
Length = 185
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 69/118 (58%), Gaps = 8/118 (6%)
Query: 88 KEFENAETLLISEVHMLL--QHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETIT 145
+EF +A+ L + E+ ++L Q R +AE + + + + Y+ RF K + R I
Sbjct: 69 QEFRSAKCLNLCELQLILSDQLRLPNTRSAEAQG----LLKASYDYSTRFAKLRTRNVIV 124
Query: 146 SVRNLLTQKK-LHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKR 202
+RN L ++ LH+FE+A + NL P++ +EAKALIP+L R L++ILD ++ R
Sbjct: 125 DLRNNLEREGDLHQFEIAQLVNLLPKSLDEAKALIPTLN-RLPGPRLQRILDLLEMFR 181
>gi|68061507|ref|XP_672753.1| DNA-directed RNA polymerase II 16 kDa subunit [Plasmodium berghei
strain ANKA]
gi|68069061|ref|XP_676441.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56490075|emb|CAI01817.1| DNA-directed RNA polymerase II 16 kDa subunit, putative [Plasmodium
berghei]
gi|56496141|emb|CAI00460.1| hypothetical protein PB000968.03.0 [Plasmodium berghei]
Length = 133
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 64/119 (53%), Gaps = 8/119 (6%)
Query: 83 DLQFPKEFENAETLLISEVHMLL--QHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKN 140
DL EF+N + L + E+ ++L Q R T N + + + + + Y RF KN
Sbjct: 12 DLNLGPEFQNCKCLNLCELQLILGDQLRLTSKRNEDAQA----LIRSSFDYANRFATIKN 67
Query: 141 RETITSVR-NLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDI 198
R +I +R NL +L+++E+A + NL P+T EA+ IPSL R EE L IL+ +
Sbjct: 68 RSSIVDIRTNLERIGELYEYEIAMLVNLLPKTILEARYFIPSL-IRLNEETLHSILEHL 125
>gi|83314554|ref|XP_730410.1| RNA polymerase Rpb4 [Plasmodium yoelii yoelii 17XNL]
gi|23490125|gb|EAA21975.1| RNA polymerase Rpb4 [Plasmodium yoelii yoelii]
Length = 152
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 8/123 (6%)
Query: 83 DLQFPKEFENAETLLISEVHMLL--QHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKN 140
DL EF+N + L + E+ ++L Q R T N + + + + + Y RF KN
Sbjct: 12 DLNLGPEFQNCKCLNLCELQLILGDQLRLTSKRNEDAQA----LIRSSFDYANRFATIKN 67
Query: 141 RETITSVR-NLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQ 199
R +I +R NL +L+++E+A + NL P+T EA+ IPSL R EE L IL+ +
Sbjct: 68 RSSIVDIRTNLERIGELYEYEIAMLVNLLPKTILEARYFIPSL-IRLNEETLNSILEHLI 126
Query: 200 TKR 202
K+
Sbjct: 127 IKQ 129
>gi|212546661|ref|XP_002153484.1| polymerase (RNA) II (DNA directed) polypeptide D [Talaromyces
marneffei ATCC 18224]
gi|210065004|gb|EEA19099.1| polymerase (RNA) II (DNA directed) polypeptide D [Talaromyces
marneffei ATCC 18224]
Length = 150
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 66/114 (57%), Gaps = 1/114 (0%)
Query: 91 ENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVRNL 150
+N TL +SE +++ + ++ + E KTL Y E F +FK+ E I +V L
Sbjct: 34 QNTHTLSLSEARLVINKVLENKRRSGKKYDEPENLTKTLDYLEVFSRFKDEENIKAVERL 93
Query: 151 L-TQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKRS 203
L + +L FE + + +LC + EEAK+LIPSL+ + + +L+++LD++ R+
Sbjct: 94 LNSHTELEMFERSQLGSLCCDNAEEAKSLIPSLQNKISDIDLQELLDELTKLRN 147
>gi|365981351|ref|XP_003667509.1| hypothetical protein NDAI_0A01080 [Naumovozyma dairenensis CBS 421]
gi|343766275|emb|CCD22266.1| hypothetical protein NDAI_0A01080 [Naumovozyma dairenensis CBS 421]
Length = 255
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 50/80 (62%)
Query: 125 FQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLEC 184
+ TL Y F +F+++ET+++V LL LH FE+A + +L +T +EAK L+PSL
Sbjct: 175 LKNTLEYLTNFSRFRDQETVSAVIQLLKSTGLHPFEIAQLGSLACDTADEAKTLVPSLTS 234
Query: 185 RFEEEELRQILDDIQTKRSL 204
+ ++EL +IL ++ +L
Sbjct: 235 KISDDELERILKELSNLETL 254
>gi|323337039|gb|EGA78295.1| Rpb4p [Saccharomyces cerevisiae Vin13]
Length = 118
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 49/80 (61%)
Query: 125 FQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLEC 184
+ T+ Y F +F+++ET+ +V LL LH FE+A + +L +T +EAK LIPSL
Sbjct: 38 LKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLNN 97
Query: 185 RFEEEELRQILDDIQTKRSL 204
+ ++EL +IL ++ +L
Sbjct: 98 KISDDELERILKELSNLETL 117
>gi|295672311|ref|XP_002796702.1| polymerase II polypeptide D [Paracoccidioides sp. 'lutzii' Pb01]
gi|225683260|gb|EEH21544.1| polymerase II polypeptide D [Paracoccidioides brasiliensis Pb03]
gi|226283682|gb|EEH39248.1| polymerase II polypeptide D [Paracoccidioides sp. 'lutzii' Pb01]
gi|226288266|gb|EEH43778.1| polymerase (RNA) II (DNA directed) polypeptide D [Paracoccidioides
brasiliensis Pb18]
Length = 152
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 64/117 (54%), Gaps = 1/117 (0%)
Query: 89 EFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVR 148
EF+N TL +SE +++ E + E E KT Y E F +FK +E I +V
Sbjct: 34 EFQNVPTLSLSEARLVINKVLDLRRKGEHKFEERETLVKTQDYLELFARFKEKENIEAVE 93
Query: 149 NLLT-QKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKRSL 204
LL+ +L FE + + +LC EEAK+LIPS+ + + EL+++LD++ R+
Sbjct: 94 RLLSAHTELEFFERSQLGSLCCNDAEEAKSLIPSIGNKISDTELQELLDELTKLRNF 150
>gi|255944811|ref|XP_002563173.1| Pc20g06450 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587908|emb|CAP85974.1| Pc20g06450 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 148
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 70/119 (58%), Gaps = 9/119 (7%)
Query: 91 ENAETLLISE----VHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITS 146
++ TL +SE +H +L++++ EE + + KTL Y + F +FK+ E I +
Sbjct: 32 QHTHTLSLSEARLVIHKVLENKRRGGNKYEEPENLT----KTLDYLDVFARFKDEENIKA 87
Query: 147 VRNLL-TQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKRSL 204
V LL + +L FE + + +LC + EEAK+LIPSL+ + + +L+++LD++ R+
Sbjct: 88 VERLLNSHTELEMFERSQLGSLCCDNAEEAKSLIPSLQNKISDGDLQELLDELTKLRNF 146
>gi|323332974|gb|EGA74376.1| Rpb4p [Saccharomyces cerevisiae AWRI796]
Length = 108
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 49/80 (61%)
Query: 125 FQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLEC 184
+ T+ Y F +F+++ET+ +V LL LH FE+A + +L +T +EAK LIPSL
Sbjct: 28 LKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLNN 87
Query: 185 RFEEEELRQILDDIQTKRSL 204
+ ++EL +IL ++ +L
Sbjct: 88 KISDDELERILKELSNLETL 107
>gi|425765673|gb|EKV04342.1| Polymerase (RNA) II (DNA directed) polypeptide D [Penicillium
digitatum PHI26]
gi|425783567|gb|EKV21411.1| Polymerase (RNA) II (DNA directed) polypeptide D [Penicillium
digitatum Pd1]
Length = 148
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 70/119 (58%), Gaps = 9/119 (7%)
Query: 91 ENAETLLISE----VHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITS 146
++ TL +SE +H +L++++ EE + + KTL Y + F +FK+ E I +
Sbjct: 32 QHTHTLSLSEARLVIHKVLENKRRGGNKYEEPENLT----KTLDYLDVFARFKDEENIKA 87
Query: 147 VRNLL-TQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKRSL 204
V LL + +L FE + + +LC + EEAK+LIPSL+ + + +L+++LD++ R+
Sbjct: 88 VERLLNSHTELEMFERSQLGSLCCDNAEEAKSLIPSLQNKISDGDLQELLDELTKLRNF 146
>gi|343426150|emb|CBQ69681.1| related to Rpb4-16 kD subunit of DNA-directed RNA polymerase II
[Sporisorium reilianum SRZ2]
Length = 174
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 74/156 (47%), Gaps = 32/156 (20%)
Query: 76 VVEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEE------EQEFSEVFQKTL 129
+ +EDA + EF++ LLISEV ++ + +A E ++ + VF KT
Sbjct: 16 IEDEDAAIGKLGTEFDDVGCLLISEVELVFSQPDSLGSSATEAGAGGRDEVATAVFSKTK 75
Query: 130 TYTERFRKFKNRETITSVRNLLTQK------------------------KLHKFELAAIA 165
Y F ++K+ TI +R LL + +L +FE+A +A
Sbjct: 76 DYVSEFSRYKDPNTIREIRELLLKHAKLDDRLVDEHGNELPDDDTPDGLQLTQFEMAQLA 135
Query: 166 NLCPETPEEAKALIPSLECRFEE--EELRQILDDIQ 199
NLC +EAKALIP+L R + + L Q LD+I+
Sbjct: 136 NLCITEVDEAKALIPTLATRDDALLDSLLQELDNIR 171
>gi|294945837|ref|XP_002784851.1| DNA-directed RNA polymerase II 16 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
gi|239898093|gb|EER16647.1| DNA-directed RNA polymerase II 16 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
Length = 153
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 68/135 (50%), Gaps = 10/135 (7%)
Query: 79 EDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKF 138
+D+ +L F ++ A+ L I EV LL+ + + ++ +++ + RF K
Sbjct: 5 QDSAELNFDPVWQKAQCLNICEVEQLLRQPYARLVESGRTSAKTQCLEQSYKHALRFSKI 64
Query: 139 KNRETITSVRNLLTQ---------KKLHKFELAAIANLCPETPEEAKALIPSLECRFEEE 189
+ E +T +R L KLH FE+A + +L PE AK+LIPS+ R+ +
Sbjct: 65 TDPEALTELRAALEDWEPPTAAQGGKLHSFEMAQLVSLLPENASVAKSLIPSMS-RYSDN 123
Query: 190 ELRQILDDIQTKRSL 204
+L Q+L DI T +S
Sbjct: 124 DLDQLLADITTYKSF 138
>gi|294899670|ref|XP_002776698.1| DNA-directed RNA polymerase II 16 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
gi|239883872|gb|EER08514.1| DNA-directed RNA polymerase II 16 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
Length = 153
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 68/135 (50%), Gaps = 10/135 (7%)
Query: 79 EDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKF 138
+D+ +L F ++ A+ L I EV LL+ + + ++ +++ + RF K
Sbjct: 5 QDSAELSFDPVWQKAQCLNICEVEQLLRQPYARLVESGRTSAKTQCLEQSYKHALRFSKI 64
Query: 139 KNRETITSVRNLLTQ---------KKLHKFELAAIANLCPETPEEAKALIPSLECRFEEE 189
+ E +T +R L KLH FE+A + +L PE AK+LIPS+ R+ +
Sbjct: 65 TDPEALTELRAALEDWEPPTAAQGGKLHSFEMAQLVSLLPENASVAKSLIPSMS-RYSDN 123
Query: 190 ELRQILDDIQTKRSL 204
+L Q+L DI T +S
Sbjct: 124 DLDQLLADITTYKSF 138
>gi|154284806|ref|XP_001543198.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150406839|gb|EDN02380.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 152
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 64/117 (54%), Gaps = 1/117 (0%)
Query: 89 EFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVR 148
EF+N TL +SE +++ + + E E KT Y E F +FK +E I +V
Sbjct: 34 EFQNVPTLSLSEARLVINKVLDLRRKGDHKFEEREALVKTQDYLELFARFKEKENIEAVE 93
Query: 149 NLLT-QKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKRSL 204
LL+ +L FE + + +LC EEAK+LIPS+ + + EL+++LD++ R+
Sbjct: 94 RLLSAHTELEFFERSQLGSLCCNDAEEAKSLIPSIGNKISDTELQELLDELTKLRNF 150
>gi|259486116|tpe|CBF83701.1| TPA: polymerase (RNA) II (DNA directed) polypeptide D
(AFU_orthologue; AFUA_3G08040) [Aspergillus nidulans
FGSC A4]
Length = 149
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 91 ENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVRNL 150
+N TL +SE +++ ++ E E KTL Y F +FK+ E I +V L
Sbjct: 33 QNTHTLSLSEARLVIDKVLENKRRGGKKYEEPENLIKTLEYLSLFARFKDEENIKAVERL 92
Query: 151 L-TQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKRS 203
L + +L FE + + +LC + +EAK+LIPSL+ + + EL+++LD++ R+
Sbjct: 93 LNSHTELEMFERSQLGSLCCDNADEAKSLIPSLQNKISDGELQELLDELTKLRN 146
>gi|240273524|gb|EER37044.1| polymerase II polypeptide D [Ajellomyces capsulatus H143]
gi|325087428|gb|EGC40738.1| polymerase II polypeptide D [Ajellomyces capsulatus H88]
Length = 152
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 64/117 (54%), Gaps = 1/117 (0%)
Query: 89 EFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVR 148
EF+N TL +SE +++ + + E E KT Y E F +FK +E I +V
Sbjct: 34 EFQNVPTLSLSEARLVINKVLDLRRKGDHKFEERETLVKTQDYLELFARFKEKENIEAVE 93
Query: 149 NLLT-QKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKRSL 204
LL+ +L FE + + +LC EEAK+LIPS+ + + EL+++LD++ R+
Sbjct: 94 RLLSAHTELEFFERSQLGSLCCNDAEEAKSLIPSIGNKISDTELQELLDELTKLRNF 150
>gi|225556416|gb|EEH04704.1| polymerase II polypeptide D [Ajellomyces capsulatus G186AR]
Length = 152
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 64/117 (54%), Gaps = 1/117 (0%)
Query: 89 EFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVR 148
EF+N TL +SE +++ + + E E KT Y E F +FK +E I +V
Sbjct: 34 EFQNVPTLSLSEARLVINKVLDLRRKGDHKFEERETLVKTQDYLELFARFKEKENIEAVE 93
Query: 149 NLLT-QKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKRSL 204
LL+ +L FE + + +LC EEAK+LIPS+ + + EL+++LD++ R+
Sbjct: 94 RLLSAHTELEFFERSQLGSLCCNDAEEAKSLIPSIGNKISDTELQELLDELTKLRNF 150
>gi|261203243|ref|XP_002628835.1| polymerase II polypeptide D [Ajellomyces dermatitidis SLH14081]
gi|239586620|gb|EEQ69263.1| polymerase II polypeptide D [Ajellomyces dermatitidis SLH14081]
gi|239608342|gb|EEQ85329.1| polymerase II polypeptide D [Ajellomyces dermatitidis ER-3]
gi|327349543|gb|EGE78400.1| RNA polymerase Rpb4 family protein [Ajellomyces dermatitidis ATCC
18188]
Length = 152
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 64/117 (54%), Gaps = 1/117 (0%)
Query: 89 EFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVR 148
EF+N TL +SE +++ + + E E KT Y E F +FK +E I +V
Sbjct: 34 EFQNVPTLSLSEARLVINKVLDLRRKGDHKFEERETLVKTQDYLELFARFKEKENIEAVE 93
Query: 149 NLLT-QKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKRSL 204
LL+ +L FE + + +LC EEAK+LIPS+ + + EL+++LD++ R+
Sbjct: 94 RLLSAHTELEFFERSQLGSLCCNDAEEAKSLIPSIGNKISDTELQELLDELTKLRNF 150
>gi|61679565|pdb|1Y14|A Chain A, Crystal Structure Of Yeast Subcomplex Of Rpb4 And Rpb7
gi|61679567|pdb|1Y14|C Chain C, Crystal Structure Of Yeast Subcomplex Of Rpb4 And Rpb7
Length = 187
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 49/80 (61%)
Query: 125 FQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLEC 184
+ T+ Y F +F+++ET+ +V LL LH FE+A + +L +T +EAK LIPSL
Sbjct: 107 LKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLNN 166
Query: 185 RFEEEELRQILDDIQTKRSL 204
+ ++EL +IL ++ +L
Sbjct: 167 KISDDELERILKELSNLETL 186
>gi|453089606|gb|EMF17646.1| RNA_pol_Rpb4-domain-containing protein [Mycosphaerella populorum
SO2202]
Length = 148
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 63/114 (55%), Gaps = 15/114 (13%)
Query: 99 SEVHMLLQHRKTQNENAEEEQEF---SEVFQKTLTYTERFRKFKNRETITSVRNL---LT 152
+EV M+L E E +F +E++ KT Y + F +FK+ +T V + LT
Sbjct: 41 AEVTMML-------ERIAEVADFRNTTEIYYKTKEYCKTFSRFKDANAVTQVNQISSGLT 93
Query: 153 QKK--LHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKRSL 204
+ + +FE A IA LC ++ EEA+ LIPSLE + ++EL+ +LD+I R
Sbjct: 94 ARGYGIVEFERAQIATLCCDSAEEARTLIPSLEGKISDDELQAVLDEISKLRDF 147
>gi|366991007|ref|XP_003675271.1| hypothetical protein NCAS_0B08160 [Naumovozyma castellii CBS 4309]
gi|342301135|emb|CCC68900.1| hypothetical protein NCAS_0B08160 [Naumovozyma castellii CBS 4309]
Length = 246
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 125 FQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLEC 184
+ TL Y F +F+++ET+ +V LL LH FE+A + +L +T +EAK L+PSL
Sbjct: 166 LKNTLEYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLVPSLNN 225
Query: 185 RFEEEELRQILDDI 198
+ ++EL +IL ++
Sbjct: 226 KISDDELERILKEL 239
>gi|156844386|ref|XP_001645256.1| hypothetical protein Kpol_1060p55 [Vanderwaltozyma polyspora DSM
70294]
gi|156115915|gb|EDO17398.1| hypothetical protein Kpol_1060p55 [Vanderwaltozyma polyspora DSM
70294]
Length = 221
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 125 FQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLEC 184
+ T+ Y F +F+++ET+ +V LL LH FE+A + +L +T +EAK LIPSL
Sbjct: 141 LKNTMEYLTNFSRFRDQETVGAVIQLLKSTGLHPFEIAQLGSLACDTADEAKTLIPSLNN 200
Query: 185 RFEEEELRQILDDI 198
+ ++EL +IL ++
Sbjct: 201 KISDDELERILKEL 214
>gi|410080694|ref|XP_003957927.1| hypothetical protein KAFR_0F01950 [Kazachstania africana CBS 2517]
gi|372464514|emb|CCF58792.1| hypothetical protein KAFR_0F01950 [Kazachstania africana CBS 2517]
Length = 199
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 49/80 (61%)
Query: 125 FQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLEC 184
+ T+ Y F +F+++ET+ +V LL LH FE+A + +L +T +EAK LIPSL
Sbjct: 119 LKNTMEYLTNFSRFRDQETVGAVIQLLKSTGLHPFEIAQLGSLACDTADEAKTLIPSLNN 178
Query: 185 RFEEEELRQILDDIQTKRSL 204
+ ++EL +IL ++ +L
Sbjct: 179 KISDDELERILKELSNLETL 198
>gi|323304432|gb|EGA58203.1| Rpb4p [Saccharomyces cerevisiae FostersB]
gi|323308580|gb|EGA61824.1| Rpb4p [Saccharomyces cerevisiae FostersO]
Length = 108
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 125 FQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLEC 184
+ T Y F +F+++ET+ +V LL LH FE+A + +L +T +EAK LIPSL
Sbjct: 28 LKNTTQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLNN 87
Query: 185 RFEEEELRQILDDIQTKRSL 204
+ ++EL +IL ++ +L
Sbjct: 88 KISDDELERILKELSNLETL 107
>gi|327305417|ref|XP_003237400.1| polymerase II polypeptide D [Trichophyton rubrum CBS 118892]
gi|326460398|gb|EGD85851.1| polymerase II polypeptide D [Trichophyton rubrum CBS 118892]
gi|326472179|gb|EGD96188.1| polymerase II polypeptide D [Trichophyton tonsurans CBS 112818]
gi|326476957|gb|EGE00967.1| polymerase II polypeptide D [Trichophyton equinum CBS 127.97]
Length = 150
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 65/117 (55%), Gaps = 1/117 (0%)
Query: 89 EFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVR 148
EF++ TL +SE +++ E + E E KT Y E F +FK +E I +V
Sbjct: 32 EFQHVPTLSLSEARLVINKVLDLRRKGESKFEERETLVKTQDYLEVFARFKEKENIEAVE 91
Query: 149 NLLT-QKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKRSL 204
LL+ +L FE + + +LC + EEAK+LIPS+ + + +L+++LD++ R+
Sbjct: 92 RLLSAHTELEFFERSQLGSLCCDNAEEAKSLIPSIGNKISDADLQELLDELTKLRNF 148
>gi|241951362|ref|XP_002418403.1| DNA-directed RNA polymerase II subunit, putative [Candida
dubliniensis CD36]
gi|223641742|emb|CAX43703.1| DNA-directed RNA polymerase II subunit, putative [Candida
dubliniensis CD36]
Length = 269
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 53/89 (59%), Gaps = 6/89 (6%)
Query: 122 SEVFQKTLTYTERFRKFKNRETITSVRNLLT------QKKLHKFELAAIANLCPETPEEA 175
+E+ KTL + F +FKNR + +V LL + LH FELA + L E PEEA
Sbjct: 180 NEIVHKTLNFLTNFARFKNRSSCETVEKLLNDFSDHCNESLHPFELAQLGTLECEDPEEA 239
Query: 176 KALIPSLECRFEEEELRQILDDIQTKRSL 204
K+LIPSL+ + + +L+ +L +++ ++L
Sbjct: 240 KSLIPSLQNKVSDVQLQTLLTELRKYQTL 268
>gi|6322321|ref|NP_012395.1| Rpb4p [Saccharomyces cerevisiae S288c]
gi|133336|sp|P20433.1|RPB4_YEAST RecName: Full=DNA-directed RNA polymerase II subunit RPB4;
Short=RNA polymerase II subunit B4; AltName: Full=B32;
AltName: Full=DNA-directed RNA polymerase II 32 kDa
polypeptide
gi|30749740|pdb|1NT9|D Chain D, Complete 12-Subunit Rna Polymerase Ii
gi|61679447|pdb|1Y1W|D Chain D, Complete Rna Polymerase Ii Elongation Complex
gi|61679464|pdb|1Y77|D Chain D, Complete Rna Polymerase Ii Elongation Complex With
Substrate Analogue Gmpcpp
gi|61679505|pdb|1Y1V|D Chain D, Refined Rna Polymerase Ii-tfiis Complex
gi|61679518|pdb|1Y1Y|D Chain D, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
gi|83754246|pdb|2B63|D Chain D, Complete Rna Polymerase Ii-Rna Inhibitor Complex
gi|110590857|pdb|2B8K|D Chain D, 12-Subunit Rna Polymerase Ii
gi|134104677|pdb|2JA5|D Chain D, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
A
gi|134104692|pdb|2JA6|D Chain D, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
B
gi|134104713|pdb|2JA7|D Chain D, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104725|pdb|2JA7|P Chain P, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104737|pdb|2JA8|D Chain D, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
D
gi|160877776|pdb|2R7Z|D Chain D, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
Complex
gi|161172230|pdb|2R92|D Chain D, Elongation Complex Of Rna Polymerase Ii With Artificial
Rdrp Scaffold
gi|161172243|pdb|2R93|D Chain D, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
Delta Virus-Derived Rna Stem Loop
gi|190613465|pdb|2VUM|D Chain D, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
Elongation Complex
gi|224983593|pdb|3FKI|D Chain D, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
gi|240104514|pdb|3H3V|E Chain E, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
Active Site
gi|254839444|pdb|3HOU|D Chain D, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839459|pdb|3HOU|P Chain P, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839474|pdb|3HOV|D Chain D, Complete Rna Polymerase Ii Elongation Complex Ii
gi|254839489|pdb|3HOW|D Chain D, Complete Rna Polymerase Ii Elongation Complex Iii With A
T-U Mismatch And A Frayed Rna 3'-Uridine
gi|254839504|pdb|3HOX|D Chain D, Complete Rna Polymerase Ii Elongation Complex V
gi|254839519|pdb|3HOY|D Chain D, Complete Rna Polymerase Ii Elongation Complex Vi
gi|254839534|pdb|3HOZ|D Chain D, Complete Rna Polymerase Ii Elongation Complex Iv With A
T-U Mismatch And A Frayed Rna 3'-Guanine
gi|257471949|pdb|3I4M|D Chain D, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex D
gi|257471964|pdb|3I4N|D Chain D, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex E
gi|266618768|pdb|3K1F|D Chain D, Crystal Structure Of Rna Polymerase Ii In Complex With
Tfiib
gi|325053966|pdb|3PO2|D Chain D, Arrested Rna Polymerase Ii Elongation Complex
gi|325053981|pdb|3PO3|D Chain D, Arrested Rna Polymerase Ii Reactivation Intermediate
gi|353251636|pdb|3J0K|D Chain D, Orientation Of Rna Polymerase Ii Within The Human
Vp16-Mediator-Pol Ii-Tfiif Assembly
gi|357380839|pdb|4A3C|D Chain D, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid
gi|359546293|pdb|4A3B|D Chain D, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid
gi|359546311|pdb|4A3D|D Chain D, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid
gi|359546328|pdb|4A3E|D Chain D, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546345|pdb|4A3F|D Chain D, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546362|pdb|4A3J|D Chain D, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid And Soaked With Gmpcpp
gi|359546379|pdb|4A3K|D Chain D, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid
gi|359546395|pdb|4A3L|D Chain D, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546412|pdb|4A3M|D Chain D, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|374977882|pdb|4A3G|D Chain D, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid
gi|374977897|pdb|4A3I|D Chain D, Rna Polymerase Ii Binary Complex With Dna
gi|380764982|pdb|4A93|D Chain D, Rna Polymerase Ii Elongation Complex Containing A Cpd
Lesion
gi|414145449|pdb|4BBR|D Chain D, Structure Of Rna Polymerase Ii-tfiib Complex
gi|414145462|pdb|4BBS|D Chain D, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
gi|4834|emb|CAA41112.1| RPB4 [Saccharomyces cerevisiae]
gi|295648|gb|AAA34996.1| RNA polymerase II subunit RPB4 [Saccharomyces cerevisiae]
gi|854557|emb|CAA60815.1| RNA polymerase II subunit 4 [Saccharomyces cerevisiae]
gi|1015548|emb|CAA89435.1| RPB4 [Saccharomyces cerevisiae]
gi|45269603|gb|AAS56182.1| YJL140W [Saccharomyces cerevisiae]
gi|151944986|gb|EDN63241.1| RNA polymerase B [Saccharomyces cerevisiae YJM789]
gi|190409366|gb|EDV12631.1| RNA polymerase II fourth largest subunit [Saccharomyces cerevisiae
RM11-1a]
gi|256272141|gb|EEU07141.1| Rpb4p [Saccharomyces cerevisiae JAY291]
gi|285812762|tpg|DAA08660.1| TPA: Rpb4p [Saccharomyces cerevisiae S288c]
gi|290771093|emb|CBK33718.1| Rpb4p [Saccharomyces cerevisiae EC1118]
gi|323348033|gb|EGA82291.1| Rpb4p [Saccharomyces cerevisiae Lalvin QA23]
gi|323354389|gb|EGA86228.1| Rpb4p [Saccharomyces cerevisiae VL3]
gi|349579060|dbj|GAA24223.1| K7_Rpb4p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365764917|gb|EHN06435.1| Rpb4p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392298625|gb|EIW09722.1| Rpb4p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 221
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 49/80 (61%)
Query: 125 FQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLEC 184
+ T+ Y F +F+++ET+ +V LL LH FE+A + +L +T +EAK LIPSL
Sbjct: 141 LKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLNN 200
Query: 185 RFEEEELRQILDDIQTKRSL 204
+ ++EL +IL ++ +L
Sbjct: 201 KISDDELERILKELSNLETL 220
>gi|401407921|ref|XP_003883409.1| putative DNA-directed RNA polymerase II [Neospora caninum
Liverpool]
gi|325117826|emb|CBZ53377.1| putative DNA-directed RNA polymerase II [Neospora caninum
Liverpool]
Length = 130
Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 70/126 (55%), Gaps = 8/126 (6%)
Query: 80 DAGDLQFPKEFENAETLLISEVHMLL--QHRKTQNENAEEEQEFSEVFQKTLTYTERFRK 137
D+ + EF +A+ L + E+ ++L Q R +AE + + + + Y+ RF K
Sbjct: 6 DSHFMGLGPEFRSAKCLNLCELQLILSDQLRLPNTRSAEAQG----LLKASYDYSTRFAK 61
Query: 138 FKNRETITSVRNLLTQK-KLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
R I +RN L ++ LH+FE+A + NL P++ +EAKALIP+L R L++ILD
Sbjct: 62 LLTRNIIVDLRNNLEREGDLHQFEIAQLVNLLPKSLDEAKALIPTLN-RLPAPRLQRILD 120
Query: 197 DIQTKR 202
++ R
Sbjct: 121 LLEMFR 126
>gi|326634541|pdb|3QT1|D Chain D, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
Length = 219
Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 49/80 (61%)
Query: 125 FQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLEC 184
+ T+ Y F +F+++ET+ +V LL LH FE+A + +L +T +EAK LIPSL
Sbjct: 139 LKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLNN 198
Query: 185 RFEEEELRQILDDIQTKRSL 204
+ ++EL +IL ++ +L
Sbjct: 199 KISDDELERILKELSNLETL 218
>gi|34810556|pdb|1PQV|D Chain D, Rna Polymerase Ii-Tfiis Complex
Length = 221
Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 125 FQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLEC 184
+ T+ Y F +F+++ET+ +V LL LH FE+A + +L +T +EAK LIPSL
Sbjct: 141 LKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLNN 200
Query: 185 RFEEEELRQILDDI 198
+ ++EL +IL ++
Sbjct: 201 KISDDELERILKEL 214
>gi|46403032|gb|AAS92528.1| hypothetical protein [Cryptococcus gattii]
Length = 147
Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 74/137 (54%), Gaps = 12/137 (8%)
Query: 71 HVLDQVVEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLT 130
H Q+ EEDA LQF +F E L ++EV LL+ + Q N + ++V+Q T
Sbjct: 8 HRRQQIQEEDATKLQF-GDFAEGEALTLTEVATLLKAAR-QAPNVPPAPD-NKVYQSTTD 64
Query: 131 YTERFRKFKNRETITSVRNLLTQKK--LHKFELAAIANLCPETPEEAKALIPSLECRF-- 186
Y F + S+R L+ + L+KFE+A I +L PE E A ALIPSLE R+
Sbjct: 65 YVNEFSN-TTMDVSDSMRTALSARHGFLNKFEIAQIMSLRPERVEVAVALIPSLE-RYAQ 122
Query: 187 ---EEEELRQILDDIQT 200
E +L+ +LDD+++
Sbjct: 123 GDENEAQLQSLLDDVRS 139
>gi|254581154|ref|XP_002496562.1| ZYRO0D02992p [Zygosaccharomyces rouxii]
gi|238939454|emb|CAR27629.1| ZYRO0D02992p [Zygosaccharomyces rouxii]
Length = 207
Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 48/74 (64%)
Query: 125 FQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLEC 184
+ T+ Y F +F+++ET+++V LL LH FE+A + +L +T +EAK LIPSL
Sbjct: 127 LKNTMEYLTNFSRFRDQETVSAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLNN 186
Query: 185 RFEEEELRQILDDI 198
+ +++L +IL ++
Sbjct: 187 KISDDDLERILKEL 200
>gi|401841500|gb|EJT43882.1| RPB4-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 221
Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 49/80 (61%)
Query: 125 FQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLEC 184
+ T+ Y F +F+++ET+ +V LL LH FE+A + +L +T +EAK LIPSL
Sbjct: 141 LKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLNN 200
Query: 185 RFEEEELRQILDDIQTKRSL 204
+ ++EL +IL ++ +L
Sbjct: 201 KISDDELERILKELSNLETL 220
>gi|238882243|gb|EEQ45881.1| hypothetical protein CAWG_04219 [Candida albicans WO-1]
Length = 269
Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 53/89 (59%), Gaps = 6/89 (6%)
Query: 122 SEVFQKTLTYTERFRKFKNRETITSVRNLLT------QKKLHKFELAAIANLCPETPEEA 175
+E+ KTL + F +FKNR + +V LL + LH FELA + L E PEEA
Sbjct: 180 NEIVHKTLNFLTNFARFKNRSSCETVEKLLNDFSEHCNEPLHPFELAQLGTLECEDPEEA 239
Query: 176 KALIPSLECRFEEEELRQILDDIQTKRSL 204
K+LIPSL+ + + +L+ +L +++ ++L
Sbjct: 240 KSLIPSLQNKVSDVQLQTLLTELRKYQTL 268
>gi|407280318|pdb|1WCM|D Chain D, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
Length = 177
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 125 FQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLEC 184
+ T+ Y F +F+++ET+ +V LL LH FE+A + +L +T +EAK LIPSL
Sbjct: 97 LKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLNN 156
Query: 185 RFEEEELRQILDDI 198
+ ++EL +IL ++
Sbjct: 157 KISDDELERILKEL 170
>gi|365760048|gb|EHN01796.1| Rpb4p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 221
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 125 FQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLEC 184
+ T+ Y F +F+++ET+ +V LL LH FE+A + +L +T +EAK LIPSL
Sbjct: 141 LKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLNN 200
Query: 185 RFEEEELRQILDDI 198
+ ++EL +IL ++
Sbjct: 201 KISDDELERILKEL 214
>gi|444316670|ref|XP_004178992.1| hypothetical protein TBLA_0B06500 [Tetrapisispora blattae CBS 6284]
gi|387512032|emb|CCH59473.1| hypothetical protein TBLA_0B06500 [Tetrapisispora blattae CBS 6284]
Length = 208
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 50/80 (62%)
Query: 125 FQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLEC 184
+ T+ Y F +F+++ET+ +V LL +LH FE+A + +L ++ +EAK LIPSL
Sbjct: 128 LKNTMEYLTNFSRFRDQETVGAVIQLLKSTELHPFEIAQLGSLACDSADEAKTLIPSLNN 187
Query: 185 RFEEEELRQILDDIQTKRSL 204
+ ++EL +IL ++ +L
Sbjct: 188 KISDDELERILKELSNLETL 207
>gi|366999342|ref|XP_003684407.1| hypothetical protein TPHA_0B03010 [Tetrapisispora phaffii CBS 4417]
gi|357522703|emb|CCE61973.1| hypothetical protein TPHA_0B03010 [Tetrapisispora phaffii CBS 4417]
Length = 202
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 49/80 (61%)
Query: 125 FQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLEC 184
+ ++ Y F +F+++ET+ +V LL LH FE+A + +L +T +EAK LIPSL
Sbjct: 122 LKNSMGYLTNFSRFRDQETVGAVIQLLRSTGLHPFEVAQLGSLACDTADEAKTLIPSLNN 181
Query: 185 RFEEEELRQILDDIQTKRSL 204
+ ++EL +IL ++ +L
Sbjct: 182 KISDDELERILKELSNLETL 201
>gi|367017324|ref|XP_003683160.1| hypothetical protein TDEL_0H00900 [Torulaspora delbrueckii]
gi|359750824|emb|CCE93949.1| hypothetical protein TDEL_0H00900 [Torulaspora delbrueckii]
Length = 236
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 48/74 (64%)
Query: 125 FQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLEC 184
+ T+ Y F +F+++ET+++V LL LH FE+A + +L +T +EAK LIPSL
Sbjct: 156 LKNTMEYLTNFSRFRDQETVSAVIQLLKSVGLHPFEVAQLGSLACDTADEAKTLIPSLNN 215
Query: 185 RFEEEELRQILDDI 198
+ +++L +IL ++
Sbjct: 216 KISDDDLERILKEL 229
>gi|296805818|ref|XP_002843733.1| polymerase II polypeptide D [Arthroderma otae CBS 113480]
gi|238845035|gb|EEQ34697.1| polymerase II polypeptide D [Arthroderma otae CBS 113480]
Length = 150
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 65/117 (55%), Gaps = 1/117 (0%)
Query: 89 EFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVR 148
EF++ TL +SE +++ + + E E KT Y E F +FK +E I +V
Sbjct: 32 EFQHVPTLSLSEARLVINKVLDLRRKGDNKFEERETLVKTQDYLEVFARFKEKENIEAVE 91
Query: 149 NLLT-QKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKRSL 204
LL+ +L FE + + +LC + EEAK+LIPS+ + + +L+++LD++ R+
Sbjct: 92 RLLSAHTELEFFERSQLGSLCCDNAEEAKSLIPSIGNKISDADLQELLDELTKLRNF 148
>gi|242822702|ref|XP_002487941.1| polymerase (RNA) II (DNA directed) polypeptide D [Talaromyces
stipitatus ATCC 10500]
gi|218712862|gb|EED12287.1| polymerase (RNA) II (DNA directed) polypeptide D [Talaromyces
stipitatus ATCC 10500]
Length = 178
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Query: 127 KTLTYTERFRKFKNRETITSVRNLL-TQKKLHKFELAAIANLCPETPEEAKALIPSLECR 185
KTL Y E F +FK+ E I +V LL + +L FE + + +LC + EEAK+LIPSL+ +
Sbjct: 98 KTLDYLEVFARFKDEENIKAVERLLNSHTELEMFERSQLGSLCCDNAEEAKSLIPSLQNK 157
Query: 186 FEEEELRQILDDIQTKRSL 204
+ +L+++LD++ R+
Sbjct: 158 ISDVDLQELLDELTKLRNF 176
>gi|315046530|ref|XP_003172640.1| polymerase II polypeptide D [Arthroderma gypseum CBS 118893]
gi|311343026|gb|EFR02229.1| polymerase II polypeptide D [Arthroderma gypseum CBS 118893]
Length = 150
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 65/117 (55%), Gaps = 1/117 (0%)
Query: 89 EFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVR 148
EF++ TL +SE +++ + + E E KT Y E F +FK +E I +V
Sbjct: 32 EFQHVPTLSLSEARLVINKVLDLRRKGDSKFEERETLVKTQDYLEVFARFKEKENIEAVE 91
Query: 149 NLLT-QKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKRSL 204
LL+ +L FE + + +LC + EEAK+LIPS+ + + +L+++LD++ R+
Sbjct: 92 RLLSAHTELEFFERSQLGSLCCDNAEEAKSLIPSIGNKISDADLQELLDELTKLRNF 148
>gi|407929444|gb|EKG22274.1| hypothetical protein MPH_00453 [Macrophomina phaseolina MS6]
Length = 80
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 130 TYTERFRKFKNRETITSVRNLL-TQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEE 188
Y + F +FK+RE S+ NLL T+ L FE + + LC ET +EAK LIPSL+ + +
Sbjct: 3 AYLDVFSRFKDREDCDSIDNLLRTRNDLAGFERSQLGTLCCETADEAKTLIPSLQDKISD 62
Query: 189 EELRQILDDIQTKR 202
+L+Q+L +I R
Sbjct: 63 ADLQQLLTEISRLR 76
>gi|397638640|gb|EJK73155.1| hypothetical protein THAOC_05240 [Thalassiosira oceanica]
gi|397639376|gb|EJK73539.1| hypothetical protein THAOC_04830 [Thalassiosira oceanica]
Length = 161
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 77/144 (53%), Gaps = 25/144 (17%)
Query: 79 EDAGDLQFPKEFENAETLLIS--EVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFR 136
E+ +L+F EF+ + ++S +V ++LQ QN +E E +V+ KT YT RF
Sbjct: 11 ENLAELEFGSEFDETDIQILSNSQVAVILQ-MSAQNALVRDE-ELHDVYTKTQKYTARFN 68
Query: 137 KFKNRET--------ITSVRNLLT----------QKKLHKFELAAIANLCPETP--EEAK 176
KN E + +++N+L + KLH+FE+AA+ NL EEA
Sbjct: 69 TMKNPEKEHQELVDELDNLQNVLDTFRKEKEDGEEVKLHQFEVAALMNLVATDTMVEEAL 128
Query: 177 ALIPSLECRFEEEELRQILDDIQT 200
AL+PSL +F E E+ +ILD I++
Sbjct: 129 ALVPSL-SKFRESEIDEILDLIRS 151
>gi|70950532|ref|XP_744582.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56524593|emb|CAH80182.1| hypothetical protein PC000766.03.0 [Plasmodium chabaudi chabaudi]
Length = 116
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 62/113 (54%), Gaps = 8/113 (7%)
Query: 89 EFENAETLLISEVHMLL--QHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITS 146
EF+N + L + E+ ++L Q R T N + + + + + Y RF KNR +I
Sbjct: 1 EFQNCKCLNLCELQLILGDQLRLTSKRNEDAQA----LIRSSFDYANRFATIKNRSSIVD 56
Query: 147 VR-NLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDI 198
+R NL +L+++E+A + NL P+T EA+ IPSL R EE L IL+ +
Sbjct: 57 IRTNLERIGELYEYEIAMLVNLLPKTILEARYFIPSL-IRLNEETLNSILEHL 108
>gi|68491177|ref|XP_710596.1| RNA polymerase II fourth largest subunit fragment [Candida albicans
SC5314]
gi|68491206|ref|XP_710583.1| RNA polymerase II fourth largest subunit fragment [Candida albicans
SC5314]
gi|46431805|gb|EAK91331.1| RNA polymerase II fourth largest subunit fragment [Candida albicans
SC5314]
gi|46431819|gb|EAK91344.1| RNA polymerase II fourth largest subunit fragment [Candida albicans
SC5314]
Length = 137
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 53/89 (59%), Gaps = 6/89 (6%)
Query: 122 SEVFQKTLTYTERFRKFKNRETITSVRNLLT------QKKLHKFELAAIANLCPETPEEA 175
+E+ KTL + F +FKNR + +V LL + LH FELA + L E PEEA
Sbjct: 48 NEIVHKTLNFLTNFARFKNRSSCETVEKLLNDFSEHCNEPLHPFELAQLGTLECEDPEEA 107
Query: 176 KALIPSLECRFEEEELRQILDDIQTKRSL 204
K+LIPSL+ + + +L+ +L +++ ++L
Sbjct: 108 KSLIPSLQNKVSDVQLQTLLTELRKYQTL 136
>gi|401625213|gb|EJS43234.1| rpb4p [Saccharomyces arboricola H-6]
Length = 221
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 47/74 (63%)
Query: 125 FQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLEC 184
+ T+ Y F +F+++ET+ +V LL LH FE+A + +L +T +EAK LIPSL
Sbjct: 141 LKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLNN 200
Query: 185 RFEEEELRQILDDI 198
+ +++L +IL ++
Sbjct: 201 KISDDDLERILKEL 214
>gi|320582656|gb|EFW96873.1| RNA polymerase II subunit B32 [Ogataea parapolymorpha DL-1]
Length = 189
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 122 SEVFQKTLTYTERFRKFKNRETITSVRNLLTQKK---LHKFELAAIANLCPETPEEAKAL 178
+EV +KTL Y F +FK+ ET T+V LL + LH FE A + +L E +EA L
Sbjct: 102 NEVLRKTLDYLSTFARFKDAETCTAVEALLKSSENSVLHPFEAAQLGSLACEDIDEAVTL 161
Query: 179 IPSLECRFEEEELRQILDDI 198
IPSL + +E +L++ILD++
Sbjct: 162 IPSLNEKKDEVDLQRILDEL 181
>gi|392512812|emb|CAD26382.2| DNA-DIRECTED RNA POLYMERASE II 16KDA POLYPEPTIDE [Encephalitozoon
cuniculi GB-M1]
Length = 120
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 67/115 (58%), Gaps = 2/115 (1%)
Query: 85 QFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETI 144
Q+ ++ +++ ++++E LL+ +K + A+ S+VF+ TL Y + F + K++
Sbjct: 5 QYGEDMKDSHPIMLAEARYLLEGQK-ERFRADFRSNASKVFRSTLGYLDDFCRIKDKSVA 63
Query: 145 TSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQ 199
+R L+ + E+A +L P++ EEAK+L+PSL R +++ + Q ++ IQ
Sbjct: 64 EDLRTTLSGLGFGEVEIALFGSLFPQSVEEAKSLVPSLGTR-DDDAINQAVEKIQ 117
>gi|302845327|ref|XP_002954202.1| hypothetical protein VOLCADRAFT_106291 [Volvox carteri f.
nagariensis]
gi|300260407|gb|EFJ44626.1| hypothetical protein VOLCADRAFT_106291 [Volvox carteri f.
nagariensis]
Length = 140
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 61/125 (48%), Gaps = 10/125 (8%)
Query: 88 KEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSV 147
K FE+A + SEV +L Q + + + QKTL Y ++F N E + ++
Sbjct: 14 KVFEHAAVISNSEVATILSEYMRQRREEKPSFQPQPLVQKTLEYVQKFNCGTNPEAVQAM 73
Query: 148 RNLLTQKKLHKFELAAIANLCPETPEEAKALIPSL---------ECR-FEEEELRQILDD 197
RN + L FE IANL PE +EA LIPSL E R F EEL ++L +
Sbjct: 74 RNYMENFGLKPFEWGLIANLMPEDTDEANKLIPSLVDNPDDPPEEHRGFLPEELDRMLAE 133
Query: 198 IQTKR 202
+Q R
Sbjct: 134 LQNLR 138
>gi|50290017|ref|XP_447440.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526750|emb|CAG60377.1| unnamed protein product [Candida glabrata]
Length = 215
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 48/80 (60%)
Query: 125 FQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLEC 184
+ ++ Y F +F+++ET+ +V LL LH FE+A + L +T +EAK LIPSL
Sbjct: 135 LKNSMEYLTNFSRFRDQETVAAVLQLLKSTGLHPFEVAQLGTLACDTADEAKTLIPSLTN 194
Query: 185 RFEEEELRQILDDIQTKRSL 204
+ +++L +IL ++ +L
Sbjct: 195 KISDDDLERILKELSNLETL 214
>gi|219121231|ref|XP_002185843.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|209582692|gb|ACI65313.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 162
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 71/142 (50%), Gaps = 23/142 (16%)
Query: 79 EDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKF 138
E+ +LQF EFE+ L ++V ++LQ + N ++E +EV++KT Y RF
Sbjct: 17 ENVAELQFGPEFEDIHILSNAQVAVILQ--VSANSAVNRDEELNEVYRKTQKYVNRFNTM 74
Query: 139 KN-----RETITSVRNLL-------------TQKKLHKFELAAIANLCPETP--EEAKAL 178
N +E + + NL + +LH E+AA+ NL EEA AL
Sbjct: 75 TNPEKEHQELVDELDNLQDALSTFRKETDDGDELELHGAEVAALMNLVATDTLVEEAVAL 134
Query: 179 IPSLECRFEEEELRQILDDIQT 200
IPSL RF E + +ILD I++
Sbjct: 135 IPSL-SRFPEAAIDEILDLIRS 155
>gi|448516912|ref|XP_003867666.1| Rpb4 protein [Candida orthopsilosis Co 90-125]
gi|380352005|emb|CCG22229.1| Rpb4 protein [Candida orthopsilosis]
Length = 208
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 53/89 (59%), Gaps = 6/89 (6%)
Query: 122 SEVFQKTLTYTERFRKFKNRETITSVRNLLT------QKKLHKFELAAIANLCPETPEEA 175
+EV KTL Y F +FKNR + +V LL ++ LH FE+A + L E EEA
Sbjct: 119 NEVIHKTLNYLTNFARFKNRSSCETVEKLLNDFNEHCKEYLHPFEIAQLGTLECEDAEEA 178
Query: 176 KALIPSLECRFEEEELRQILDDIQTKRSL 204
K+LIPSL+ + + +L+ +L +++ ++L
Sbjct: 179 KSLIPSLQNKVSDVQLQSLLTELRKYQTL 207
>gi|354543642|emb|CCE40363.1| hypothetical protein CPAR2_104010 [Candida parapsilosis]
Length = 208
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 53/89 (59%), Gaps = 6/89 (6%)
Query: 122 SEVFQKTLTYTERFRKFKNRETITSVRNLLT------QKKLHKFELAAIANLCPETPEEA 175
+EV KTL Y F +FKNR + +V LL ++ LH FE+A + L E EEA
Sbjct: 119 NEVIHKTLNYLTNFARFKNRSSCETVEKLLNDFNEHCKEYLHPFEIAQLGTLECEDAEEA 178
Query: 176 KALIPSLECRFEEEELRQILDDIQTKRSL 204
K+LIPSL+ + + +L+ +L +++ ++L
Sbjct: 179 KSLIPSLQNKVSDVQLQSLLTELRKYQTL 207
>gi|452987725|gb|EME87480.1| hypothetical protein MYCFIDRAFT_27879 [Pseudocercospora fijiensis
CIRAD86]
Length = 152
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 54/95 (56%), Gaps = 5/95 (5%)
Query: 113 ENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVRNL---LTQKKLH--KFELAAIANL 167
E A + +EV+ KT Y + F +F++ + IT V + LT + L +FE +A L
Sbjct: 55 EEAAPHKNHTEVYYKTKEYCKTFSRFRDNQAITQVNQITSNLTARGLGIVEFERCQLATL 114
Query: 168 CPETPEEAKALIPSLECRFEEEELRQILDDIQTKR 202
C ++ EEA+ LIPSLE + +EEL L++I R
Sbjct: 115 CCDSVEEARTLIPSLEGKISDEELENTLNEISKLR 149
>gi|255724754|ref|XP_002547306.1| hypothetical protein CTRG_01612 [Candida tropicalis MYA-3404]
gi|240135197|gb|EER34751.1| hypothetical protein CTRG_01612 [Candida tropicalis MYA-3404]
Length = 225
Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 6/89 (6%)
Query: 122 SEVFQKTLTYTERFRKFKNRETITSVRNLLT------QKKLHKFELAAIANLCPETPEEA 175
+EV KTL Y F +FKN ++ +V LL + LH FELA + L E EEA
Sbjct: 136 NEVVHKTLNYLTNFSRFKNTSSVETVEKLLNDFSEHCNEPLHPFELAQLGTLECEDSEEA 195
Query: 176 KALIPSLECRFEEEELRQILDDIQTKRSL 204
K+LIPSL + + +L+ +L +++ ++L
Sbjct: 196 KSLIPSLTNKVSDVQLQTLLTELRKYQTL 224
>gi|71021277|ref|XP_760869.1| hypothetical protein UM04722.1 [Ustilago maydis 521]
gi|46100965|gb|EAK86198.1| hypothetical protein UM04722.1 [Ustilago maydis 521]
Length = 175
Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 33/157 (21%)
Query: 76 VVEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAE------EEQEFSEVFQKTL 129
+ +EDA + EF++ LLISEV ++ A ++ + VF KT
Sbjct: 16 IEDEDAAIGKLGSEFDDIGCLLISEVELVFSQPDQLGSMANPAGAGGRDEVATAVFSKTK 75
Query: 130 TYTERFRKFKNRETITSVRNLLTQK-------------------------KLHKFELAAI 164
Y F ++K+ TI +R LL + +L +FE+A +
Sbjct: 76 DYVSEFSRYKDPNTIREIRELLLKHAKLDDRQIDEDGNELPEDEANAAGLQLTQFEMAQL 135
Query: 165 ANLCPETPEEAKALIPSLECRFEE--EELRQILDDIQ 199
ANLC +EAKALIP+L R + + L Q LD+I+
Sbjct: 136 ANLCITEVDEAKALIPTLATRDDALLDSLLQELDNIR 172
>gi|294658380|ref|XP_460714.2| DEHA2F08140p [Debaryomyces hansenii CBS767]
gi|202953086|emb|CAG89054.2| DEHA2F08140p [Debaryomyces hansenii CBS767]
Length = 191
Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 6/89 (6%)
Query: 122 SEVFQKTLTYTERFRKFKNRETITSVRNLL------TQKKLHKFELAAIANLCPETPEEA 175
+E+ KTL Y F +FKN + +V LL T + LH FELA + L E EEA
Sbjct: 102 NEIMHKTLNYLSNFSRFKNSSSTETVEKLLNDFNFSTSEPLHPFELAQLGTLECEDAEEA 161
Query: 176 KALIPSLECRFEEEELRQILDDIQTKRSL 204
K+LIPSL + + +L+ +L +++ ++L
Sbjct: 162 KSLIPSLTNKVSDVQLQTLLTELRKYQTL 190
>gi|307108038|gb|EFN56279.1| hypothetical protein CHLNCDRAFT_145153 [Chlorella variabilis]
Length = 130
Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 51/94 (54%)
Query: 92 NAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVRNLL 151
+ + L ISEV L+ + + + + + + K Y RF KNR+T+ +R ++
Sbjct: 14 DIKVLTISEVACLIDEYVKGTQQRDADYQPNPMLVKAAEYASRFATNKNRDTLQKIREVI 73
Query: 152 TQKKLHKFELAAIANLCPETPEEAKALIPSLECR 185
+L + EL +ANL ET +EA+ L+P+L+ R
Sbjct: 74 AHNQLSELELGLVANLSIETADEARKLVPTLDDR 107
>gi|134110404|ref|XP_776029.1| hypothetical protein CNBD0780 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258697|gb|EAL21382.1| hypothetical protein CNBD0780 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 152
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 74/141 (52%), Gaps = 15/141 (10%)
Query: 71 HVLDQVVEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLT 130
H Q+ EEDA LQF +F E L ++EV LL+ + Q N + ++V+Q T
Sbjct: 8 HRRQQIQEEDATKLQF-GDFAEGEALTLTEVATLLKAAR-QAPNVPPAPD-NKVYQSTTD 64
Query: 131 YTERFRKF-----KNRETITSVRNLLTQKK-LHKFELAAIANLCPETPEEAKALIPSLEC 184
Y F + T+ ++ L + L+KFE+A I +L PE E A ALIPSLE
Sbjct: 65 YVNEFSNTTMDVSDSMRTLPAISALSARHGFLNKFEIAQIMSLRPERVEVAVALIPSLE- 123
Query: 185 RF-----EEEELRQILDDIQT 200
R+ E +L+ +LDD+++
Sbjct: 124 RYAQGDENEAQLQSLLDDVRS 144
>gi|260945729|ref|XP_002617162.1| hypothetical protein CLUG_02606 [Clavispora lusitaniae ATCC 42720]
gi|238849016|gb|EEQ38480.1| hypothetical protein CLUG_02606 [Clavispora lusitaniae ATCC 42720]
Length = 191
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 6/89 (6%)
Query: 122 SEVFQKTLTYTERFRKFKNRETITSVRNLL------TQKKLHKFELAAIANLCPETPEEA 175
+E+ KTL Y F +FKN + +V LL + LH FE+A + NL E EEA
Sbjct: 102 NEIVHKTLNYLSMFSRFKNSSSTETVEKLLNDFSSQASEPLHPFEIAQLGNLECEDAEEA 161
Query: 176 KALIPSLECRFEEEELRQILDDIQTKRSL 204
K+LIPSL + + +L+ +L +++ ++L
Sbjct: 162 KSLIPSLAHKVSDVQLKTLLTELRKYQTL 190
>gi|392576163|gb|EIW69294.1| hypothetical protein TREMEDRAFT_62158 [Tremella mesenterica DSM
1558]
Length = 156
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 72/132 (54%), Gaps = 14/132 (10%)
Query: 76 VVEEDAGDLQFPKEFENAETLLISEVHMLLQH-RKTQNENAEEEQEFSEVFQKTLTYTER 134
VVEEDA LQF + + E L +++V+ LL+ RK + + ++V++ T+ Y
Sbjct: 22 VVEEDATKLQF-GDLADGEALTLTDVNTLLEAARKAPDVPPPPD---NKVYKSTVEYVST 77
Query: 135 FRKFKNRETITSVRNLLTQKK--LHKFELAAIANLCPETPEEAKALIPSLECRFEEEE-- 190
F + + S+R L+KFE+A I L PE E A ALIPSLE R+ + +
Sbjct: 78 FSN-ATPDAVESMRQAFAAHPGFLNKFEIAQIMYLRPERIEVAIALIPSLE-RYSQGDAK 135
Query: 191 ---LRQILDDIQ 199
L+Q+LDD++
Sbjct: 136 ETLLQQLLDDVR 147
>gi|255088083|ref|XP_002505964.1| predicted protein [Micromonas sp. RCC299]
gi|226521235|gb|ACO67222.1| predicted protein [Micromonas sp. RCC299]
Length = 158
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 63/131 (48%), Gaps = 15/131 (11%)
Query: 75 QVVEEDA------GDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEV--FQ 126
+ VEED GDL +F L + EV ++ + + +EN E ++ FQ
Sbjct: 10 KAVEEDDVTALKFGDLDRGDKFNGC--LSMDEVRIIQESKINDDENDGVETSTTQTRTFQ 67
Query: 127 KTLTYTERFRKFKNRETITSVRNLLTQK-----KLHKFELAAIANLCPETPEEAKALIPS 181
KTL YT RF + E +R L ++ +H+FE AA +NL P+ EA LIPS
Sbjct: 68 KTLEYTRRFSTVRTPEQTQMLRELYDEQTTAATNMHEFERAAFSNLQPQDAHEALTLIPS 127
Query: 182 LECRFEEEELR 192
L + E E R
Sbjct: 128 LGAKNEAGEDR 138
>gi|224009492|ref|XP_002293704.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220970376|gb|EED88713.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 172
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 76/144 (52%), Gaps = 25/144 (17%)
Query: 79 EDAGDLQFPKEF--ENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFR 136
E+A +L F F E+ + L ++V ++LQ QN +E E +V++KT Y ER+
Sbjct: 22 ENAAELSFGGGFATEDIQILSNAQVAVILQ-MSAQNALIRDE-ELHDVYKKTQKYVERYN 79
Query: 137 KFKN-----RETITSVRNL---LT----------QKKLHKFELAAIANLCPETP--EEAK 176
KN +E + + NL LT + +LH+FE+AA+ NL EEA
Sbjct: 80 TMKNPEKEHQELVDELDNLQGALTTFRKETEDGQEMELHQFEVAALMNLVATDTMVEEAV 139
Query: 177 ALIPSLECRFEEEELRQILDDIQT 200
ALIPSL RF E + +ILD I++
Sbjct: 140 ALIPSL-SRFPESAVDEILDLIRS 162
>gi|405119928|gb|AFR94699.1| hypothetical protein CNAG_01444 [Cryptococcus neoformans var.
grubii H99]
Length = 152
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 73/141 (51%), Gaps = 15/141 (10%)
Query: 71 HVLDQVVEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLT 130
H Q+ EEDA LQF +F E L ++EV LL+ + Q N + ++V+Q T
Sbjct: 8 HRRQQIQEEDATKLQF-GDFAEGEALTLTEVATLLKAAR-QAPNVPPAPD-NKVYQSTTD 64
Query: 131 YTERFRKF-----KNRETITSVRNLLTQKK-LHKFELAAIANLCPETPEEAKALIPSLEC 184
Y F + T+ ++ L + L+KFE+A I +L PE E A ALIPSLE
Sbjct: 65 YVNEFSNTTMDVSDSMRTLPAISALSARHGFLNKFEIAQIMSLRPERVEVAVALIPSLE- 123
Query: 185 RF-----EEEELRQILDDIQT 200
R+ E +L+ +LDD++
Sbjct: 124 RYAQGDENEAQLQSLLDDVRA 144
>gi|190345472|gb|EDK37362.2| hypothetical protein PGUG_01460 [Meyerozyma guilliermondii ATCC
6260]
Length = 188
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Query: 120 EFSEVFQKTLTYTERFRKFKNRETITSVRNLLTQ------KKLHKFELAAIANLCPETPE 173
E +EV KTL Y F +F+N + +V LL + LH FE A + NL E E
Sbjct: 97 ESNEVIHKTLNYLSTFSRFQNTSSTETVEKLLNDFSASIAEPLHPFEFAQLGNLEFEDAE 156
Query: 174 EAKALIPSLECRFEEEELRQILDDIQTKRSL 204
EAK+LIPSL + + +L+ +L +++ ++L
Sbjct: 157 EAKSLIPSLANKVSDVQLQTLLSELRKYQTL 187
>gi|429963299|gb|ELA42843.1| hypothetical protein VICG_00158 [Vittaforma corneae ATCC 50505]
Length = 114
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 59/103 (57%), Gaps = 3/103 (2%)
Query: 98 ISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVRNLLTQKKLH 157
ISE + LL KT+ +N E ++ KTL Y E F K +++ + ++ LT+ L+
Sbjct: 12 ISEAYHLLAPLKTRYKNTRAES--YRIYTKTLEYAEMFCKIEDKSALVDLKFFLTELGLN 69
Query: 158 KFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQT 200
+ E+A + L P++ EAK IPSL R E++ + +I++ I +
Sbjct: 70 QEEVAMVITLLPQSVSEAKICIPSLS-RLEDKLISKIIEKINS 111
>gi|146419657|ref|XP_001485789.1| hypothetical protein PGUG_01460 [Meyerozyma guilliermondii ATCC
6260]
Length = 188
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Query: 120 EFSEVFQKTLTYTERFRKFKNRETITSVRNLLTQ------KKLHKFELAAIANLCPETPE 173
E +EV KTL Y F +F+N + +V LL + LH FE A + NL E E
Sbjct: 97 ESNEVIHKTLNYLSTFSRFQNTSSTETVEKLLNDFSALIAEPLHPFEFAQLGNLEFEDAE 156
Query: 174 EAKALIPSLECRFEEEELRQILDDIQTKRSL 204
EAK+LIPSL + + +L+ +L +++ ++L
Sbjct: 157 EAKSLIPSLANKVSDVQLQTLLSELRKYQTL 187
>gi|344230891|gb|EGV62776.1| hypothetical protein CANTEDRAFT_115567 [Candida tenuis ATCC 10573]
gi|344230892|gb|EGV62777.1| hypothetical protein CANTEDRAFT_115567 [Candida tenuis ATCC 10573]
Length = 190
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 6/89 (6%)
Query: 122 SEVFQKTLTYTERFRKFKNRETITSVRNLLTQ------KKLHKFELAAIANLCPETPEEA 175
+E+ QKTL Y F +FKN + +V LL LH FE+A + L + EEA
Sbjct: 101 NEIIQKTLNYLATFGRFKNSSSTETVEKLLADFGSSASDPLHPFEIAQLGTLECDDSEEA 160
Query: 176 KALIPSLECRFEEEELRQILDDIQTKRSL 204
K+LIPSL + + +L+ +L++++ ++L
Sbjct: 161 KSLIPSLTNKVTDTQLQNLLNELRKYQTL 189
>gi|344302775|gb|EGW33049.1| RNA polymerase II fourth largest subunit [Spathaspora passalidarum
NRRL Y-27907]
Length = 203
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 6/89 (6%)
Query: 122 SEVFQKTLTYTERFRKFKNRETITSVRNLLTQ------KKLHKFELAAIANLCPETPEEA 175
+E+ KTL Y F +FKN + +V LL + LH FELA + L E EEA
Sbjct: 114 NEIMHKTLNYLSNFARFKNSSSTETVEKLLNDFSLSAIEPLHPFELAQLGTLECEDAEEA 173
Query: 176 KALIPSLECRFEEEELRQILDDIQTKRSL 204
K+LIPSL + + +L+ +L +++ ++L
Sbjct: 174 KSLIPSLANKVSDVQLQTLLTELRKYQTL 202
>gi|302664532|ref|XP_003023895.1| hypothetical protein TRV_01945 [Trichophyton verrucosum HKI 0517]
gi|291187915|gb|EFE43277.1| hypothetical protein TRV_01945 [Trichophyton verrucosum HKI 0517]
Length = 163
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 71/130 (54%), Gaps = 14/130 (10%)
Query: 89 EFENAETLLISEVHMLLQ---HRKTQNENAEEEQEFSEVFQ----------KTLTYTERF 135
EF++ TL +SE +++ + + E+ EE+E S + KT Y E F
Sbjct: 32 EFQHVPTLSLSEARLVINKVLDLRRKGESKFEEREPSMMLTPISLAGRTLVKTQDYLEVF 91
Query: 136 RKFKNRETITSVRNLLT-QKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQI 194
+FK +E I +V LL+ +L FE + + +LC + EEAK+LIPS+ + + +L+++
Sbjct: 92 ARFKEKENIEAVERLLSAHTELEFFERSQLGSLCCDNAEEAKSLIPSIGNKISDADLQEL 151
Query: 195 LDDIQTKRSL 204
LD++ R+
Sbjct: 152 LDELTKLRNF 161
>gi|448089277|ref|XP_004196760.1| Piso0_003985 [Millerozyma farinosa CBS 7064]
gi|448093518|ref|XP_004197791.1| Piso0_003985 [Millerozyma farinosa CBS 7064]
gi|359378182|emb|CCE84441.1| Piso0_003985 [Millerozyma farinosa CBS 7064]
gi|359379213|emb|CCE83410.1| Piso0_003985 [Millerozyma farinosa CBS 7064]
Length = 192
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
Query: 122 SEVFQKTLTYTERFRKFKNRETITSVRNLLT------QKKLHKFELAAIANLCPETPEEA 175
+E+ KTL Y F +FKN + +V LL LH FELA + L E EEA
Sbjct: 103 NEILHKTLNYLSNFSRFKNSSSTEAVEKLLNDFSSSVSHPLHPFELAQLGTLECEEAEEA 162
Query: 176 KALIPSLECRFEEEELRQILDDIQTKRSL 204
K+LIPSL + + +L+ +L +++ ++L
Sbjct: 163 KSLIPSLANKVSDVQLQTLLTELRKYQTL 191
>gi|396473070|ref|XP_003839260.1| hypothetical protein LEMA_P029330.1 [Leptosphaeria maculans JN3]
gi|312215829|emb|CBX95781.1| hypothetical protein LEMA_P029330.1 [Leptosphaeria maculans JN3]
Length = 389
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 16/134 (11%)
Query: 89 EFENAETLLISEVHMLLQ--HRKTQNENAEEEQEFSEVF--QKTLT----YTERFRKFKN 140
+FE+ L +SE ++ H + ++ E ++ Q+T+T Y E F +FK
Sbjct: 246 DFEDVHALSVSEARAVVTAVHEARKKKDPENNPLRDRIYNDQQTITQFLDYLENFSRFKE 305
Query: 141 RETITSVRNLL-TQKKLHKFELAAIA-------NLCPETPEEAKALIPSLECRFEEEELR 192
E++ S+ L T +L E A +A L PET EEA LIPSL + ++L+
Sbjct: 306 EESLHSIAALFDTHPELSTVEKAMLAQEADKPGTLTPETAEEATYLIPSLATKMHADDLQ 365
Query: 193 QILDDIQTKRSLQY 206
ILD++ R L++
Sbjct: 366 PILDELNKLRMLEH 379
>gi|403214872|emb|CCK69372.1| hypothetical protein KNAG_0C02610 [Kazachstania naganishii CBS
8797]
Length = 218
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 50/82 (60%), Gaps = 2/82 (2%)
Query: 125 FQKTLTYTERFRKFKNRETITSVRNLL--TQKKLHKFELAAIANLCPETPEEAKALIPSL 182
+ T+ Y F +FK+++T+++V L+ LH FE+A + +L +T +EAK LIPSL
Sbjct: 136 LKNTMEYLTNFSRFKDQQTVSAVIQLMKTVDADLHPFEIAQLGSLACDTADEAKTLIPSL 195
Query: 183 ECRFEEEELRQILDDIQTKRSL 204
+ ++ L +IL ++ + S+
Sbjct: 196 NGKISDDVLERILKELSSLASM 217
>gi|302496231|ref|XP_003010118.1| hypothetical protein ARB_03624 [Arthroderma benhamiae CBS 112371]
gi|291173657|gb|EFE29478.1| hypothetical protein ARB_03624 [Arthroderma benhamiae CBS 112371]
Length = 163
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 68/130 (52%), Gaps = 14/130 (10%)
Query: 89 EFENAETLLISEVHMLLQ-----HRKTQNENAEEEQEF--------SEVFQKTLTYTERF 135
EF++ TL +SE +++ RK +++ E E KT Y E F
Sbjct: 32 EFQHVPTLSLSEARLVINKVLDLRRKGESKFEEREPPMMLTPISLAGRTLVKTQDYLEVF 91
Query: 136 RKFKNRETITSVRNLLT-QKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQI 194
+FK +E I +V LL+ +L FE + + +LC + EEAK+LIPS+ + + +L+++
Sbjct: 92 ARFKEKENIEAVERLLSAHTELEFFERSQLGSLCCDNAEEAKSLIPSIGNKISDADLQEL 151
Query: 195 LDDIQTKRSL 204
LD++ R+
Sbjct: 152 LDELTKLRNF 161
>gi|406603825|emb|CCH44684.1| DNA-directed RNA polymerase II subunit [Wickerhamomyces ciferrii]
Length = 200
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Query: 122 SEVFQKTLTYTERFRKFKNRETITSVRNLLT---QKKLHKFELAAIANLCPETPEEAKAL 178
+EV +KTL + F +F++ +T ++V LL LH FELA + +L + +EAK L
Sbjct: 114 NEVLKKTLDHLSTFSRFRDTQTCSAVEQLLKSPENSNLHPFELAQLGSLACDDVDEAKTL 173
Query: 179 IPSLECRFEEEELRQILD 196
IPSL + + EL+ IL+
Sbjct: 174 IPSLTNKKTDAELQNILN 191
>gi|19173403|ref|NP_597206.1| DNA-DIRECTED RNA POLYMERASE II 16KDA POLYPEPTIDE [Encephalitozoon
cuniculi GB-M1]
gi|449328913|gb|AGE95189.1| DNA-directed RNA polymerase II 16kDa polypeptide [Encephalitozoon
cuniculi]
Length = 104
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 59/103 (57%), Gaps = 2/103 (1%)
Query: 97 LISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVRNLLTQKKL 156
+++E LL+ +K + A+ S+VF+ TL Y + F + K++ +R L+
Sbjct: 1 MLAEARYLLEGQK-ERFRADFRSNASKVFRSTLGYLDDFCRIKDKSVAEDLRTTLSGLGF 59
Query: 157 HKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQ 199
+ E+A +L P++ EEAK+L+PSL R +++ + Q ++ IQ
Sbjct: 60 GEVEIALFGSLFPQSVEEAKSLVPSLGTR-DDDAINQAVEKIQ 101
>gi|149245180|ref|XP_001527124.1| hypothetical protein LELG_01953 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146449518|gb|EDK43774.1| hypothetical protein LELG_01953 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 226
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 6/89 (6%)
Query: 122 SEVFQKTLTYTERFRKFKNRETITSVRNLLTQ------KKLHKFELAAIANLCPETPEEA 175
+E+ KTL Y F +FKNR + +V L+ + LH FE+A + L E EEA
Sbjct: 137 NEIMHKTLNYLTNFARFKNRLSCETVEKLVNDFNDHCTEVLHPFEIAQLGTLECEDAEEA 196
Query: 176 KALIPSLECRFEEEELRQILDDIQTKRSL 204
K+LIPSL + + +L+ +L +++ ++L
Sbjct: 197 KSLIPSLNNKVSDVQLQSLLTELRKYQTL 225
>gi|254569986|ref|XP_002492103.1| RNA polymerase II subunit B32 [Komagataella pastoris GS115]
gi|238031900|emb|CAY69823.1| RNA polymerase II subunit B32 [Komagataella pastoris GS115]
gi|328351407|emb|CCA37806.1| DNA-directed RNA polymerase II subunit D [Komagataella pastoris CBS
7435]
Length = 186
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 48/80 (60%), Gaps = 5/80 (6%)
Query: 124 VFQKTLTYTERFRKFKNRETITSVRNLLTQKK----LHKFELAAIANLCPETPEEAKALI 179
V +KTL Y F +FK+ ET T+V LL LH FE+A +++L E +EA LI
Sbjct: 101 VVKKTLDYLNTFARFKDEETCTAVDQLLHNSSDCSVLHPFEIAQLSSLGCEDVDEAITLI 160
Query: 180 PSLECRFEEEELRQILDDIQ 199
PSL + +E L++ILD++
Sbjct: 161 PSLAAK-KEVNLQRILDELN 179
>gi|150865135|ref|XP_001384230.2| RNA polymerase II fourth largest subunit [Scheffersomyces stipitis
CBS 6054]
gi|149386391|gb|ABN66201.2| RNA polymerase II fourth largest subunit [Scheffersomyces stipitis
CBS 6054]
Length = 190
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 6/89 (6%)
Query: 122 SEVFQKTLTYTERFRKFKNRETITSVRNLL------TQKKLHKFELAAIANLCPETPEEA 175
+E+ KTL Y F +FKN + +V LL + LH FELA + L E EEA
Sbjct: 101 NEIMHKTLNYLTNFARFKNSSSTETVEKLLNDFSLSASEPLHPFELAQLGTLECEDAEEA 160
Query: 176 KALIPSLECRFEEEELRQILDDIQTKRSL 204
K+LIPSL + + +L+ +L +++ ++L
Sbjct: 161 KSLIPSLIHKVSDVQLQTLLTELRKYQTL 189
>gi|385302596|gb|EIF46721.1| rpb4p [Dekkera bruxellensis AWRI1499]
Length = 124
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 122 SEVFQKTLTYTERFRKFKNRETITSVRNLL---TQKKLHKFELAAIANLCPETPEEAKAL 178
+EV KTL Y F +FK+ ET T+ LL LH FE+A + +L E +EA L
Sbjct: 37 NEVLSKTLKYLSTFSRFKDAETCTAAEALLKSDDNSALHPFEIAQLGSLACEDTDEAITL 96
Query: 179 IPSLECRFEEEELRQILDDIQ 199
IPSL + + +L +IL+++
Sbjct: 97 IPSLNEKKDSIDLDRILEELN 117
>gi|396081878|gb|AFN83492.1| DNA-directed RNA polymerase II fourth largest subunit
[Encephalitozoon romaleae SJ-2008]
Length = 104
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 57/103 (55%), Gaps = 2/103 (1%)
Query: 97 LISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVRNLLTQKKL 156
++SE LL+ +K + A+ S++F+ TL Y + F + K++ +R +
Sbjct: 1 MLSEARYLLEGQK-ERFRADFRSNASKIFRSTLGYLDEFCRIKDKSVAEDLRTTFSGLGF 59
Query: 157 HKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQ 199
+ E+A + +L P++ EEAK LIPSL + ++ + Q ++ IQ
Sbjct: 60 SELEIALLGSLFPQSVEEAKTLIPSLASK-SDDAIGQAVEKIQ 101
>gi|50548611|ref|XP_501775.1| YALI0C12793p [Yarrowia lipolytica]
gi|49647642|emb|CAG82085.1| YALI0C12793p [Yarrowia lipolytica CLIB122]
Length = 178
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 72/153 (47%), Gaps = 28/153 (18%)
Query: 72 VLDQVVEEDAGDLQFPKEF----------ENAETLL-ISEVHMLLQH--RKTQNENAEEE 118
++ V +EDA L+ EF E A T L SE L+ H +K +N+ E
Sbjct: 17 TVNAVQDEDAAQLKLGPEFDVTQYTHDGFETALTALSTSEARSLINHTLKKRKNDALGIE 76
Query: 119 Q------------EFSEVFQKTLTYTERFRKFKNRETITSVRNLLTQKK---LHKFELAA 163
++V +KT Y F +F+ ++ + +V +L + LH FE+A
Sbjct: 77 NTEDDTLDDEEEINANDVLRKTREYMNIFSRFREQQKVAAVAQILRHQDNADLHPFEIAQ 136
Query: 164 IANLCPETPEEAKALIPSLECRFEEEELRQILD 196
+ L + EEAK LIPSL + + +L+++LD
Sbjct: 137 LGTLSCDGAEEAKTLIPSLAAKRTDAQLQELLD 169
>gi|401827328|ref|XP_003887756.1| RNA polymerase II subunit Rpb4 [Encephalitozoon hellem ATCC 50504]
gi|392998763|gb|AFM98775.1| RNA polymerase II subunit Rpb4 [Encephalitozoon hellem ATCC 50504]
Length = 121
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Query: 88 KEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSV 147
++ +++ + ++E LL+ +K + A+ S++F+ TL Y + F + K++ +
Sbjct: 8 EDMKDSHPVTLAEARYLLEGQK-ERFRADFRSNASKIFRSTLGYLDEFCRIKDKSVAEDL 66
Query: 148 RNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEE 188
R L+ + E+A +L P++ EEAK+L+PSLE + ++
Sbjct: 67 RTTLSALGFSELEIALFGSLFPQSVEEAKSLVPSLESKGDD 107
>gi|71030566|ref|XP_764925.1| DNA-directed RNA polymerase II subunit Rpb4 [Theileria parva strain
Muguga]
gi|68351881|gb|EAN32642.1| DNA-directed RNA polymerase II subunit Rpb4, putative [Theileria
parva]
Length = 104
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 62/123 (50%), Gaps = 28/123 (22%)
Query: 80 DAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFK 139
D EF+N++ L + E+H++L ++ R
Sbjct: 7 DPTKFDLDPEFKNSKCLNLCELHLIL--------------------------GDQLRLHH 40
Query: 140 NRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQ 199
NR T+V + LH+FE+A++ NL P++ +EAK+LIPSL CR ++++ +IL+ ++
Sbjct: 41 NRND-TAVHTIERDGLLHEFEMASLVNLLPKSADEAKSLIPSL-CRIPDDKINKILELLE 98
Query: 200 TKR 202
+ R
Sbjct: 99 SYR 101
>gi|298709441|emb|CBJ31347.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 151
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 67/134 (50%), Gaps = 18/134 (13%)
Query: 78 EEDAGDLQFPKEF--ENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERF 135
EE+A LQF E ++ L +EV ++L+ ++ E E++ + F KT++Y +RF
Sbjct: 7 EENANLLQFGPEHAKDDMSCLSNAEVSVVLEKQRINYE--EKDINVTPAFSKTMSYVKRF 64
Query: 136 RKFKNRETITS---VRNLLTQ---------KKLHKFELAAIANL--CPETPEEAKALIPS 181
+T+ +R L Q +LH+FE+ +ANL EE ALIPS
Sbjct: 65 GGLGGSVKMTATSELREALQQFETFHEGESIRLHQFEIMQVANLMQADSEVEEVLALIPS 124
Query: 182 LECRFEEEELRQIL 195
L R EE+L IL
Sbjct: 125 LGARLTEEDLENIL 138
>gi|378733222|gb|EHY59681.1| DNA-directed RNA polymerase II subunit D [Exophiala dermatitidis
NIH/UT8656]
Length = 152
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 60/127 (47%), Gaps = 7/127 (5%)
Query: 80 DAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFK 139
+AG + EF+N TL +SE ++LQ E +E KT Y E F FK
Sbjct: 18 EAGAVLKLGEFQNEVTLNLSEARIILQKTLATRAARGGHYEETETTAKTRDYLEIFAVFK 77
Query: 140 NRETITSVRNLLTQ--KKLHKFELAAIANLCPETPEEAKALIPSLECRFE-----EEELR 192
V ++ + L +FE + + +L P +EAKALIPSLE + E E EL
Sbjct: 78 ELAEAQQVEGIINSYGENLERFEKSQLGSLVPTCSDEAKALIPSLERKVEDGVVTEAELE 137
Query: 193 QILDDIQ 199
I ++Q
Sbjct: 138 GICRELQ 144
>gi|169602343|ref|XP_001794593.1| hypothetical protein SNOG_04169 [Phaeosphaeria nodorum SN15]
gi|111066809|gb|EAT87929.1| hypothetical protein SNOG_04169 [Phaeosphaeria nodorum SN15]
Length = 177
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 9/137 (6%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLL-----QHRKTQNENAEEEQEFSE---VFQKTL 129
EE+ G+ +FE+ L +SE ++ RK EN V L
Sbjct: 33 EEEMGNEIKLGDFEDVHALSVSEARAVVTAVHEARRKKDPENNPLRDRIHNDQPVIMHFL 92
Query: 130 TYTERFRKFKNRETITSVRNLL-TQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEE 188
Y + F ++K E++ S+ L T +L E A + L P+T +EA LIPSL + +
Sbjct: 93 EYLDNFSRYKQEESLHSIAALFDTHPELTTVEKALLGTLTPDTADEATTLIPSLASKMDS 152
Query: 189 EELRQILDDIQTKRSLQ 205
+ L+ ILD++ R L
Sbjct: 153 DTLQPILDELTKMRMLD 169
>gi|388502530|gb|AFK39331.1| unknown [Lotus japonicus]
Length = 83
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEE--QEFSEVFQKTLTYTERF 135
EE+A +L+ EF A+ L+ EV ++L+H+ Q + + ++ + S+VF+K+L Y +RF
Sbjct: 6 EENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQSSDDPMNQVSQVFEKSLQYVKRF 65
Query: 136 RKFKNRETITSVR 148
++KN + + VR
Sbjct: 66 SRYKNPDAVRQVR 78
>gi|58265956|ref|XP_570134.1| hypothetical protein CND05580 [Cryptococcus neoformans var.
neoformans JEC21]
gi|57226367|gb|AAW42827.1| hypothetical protein CND05580 [Cryptococcus neoformans var.
neoformans JEC21]
Length = 162
Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 67/139 (48%), Gaps = 30/139 (21%)
Query: 67 IIMTHVLDQVVEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQ 126
I+++ Q+ EEDA LQF +F E L ++EV LL+ + Q N +
Sbjct: 41 ILISVAFPQIQEEDATKLQF-GDFAEGEALTLTEVATLLKAAR-QAPNVPPAPD------ 92
Query: 127 KTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRF 186
N T S R+ L+KFE+A I +L PE E A ALIPSLE R+
Sbjct: 93 ------------NNMRTALSARHGF----LNKFEIAQIMSLRPERVEVAVALIPSLE-RY 135
Query: 187 -----EEEELRQILDDIQT 200
E +L+ +LDD+++
Sbjct: 136 AQGDENEAQLQSLLDDVRS 154
>gi|303275790|ref|XP_003057189.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461541|gb|EEH58834.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 150
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 68/140 (48%), Gaps = 10/140 (7%)
Query: 76 VVEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEE---QEFSEVFQKTLTYT 132
V +EDA +L+ ++F +A L + EV+++ + + + E ++VF+ T Y
Sbjct: 11 VEDEDAQELRLGEDFTDAHCLSMDEVNLICAAKLGDDLDKIGEPTSTTQTKVFEMTNAYV 70
Query: 133 ERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFE----- 187
RF K + RNL Q L FE A + NL EEA A +PSL + +
Sbjct: 71 RRFAKEAASRQTEAFRNLYAQAGLTDFEGAIMVNLNFGDYEEAIAHLPSLARKGDDGILI 130
Query: 188 --EEELRQILDDIQTKRSLQ 205
EE++ +++DD+ R +
Sbjct: 131 HSEEKVSKLIDDMADVRRFE 150
>gi|189204019|ref|XP_001938345.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187985444|gb|EDU50932.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 175
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 11/126 (8%)
Query: 89 EFENAETLLISEVHMLLQ--HRKTQNENAEEE------QEFSEVFQKTLTYTERFRKFKN 140
+FE+ L +SE ++ H + ++ E S V L Y + F ++K
Sbjct: 44 DFEDVHALSVSEARAVVTAVHEARKKKDPENNPLRDRIHNDSGVIASFLDYLDNFARYKE 103
Query: 141 RETITSVRNLL-TQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQ 199
+++ S+ L ++ E A + L P+T EEA LIPSL + +E+EL+ ILD++
Sbjct: 104 EDSLHSIAALFDAHPEISVVEKALLGTLTPDTAEEATTLIPSL--KMDEDELQLILDELN 161
Query: 200 TKRSLQ 205
R L+
Sbjct: 162 KMRELE 167
>gi|451849491|gb|EMD62794.1| hypothetical protein COCSADRAFT_92778 [Cochliobolus sativus ND90Pr]
Length = 177
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 64/126 (50%), Gaps = 11/126 (8%)
Query: 89 EFENAETLLISEVHMLLQ--HRKTQNENAEEEQEFSEVFQKTLT------YTERFRKFKN 140
+FE+ L +SE ++ H + ++ E ++ ++T Y + F ++K
Sbjct: 45 DFEDVHALSVSEARAVVTAVHEARKKKDPENNPLRDRIYNDSITITQFLDYLDNFARYKE 104
Query: 141 RETITSVRNLL-TQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQ 199
+++ S+ L ++ E A + L P+T EEA LIPSL + +E+EL+ ILD++
Sbjct: 105 EDSLHSIAALFDAHPEISVVEKALLGTLTPDTAEEAITLIPSL--KMDEDELQLILDELN 162
Query: 200 TKRSLQ 205
R L+
Sbjct: 163 KMRELE 168
>gi|321262671|ref|XP_003196054.1| hypothetical protein CGB_I1280W [Cryptococcus gattii WM276]
gi|317462529|gb|ADV24267.1| Hypothetical protein CGB_I1280W [Cryptococcus gattii WM276]
Length = 152
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 66/138 (47%), Gaps = 26/138 (18%)
Query: 69 MTHVLDQVVEEDAGDLQFPKEFENAETLLISEVHMLLQH-RKTQNENAEEEQEFSEVFQK 127
+T V + EEDA LQF EF E L ++EV LL+ R+ N + +++
Sbjct: 27 ITAVSRSIQEEDATKLQF-GEFAEGEALTLTEVATLLKAARQAPNVPPAPDNKYARSPSS 85
Query: 128 TLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRF- 186
L + R L+KFE+A I +L PE E A ALIPSLE R+
Sbjct: 86 RLALSAR------------------HGFLNKFEIAQIMSLRPERVEVAVALIPSLE-RYA 126
Query: 187 ----EEEELRQILDDIQT 200
E +L+ +LDD+++
Sbjct: 127 QGDENEAQLQSLLDDVRS 144
>gi|303390270|ref|XP_003073366.1| DNA-directed RNA polymerase II fourth largest subunit
[Encephalitozoon intestinalis ATCC 50506]
gi|303302512|gb|ADM12006.1| DNA-directed RNA polymerase II fourth largest subunit
[Encephalitozoon intestinalis ATCC 50506]
Length = 104
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 58/103 (56%), Gaps = 2/103 (1%)
Query: 97 LISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVRNLLTQKKL 156
+++E LL+ +K + A+ S++F+ TL Y + F + K++ +R +
Sbjct: 1 MLAEARYLLEGQK-ERFRADFRSNASKIFRSTLGYLDEFCRIKDKSVAEDLRTTFSGLGF 59
Query: 157 HKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQ 199
+ E+A + +L P++ EEAK+LIPSL + +++ + ++ IQ
Sbjct: 60 SEVEIALLGSLFPQSVEEAKSLIPSLASK-DDDTISHAVEKIQ 101
>gi|66359592|ref|XP_626974.1| hypothetical protein [Cryptosporidium parvum Iowa II]
gi|46228397|gb|EAK89296.1| conserved hypothetical protein [Cryptosporidium parvum Iowa II]
Length = 124
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 37/55 (67%), Gaps = 3/55 (5%)
Query: 131 YTERFRKFKNRETITSVRNLLTQK-KLHKFELAAIANLCPETPEEAKALI--PSL 182
Y+ +F K KNR ++ +R L + KLH+FE+A++ NL P TP+EAK + PSL
Sbjct: 61 YSYKFGKIKNRASVILIREALDETTKLHEFEIASLVNLLPRTPDEAKVSMKHPSL 115
>gi|159042536|ref|YP_001541788.1| RNA polymerase Rpb4 [Caldivirga maquilingensis IC-167]
gi|157921371|gb|ABW02798.1| RNA polymerase Rpb4 [Caldivirga maquilingensis IC-167]
Length = 115
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 122 SEVFQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPS 181
S+V TL Y R+ K K + ++ L ++ L + + N+ P TPEE +A+I S
Sbjct: 31 SQVINITLDYLRRYSKVKPEDAEALIKELTSKYGLARITAIQVVNIMPSTPEELQAII-S 89
Query: 182 LECR-FEEEELRQILDDIQTKRS 203
+E R F+EE+L++I+D + + R+
Sbjct: 90 VEKRPFKEEDLKEIVDLLNSHRA 112
>gi|330918567|ref|XP_003298271.1| hypothetical protein PTT_08920 [Pyrenophora teres f. teres 0-1]
gi|311328637|gb|EFQ93641.1| hypothetical protein PTT_08920 [Pyrenophora teres f. teres 0-1]
Length = 184
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Query: 124 VFQKTLTYTERFRKFKNRETITSVRNLL-TQKKLHKFELAAIANLCPETPEEAKALIPSL 182
V L Y + F ++K +++ S+ L ++ E A + L P+T EEA LIPSL
Sbjct: 95 VIASFLDYLDNFARYKEEDSLHSIAALFDAHPEISVVEKALLGTLTPDTAEEATTLIPSL 154
Query: 183 ECRFEEEELRQILDDIQTKRSLQ 205
+ +E+EL+ ILD++ R L+
Sbjct: 155 --KMDEDELQLILDELNKMRELE 175
>gi|383320661|ref|YP_005381502.1| DNA-directed RNA polymerase subunit F [Methanocella conradii HZ254]
gi|379322031|gb|AFD00984.1| DNA-directed RNA polymerase, subunit F [Methanocella conradii
HZ254]
Length = 118
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 58/110 (52%), Gaps = 4/110 (3%)
Query: 88 KEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSV 147
K+ E+ E L + EV +L K + E A +E + + ++ + + F K +E+ V
Sbjct: 4 KKVESEELLTLPEVRDILNRIKEEREKAGQELRYEQ--KRAVEHANLFAKVGAKESRDMV 61
Query: 148 RNLLTQKKLHKFELAA-IANLCPETPEEAKALIPSLECRFEEEELRQILD 196
LLT +K+ K ++A IANLCP T +E +A+ E EL+ ILD
Sbjct: 62 NELLTLEKM-KLDIAVKIANLCPRTKDELRAIYAKERFTLSEAELKAILD 110
>gi|449434414|ref|XP_004134991.1| PREDICTED: uncharacterized protein LOC101213971 [Cucumis sativus]
Length = 242
Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 3/101 (2%)
Query: 85 QFPKEFENAETLLISEVHMLLQHRKTQNE--NAEEEQEFSEVFQKTLTYTERFRKFKNRE 142
+ PK + + L+ E LLQ + Q +A+ + F + L Y +R + N E
Sbjct: 98 ELPKNVK-CQCLMDCEAAQLLQGIQDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAE 156
Query: 143 TITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLE 183
++ V L + + E+ IAN+CP+T +E AL+PSL+
Sbjct: 157 SVRPVLETLKKYGVTDSEICVIANVCPDTTDEVFALLPSLK 197
>gi|224124738|ref|XP_002329936.1| predicted protein [Populus trichocarpa]
gi|222871958|gb|EEF09089.1| predicted protein [Populus trichocarpa]
Length = 197
Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 4/110 (3%)
Query: 91 ENAETLLISEVHMLLQHRKTQNENAEEEQ--EFSEVFQKTLTYTERFRKFKNRETITSVR 148
+NA+ L+ E +LQ + Q ++ + F K L Y + + N +++ V
Sbjct: 79 QNAKPLMDCEAAQILQGIQDQMVLLSQDPTIKLPVSFDKGLQYAKNGAHYTNPQSVRRVL 138
Query: 149 NLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDI 198
L + + E++ IAN+ PET +EA AL+PSL+ + LR+ L DI
Sbjct: 139 EALRKYGVSDGEISLIANVFPETADEAFALVPSLKSK--ASTLREPLKDI 186
>gi|449491225|ref|XP_004158834.1| PREDICTED: DNA-directed RNA polymerase II subunit rpb4-like
[Cucumis sativus]
Length = 220
Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 3/101 (2%)
Query: 85 QFPKEFENAETLLISEVHMLLQHRKTQNE--NAEEEQEFSEVFQKTLTYTERFRKFKNRE 142
+ PK + + L+ E LLQ + Q +A+ + F + L Y +R + N E
Sbjct: 98 ELPKNVK-CQCLMDCEAAQLLQGIQDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAE 156
Query: 143 TITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLE 183
++ V L + + E+ IAN+CP+T +E AL+PSL+
Sbjct: 157 SVRPVLETLKKYGVTDSEICVIANVCPDTTDEVFALLPSLK 197
>gi|357017513|gb|AET50785.1| hypothetical protein [Eimeria tenella]
Length = 69
Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 141 RETITSVR-NLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQ 199
R + +R +L + L +FELA + NL P TP+EAKA IPSL R L +I+D ++
Sbjct: 4 RTAVVEIRKHLEREGDLQQFELALLVNLLPRTPDEAKAHIPSL-IRLSAARLSRIIDTLE 62
Query: 200 TKR 202
R
Sbjct: 63 VFR 65
>gi|401888278|gb|EJT52239.1| hypothetical protein A1Q1_05449 [Trichosporon asahii var. asahii
CBS 2479]
gi|406701811|gb|EKD04922.1| hypothetical protein A1Q2_00783 [Trichosporon asahii var. asahii
CBS 8904]
Length = 152
Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 61/116 (52%), Gaps = 11/116 (9%)
Query: 92 NAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVRNLL 151
N E L ++EV LL ++++ ++V++ T+TY + F + +R L
Sbjct: 33 NGEALTLAEVRQLLS--ISRDQVGAPPAPDNKVYKSTITYVDEFANM-DASLCEGMRGAL 89
Query: 152 TQKK--LHKFELAAIANLCPETPEEAKALIPSLECRF-----EEEELRQILDDIQT 200
+ L+ FE+A I +L PE E A ALIPSLE R+ EE L +L++++T
Sbjct: 90 MARPGFLNNFEIAQIMHLRPERVEVAVALIPSLE-RYAQGDESEEYLAGLLEEVRT 144
>gi|300708648|ref|XP_002996499.1| hypothetical protein NCER_100401 [Nosema ceranae BRL01]
gi|239605806|gb|EEQ82828.1| hypothetical protein NCER_100401 [Nosema ceranae BRL01]
Length = 118
Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
Query: 88 KEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSV 147
++ +++ + ++EV LL+ K ++ + ++ ++TL Y E+F K + + +
Sbjct: 6 QDLKDSHPVTLAEVRYLLETVKDRSSVDNRSASY-KILKQTLNYVEKFCKIEEKSLADDL 64
Query: 148 RNLLTQKKLHKFELAAIANLCPETPEEAKALIPSL 182
R+ L ++ E+A + +L P++ +EAK LIPSL
Sbjct: 65 RSSLFNCGCNEVEIALLGSLFPQSIDEAKMLIPSL 99
>gi|225468957|ref|XP_002274855.1| PREDICTED: uncharacterized protein LOC100246461 isoform 1 [Vitis
vinifera]
gi|359495604|ref|XP_003635035.1| PREDICTED: uncharacterized protein LOC100246461 isoform 2 [Vitis
vinifera]
gi|297736694|emb|CBI25730.3| unnamed protein product [Vitis vinifera]
Length = 239
Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 57/110 (51%), Gaps = 4/110 (3%)
Query: 91 ENAETLLISEVHMLLQHRKTQNENAEEEQ--EFSEVFQKTLTYTERFRKFKNRETITSVR 148
+NA+ ++ E ++L+ + Q E+ + F K L Y + + + +++ V
Sbjct: 109 KNAKCMMDCEAALILKGIQEQMVVLSEDPTIKIPLSFNKGLQYAQSSNCYASPQSVRLVL 168
Query: 149 NLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDI 198
L++ + E+ IAN CPET +E AL+PSL+ ++ LR+ L D+
Sbjct: 169 EPLSKYGVSDGEICVIANTCPETIDEVFALVPSLKPKW--STLREPLKDV 216
>gi|47028255|gb|AAT09060.1| RNA polymerase 2 15.9 kDa subunit [Bigelowiella natans]
Length = 172
Score = 43.5 bits (101), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 23/138 (16%)
Query: 75 QVVEEDAGDLQFPKEFENAETLLISEVHMLLQ---HRKTQNENAEEEQEFSEVFQKTLTY 131
Q +E DA L+ KEF A L +EV ++L R+T ++ ++ + + TL Y
Sbjct: 33 QSMELDASQLKLGKEFHEAHCLWNAEVAVILDTVIKRETLSDRNKD------LVKTTLDY 86
Query: 132 TERFRKFKNRETITSVRNLLTQK------------KLHKFELAAIANLCPETPEEAKALI 179
+F+ F +E R + + +FE+A +AN EEA+ L+
Sbjct: 87 VNKFKYFPTKEMAKKAREYVEDNTKPDRKGGKPGIDIEQFEVAEMANTGIFQAEEARELL 146
Query: 180 PSLECRFE--EEELRQIL 195
P+++ +FE E+EL L
Sbjct: 147 PTVKEKFEGREDELEDFL 164
>gi|356532865|ref|XP_003534990.1| PREDICTED: DNA-directed RNA polymerase II subunit rpb4-like
[Glycine max]
Length = 211
Score = 43.5 bits (101), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%)
Query: 125 FQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLEC 184
F K L Y + K+ + ++I + + L + + E+ I N+CPET +E AL+PSL+
Sbjct: 129 FDKGLQYAKSNSKYLDLQSIRHILDRLAKCGVTDSEICVIGNVCPETIDEVFALLPSLKD 188
Query: 185 R 185
R
Sbjct: 189 R 189
>gi|301118218|ref|XP_002906837.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262108186|gb|EEY66238.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 111
Score = 43.5 bits (101), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 15/101 (14%)
Query: 80 DAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFK 139
DA +L +EFEN L +EV ++L+ K Q E+++ F+ VF+KT +Y RF K
Sbjct: 13 DAAELNLGEEFENDTCLSNAEVAIILE--KQQGNYNEQKKMFTGVFKKTQSYVTRFTGTK 70
Query: 140 ----NRETITSVRNLLTQ---------KKLHKFELAAIANL 167
N+ + +R+ L +L +FE+A+ +NL
Sbjct: 71 DPVANQAAVIEIRDALQSHSFEHDDEVHRLEEFEIASSSNL 111
>gi|269860501|ref|XP_002649971.1| hypothetical protein EBI_25980 [Enterocytozoon bieneusi H348]
gi|220066590|gb|EED44066.1| hypothetical protein EBI_25980 [Enterocytozoon bieneusi H348]
Length = 80
Score = 43.5 bits (101), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%)
Query: 124 VFQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLE 183
+F +T Y E+F K ++ I +R L ++ E A++ NL P+ EEA+ LIPSLE
Sbjct: 1 MFLQTYEYVEKFCKINDKYIIDELRIFLEDLGINDEENASVINLLPKNIEEARLLIPSLE 60
>gi|255568114|ref|XP_002525033.1| conserved hypothetical protein [Ricinus communis]
gi|223535695|gb|EEF37360.1| conserved hypothetical protein [Ricinus communis]
Length = 203
Score = 43.1 bits (100), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 70/146 (47%), Gaps = 16/146 (10%)
Query: 59 SDRVSIGYIIMT----HVLDQVVEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNE- 113
D+VS G I + L+ +E+D PK NA+ L+ E +LQ + Q
Sbjct: 57 GDKVSNGVKISSTKEPQPLELKIEQD-----LPK---NAKCLMDCEAAQVLQGIQEQMVL 108
Query: 114 -NAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETP 172
+ + + F + L + +F N +++ + L + + + E+ IAN+CP+
Sbjct: 109 LSRDPTIKLPVSFDRALQHARTGARFTNPQSVRRILEGLKKHGVSEGEICTIANVCPDGV 168
Query: 173 EEAKALIPSLECRFEEEELRQILDDI 198
+E AL+PSL+ + + LR+ L DI
Sbjct: 169 DEVFALVPSLKSK--KNVLREPLKDI 192
>gi|430811367|emb|CCJ31200.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 58
Score = 43.1 bits (100), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 156 LHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKRSLQ 205
LH FE A + LC E EEA+ L+PSL + +E L+ +LD++ R Q
Sbjct: 8 LHSFETAQLGTLCCEEAEEARTLVPSLADKKSDEALQTLLDELSNLRRFQ 57
>gi|297599854|ref|NP_001047971.2| Os02g0723300 [Oryza sativa Japonica Group]
gi|255671217|dbj|BAF09885.2| Os02g0723300, partial [Oryza sativa Japonica Group]
Length = 128
Score = 42.7 bits (99), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 92 NAETLLISEVHMLLQ--HRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVRN 149
N+ L+ EV LLQ H + + + + E F K Y + +F +++ V +
Sbjct: 11 NSCILMNCEVAELLQEIHEHMAILSEDPKIKIPESFDKAFQYVKEGNQFSTAQSVKQVLD 70
Query: 150 LLTQKKLHKFELAAIANLCPETPEEAKALIPSLE 183
L + + E+ IAN+ PET EE AL+PSL+
Sbjct: 71 PLRKYGVSDGEMCLIANVGPETIEEVYALVPSLK 104
>gi|282163394|ref|YP_003355779.1| putative DNA-directed RNA polymerase subunit F [Methanocella
paludicola SANAE]
gi|282155708|dbj|BAI60796.1| putative DNA-directed RNA polymerase subunit F [Methanocella
paludicola SANAE]
Length = 116
Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 4/104 (3%)
Query: 94 ETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVRNLLTQ 153
E + + EV L + + E A +E + + ++ + + +F K +E+ V LLT
Sbjct: 10 ELITLPEVRDTLNAIRDEREKAGQELRYEQ--KRAVEHANKFSKIGAKESRDMVNELLTL 67
Query: 154 KKLHKFELAA-IANLCPETPEEAKALIPSLECRFEEEELRQILD 196
+K+ K ++A IANLCP + +E +A+ E EL+ ILD
Sbjct: 68 EKM-KLDIAVKIANLCPRSKDELRAIYAKERFTLNEAELKAILD 110
>gi|378755722|gb|EHY65748.1| hypothetical protein NERG_01355 [Nematocida sp. 1 ERTm2]
Length = 116
Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 116 EEEQEFSEVFQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEA 175
+ E +E FQ L Y +N VR L + +E + + NL PE +A
Sbjct: 29 DRRMEGNEAFQSILKYLRVCPSPRNTSWAERVRRTLVSGGMTDYEASLVINLSPERNTDA 88
Query: 176 KALIPSLECRFEEEELRQILDDIQ 199
KALIPSL R + L +L+ I
Sbjct: 89 KALIPSL-SRMDNYALDALLNTIS 111
>gi|347522722|ref|YP_004780292.1| RNA polymerase Rpb4 [Pyrolobus fumarii 1A]
gi|343459604|gb|AEM38040.1| RNA polymerase Rpb4 [Pyrolobus fumarii 1A]
Length = 117
Score = 41.6 bits (96), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 117 EEQEFSEVFQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAK 176
EEQ +SE+ +TL Y F K + + +V L T+ L+++ I N+ P T E K
Sbjct: 26 EEQPYSEIVYRTLNYLRMFSKCTSDNAVKAVERLKTEFGLNEYTCVLIVNIRPRTVYELK 85
Query: 177 ALIPSLEC--RFEEEELRQILD 196
A++ + + +E+L++I++
Sbjct: 86 AILAAAKTGLTLTDEDLKKIIE 107
>gi|215769042|dbj|BAH01271.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 239
Score = 41.6 bits (96), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 92 NAETLLISEVHMLLQ--HRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVRN 149
N+ L+ EV LLQ H + + + + E F K Y + +F +++ V +
Sbjct: 122 NSCILMNCEVAELLQEIHEHMAILSEDPKIKIPESFDKAFQYVKEGNQFSTAQSVKQVLD 181
Query: 150 LLTQKKLHKFELAAIANLCPETPEEAKALIPSLEC 184
L + + E+ IAN+ PET EE AL+PSL+
Sbjct: 182 PLRKYGVSDGEMCLIANVGPETIEEVYALVPSLKA 216
>gi|297804626|ref|XP_002870197.1| At4g15950 [Arabidopsis lyrata subsp. lyrata]
gi|297316033|gb|EFH46456.1| At4g15950 [Arabidopsis lyrata subsp. lyrata]
Length = 210
Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
Query: 91 ENAETLLISEVHMLLQHRKTQNENAEEEQ--EFSEVFQKTLTYTERFRKFKNRETITSVR 148
ENAE ++ E +L K E+ + + + L Y + + N +++ V
Sbjct: 92 ENAECMMDCEAFQILDGIKGHLVGLSEDPSIKIPVSYDRALAYVDSCVHYSNPQSVRKVL 151
Query: 149 NLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDD 197
L + E+ IAN P+T +E A IPSL+ + +E + Q L D
Sbjct: 152 EPLKTHGVSDGEMCVIANASPDTVDEVLAFIPSLKAK--KEVINQPLQD 198
>gi|218191483|gb|EEC73910.1| hypothetical protein OsI_08747 [Oryza sativa Indica Group]
gi|222623580|gb|EEE57712.1| hypothetical protein OsJ_08195 [Oryza sativa Japonica Group]
Length = 231
Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 92 NAETLLISEVHMLLQ--HRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVRN 149
N+ L+ EV LLQ H + + + + E F K Y + +F +++ V +
Sbjct: 114 NSCILMNCEVAELLQEIHEHMAILSEDPKIKIPESFDKAFQYVKEGNQFSTAQSVKQVLD 173
Query: 150 LLTQKKLHKFELAAIANLCPETPEEAKALIPSLEC 184
L + + E+ IAN+ PET EE AL+PSL+
Sbjct: 174 PLRKYGVSDGEMCLIANVGPETIEEVYALVPSLKA 208
>gi|387593159|gb|EIJ88183.1| hypothetical protein NEQG_01627 [Nematocida parisii ERTm3]
gi|387596128|gb|EIJ93750.1| hypothetical protein NEPG_01322 [Nematocida parisii ERTm1]
Length = 116
Score = 41.2 bits (95), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 49/112 (43%), Gaps = 12/112 (10%)
Query: 88 KEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSV 147
K +AE L+I E +T+ + E ++ FQ L Y +N V
Sbjct: 12 KSISSAEALIIVE--------RTR---MDRRMEGNDAFQSILKYLRLCPSPRNPSWAERV 60
Query: 148 RNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQ 199
R L + +E + I NL PE +AKALIPSL R + L +L+ I
Sbjct: 61 RRTLVSGGMTDYEASLIINLSPERHIDAKALIPSLN-RMDNYSLDTLLNSIS 111
>gi|45735999|dbj|BAD13027.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 238
Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 9/102 (8%)
Query: 92 NAETLLISEVHMLLQ--HRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETI----- 144
N+ L+ EV LLQ H + + + + E F K Y + +F +++
Sbjct: 114 NSCILMNCEVAELLQEIHEHMAILSEDPKIKIPESFDKAFQYVKEGNQFSTAQSVKQVLD 173
Query: 145 --TSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLEC 184
TS+R+ L + + E+ IAN+ PET EE AL+PSL+
Sbjct: 174 SLTSIRSPLRKYGVSDGEMCLIANVGPETIEEVYALVPSLKA 215
>gi|20090303|ref|NP_616378.1| hypothetical protein MA1444 [Methanosarcina acetivorans C2A]
gi|19915303|gb|AAM04858.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
Length = 117
Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 2/109 (1%)
Query: 88 KEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSV 147
KE N E L ++EV +L + +E E+ E + F+K L + E+F K ++ V
Sbjct: 4 KEVLNEELLTLAEVKDILS--RIADERREQGIEVAYSFRKALHHAEQFSKINGEKSRELV 61
Query: 148 RNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
LL +K+ IA++ P++ +E +++ + EEL QILD
Sbjct: 62 NKLLELEKMKPVIAVRIADILPQSRDELRSIYAKEKYTLSNEELDQILD 110
>gi|146302847|ref|YP_001190163.1| DNA-directed RNA polymerase F [Metallosphaera sedula DSM 5348]
gi|145701097|gb|ABP94239.1| DNA-directed RNA polymerase, subunit F [Metallosphaera sedula DSM
5348]
Length = 112
Score = 40.4 bits (93), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 51/86 (59%), Gaps = 9/86 (10%)
Query: 122 SEVFQKTLTYTERFRKF---KNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKAL 178
S + QKT Y K R+ + ++ ++++K++ +A I++LCP+ P+ +A+
Sbjct: 31 SSILQKTFEYLNSLEKCSAENARKLMEELKGMISKKEV----MAMISSLCPDNPDGLRAI 86
Query: 179 IPSLECR-FEEEELRQILDDIQTKRS 203
+ +LE + F +EEL +ILD I+ R+
Sbjct: 87 L-TLEGKTFSQEELEKILDLIKRYRN 111
>gi|326521954|dbj|BAK04105.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 231
Score = 39.7 bits (91), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%)
Query: 123 EVFQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSL 182
E F K Y + F + + + + L ++ E+ IAN+ PET EE ALIPSL
Sbjct: 147 ESFDKAFLYAKEGNHFTSAKLVKEILGPLKDYGVNDGEICMIANIGPETIEEVYALIPSL 206
Query: 183 EC 184
+
Sbjct: 207 KA 208
>gi|443916881|gb|ELU37814.1| hypothetical protein AG1IA_08154 [Rhizoctonia solani AG-1 IA]
Length = 51
Score = 39.3 bits (90), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 22/32 (68%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLLQHRK 109
EEDA L+ EF NA LLISEV LL+HR+
Sbjct: 12 EEDAAALKLGSEFNNAGCLLISEVKYLLEHRE 43
>gi|350398939|ref|XP_003485357.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC9-like
isoform 1 [Bombus impatiens]
gi|350398942|ref|XP_003485358.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC9-like
isoform 2 [Bombus impatiens]
Length = 125
Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 100 EVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFR-KFKNRETITSVRNLLTQKKLHK 158
EV +LQ+ K+ + ++ + + + +T+ Y E+ K + E I + L KL K
Sbjct: 15 EVLNILQNIKSNKKQKMKQNQLASITYQTIRYLEKTPCKRQTPEKIKGLLQALEPYKLTK 74
Query: 159 FELAAIANLCPETPEEAKALIPSLECRFEEEELRQIL 195
E + N+CP+TP E + +I E R ++E+ +L
Sbjct: 75 CEKLTLLNMCPKTPLEIQLIIEDSEDRLTDDEVNSLL 111
>gi|50253574|gb|AAT71989.1| At4g15950 [Arabidopsis thaliana]
gi|51971649|dbj|BAD44489.1| unnamed protein product [Arabidopsis thaliana]
Length = 205
Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
Query: 91 ENAETLLISEVHMLLQHRKTQNENAEEEQ--EFSEVFQKTLTYTERFRKFKNRETITSVR 148
ENAE ++ E +L K Q E+ + + + L Y E + N +++ V
Sbjct: 87 ENAECMMDCEAFQILDGIKGQLVGLSEDPSIKIPVSYDRALAYVESCVHYTNPQSVRKVL 146
Query: 149 NLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDD 197
L + E+ IAN E+ +E A IPSL+ + +E + Q L D
Sbjct: 147 EPLKTYGISDGEMCVIANASSESVDEVLAFIPSLKTK--KEVINQPLQD 193
>gi|297526048|ref|YP_003668072.1| RNA polymerase Rpb4 [Staphylothermus hellenicus DSM 12710]
gi|297254964|gb|ADI31173.1| RNA polymerase Rpb4 [Staphylothermus hellenicus DSM 12710]
Length = 120
Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 108 RKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANL 167
+K ++ E E S + KTL Y F K + E+ ++RN+L L + I N+
Sbjct: 25 KKAVDKIQEREGSVSMLLSKTLHYLSEFSKMEP-ESSEALRNVLKNMDLKDETIVMIINI 83
Query: 168 CPETPEEAKALIPSLECRFEEEELRQILDDIQ 199
CP+T +E + L E + E +QIL+ I+
Sbjct: 84 CPQTLDELRILFELEEKVIDTETAQQILEAIK 115
>gi|334186572|ref|NP_193330.2| RNA polymerase II, Rpb4, core protein [Arabidopsis thaliana]
gi|332658269|gb|AEE83669.1| RNA polymerase II, Rpb4, core protein [Arabidopsis thaliana]
Length = 205
Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
Query: 91 ENAETLLISEVHMLLQHRKTQNENAEEEQ--EFSEVFQKTLTYTERFRKFKNRETITSVR 148
ENAE ++ E +L K Q E+ + + + L Y E + N +++ V
Sbjct: 87 ENAECMMDCEAFQILDGIKGQLVGLSEDPSIKIPVSYDRALAYVESCVHYTNPQSVRKVL 146
Query: 149 NLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDD 197
L + E+ IAN E+ +E A IPSL+ + +E + Q L D
Sbjct: 147 EPLKTYGISDGEMCVIANASSESVDEVLAFIPSLKTK--KEVINQPLQD 193
>gi|212275294|ref|NP_001130236.1| uncharacterized protein LOC100191330 [Zea mays]
gi|194688634|gb|ACF78401.1| unknown [Zea mays]
gi|194692750|gb|ACF80459.1| unknown [Zea mays]
gi|195621576|gb|ACG32618.1| hypothetical protein [Zea mays]
gi|195623648|gb|ACG33654.1| hypothetical protein [Zea mays]
gi|238014082|gb|ACR38076.1| unknown [Zea mays]
gi|413923710|gb|AFW63642.1| alpha-6-galactosyltransferase, mRNA isoform 1 [Zea mays]
gi|413923711|gb|AFW63643.1| alpha-6-galactosyltransferase, mRNA isoform 2 [Zea mays]
gi|413923712|gb|AFW63644.1| alpha-6-galactosyltransferase, mRNA isoform 3 [Zea mays]
gi|413923713|gb|AFW63645.1| alpha-6-galactosyltransferase, mRNA isoform 4 [Zea mays]
gi|413923714|gb|AFW63646.1| hypothetical protein ZEAMMB73_143964 [Zea mays]
Length = 219
Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
Query: 92 NAETLLISEVHMLLQ--HRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVRN 149
N+ L+ E LLQ H + + + + E F K Y++ F ++
Sbjct: 102 NSRMLMNCEAAELLQEIHEHMAILSEDPKIKIPESFDKAFQYSKDGNHFTTASSVKQAIE 161
Query: 150 LLTQKKLHKFELAAIANLCPETPEEAKALIPSLECR 185
L + + E+ IAN+ PET EE AL+PSL+
Sbjct: 162 PLKKCGVSDGEICMIANIGPETVEEVYALVPSLKAN 197
>gi|399949622|gb|AFP65280.1| RNA polymerase II, subunit F [Chroomonas mesostigmatica CCMP1168]
Length = 137
Score = 37.4 bits (85), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 17/119 (14%)
Query: 96 LLISEVHMLLQHRKTQNEN-----AEEEQEFSEVFQKTLTYTERFRKFKNRETITSVRNL 150
L ISEV +Q RK E+ E + + +F+KT YT+RF + + + +RN+
Sbjct: 19 LSISEVFYFVQKRKFLIEDFNIIEKEAPEHKNVIFEKTYEYTKRFSQIGKYKP-SLIRNI 77
Query: 151 LTQ---------KKLHKFELAA--IANLCPETPEEAKALIPSLECRFEEEELRQILDDI 198
L + K + K + I +L P T EA LIP L F +E++ I+ I
Sbjct: 78 LLKFSNNIEILRKGIFKIRINVCKIIDLIPYTVREACILIPKLTEVFGPKEIKLIIGLI 136
>gi|255563134|ref|XP_002522571.1| cysteine protease, putative [Ricinus communis]
gi|223538262|gb|EEF39871.1| cysteine protease, putative [Ricinus communis]
Length = 343
Score = 37.4 bits (85), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 86 FPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNR 141
P+ NAE + + +H +T ++NAE+E+ F ++F+ L Y E F K N+
Sbjct: 26 MPRPLLNAEAIAEKHEQWMARHGRTYHDNAEKERRF-QIFKNNLDYIENFNKAFNK 80
>gi|402471787|gb|EJW05341.1| hypothetical protein EDEG_00611 [Edhazardia aedis USNM 41457]
Length = 107
Score = 37.0 bits (84), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 124 VFQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLE 183
+ + + Y F K ++ ++R L + L + E+A IA++ PE E +L+PSL+
Sbjct: 28 IHESVVKYLSSFDSIKTKDVAQNLRTHLLKFNLSQEEVALIASILPEYKSEVLSLVPSLK 87
Query: 184 CRFEEEELRQILDDIQT 200
R ++ + QI+ I++
Sbjct: 88 -RLDDVVIDQIVKGIRS 103
>gi|126465676|ref|YP_001040785.1| DNA-directed RNA polymerase subunit F [Staphylothermus marinus F1]
gi|126014499|gb|ABN69877.1| DNA-directed RNA polymerase, subunit F [Staphylothermus marinus F1]
Length = 120
Score = 37.0 bits (84), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 108 RKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANL 167
+K ++ E E S + KTL Y F K + E+ ++RN+L L + I N+
Sbjct: 25 KKAVDKIQEREGSVSMLLSKTLHYLSEFSKMEP-ESSEALRNVLKNMDLKDETIIMIINI 83
Query: 168 CPETPEEAKALIPSLECRFEEEELRQILDDIQ 199
CP+T +E + L E + E +QIL+ I+
Sbjct: 84 CPQTLDELRILFELEEKVIDTETAQQILETIK 115
>gi|73670679|ref|YP_306694.1| DNA-directed RNA polymerase subunit F [Methanosarcina barkeri str.
Fusaro]
gi|72397841|gb|AAZ72114.1| DNA-directed RNA polymerase, subunit F [Methanosarcina barkeri str.
Fusaro]
Length = 129
Score = 37.0 bits (84), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 2/109 (1%)
Query: 88 KEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSV 147
KE + E L ++EV LL + E E+ E F+K L + E+F K ++ V
Sbjct: 16 KEVLSEELLTLAEVRELLT--RITEERREKGLEVGYGFRKALRHAEQFSKISGEKSRELV 73
Query: 148 RNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
LL +K+ IA++ P++ +E +++ + EEL QILD
Sbjct: 74 NKLLELEKMKPSIAIRIADILPQSRDEIRSIYAKEKYTLSNEELDQILD 122
>gi|219888911|gb|ACL54830.1| unknown [Zea mays]
Length = 115
Score = 37.0 bits (84), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%)
Query: 123 EVFQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSL 182
E F K Y++ F ++ L + + E+ IAN+ PET EE AL+PSL
Sbjct: 31 ESFDKAFQYSKDGNHFTTASSVKQAIEPLKKCGVSDGEICMIANIGPETVEEVYALVPSL 90
>gi|71420426|ref|XP_811486.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70876155|gb|EAN89635.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 169
Score = 37.0 bits (84), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 147 VRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQT 200
+ L ++ FE+ ++ LCP++ EEA L+PSL R+E +L L+ + +
Sbjct: 116 IHGTLKTARMKPFEVVSLGTLCPKSVEEALVLVPSL-ARYEPSDLNLALNTLDS 168
>gi|71663674|ref|XP_818827.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70884099|gb|EAN96976.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 169
Score = 37.0 bits (84), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 147 VRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQT 200
+ L ++ FE+ ++ LCP++ EEA L+PSL R+E +L L+ + +
Sbjct: 116 IHGTLKTARMKPFEVVSLGTLCPKSVEEALVLVPSL-ARYEPSDLNLALNTLDS 168
>gi|342180410|emb|CCC89887.1| conserved hypothetical protein [Trypanosoma congolense IL3000]
Length = 168
Score = 37.0 bits (84), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 154 KKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQT 200
+++ FE+ A+A L P+T +EA L+PSL RFE EL L + +
Sbjct: 122 QRMKAFEVVALATLRPKTVDEAVVLVPSL-ARFEPSELGSALGTLDS 167
>gi|452211051|ref|YP_007491165.1| DNA-directed RNA polymerase subunit F [Methanosarcina mazei Tuc01]
gi|452100953|gb|AGF97893.1| DNA-directed RNA polymerase subunit F [Methanosarcina mazei Tuc01]
Length = 117
Score = 36.6 bits (83), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
Query: 88 KEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSV 147
KE N E L ++EV L E E+ E S F+K L + E+F + ++ V
Sbjct: 4 KEVLNEELLTLAEVKDKLTA--IAEERREKGIEVSYSFRKALNHAEQFSRIGGAKSRELV 61
Query: 148 RNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
LL +K+ IA++ P++ +E +++ + EEL QILD
Sbjct: 62 NKLLELEKMKPVIAVRIADILPQSRDELRSIYAKEKYTLSNEELDQILD 110
>gi|357448135|ref|XP_003594343.1| DNA-directed RNA polymerase II subunit rpb4 [Medicago truncatula]
gi|124360902|gb|ABN08874.1| RNA polymerase Rpb4 [Medicago truncatula]
gi|355483391|gb|AES64594.1| DNA-directed RNA polymerase II subunit rpb4 [Medicago truncatula]
Length = 223
Score = 36.2 bits (82), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 140 NRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECR 185
N E++ L L + E+ IAN+CPET +E AL+PSL+ +
Sbjct: 156 NPESVRHTLEPLMNHDLTESEICVIANVCPETADEVFALLPSLKSK 201
>gi|340712130|ref|XP_003394617.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC9-like
isoform 1 [Bombus terrestris]
gi|340712132|ref|XP_003394618.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC9-like
isoform 2 [Bombus terrestris]
Length = 125
Score = 36.2 bits (82), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 100 EVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFR-KFKNRETITSVRNLLTQKKLHK 158
EV +LQ+ K+ + ++ + + + +T+ Y E K + E I + L KL K
Sbjct: 15 EVLNILQNIKSNKKQKMKQNQLASITYQTIRYLEETPCKRQTPEKIRGLLQALEPYKLTK 74
Query: 159 FELAAIANLCPETPEEAKALIPSLECRFEEEELRQIL 195
E + N+CP+TP E + +I E R ++E+ +L
Sbjct: 75 CEKLTLLNMCPKTPLEIQLIIEDSEDRLTDDEVNSLL 111
>gi|388515433|gb|AFK45778.1| unknown [Medicago truncatula]
Length = 201
Score = 36.2 bits (82), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 140 NRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECR 185
N E++ L L + E+ IAN+CPET +E AL+PSL+ +
Sbjct: 134 NPESVRHTLEPLMNHDLTESEICVIANVCPETADEVFALLPSLKSK 179
>gi|21228639|ref|NP_634561.1| hypothetical protein MM_2537 [Methanosarcina mazei Go1]
gi|20907139|gb|AAM32233.1| hypothetical protein MM_2537 [Methanosarcina mazei Go1]
Length = 117
Score = 36.2 bits (82), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
Query: 88 KEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSV 147
KE N E L ++EV L E E+ E S F+K L + E+F + ++ V
Sbjct: 4 KEVLNEELLTLAEVKDKLTA--IAEERREKGIEVSYSFRKALNHAEQFSRISGVKSRELV 61
Query: 148 RNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
LL +K+ IA++ P++ +E +++ + EEL QILD
Sbjct: 62 NKLLELEKMKPVIAVRIADILPQSRDELRSIYAKEKYTLSNEELDQILD 110
>gi|72387385|ref|XP_844117.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|62360625|gb|AAX81036.1| hypothetical protein, conserved [Trypanosoma brucei]
gi|70800649|gb|AAZ10558.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 162
Score = 36.2 bits (82), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 153 QKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
++ + FE+ A+ L P+T +EA+ LIPSL RFE +L ++L+
Sbjct: 115 EEAMKMFEVVALGTLQPKTADEARELIPSL-GRFEPADLNKVLE 157
>gi|261327279|emb|CBH10255.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
DAL972]
Length = 162
Score = 36.2 bits (82), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 153 QKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
++ + FE+ A+ L P+T +EA+ LIPSL RFE +L ++L+
Sbjct: 115 EEAMKMFEVVALGTLQPKTADEARELIPSL-GRFEPADLNKVLE 157
>gi|328784036|ref|XP_001120164.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC9-like [Apis
mellifera]
Length = 125
Score = 36.2 bits (82), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
Query: 100 EVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFR-KFKNRETITSVRNLLTQKKLHK 158
EV +LQ K + ++ + + + +T+ Y E K ++ E I + KL K
Sbjct: 15 EVLNILQSIKANKKQKMKQNQLASITYQTIRYLENTSCKIQSPEKIKDFLRAMEPFKLTK 74
Query: 159 FELAAIANLCPETPEEAKALIPSLECRFEEEELRQIL 195
E+ + N+CP+TP E + ++ E R +EE+ +L
Sbjct: 75 CEILTLLNVCPKTPLEIQLIVEDSEDRLTDEEVDSLL 111
>gi|403353084|gb|EJY76076.1| RNA polymerase 16kd subunit, RPB4-like, putative [Oxytricha
trifallax]
Length = 142
Score = 36.2 bits (82), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 122 SEVFQKTLTYTERFRKFKNRETITSVRNLLTQ-KKLHKFELAAIANLCPETPEEAKALIP 180
E+ +KT Y +F F+ ++ + +R + + ++ + EL + NL P + EEA LIP
Sbjct: 61 DEMQRKTEQYVNKFNIFEQKDKVMVIRAEMQKFNEIPEIELILLWNLAPGSYEEAVTLIP 120
Query: 181 SLECRFEE 188
L+ R E+
Sbjct: 121 QLKDRPED 128
>gi|168032148|ref|XP_001768581.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680080|gb|EDQ66519.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 64
Score = 36.2 bits (82), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 122 SEVFQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANL 167
S +FQ+ L RF F N + + +R +L + +LHKFE N+
Sbjct: 15 SSIFQRKLRNVRRFGSFLNPDAVNQMREVLKRYRLHKFEECVAGNV 60
>gi|403337994|gb|EJY68227.1| RNA polymerase 16kd subunit, RPB4-like, putative [Oxytricha
trifallax]
Length = 142
Score = 35.8 bits (81), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 122 SEVFQKTLTYTERFRKFKNRETITSVRNLLTQ-KKLHKFELAAIANLCPETPEEAKALIP 180
E+ +KT Y +F F+ ++ + +R + + ++ + EL + NL P + EEA LIP
Sbjct: 61 DEMQRKTEQYVNKFNIFEQKDKVMVIRAEMQKFNEIPEIELILLWNLAPGSYEEAVTLIP 120
Query: 181 SLECRFEE 188
L+ R E+
Sbjct: 121 QLKDRPED 128
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.131 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,898,877,843
Number of Sequences: 23463169
Number of extensions: 105835496
Number of successful extensions: 345478
Number of sequences better than 100.0: 596
Number of HSP's better than 100.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 235
Number of HSP's that attempted gapping in prelim test: 344854
Number of HSP's gapped (non-prelim): 625
length of query: 206
length of database: 8,064,228,071
effective HSP length: 136
effective length of query: 70
effective length of database: 9,168,204,383
effective search space: 641774306810
effective search space used: 641774306810
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 73 (32.7 bits)