Query psy14375
Match_columns 206
No_of_seqs 127 out of 288
Neff 5.1
Searched_HMMs 46136
Date Fri Aug 16 18:15:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14375.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14375hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2351|consensus 100.0 2.8E-40 6.1E-45 261.7 9.7 132 74-205 2-134 (134)
2 COG5250 RPB4 RNA polymerase II 100.0 3.2E-31 7E-36 208.9 9.4 131 75-205 4-138 (138)
3 smart00657 RPOL4c DNA-directed 100.0 6.7E-30 1.4E-34 200.9 11.6 118 88-205 1-118 (118)
4 PRK14981 DNA-directed RNA poly 100.0 2.3E-29 5E-34 196.9 11.0 112 85-203 1-112 (112)
5 PF03874 RNA_pol_Rpb4: RNA pol 99.9 2.7E-25 6E-30 172.4 10.3 108 95-202 1-117 (117)
6 COG1460 Uncharacterized protei 99.8 1.3E-20 2.9E-25 147.7 9.9 112 85-203 2-113 (114)
7 KOG4168|consensus 98.7 4.4E-08 9.6E-13 80.0 7.2 110 92-201 7-130 (149)
8 PF07299 FBP: Fibronectin-bind 52.1 15 0.00034 31.9 3.2 73 120-201 6-78 (208)
9 PF06569 DUF1128: Protein of u 45.7 34 0.00073 25.2 3.6 37 167-203 33-71 (71)
10 PF11829 DUF3349: Protein of u 41.2 78 0.0017 24.4 5.2 78 122-200 2-87 (96)
11 PF00570 HRDC: HRDC domain Blo 40.3 13 0.00029 25.3 0.8 23 156-178 27-49 (68)
12 PF11459 DUF2893: Protein of u 40.2 30 0.00064 25.2 2.6 37 164-201 10-48 (69)
13 PHA00542 putative Cro-like pro 38.1 74 0.0016 23.1 4.5 57 146-205 22-78 (82)
14 PF08535 KorB: KorB domain; I 36.2 57 0.0012 24.0 3.7 81 119-201 7-89 (93)
15 smart00341 HRDC Helicase and R 31.9 54 0.0012 22.8 2.8 48 155-203 29-76 (81)
16 PF07985 SRR1: SRR1; InterPro 31.7 14 0.00031 25.3 -0.2 10 1-10 2-11 (56)
17 PF13833 EF-hand_8: EF-hand do 30.9 51 0.0011 21.1 2.4 29 171-199 6-35 (54)
18 KOG4204|consensus 28.3 4.1E+02 0.0089 23.3 8.4 102 96-203 17-160 (231)
19 PF12875 DUF3826: Protein of u 27.9 64 0.0014 27.9 3.1 61 128-204 83-143 (188)
20 KOG4479|consensus 27.3 87 0.0019 23.9 3.3 54 141-201 35-89 (92)
21 TIGR01878 cas_Csa5 CRISPR-asso 25.5 57 0.0012 25.3 2.2 68 125-199 4-78 (97)
22 cd05029 S-100A6 S-100A6: S-100 25.2 88 0.0019 23.0 3.1 30 171-200 49-82 (88)
23 PF10975 DUF2802: Protein of u 24.4 2.1E+02 0.0046 20.5 4.9 36 123-167 32-67 (70)
24 TIGR02498 type_III_ssaH type I 23.8 1.9E+02 0.0041 21.7 4.5 56 124-179 21-78 (79)
25 PHA02922 hypothetical protein; 22.2 2.6E+02 0.0056 23.4 5.4 78 122-200 62-150 (153)
26 TIGR01128 holA DNA polymerase 22.2 2.4E+02 0.0052 24.2 5.7 63 135-197 108-177 (302)
27 PRK10945 gene expression modul 22.1 1.7E+02 0.0037 21.6 3.9 34 127-161 7-40 (72)
28 PF06207 DUF1002: Protein of u 21.7 1.1E+02 0.0024 26.9 3.4 43 163-205 165-211 (225)
29 PF01381 HTH_3: Helix-turn-hel 21.6 1.5E+02 0.0033 18.9 3.4 48 147-198 1-48 (55)
30 PRK09726 antitoxin HipB; Provi 21.4 2.5E+02 0.0054 20.2 4.9 56 139-198 9-64 (88)
31 COG4800 Predicted transcriptio 21.4 2.4E+02 0.0052 23.7 5.1 54 145-203 19-72 (170)
32 PF14762 HPS3_Mid: Hermansky-P 21.3 5.6E+02 0.012 24.4 8.3 107 98-205 253-373 (374)
33 PRK10391 oriC-binding nucleoid 20.8 1.7E+02 0.0037 21.5 3.7 33 128-161 3-36 (71)
34 PF08328 ASL_C: Adenylosuccina 20.2 2.9E+02 0.0062 22.1 5.2 43 128-171 71-113 (115)
35 PF14144 DOG1: Seed dormancy c 20.1 1.1E+02 0.0025 22.4 2.8 69 98-172 3-73 (80)
No 1
>KOG2351|consensus
Probab=100.00 E-value=2.8e-40 Score=261.72 Aligned_cols=132 Identities=53% Similarity=0.875 Sum_probs=126.8
Q ss_pred CcccccccccCCCcccccccccccHHHHHHHHHHHHhhch-hhhhhhhhHHHHHHHHHHHHhcccCCChHHHHHHHHHHh
Q psy14375 74 DQVVEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNE-NAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVRNLLT 152 (206)
Q Consensus 74 ~~~~eEda~~LklG~eF~~a~~LT~sEV~~IL~~~~~~~~-~~d~~~els~v~~kTleYl~rFsk~~~~ea~e~vrelL~ 152 (206)
.+++||||++|+||++|+.+.||++|||+.||+++..+.+ +.|++.++++||.+|+.|+++|++|++++++.+||.+|.
T Consensus 2 ~g~~EEdAa~lk~g~EFe~~~~L~~sEa~lllE~~~~q~~rs~d~~~~~s~Vf~kTl~Y~~~FsRfKn~etv~avr~iLs 81 (134)
T KOG2351|consen 2 RGEEEEDAAELKLGKEFETADALMLSEARLLLEHRLEQRRRSEDDESEMSDVFKKTLQYLDRFSRFKNRETVRAVRTILS 81 (134)
T ss_pred cchhhccHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Confidence 4678999999999999999999999999999999988765 467889999999999999999999999999999999999
Q ss_pred cCCCChhhhHhhcccCCCCHHHHhhhhcccccCCCHHHHHHHHHHHHHhhhcc
Q psy14375 153 QKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKRSLQ 205 (206)
Q Consensus 153 ~~~L~kfEia~IaNL~P~t~eEaraLIPSLe~r~sdeeLe~ILd~L~k~R~fq 205 (206)
..+||+||+|+|+||||+|+||||+|||||+.+++|++|++||+.|+..|+||
T Consensus 82 ~~~lhkFE~A~lgnLcpetaEEAkaLvPSL~nkidD~~le~iL~dls~lr~fq 134 (134)
T KOG2351|consen 82 GKGLHKFEVAQLGNLCPETAEEAKALVPSLENKIDDDELEQILKDLSTLRTFQ 134 (134)
T ss_pred hCCcchhhHHHHhccCcccHHHHHHhccccccccCHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999998
No 2
>COG5250 RPB4 RNA polymerase II, fourth largest subunit [Transcription]
Probab=99.97 E-value=3.2e-31 Score=208.92 Aligned_cols=131 Identities=34% Similarity=0.580 Sum_probs=118.8
Q ss_pred cccccccccCCCcccccccccccHHHHHHHHHHHHhhchhhh--hhhhhHH--HHHHHHHHHHhcccCCChHHHHHHHHH
Q psy14375 75 QVVEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAE--EEQEFSE--VFQKTLTYTERFRKFKNRETITSVRNL 150 (206)
Q Consensus 75 ~~~eEda~~LklG~eF~~a~~LT~sEV~~IL~~~~~~~~~~d--~~~els~--v~~kTleYl~rFsk~~~~ea~e~vrel 150 (206)
+.+||||++||||++|+|...|+++|++.+++....++.++. .+-+.++ ++++|+.|++.|++|++.+++.+++.+
T Consensus 4 ~~~ee~aa~lklg~efe~ed~l~lsEAr~lie~~l~~rrretn~~e~~s~dvk~~k~T~~Yl~~F~Rfkd~e~~~a~~~~ 83 (138)
T COG5250 4 AIFEEDAAQLKLGPEFENEDMLMLSEARYLIEGQLERRRRETNGAEFRSNDVKVFKSTLGYLDDFCRFKDKEVAEALRTT 83 (138)
T ss_pred hHhhhhHHHhhcCccccchHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 467899999999999999999999999999998876654321 1233344 599999999999999999999999999
Q ss_pred HhcCCCChhhhHhhcccCCCCHHHHhhhhcccccCCCHHHHHHHHHHHHHhhhcc
Q psy14375 151 LTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKRSLQ 205 (206)
Q Consensus 151 L~~~~L~kfEia~IaNL~P~t~eEaraLIPSLe~r~sdeeLe~ILd~L~k~R~fq 205 (206)
|...|+|+||+||+++|||+++||||+|||||..+++|..++.||++++.+|+||
T Consensus 84 L~~~gfh~fEiAqlGsL~c~saeEAktLiPSL~nkidD~~lq~ilkels~l~~~~ 138 (138)
T COG5250 84 LSGLGFHEFEIAQLGSLFCQSAEEAKTLIPSLGNKIDDAILQAILKELSLLRKFQ 138 (138)
T ss_pred HccCCcchhhHHHhhccccccHHHHHhhcccccccccHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999998
No 3
>smart00657 RPOL4c DNA-directed RNA-polymerase II subunit.
Probab=99.96 E-value=6.7e-30 Score=200.87 Aligned_cols=118 Identities=51% Similarity=0.774 Sum_probs=108.5
Q ss_pred ccccccccccHHHHHHHHHHHHhhchhhhhhhhhHHHHHHHHHHHHhcccCCChHHHHHHHHHHhcCCCChhhhHhhccc
Q psy14375 88 KEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANL 167 (206)
Q Consensus 88 ~eF~~a~~LT~sEV~~IL~~~~~~~~~~d~~~els~v~~kTleYl~rFsk~~~~ea~e~vrelL~~~~L~kfEia~IaNL 167 (206)
++|.|++||||+||+.||+.++......++..+++.++++|++|+++|+++++++++..++++|..++|++||++||+||
T Consensus 1 ~~f~~a~~L~n~Ev~~ll~~k~~~~~~~~~~~~l~~v~~~tl~Yl~~~~~~~~~e~i~~~~~~L~~~~L~k~E~~~i~Nl 80 (118)
T smart00657 1 PEFKNATCLTNSEVQLLLELKRQSKESEEEQQPLSTVMKKTLKYLSKFARFKNREIVRAVRTLLKSKKLHKFEIAQLGNL 80 (118)
T ss_pred CCccchhHhHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHhCC
Confidence 48999999999999999997655433333456789999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHhhhhcccccCCCHHHHHHHHHHHHHhhhcc
Q psy14375 168 CPETPEEAKALIPSLECRFEEEELRQILDDIQTKRSLQ 205 (206)
Q Consensus 168 ~P~t~eEaraLIPSLe~r~sdeeLe~ILd~L~k~R~fq 205 (206)
||+|++||++|||+++.||+++++++||++|+++|+|+
T Consensus 81 ~P~s~~E~~~lI~sl~~r~~ee~l~~iL~~i~~~~~~~ 118 (118)
T smart00657 81 RPETAEEAQLLIPSLEERIDEEELEELLDDLSSLLPFY 118 (118)
T ss_pred CCCCHHHHHHHhhhhhccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999998999999999999999999985
No 4
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=99.96 E-value=2.3e-29 Score=196.89 Aligned_cols=112 Identities=28% Similarity=0.418 Sum_probs=105.8
Q ss_pred CCcccccccccccHHHHHHHHHHHHhhchhhhhhhhhHHHHHHHHHHHHhcccCCChHHHHHHHHHHhcCCCChhhhHhh
Q psy14375 85 QFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAI 164 (206)
Q Consensus 85 klG~eF~~a~~LT~sEV~~IL~~~~~~~~~~d~~~els~v~~kTleYl~rFsk~~~~ea~e~vrelL~~~~L~kfEia~I 164 (206)
++|++..+.+|||++||+.||+++... .++++++++|++|+++|++++++++.+++++++..++|++|++|+|
T Consensus 1 mi~k~i~~e~~lt~sEa~~iL~~~~~~-------~els~~~~ktl~y~~kFsk~~~e~a~elve~L~~~~~l~e~~a~~I 73 (112)
T PRK14981 1 MIGKKILEEEYITIAEAKEILSEIEEE-------RELSYELRRTLDYLNRFSKLDPEDAEELVEELLELEKMKEKTAVKI 73 (112)
T ss_pred CchhhhhhcccccHHHHHHHHHHHHhc-------cchhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHccCCCHHHHHHH
Confidence 578899999999999999999998764 2789999999999999999999999999999999888999999999
Q ss_pred cccCCCCHHHHhhhhcccccCCCHHHHHHHHHHHHHhhh
Q psy14375 165 ANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKRS 203 (206)
Q Consensus 165 aNL~P~t~eEaraLIPSLe~r~sdeeLe~ILd~L~k~R~ 203 (206)
+||||+|+||||+|||+++.++++++|++||++|++||.
T Consensus 74 ~nL~P~~~dElrai~~~~~~~~~~e~l~~ILd~l~k~~~ 112 (112)
T PRK14981 74 ADILPETRDELRAIFAKERYTLSPEELDEILDIVKKYRE 112 (112)
T ss_pred HhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999984
No 5
>PF03874 RNA_pol_Rpb4: RNA polymerase Rpb4; InterPro: IPR005574 The eukaryotic RNA polymerase subunits RPB4 and RPB7 form a heterodimer that reversibly associates with the RNA polymerase II core. Archaeal cells contain a single RNAP made up of about 12 subunits, displaying considerable homology to the eukaryotic RNAPII subunits. The RPB4 and RPB7 homologs are called subunits F and E, respectively, and have been shown to form a stable heterodimer. While the RPB7 homologue is reasonably well conserved, the similarity between the eukaryotic RPB4 and the archaeal F subunit is barely detectable [].; GO: 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3AYH_A 3H3V_E 4A3C_D 3PO3_D 3HOX_D 2R92_D 3HOU_D 1Y77_D 2R7Z_D 3QT1_D ....
Probab=99.92 E-value=2.7e-25 Score=172.38 Aligned_cols=108 Identities=39% Similarity=0.584 Sum_probs=94.0
Q ss_pred cccHHHHHHHHHHHHhhchh---------hhhhhhhHHHHHHHHHHHHhcccCCChHHHHHHHHHHhcCCCChhhhHhhc
Q psy14375 95 TLLISEVHMLLQHRKTQNEN---------AEEEQEFSEVFQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIA 165 (206)
Q Consensus 95 ~LT~sEV~~IL~~~~~~~~~---------~d~~~els~v~~kTleYl~rFsk~~~~ea~e~vrelL~~~~L~kfEia~Ia 165 (206)
||||+||..+|+++...... .....+++.++++|++|+++|+++.+++++..+++.|..++|+++|++||+
T Consensus 1 ~Lsn~EV~~iL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yl~~~~~~~~~e~~~~l~~~L~~~~L~~~E~~qi~ 80 (117)
T PF03874_consen 1 LLSNYEVLQILEKRREEQKNKSKKKQKNKEDPPENLNTIQYKTLEYLEKFSKFQNPESIKELREELKKFGLTEFEILQII 80 (117)
T ss_dssp EE-HHHHHHHHHHHHHHHHCHCHHHHHHHHHCSSCHCHHHHHHHHHHHHH-SSSSHHHHHHHHHHHTTSTS-HHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHHHHHccccCCCHHHHHHHHHHHhcccCCHHHHHHHh
Confidence 79999999999966554322 234577899999999999999999999999999999999999999999999
Q ss_pred ccCCCCHHHHhhhhcccccCCCHHHHHHHHHHHHHhh
Q psy14375 166 NLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKR 202 (206)
Q Consensus 166 NL~P~t~eEaraLIPSLe~r~sdeeLe~ILd~L~k~R 202 (206)
||||+|++|+++|||+++.||++++|++||++|++||
T Consensus 81 Nl~P~~~~El~~ii~~~~~r~~ee~l~~iL~~v~~~~ 117 (117)
T PF03874_consen 81 NLRPTTAVELRAIIESLESRFSEEDLEEILDLVSKYR 117 (117)
T ss_dssp HH--SSHHHHHHHSTTGTTTSTHHHHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999997
No 6
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=99.84 E-value=1.3e-20 Score=147.74 Aligned_cols=112 Identities=26% Similarity=0.410 Sum_probs=103.0
Q ss_pred CCcccccccccccHHHHHHHHHHHHhhchhhhhhhhhHHHHHHHHHHHHhcccCCChHHHHHHHHHHhcCCCChhhhHhh
Q psy14375 85 QFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAI 164 (206)
Q Consensus 85 klG~eF~~a~~LT~sEV~~IL~~~~~~~~~~d~~~els~v~~kTleYl~rFsk~~~~ea~e~vrelL~~~~L~kfEia~I 164 (206)
++|++.-+.+++|++||+.||.++. ++.++++.+++||+|+++|+++.++.+.+.+.++++..++.+.-++.|
T Consensus 2 mi~k~~le~~yiti~Eak~il~~~~-------~~~eL~y~~~~al~y~~kFakldpe~a~e~veEL~~i~~~~e~~avkI 74 (114)
T COG1460 2 MIGKKILEEKYITISEAKKILSKVE-------REEELTYEQREALEYAEKFAKLDPEKARELVEELLSIVKMSEKIAVKI 74 (114)
T ss_pred chHHHHhhccCccHHHHHHHHHHhc-------ccccchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccccHHHHHHH
Confidence 5788888899999999999999982 347789999999999999999999999999999999888766667779
Q ss_pred cccCCCCHHHHhhhhcccccCCCHHHHHHHHHHHHHhhh
Q psy14375 165 ANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKRS 203 (206)
Q Consensus 165 aNL~P~t~eEaraLIPSLe~r~sdeeLe~ILd~L~k~R~ 203 (206)
++|||+|.+|+|+|+.+.+.++++|++++|||++++||.
T Consensus 75 adI~P~t~~ElRsIla~e~~~~s~E~l~~Ildiv~Ky~~ 113 (114)
T COG1460 75 ADIMPRTPDELRSILAKERVMLSDEELDKILDIVDKYRE 113 (114)
T ss_pred HHhCCCCHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999985
No 7
>KOG4168|consensus
Probab=98.71 E-value=4.4e-08 Score=80.05 Aligned_cols=110 Identities=25% Similarity=0.346 Sum_probs=86.1
Q ss_pred ccccccHHHHHHHHHHHHhhc-----hh-hhhhh-----hhHHHHHHHHHHHHhcccCC--ChHHHHHHHHHHhcCCCCh
Q psy14375 92 NAETLLISEVHMLLQHRKTQN-----EN-AEEEQ-----EFSEVFQKTLTYTERFRKFK--NRETITSVRNLLTQKKLHK 158 (206)
Q Consensus 92 ~a~~LT~sEV~~IL~~~~~~~-----~~-~d~~~-----els~v~~kTleYl~rFsk~~--~~ea~e~vrelL~~~~L~k 158 (206)
..-+||+.||...|.+..... .+ +...+ +++.+.+.|+.|+..-..+. +++.+-.+---+..++|++
T Consensus 7 r~a~LtnyEVl~fL~el~~~n~~~~k~s~r~~~Q~~~~~~l~ti~~et~kYls~~~n~~~qt~E~i~el~~k~~~fkLtK 86 (149)
T KOG4168|consen 7 RNAALTNYEVLQFLNELECMNEEADKSSHRLGAQNILQNDLPTITYETLKYLSDNKNASTQTNESIIELITKLKSFKLTK 86 (149)
T ss_pred hHHHhhhHHHHHHHHHhhhhhhhhhhhhhhhhcccccccccchhHHHHHHHHhcCcccccccHHHHHHHHHHhccccchH
Confidence 456899999999999887211 11 11112 37899999999999876333 3444444444556689999
Q ss_pred hhhHhhcccCCCCHHHHhhhhcccccCC-CHHHHHHHHHHHHHh
Q psy14375 159 FELAAIANLCPETPEEAKALIPSLECRF-EEEELRQILDDIQTK 201 (206)
Q Consensus 159 fEia~IaNL~P~t~eEaraLIPSLe~r~-sdeeLe~ILd~L~k~ 201 (206)
.|+.+|.|+.|.+.-|+..+|...+.|| ++++|.+++..+.++
T Consensus 87 AE~LqiiN~rPss~vel~~~iE~~eeRf~~ee~i~elv~~i~~~ 130 (149)
T KOG4168|consen 87 AEILQIINLRPSSSVELYLIIEEVEERFQDEEDIEELVETISKT 130 (149)
T ss_pred HHHHHHhccCcchHHHHHHHHHHHHHhccchhcHHHHHHhcccc
Confidence 9999999999999999999999999999 999999999988765
No 8
>PF07299 FBP: Fibronectin-binding protein (FBP); InterPro: IPR010841 This entry consists of several bacterial fibronectin-binding proteins which are thought to be involved in virulence in Listeria species [,].; PDB: 4ADO_B 4ADN_B 2YB5_F.
Probab=52.13 E-value=15 Score=31.91 Aligned_cols=73 Identities=21% Similarity=0.361 Sum_probs=47.1
Q ss_pred hhHHHHHHHHHHHHhcccCCChHHHHHHHHHHhcCCCChhhhHhhcccCCCCHHHHhhhhcccccCCCHHHHHHHHHHHH
Q psy14375 120 EFSEVFQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQ 199 (206)
Q Consensus 120 els~v~~kTleYl~rFsk~~~~ea~e~vrelL~~~~L~kfEia~IaNL~P~t~eEaraLIPSLe~r~sdeeLe~ILd~L~ 199 (206)
+.+.+-+++..=++.+....++..+++++.+.. ..|.++.|.-.+|.+.|+..+...-+.++.+..|+.|.
T Consensus 6 qyn~Ik~q~~~L~~~~~tvnD~~vi~a~~~~~~---------~ki~~~f~~~~~eq~~ll~~i~~i~~~~~~~~~L~~L~ 76 (208)
T PF07299_consen 6 QYNFIKKQVYQLVNAYRTVNDPKVIEAVKSLAI---------EKILELFPELTEEQKELLEQIMDIKTREEAEKYLEELK 76 (208)
T ss_dssp HHHHHHHHHHHHHHHHHC-T-CCCCHHHHHHHH---------HHHHHHHCTTTHHHCCHHHHHTSTT-HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHH---------HHHHHHcccCCHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 445666667777777777777777777776543 23666777777777777776644336777777777777
Q ss_pred Hh
Q psy14375 200 TK 201 (206)
Q Consensus 200 k~ 201 (206)
.|
T Consensus 77 ~y 78 (208)
T PF07299_consen 77 PY 78 (208)
T ss_dssp CC
T ss_pred HH
Confidence 66
No 9
>PF06569 DUF1128: Protein of unknown function (DUF1128); InterPro: IPR009507 This family consists of several short, hypothetical bacterial proteins of unknown function.
Probab=45.70 E-value=34 Score=25.16 Aligned_cols=37 Identities=19% Similarity=0.337 Sum_probs=27.7
Q ss_pred cCCCCHHHHhhhhccc--ccCCCHHHHHHHHHHHHHhhh
Q psy14375 167 LCPETPEEAKALIPSL--ECRFEEEELRQILDDIQTKRS 203 (206)
Q Consensus 167 L~P~t~eEaraLIPSL--e~r~sdeeLe~ILd~L~k~R~ 203 (206)
+-....|+++-|+.-. +..|+..+++.|.+.|-++|+
T Consensus 33 f~~~~yedl~diy~~V~~K~~fS~sEm~aI~~ELG~LRK 71 (71)
T PF06569_consen 33 FSEEKYEDLKDIYEMVMSKDSFSPSEMQAIAEELGQLRK 71 (71)
T ss_pred CChhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcC
Confidence 4445566666665443 357999999999999999996
No 10
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=41.25 E-value=78 Score=24.44 Aligned_cols=78 Identities=12% Similarity=0.154 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHh-cccCCChHHHHHHHHHHhcCCCChhhhHhhccc------CCCCHHHHhhhhcccccC-CCHHHHHH
Q psy14375 122 SEVFQKTLTYTER-FRKFKNRETITSVRNLLTQKKLHKFELAAIANL------CPETPEEAKALIPSLECR-FEEEELRQ 193 (206)
Q Consensus 122 s~v~~kTleYl~r-Fsk~~~~ea~e~vrelL~~~~L~kfEia~IaNL------~P~t~eEaraLIPSLe~r-~sdeeLe~ 193 (206)
+..+.+.+++++. |..-=+..----+..+|.+ .|++.|+.+++.- .|.|.++++..|-..-.. -++++|+.
T Consensus 2 ~~~l~~iv~WLRaGYP~GvP~~Dy~PLlALL~r-~Ltd~ev~~Va~~L~~~~~~~~~~~dI~~~I~~vt~~~P~~~di~R 80 (96)
T PF11829_consen 2 PSFLASIVDWLRAGYPEGVPPTDYVPLLALLRR-RLTDDEVAEVAAELAARGDPPVDRIDIGVAITRVTDELPTPEDIER 80 (96)
T ss_dssp HHHHHHHHHHHHHH-TT-B-HHHHHHHHHHHTT-TS-HHHHHHHHHHHHHHTSS-BSCCHHHHHHHHHCSS-S-HHHHHH
T ss_pred ChHHHHHHHHHHccCCCCCCCCccHHHHHHhcc-cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCcCHHHHHH
Confidence 4456666666665 3333233334455566665 4888887665433 255888899888877544 47899999
Q ss_pred HHHHHHH
Q psy14375 194 ILDDIQT 200 (206)
Q Consensus 194 ILd~L~k 200 (206)
+..-|..
T Consensus 81 V~~~Laa 87 (96)
T PF11829_consen 81 VRARLAA 87 (96)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 8887764
No 11
>PF00570 HRDC: HRDC domain Bloom syndrome. Werner syndrome.; InterPro: IPR002121 The HRDC (Helicase and RNase D C-terminal) domain has a putative role in nucleic acid binding. Mutations in the HRDC domain associated with the human BLM gene result in Bloom Syndrome (BS), an autosomal recessive disorder characterised by proportionate pre- and postnatal growth deficiency; sun-sensitive, telangiectatic, hypo- and hyperpigmented skin; predisposition to malignancy; and chromosomal instability [].; GO: 0003676 nucleic acid binding, 0005622 intracellular; PDB: 3SAG_B 3SAH_B 2CPR_A 3SAF_B 3CYM_A 1WUD_A 2HBK_A 2HBJ_A 2HBM_A 2HBL_A ....
Probab=40.30 E-value=13 Score=25.27 Aligned_cols=23 Identities=30% Similarity=0.286 Sum_probs=17.5
Q ss_pred CChhhhHhhcccCCCCHHHHhhh
Q psy14375 156 LHKFELAAIANLCPETPEEAKAL 178 (206)
Q Consensus 156 L~kfEia~IaNL~P~t~eEaraL 178 (206)
+++..+..|+...|.|.+|+..+
T Consensus 27 l~~~~L~~ia~~~P~s~~~L~~i 49 (68)
T PF00570_consen 27 LSDEALLEIAKRLPTSIEELLQI 49 (68)
T ss_dssp S-HHHHHHHHHH--SSHHHHHTS
T ss_pred cCHHHHHHHHHhCCCCHHHHHHc
Confidence 56677788999999999999998
No 12
>PF11459 DUF2893: Protein of unknwon function (DUF2893); InterPro: IPR021561 This is a bacterial family of uncharacterised proteins.
Probab=40.24 E-value=30 Score=25.23 Aligned_cols=37 Identities=22% Similarity=0.355 Sum_probs=30.4
Q ss_pred hcccCCCC--HHHHhhhhcccccCCCHHHHHHHHHHHHHh
Q psy14375 164 IANLCPET--PEEAKALIPSLECRFEEEELRQILDDIQTK 201 (206)
Q Consensus 164 IaNL~P~t--~eEaraLIPSLe~r~sdeeLe~ILd~L~k~ 201 (206)
+.+..|+. .+||+.|+.++ ..+.+.-|+++|+...++
T Consensus 10 ~l~~~p~~~s~e~a~~l~egL-~nLrp~~lq~LL~~C~sv 48 (69)
T PF11459_consen 10 LLSEVPKRQSFEEADELMEGL-RNLRPRVLQELLEHCTSV 48 (69)
T ss_pred HHHhCCccCCHHHHHHHHHHH-hhcCHHHHHHHHHHCccH
Confidence 66677765 68999999999 688999999999876654
No 13
>PHA00542 putative Cro-like protein
Probab=38.09 E-value=74 Score=23.09 Aligned_cols=57 Identities=7% Similarity=-0.052 Sum_probs=42.2
Q ss_pred HHHHHHhcCCCChhhhHhhcccCCCCHHHHhhhhcccccCCCHHHHHHHHHHHHHhhhcc
Q psy14375 146 SVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKRSLQ 205 (206)
Q Consensus 146 ~vrelL~~~~L~kfEia~IaNL~P~t~eEaraLIPSLe~r~sdeeLe~ILd~L~k~R~fq 205 (206)
.+...+...|++..++|....+-+.++-....-- ....+.+.+++|++.+.++..||
T Consensus 22 ~l~~~l~~~glTq~elA~~lgIs~~tIsr~e~g~---~~~p~~~~l~ki~~~~~~~~~~~ 78 (82)
T PHA00542 22 ELVCALIRAGWSQEQIADATDVSQPTICRIYSGR---HKDPRYSVVEKLRHLVLNLDDFQ 78 (82)
T ss_pred HHHHHHHHCCCCHHHHHHHHCcCHHHHHHHHcCC---CCCCCHHHHHHHHHHHHHhchhh
Confidence 4455666679999999999999877766543211 12467889999999999888776
No 14
>PF08535 KorB: KorB domain; InterPro: IPR013741 This entry contains several KorB transcriptional repressor proteins. The korB gene is a major regulatory element in the replication and maintenance of broad host-range plasmid RK2. It negatively controls the replication gene trfA, the host-lethal determinants kilA and kilB, and the korA-korB operon []. This domain includes the DNA-binding HTH motif []. ; PDB: 1R71_C.
Probab=36.21 E-value=57 Score=23.96 Aligned_cols=81 Identities=14% Similarity=0.319 Sum_probs=49.4
Q ss_pred hhhHHHHHHHHHHHHhcccCCChHHHHHHHHHHhcCCCChhhhH-hhcccCCCCHHHHhhhhcc-cccCCCHHHHHHHHH
Q psy14375 119 QEFSEVFQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELA-AIANLCPETPEEAKALIPS-LECRFEEEELRQILD 196 (206)
Q Consensus 119 ~els~v~~kTleYl~rFsk~~~~ea~e~vrelL~~~~L~kfEia-~IaNL~P~t~eEaraLIPS-Le~r~sdeeLe~ILd 196 (206)
.++...+.++-.|+.++-++-+ .-..|++++....+.....+ .|..+.-...++++.+|.. ....++...++.+.+
T Consensus 7 ~eIA~~lGks~s~Vs~~l~Ll~--lP~~i~~~v~~g~~~~~~a~~~L~~~~~~~~~~~~~~v~~~~~~~~t~~~~~~~~~ 84 (93)
T PF08535_consen 7 EEIAKRLGKSRSWVSNHLALLD--LPEEIKELVRSGRISDIRALYELRKLAEKNPEEVEALVAKAKEEGLTRAAVKALRR 84 (93)
T ss_dssp HHHHHHTT--HHHHHHHHGGGS----HHHHHHHHTTS---HHHHHHHHHHHHH-HHHHHHHH-HSTTS--SHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHc--CCHHHHHHHHcCCCchHHHHHHHHHHHHhCHHHHHHHHHHhccccccHHHHHHHHH
Confidence 3456677888889998887753 23457777776666655543 4777777889999999922 224688888988888
Q ss_pred HHHHh
Q psy14375 197 DIQTK 201 (206)
Q Consensus 197 ~L~k~ 201 (206)
.|..-
T Consensus 85 ~l~~~ 89 (93)
T PF08535_consen 85 ELKEK 89 (93)
T ss_dssp HHH--
T ss_pred HHHHh
Confidence 87653
No 15
>smart00341 HRDC Helicase and RNase D C-terminal. Hypothetical role in nucleic acid binding. Mutations in the HRDC domain cause human disease.
Probab=31.93 E-value=54 Score=22.81 Aligned_cols=48 Identities=21% Similarity=0.085 Sum_probs=32.9
Q ss_pred CCChhhhHhhcccCCCCHHHHhhhhcccccCCCHHHHHHHHHHHHHhhh
Q psy14375 155 KLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKRS 203 (206)
Q Consensus 155 ~L~kfEia~IaNL~P~t~eEaraLIPSLe~r~sdeeLe~ILd~L~k~R~ 203 (206)
-|++..+..|+...|.|.+++..+----...+ ...-+.+++.|..++.
T Consensus 29 I~~~~~L~~ia~~~P~~~~~L~~i~g~~~~~~-~~~g~~~~~~i~~~~~ 76 (81)
T smart00341 29 VLPDETLIKMAAALPTNVSELLAIDGVGEEKA-RRYGKDLLAVIQEASD 76 (81)
T ss_pred EECHHHHHHHHHHCCCCHHHHhcCCCCCHHHH-HHHHHHHHHHHHHHHh
Confidence 45677788899999999999888543222222 4445677788877654
No 16
>PF07985 SRR1: SRR1; InterPro: IPR012942 Sensitivity To Red Light Reduced proteins (SRR1) are signalling proteins thought to be involved in regulating the circadian clock input pathway, which is required for normal oscillator function. In Arabidopsis thaliana it regulates the expression of clock-regulated genes such as CCA1 and TOC1. It is also involved in both the phytochrome B (PHYB) and PHYB-independent signaling pathways [].
Probab=31.69 E-value=14 Score=25.30 Aligned_cols=10 Identities=60% Similarity=1.192 Sum_probs=6.2
Q ss_pred CccccCCCcc
Q psy14375 1 MVCLGLGQNK 10 (206)
Q Consensus 1 ~~~~~~~~~~ 10 (206)
+||+|||.=.
T Consensus 2 ivclGLGsf~ 11 (56)
T PF07985_consen 2 IVCLGLGSFS 11 (56)
T ss_pred EEEEEecCcc
Confidence 4677777544
No 17
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=30.93 E-value=51 Score=21.12 Aligned_cols=29 Identities=24% Similarity=0.468 Sum_probs=19.5
Q ss_pred CHHHHhhhhcccccC-CCHHHHHHHHHHHH
Q psy14375 171 TPEEAKALIPSLECR-FEEEELRQILDDIQ 199 (206)
Q Consensus 171 t~eEaraLIPSLe~r-~sdeeLe~ILd~L~ 199 (206)
|.+|.+.++..+... +++++++.|+..+.
T Consensus 6 ~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D 35 (54)
T PF13833_consen 6 TREEFRRALSKLGIKDLSEEEVDRLFREFD 35 (54)
T ss_dssp EHHHHHHHHHHTTSSSSCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhCCCCCCHHHHHHHHHhcc
Confidence 456677777555556 77777777777654
No 18
>KOG4204|consensus
Probab=28.26 E-value=4.1e+02 Score=23.31 Aligned_cols=102 Identities=16% Similarity=0.295 Sum_probs=66.4
Q ss_pred ccHHHHHHHHHHHHhhchhhhhhhhhHHHHHHHHHHHHhcc--cCCChHHHHHHHHHHhcC-----CCC-----hhhhHh
Q psy14375 96 LLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFR--KFKNRETITSVRNLLTQK-----KLH-----KFELAA 163 (206)
Q Consensus 96 LT~sEV~~IL~~~~~~~~~~d~~~els~v~~kTleYl~rFs--k~~~~ea~e~vrelL~~~-----~L~-----kfEia~ 163 (206)
+|...|..-|..++..... -.+.+..-++=++.|. +++.+..+..|.+|++.+ |+. .+.+..
T Consensus 17 ~t~~DAlsYl~~VK~~f~d------~p~kY~~FL~im~d~ka~~iD~~~vi~rv~eLfK~h~~Ll~gfN~fLP~~~~i~~ 90 (231)
T KOG4204|consen 17 LTLDDALAYLKAVKEAFQD------EPEKYDEFLEIMKDFKAQRIDTPGVIARVKELLKGHPDLLLGFNTFLPPGYKITL 90 (231)
T ss_pred CChHHHHHHHHHHHHHHhc------ChHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHccCHHHHHHHHhhCcccceecc
Confidence 8899999999999875432 1345566666666665 678899999999999742 111 011110
Q ss_pred hc----------------------------ccCCCCHHHHhhhhcccccCCC--HHHHHHHHHHHHHhhh
Q psy14375 164 IA----------------------------NLCPETPEEAKALIPSLECRFE--EEELRQILDDIQTKRS 203 (206)
Q Consensus 164 Ia----------------------------NL~P~t~eEaraLIPSLe~r~s--deeLe~ILd~L~k~R~ 203 (206)
.. .+-+-+.++|..++-.++.+|. ++..+..|++|..|++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~fv~klk~rf~~~~~v~~s~l~il~~y~~ 160 (231)
T KOG4204|consen 91 SSEAKDEFTIYGATSYLPSPKVAFHEEILKLLEDVEFDRAISFVNKLKTRFQGDDHVYKSFLEILRMYQE 160 (231)
T ss_pred CcccccccccccccccCCCccccccchhhhhcccchHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 00 0000345678888888877763 4788999999988865
No 19
>PF12875 DUF3826: Protein of unknown function (DUF3826); InterPro: IPR024284 This is a putative sugar-binding family.; PDB: 3KDW_A 3G6I_A.
Probab=27.89 E-value=64 Score=27.88 Aligned_cols=61 Identities=30% Similarity=0.439 Sum_probs=39.2
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHhcCCCChhhhHhhcccCCCCHHHHhhhhcccccCCCHHHHHHHHHHHHHhhhc
Q psy14375 128 TLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKRSL 204 (206)
Q Consensus 128 TleYl~rFsk~~~~ea~e~vrelL~~~~L~kfEia~IaNL~P~t~eEaraLIPSLe~r~sdeeLe~ILd~L~k~R~f 204 (206)
=.+|+...+++-+++-++.|...+. .+.+|-|..--..+||+| ++++=..|+.-|..-|.|
T Consensus 83 H~~~~~~L~~~Lt~~Qie~vkd~mT------------yg~v~~T~k~y~~mvP~L----teeek~~I~~~L~eARE~ 143 (188)
T PF12875_consen 83 HFDYMAKLSKYLTEEQIEQVKDGMT------------YGVVPFTYKGYLDMVPSL----TEEEKAQILTWLKEAREF 143 (188)
T ss_dssp HTHHHHHHTTT--HHHHHHHHHHCT------------TTHHHHHHHHHHHH-TT------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHcccc------------ceehhhhHHHHHHHcCcc----cHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666655432 344566777778899988 688888999998888876
No 20
>KOG4479|consensus
Probab=27.26 E-value=87 Score=23.89 Aligned_cols=54 Identities=22% Similarity=0.441 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHhcCCCChhhhHh-hcccCCCCHHHHhhhhcccccCCCHHHHHHHHHHHHHh
Q psy14375 141 RETITSVRNLLTQKKLHKFELAA-IANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTK 201 (206)
Q Consensus 141 ~ea~e~vrelL~~~~L~kfEia~-IaNL~P~t~eEaraLIPSLe~r~sdeeLe~ILd~L~k~ 201 (206)
.+.....|+.++..|+..+..-| ++-+.|+ ||+|+|.. .-.|-|..|=..|+++
T Consensus 35 d~ik~mcrniimEkG~~n~tvdqL~AeitPk----aRaLVPd~---VKkEll~rirt~L~~~ 89 (92)
T KOG4479|consen 35 DDIKEMCRNIIMEKGVDNITVDQLAAEITPK----ARALVPDV---VKKELLLRIRTALDKH 89 (92)
T ss_pred HHHHHHHHHHHHHhccccccHHHHHHHhCch----hhhhchHH---HHHHHHHHHHHHHHHH
Confidence 45567788888888888888777 6777775 78999876 3356666666666554
No 21
>TIGR01878 cas_Csa5 CRISPR-associated protein, Csa5 family. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor family of Cas protein found in the (all archaeal) APERN subtype of CRISPR/Cas locus, so the family is designated Csa5, for CRISPR/Cas Subtype Protein 5.
Probab=25.52 E-value=57 Score=25.34 Aligned_cols=68 Identities=16% Similarity=0.286 Sum_probs=37.4
Q ss_pred HHHHHHHHHhccc-CCChHHHHHHHHHHhcCCCChhhhHhhcccCCCC----H--HHHhhhhcccccCCCHHHHHHHHHH
Q psy14375 125 FQKTLTYTERFRK-FKNRETITSVRNLLTQKKLHKFELAAIANLCPET----P--EEAKALIPSLECRFEEEELRQILDD 197 (206)
Q Consensus 125 ~~kTleYl~rFsk-~~~~ea~e~vrelL~~~~L~kfEia~IaNL~P~t----~--eEaraLIPSLe~r~sdeeLe~ILd~ 197 (206)
..+++-||.||.. +..+.....+.+++..+.. +.-.+++.-+. . -.++.++|++ .++++++.++..
T Consensus 4 ~~es~tyvDr~gnals~e~v~~aL~ea~R~~~s----~~~~a~~~~~gk~~~~kegk~~~~~~~l---ptdeeVe~f~r~ 76 (97)
T TIGR01878 4 YSESPTYVDRFGNALSKEAVEVALYEAQRILRS----IREGADIDIEGKRYMEKEGKNRILVGYL---PTDKEVEDFLRD 76 (97)
T ss_pred ccCCchHHHHHHhhcCHHHHHHHHHHHHHHHHH----HHhhhhHHHHhHHHhhhcCcceeecCCC---CcHHHHHHHHHH
Confidence 3467889999994 4545544556666553211 00022222111 1 1334666755 589999999986
Q ss_pred HH
Q psy14375 198 IQ 199 (206)
Q Consensus 198 L~ 199 (206)
+.
T Consensus 77 ~~ 78 (97)
T TIGR01878 77 VR 78 (97)
T ss_pred hH
Confidence 54
No 22
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=25.18 E-value=88 Score=23.00 Aligned_cols=30 Identities=17% Similarity=0.213 Sum_probs=14.8
Q ss_pred CHHHHhhhhcccc----cCCCHHHHHHHHHHHHH
Q psy14375 171 TPEEAKALIPSLE----CRFEEEELRQILDDIQT 200 (206)
Q Consensus 171 t~eEaraLIPSLe----~r~sdeeLe~ILd~L~k 200 (206)
+.+|+..++..+. .+++-++.-.++.-|+.
T Consensus 49 t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~~ 82 (88)
T cd05029 49 QDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALAL 82 (88)
T ss_pred CHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHH
Confidence 4556666665443 24554554444444443
No 23
>PF10975 DUF2802: Protein of unknown function (DUF2802); InterPro: IPR021244 This bacterial family of proteins has no known function.
Probab=24.38 E-value=2.1e+02 Score=20.48 Aligned_cols=36 Identities=14% Similarity=0.269 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhcccCCChHHHHHHHHHHhcCCCChhhhHhhccc
Q psy14375 123 EVFQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANL 167 (206)
Q Consensus 123 ~v~~kTleYl~rFsk~~~~ea~e~vrelL~~~~L~kfEia~IaNL 167 (206)
..+.++...+..-+. +.++...+||++.|+-.|.+|
T Consensus 32 ~~Y~~A~klv~~Ga~---------~~el~~~CgL~~aEAeLl~~L 67 (70)
T PF10975_consen 32 PLYSQAIKLVRQGAS---------VEELMEECGLSRAEAELLLSL 67 (70)
T ss_pred chHHHHHHHHHcCCC---------HHHHHHHcCCCHHHHHHHHHH
Confidence 345555555544322 346667789999998777655
No 24
>TIGR02498 type_III_ssaH type III secretion system protein, SsaH family. This family describes a small protein, always smaller than 100 amino acids, encoded in pathogenicity islands for bacterial type III secretion systems in various strains of Yersinia, Salmonella, and enteropathogenic E. coli, as well as Chromobacterium violaceum and Citrobacter rodentium. Although strictly associated with type III secretion systems, this protein seems not yet to have been characterized as part of the apparatus or as an effector protein.
Probab=23.85 E-value=1.9e+02 Score=21.73 Aligned_cols=56 Identities=11% Similarity=0.067 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhcccCCChHHHHHHHHHHhcCCCChhhhHh--hcccCCCCHHHHhhhh
Q psy14375 124 VFQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAA--IANLCPETPEEAKALI 179 (206)
Q Consensus 124 v~~kTleYl~rFsk~~~~ea~e~vrelL~~~~L~kfEia~--IaNL~P~t~eEaraLI 179 (206)
....+..-++-|..+-+.....++-+.+-.+||.+.+.|. |.+..++++.-+|.|+
T Consensus 21 L~~ea~ailnalP~li~D~~~r~vcea~llfGL~~~~~A~~~L~~~~~~eA~~Lr~l~ 78 (79)
T TIGR02498 21 LPKEAHSILNALPQIIPDKKDRLVCEAILLFGLNHKNDAVKLLENMDDEEAQLLRSLV 78 (79)
T ss_pred cHHHHHHHHHhcccccCCHhHHHHHHHHHHHhcCcHHHHHHHHhcCCcHHHHHHHHHh
Confidence 5677888889999876555567777777779998888654 8887777777777765
No 25
>PHA02922 hypothetical protein; Provisional
Probab=22.19 E-value=2.6e+02 Score=23.35 Aligned_cols=78 Identities=21% Similarity=0.365 Sum_probs=46.9
Q ss_pred HHHHHHHH-HHHHhcccCCChHHHHHHHHHHhcCCC-ChhhhHhhcccCCCCHH---------HHhhhhcccccCCCHHH
Q psy14375 122 SEVFQKTL-TYTERFRKFKNRETITSVRNLLTQKKL-HKFELAAIANLCPETPE---------EAKALIPSLECRFEEEE 190 (206)
Q Consensus 122 s~v~~kTl-eYl~rFsk~~~~ea~e~vrelL~~~~L-~kfEia~IaNL~P~t~e---------EaraLIPSLe~r~sdee 190 (206)
..+|..-+ ..++.|+...-+.+++.|+-.+....+ +-.|++.|+.||-.-++ =++.|. -+..-++|.+
T Consensus 62 e~VFg~nlr~fVk~~s~~gv~~s~~~I~c~l~~dn~ktirEa~AiIGLcA~aAeYWGgePt~~S~~vL~-Ll~~LLsd~D 140 (153)
T PHA02922 62 TELFGSELKEFSDSLPWDNIDNCVEIIKCFIRNDSMKTAKELRAIIGLCTQSAIVSGRVFNDKYIDILL-MLRKILNEND 140 (153)
T ss_pred HHHHHHHHHHHHHhCchhhhHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHH-HHHHHhchhH
Confidence 35666443 445556766667778888888776555 34567778777744321 222221 1222378888
Q ss_pred HHHHHHHHHH
Q psy14375 191 LRQILDDIQT 200 (206)
Q Consensus 191 Le~ILd~L~k 200 (206)
+-.+||.|+.
T Consensus 141 ~~~~~~~~~~ 150 (153)
T PHA02922 141 YLTLLDHIRT 150 (153)
T ss_pred HHHHHHHHHh
Confidence 8888887764
No 26
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=22.19 E-value=2.4e+02 Score=24.16 Aligned_cols=63 Identities=13% Similarity=0.132 Sum_probs=39.4
Q ss_pred cccCCChHHHHHHHHHHhcCC--CChhhhHhhcccCCCCHHHHhhhhcccc-----cCCCHHHHHHHHHH
Q psy14375 135 FRKFKNRETITSVRNLLTQKK--LHKFELAAIANLCPETPEEAKALIPSLE-----CRFEEEELRQILDD 197 (206)
Q Consensus 135 Fsk~~~~ea~e~vrelL~~~~--L~kfEia~IaNL~P~t~eEaraLIPSLe-----~r~sdeeLe~ILd~ 197 (206)
|.+.+..+....|++.+...| +++..+..|++.++.+...++..+.+|. ..++.+++++++..
T Consensus 108 ~~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~l~~~~~~d~~~l~~el~KL~~~~~~~~It~e~I~~~~~~ 177 (302)
T TIGR01128 108 CKTPKEQELPRWIQARLKKLGLRIDPDAVQLLAELVEGNLLAIAQELEKLALYAPDGKITLEDVEEAVSD 177 (302)
T ss_pred ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHhh
Confidence 444445555566777666654 4455555588888888877766655542 34777777766653
No 27
>PRK10945 gene expression modulator; Provisional
Probab=22.15 E-value=1.7e+02 Score=21.62 Aligned_cols=34 Identities=24% Similarity=0.270 Sum_probs=26.6
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHhcCCCChhhh
Q psy14375 127 KTLTYTERFRKFKNRETITSVRNLLTQKKLHKFEL 161 (206)
Q Consensus 127 kTleYl~rFsk~~~~ea~e~vrelL~~~~L~kfEi 161 (206)
...+||=+|-++.+.++.+.|-+-+. ..|+..|+
T Consensus 7 tk~dyL~~fRrcss~eTLEkvie~~~-~~L~~~E~ 40 (72)
T PRK10945 7 TKTDYLMRLRRCQTIDTLERVIEKNK-YELSDDEL 40 (72)
T ss_pred cHHHHHHHHHhcCcHHHHHHHHHHhh-ccCCHHHH
Confidence 34899999999999999888877654 45666554
No 28
>PF06207 DUF1002: Protein of unknown function (DUF1002); InterPro: IPR009343 This protein family has no known function. Its members are about 300 amino acids in length. It has so far been detected in Firmicute bacteria and some archaebacteria.
Probab=21.67 E-value=1.1e+02 Score=26.92 Aligned_cols=43 Identities=21% Similarity=0.433 Sum_probs=34.8
Q ss_pred hhcccCCCCHHHHhhhhcccc----cCCCHHHHHHHHHHHHHhhhcc
Q psy14375 163 AIANLCPETPEEAKALIPSLE----CRFEEEELRQILDDIQTKRSLQ 205 (206)
Q Consensus 163 ~IaNL~P~t~eEaraLIPSLe----~r~sdeeLe~ILd~L~k~R~fq 205 (206)
+|+.-.|.|.+|++.+|-..- -.+++++++.|.+++.++...+
T Consensus 165 ~va~~~~~t~~eI~~IV~~~~~~~~i~ls~~q~~~i~~l~~~~~~~~ 211 (225)
T PF06207_consen 165 EVAKQKPKTDEEIRNIVNNVLNNYNINLSDEQIQQIVNLMKKIQNLN 211 (225)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHcCC
Confidence 477788889999999985543 2489999999999999987643
No 29
>PF01381 HTH_3: Helix-turn-helix; InterPro: IPR001387 This is large family of DNA binding helix-turn helix proteins that include a bacterial plasmid copy control protein, bacterial methylases, various bacteriophage transcription control proteins and a vegetative specific protein from Dictyostelium discoideum (Slime mould).; GO: 0043565 sequence-specific DNA binding; PDB: 2AXU_A 2AWI_D 2AXV_D 2AXZ_C 2AW6_A 3KXA_C 3BS3_A 2CRO_A 1ZUG_A 3CRO_R ....
Probab=21.55 E-value=1.5e+02 Score=18.85 Aligned_cols=48 Identities=19% Similarity=0.235 Sum_probs=28.6
Q ss_pred HHHHHhcCCCChhhhHhhcccCCCCHHHHhhhhcccccCCCHHHHHHHHHHH
Q psy14375 147 VRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDI 198 (206)
Q Consensus 147 vrelL~~~~L~kfEia~IaNL~P~t~eEaraLIPSLe~r~sdeeLe~ILd~L 198 (206)
+++++...|++..+.|..+++-|.++...- -. +..++.+.+..|.+.+
T Consensus 1 ik~~r~~~gls~~~la~~~gis~~~i~~~~---~g-~~~~~~~~~~~ia~~l 48 (55)
T PF01381_consen 1 IKELRKEKGLSQKELAEKLGISRSTISRIE---NG-KRNPSLDTLKKIAKAL 48 (55)
T ss_dssp HHHHHHHTTS-HHHHHHHHTS-HHHHHHHH---TT-SSTSBHHHHHHHHHHH
T ss_pred CHHHHHHcCCCHHHHHHHhCCCcchhHHHh---cC-CCCCCHHHHHHHHHHH
Confidence 345556678888888888887666654332 22 3446666666666554
No 30
>PRK09726 antitoxin HipB; Provisional
Probab=21.36 E-value=2.5e+02 Score=20.25 Aligned_cols=56 Identities=13% Similarity=0.076 Sum_probs=36.1
Q ss_pred CChHHHHHHHHHHhcCCCChhhhHhhcccCCCCHHHHhhhhcccccCCCHHHHHHHHHHH
Q psy14375 139 KNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDI 198 (206)
Q Consensus 139 ~~~ea~e~vrelL~~~~L~kfEia~IaNL~P~t~eEaraLIPSLe~r~sdeeLe~ILd~L 198 (206)
+...-...++++....|++..+.|..+++-+.++-.... . ....+-+.|..|++.+
T Consensus 9 ~~~~l~~~lk~~R~~~gltq~elA~~~gvs~~tis~~e~---g-~~~ps~~~l~~ia~~l 64 (88)
T PRK09726 9 SPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFEN---N-PDNTTLTTFFKILQSL 64 (88)
T ss_pred CHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHC---C-CCCCCHHHHHHHHHHc
Confidence 333445667777777899999999988888777654332 1 1235566666666554
No 31
>COG4800 Predicted transcriptional regulator with an HTH domain [Transcription]
Probab=21.35 E-value=2.4e+02 Score=23.69 Aligned_cols=54 Identities=20% Similarity=0.220 Sum_probs=37.2
Q ss_pred HHHHHHHhcCCCChhhhHhhcccCCCCHHHHhhhhcccccCCCHHHHHHHHHHHHHhhh
Q psy14375 145 TSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKRS 203 (206)
Q Consensus 145 e~vrelL~~~~L~kfEia~IaNL~P~t~eEaraLIPSLe~r~sdeeLe~ILd~L~k~R~ 203 (206)
+-+..+|...|||..|-+..+|+-|.|.- -++-.- .+--+.|.+|+..|++|.+
T Consensus 19 ~~l~~~l~Elglt~~eFak~anIP~StLY---Kil~G~--dpr~~tl~~I~ktir~~ek 72 (170)
T COG4800 19 SCLQKLLDELGLTPSEFAKRANIPLSTLY---KILKGS--DPRYDTLTRIFKTIRSYEK 72 (170)
T ss_pred HHHHHHHHHcCCCHHHHHHHcCCCHHHHH---HHHhCC--CccHHHHHHHHHHHHHHHh
Confidence 34445566679999999999999987643 233332 3445778888888877754
No 32
>PF14762 HPS3_Mid: Hermansky-Pudlak syndrome 3, middle region
Probab=21.33 E-value=5.6e+02 Score=24.36 Aligned_cols=107 Identities=21% Similarity=0.276 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHhh--chhhhhhhhhHHHHHHHHHHHHh-cccCCChHHHHHHHHHHhcCCCChhhhHhhcccCCCCHHH
Q psy14375 98 ISEVHMLLQHRKTQ--NENAEEEQEFSEVFQKTLTYTER-FRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEE 174 (206)
Q Consensus 98 ~sEV~~IL~~~~~~--~~~~d~~~els~v~~kTleYl~r-Fsk~~~~ea~e~vrelL~~~~L~kfEia~IaNL~P~t~eE 174 (206)
++|+..||+...-+ ....+...++...|+.+=.|+.. |++....+. ..---..+..|+.-.++..-+++.-.+..+
T Consensus 253 L~EaHlLLRsaL~~~~~~~~~~~~eL~~l~reSca~LGD~~~r~~~~d~-~lA~pYYkMS~l~i~~Vl~ri~~~~~~~~~ 331 (374)
T PF14762_consen 253 LSEAHLLLRSALLDPSQEESEEKNELRELFRESCALLGDCYSRSDEKDY-HLAAPYYKMSGLSISEVLNRIKLVKSDVSQ 331 (374)
T ss_pred HHHHHHHHHHHhhhhhhcccchHHHHHHHHHHHHHHHHhHhhccchHHH-HHHHHHHHhcCCCHHHHHHHhhhccccccc
Confidence 68999998877621 12233446788899999999988 556664443 333344455678777776654444222111
Q ss_pred ---Hhhhhccc--------ccCCCHHHHHHHHHHHHHhhhcc
Q psy14375 175 ---AKALIPSL--------ECRFEEEELRQILDDIQTKRSLQ 205 (206)
Q Consensus 175 ---araLIPSL--------e~r~sdeeLe~ILd~L~k~R~fq 205 (206)
.+.||--+ ....+++-.++||++.....+-|
T Consensus 332 ~~~~~GLi~yLk~~L~~~~~~~lseela~~il~i~~~~eP~~ 373 (374)
T PF14762_consen 332 SYDGRGLIFYLKHVLYEEESEELSEELANKILQIFSQAEPHQ 373 (374)
T ss_pred ccccchHHHHHHHHhccccchhhhHHHHHHHHHHHHhcCccc
Confidence 33444333 23456778888998887765543
No 33
>PRK10391 oriC-binding nucleoid-associated protein; Provisional
Probab=20.76 E-value=1.7e+02 Score=21.55 Aligned_cols=33 Identities=24% Similarity=0.373 Sum_probs=25.3
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHhcCCCCh-hhh
Q psy14375 128 TLTYTERFRKFKNRETITSVRNLLTQKKLHK-FEL 161 (206)
Q Consensus 128 TleYl~rFsk~~~~ea~e~vrelL~~~~L~k-fEi 161 (206)
..+|+=+|-++++.++.+.|-+-+. ..|+. .|+
T Consensus 3 k~eyLlkfRkcss~eTLEkv~e~~~-y~L~~~~e~ 36 (71)
T PRK10391 3 VQDYLLKFRKISSLESLEKLFDHLN-YTLTDDQEI 36 (71)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhh-cccCCHHHH
Confidence 5789999999999999888877765 45654 444
No 34
>PF08328 ASL_C: Adenylosuccinate lyase C-terminal; InterPro: IPR013539 This domain is found at the C terminus of adenylosuccinate lyase(ASL; PurB in Escherichia coli). It has been identified in bacteria, eukaryotes and archaea and is found together with the lyase domain IPR000362 from INTERPRO. ASL catalyses the cleavage of succinylaminoimidazole carboxamide ribotide to aminoimidazole carboxamide ribotide and fumarate and the cleavage of adenylosuccinate to adenylate and fumarate []. ; GO: 0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, 0006188 IMP biosynthetic process; PDB: 2HVG_A 2QGA_C 2PTS_A 2PTR_A 2PTQ_B 3BHG_A 3GZH_A.
Probab=20.23 E-value=2.9e+02 Score=22.12 Aligned_cols=43 Identities=16% Similarity=0.202 Sum_probs=25.9
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHhcCCCChhhhHhhcccCCCC
Q psy14375 128 TLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPET 171 (206)
Q Consensus 128 TleYl~rFsk~~~~ea~e~vrelL~~~~L~kfEia~IaNL~P~t 171 (206)
.|+-++.|.+-+ .-..+.+++++....+.+.....|.+|.|.+
T Consensus 71 pYE~LK~lTRg~-~it~~~l~~fI~~L~ip~~~k~~L~~ltP~~ 113 (115)
T PF08328_consen 71 PYEKLKELTRGK-KITKEDLREFIESLDIPEEAKARLLALTPAT 113 (115)
T ss_dssp HHHHHHHHHTTS----HHHHHHHHHTSSS-HHHHHHHHH--CCC
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHhCCCCHHHHHHHHhcCccc
Confidence 566677777655 3335667777776677777777777777766
No 35
>PF14144 DOG1: Seed dormancy control
Probab=20.09 E-value=1.1e+02 Score=22.44 Aligned_cols=69 Identities=17% Similarity=0.269 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhhchhhhhhhhhHHHHHHHHHHHHhcccCCChHHHHHHHHHHhcCCCChhhhHh--hcccCCCCH
Q psy14375 98 ISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAA--IANLCPETP 172 (206)
Q Consensus 98 ~sEV~~IL~~~~~~~~~~d~~~els~v~~kTleYl~rFsk~~~~ea~e~vrelL~~~~L~kfEia~--IaNL~P~t~ 172 (206)
++|.+..|+... +.+.++..+..+.+.|...+-+.+...+...|-.++...=.+..|.+- |+...|...
T Consensus 3 l~eLr~al~~~~------~~~~~L~~lV~~~~~Hy~~y~~~K~~aa~~DV~~~~s~~W~sp~Er~flWiGG~RPS~~ 73 (80)
T PF14144_consen 3 LNELRAALQSHA------DSDDELRSLVDKVMSHYDEYYRAKSAAAKADVFHLLSPPWKSPLERCFLWIGGWRPSEL 73 (80)
T ss_pred HHHHHHHHHhcC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHhCCCCCCHHHHHHHHHhcCCHHHH
Confidence 345555555443 245677889999999988888877777778888888766678889876 888888654
Done!