Query psy14375
Match_columns 206
No_of_seqs 127 out of 288
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 18:15:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14375.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14375hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h0g_D DNA-directed RNA polyme 100.0 2.7E-41 9.3E-46 270.9 9.4 131 75-206 4-135 (135)
2 2c35_A Human RPB4, DNA-directe 100.0 9.3E-41 3.2E-45 272.2 11.7 135 72-206 18-152 (152)
3 3hou_D DNA-directed RNA polyme 100.0 1.5E-30 5E-35 221.8 12.2 130 75-204 18-220 (221)
4 1go3_F DNA-directed RNA polyme 100.0 1.8E-29 6.1E-34 195.1 6.8 107 85-202 1-107 (107)
5 1y14_A B32, RPB4, DNA-directed 99.9 1E-27 3.4E-32 201.1 11.3 86 119-204 101-186 (187)
6 4ayb_F DNA-directed RNA polyme 99.9 1.2E-27 4.3E-32 186.2 -2.8 111 85-203 1-112 (113)
7 3ayh_A DNA-directed RNA polyme 99.8 8.6E-20 3E-24 145.8 7.7 109 93-201 15-134 (136)
8 2ckz_A DNA-directed RNA polyme 99.7 1.8E-18 6.2E-23 142.0 4.2 111 92-202 7-161 (161)
9 4adn_A FAR1; antibiotic resist 70.6 13 0.00046 31.5 7.3 74 119-201 17-91 (222)
10 2kvc_A Putative uncharacterize 45.6 62 0.0021 24.2 6.4 79 121-200 4-88 (103)
11 1wud_A ATP-dependent DNA helic 45.4 13 0.00046 26.3 2.6 47 156-203 38-84 (89)
12 2dgz_A Werner syndrome protein 44.8 15 0.00051 27.6 2.9 46 156-203 47-92 (113)
13 3op9_A PLI0006 protein; struct 39.5 31 0.0011 24.4 3.8 57 147-204 54-111 (114)
14 3ol3_A Putative uncharacterize 39.1 1E+02 0.0034 23.2 6.7 78 121-199 9-96 (107)
15 2ahq_A Sigma-54, RNA polymeras 35.2 48 0.0017 23.3 4.2 29 175-203 25-64 (76)
16 2lky_A Uncharacterized protein 34.7 41 0.0014 25.6 3.9 79 121-200 6-90 (112)
17 3nso_A Protein S100-A3; EF-han 34.5 38 0.0013 24.4 3.6 13 170-182 50-62 (101)
18 1e91_A Paired amphipathic heli 32.4 17 0.00057 26.0 1.3 37 168-204 3-41 (85)
19 2jns_A Bromodomain-containing 31.1 31 0.0011 24.7 2.6 35 166-201 14-48 (90)
20 3i5g_B Myosin regulatory light 30.9 37 0.0013 25.4 3.2 27 171-197 103-129 (153)
21 3i5g_C Myosin catalytic light 30.8 32 0.0011 25.9 2.8 28 171-198 103-130 (159)
22 2ast_A S-phase kinase-associat 29.6 60 0.002 25.0 4.3 28 167-195 126-153 (159)
23 1g1e_B SIN3A; four-helix bundl 29.5 20 0.0007 25.8 1.4 38 166-203 4-43 (89)
24 2zxy_A Cytochrome C552, cytoch 29.5 38 0.0013 22.0 2.7 25 177-201 59-86 (87)
25 4fqn_A Malcavernin; helical do 29.3 46 0.0016 24.8 3.3 32 172-203 15-46 (98)
26 2lhi_A Calmodulin, serine/thre 28.4 54 0.0019 24.9 3.8 29 171-199 102-130 (176)
27 2e1f_A Werner syndrome ATP-dep 27.5 22 0.00077 26.1 1.3 46 156-203 40-85 (103)
28 2f05_A Paired amphipathic heli 27.3 21 0.00073 26.6 1.2 36 168-203 3-40 (105)
29 3kdw_A Putative sugar binding 26.8 56 0.0019 27.6 3.8 60 129-204 112-171 (221)
30 3rm1_A Protein S100-B; alpha-h 26.8 56 0.0019 22.2 3.3 33 169-201 48-84 (92)
31 2rhf_A DNA helicase RECQ; HRDC 26.3 47 0.0016 22.5 2.8 46 156-202 30-75 (77)
32 3p04_A Uncharacterized BCR; SE 25.7 25 0.00085 25.5 1.3 38 164-201 7-53 (87)
33 3t76_A VANU, transcriptional r 25.4 94 0.0032 21.6 4.3 50 145-199 27-76 (88)
34 1tiz_A Calmodulin-related prot 25.0 55 0.0019 19.7 2.7 12 171-182 35-46 (67)
35 1f1f_A Cytochrome C6; heme, pr 24.7 63 0.0021 21.1 3.2 25 178-202 61-85 (89)
36 1jw2_A Hemolysin expression mo 24.6 60 0.0021 22.9 3.0 32 129-161 9-40 (72)
37 2zon_G Cytochrome C551; nitrit 24.5 59 0.002 21.4 3.0 24 179-202 62-86 (87)
38 2lmt_A Calmodulin-related prot 24.4 55 0.0019 23.6 3.1 28 171-198 101-128 (148)
39 1gdv_A Cytochrome C6; RED ALGA 23.6 69 0.0023 20.7 3.2 25 178-202 57-81 (85)
40 1c7v_A CAVP, calcium vector pr 23.4 95 0.0032 19.7 3.8 13 170-182 42-54 (81)
41 1c6r_A Cytochrome C6; electron 23.3 69 0.0024 21.0 3.2 26 178-203 60-85 (89)
42 2kn2_A Calmodulin; S MAPK phos 23.0 76 0.0026 20.7 3.3 13 170-182 42-54 (92)
43 1w2l_A Cytochrome oxidase subu 23.0 47 0.0016 22.3 2.3 24 178-201 75-98 (99)
44 2lv7_A Calcium-binding protein 22.9 33 0.0011 24.2 1.5 9 187-195 70-78 (100)
45 1b0n_A Protein (SINR protein); 22.8 1.2E+02 0.004 20.7 4.5 32 172-203 76-107 (111)
46 3ivp_A Putative transposon-rel 22.8 85 0.0029 22.4 3.8 57 145-203 55-111 (126)
47 2obh_A Centrin-2; DNA repair c 22.6 71 0.0024 22.7 3.3 28 171-198 97-124 (143)
48 2b1u_A Calmodulin-like protein 22.2 63 0.0021 19.8 2.6 23 174-196 27-49 (71)
49 3dr0_A Cytochrome C6; photosyn 22.1 67 0.0023 21.0 2.9 25 178-202 64-88 (93)
50 3dmi_A Cytochrome C6; electron 21.9 74 0.0025 20.7 3.1 24 178-201 59-82 (88)
51 2yb5_A FUSC, putative fusidic 21.3 42 0.0014 28.2 2.0 72 120-201 11-83 (215)
52 3ph2_B Cytochrome C6; photosyn 21.3 78 0.0027 20.4 3.1 24 178-201 58-81 (86)
53 1cno_A Cytochrome C552; electr 20.9 48 0.0016 22.0 1.9 25 178-202 59-83 (87)
54 1cyi_A Cytochrome C6, cytochro 20.7 83 0.0028 20.7 3.2 25 178-202 59-83 (90)
55 3bos_A Putative DNA replicatio 20.7 1.5E+02 0.005 22.5 5.0 62 135-196 171-241 (242)
56 2c1d_B SOXX; sulfur oxidation, 20.3 50 0.0017 24.1 2.1 27 176-202 110-136 (137)
57 3fs7_A Parvalbumin, thymic; ca 20.2 1.1E+02 0.0038 20.5 3.8 15 95-109 6-20 (109)
58 2kz2_A Calmodulin, CAM; TR2C, 20.1 82 0.0028 21.3 3.1 12 171-182 63-74 (94)
No 1
>3h0g_D DNA-directed RNA polymerase II subunit RPB4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.7e-41 Score=270.92 Aligned_cols=131 Identities=36% Similarity=0.616 Sum_probs=120.0
Q ss_pred cccccccccCCCcccccccccccHHHHHHHHHHHHhhchh-hhhhhhhHHHHHHHHHHHHhcccCCChHHHHHHHHHHhc
Q psy14375 75 QVVEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNEN-AEEEQEFSEVFQKTLTYTERFRKFKNRETITSVRNLLTQ 153 (206)
Q Consensus 75 ~~~eEda~~LklG~eF~~a~~LT~sEV~~IL~~~~~~~~~-~d~~~els~v~~kTleYl~rFsk~~~~ea~e~vrelL~~ 153 (206)
+.+||||++|+||++|++++|||||||+.||++..+++.. ..+..++++++++|++|+++|+++++++++..|+++|+.
T Consensus 4 ~~~ee~a~~L~lg~eF~~a~~Ls~sEv~~lL~~~~~~r~~~~~~~~~~~~v~~kTl~Yl~~Fsk~~~~e~~~~v~~lL~~ 83 (135)
T 3h0g_D 4 AIFEEDAAQLKLGPEFENEDMLTVSEAKILIETVLAQRARETNGEIPMTDVMKKTVAYFNVFARFKTAEATYACERILGN 83 (135)
T ss_dssp --CCCCCTTTCSCHHHHHSCBCCHHHHHHHHHHHHHHHHTTCCSCCCCTTHHHHHHHHHHTTCTTCSHHHHHHHHHHCCC
T ss_pred hHHHHhHHhhCCCHhhcCcccccHHHHHHHHHHHHHHHHhcccCCcchhHHHHHHHHHHHHccCCCCHHHHHHHHHHHHh
Confidence 5688999999999999999999999999999988665432 123467899999999999999999999999999999998
Q ss_pred CCCChhhhHhhcccCCCCHHHHhhhhcccccCCCHHHHHHHHHHHHHhhhccC
Q psy14375 154 KKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKRSLQY 206 (206)
Q Consensus 154 ~~L~kfEia~IaNL~P~t~eEaraLIPSLe~r~sdeeLe~ILd~L~k~R~fq~ 206 (206)
+||+||+|+|+||||+|+||||+|||||+.++++++|++||++|++||+||.
T Consensus 84 -~L~~fEia~L~NL~P~t~dEak~LIpsL~~r~~de~L~~IL~~l~~~r~f~~ 135 (135)
T 3h0g_D 84 -RFHKFERAQLGTLCCEDAEEARTLIPSLANKIDDQNLQGILDELSTLRKFQD 135 (135)
T ss_dssp -CSCHHHHHHHHHHCCCCHHHHHHHCGGGTTTSCSHHHHHHHHHHHHHTTTCC
T ss_pred -cCCHHHHHHHccCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhcccC
Confidence 9999999999999999999999999999888999999999999999999995
No 2
>2c35_A Human RPB4, DNA-directed RNA polymerase II 16 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: a.60.8.2
Probab=100.00 E-value=9.3e-41 Score=272.25 Aligned_cols=135 Identities=77% Similarity=1.059 Sum_probs=121.2
Q ss_pred cCCcccccccccCCCcccccccccccHHHHHHHHHHHHhhchhhhhhhhhHHHHHHHHHHHHhcccCCChHHHHHHHHHH
Q psy14375 72 VLDQVVEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVRNLL 151 (206)
Q Consensus 72 ~~~~~~eEda~~LklG~eF~~a~~LT~sEV~~IL~~~~~~~~~~d~~~els~v~~kTleYl~rFsk~~~~ea~e~vrelL 151 (206)
+..+.+||||++|+||++|++++||||+||+.||++++......++..++++++++|++||++|++++++++++.++++|
T Consensus 18 ~~~~~~ee~a~~l~~gkef~~~~~Lt~sEV~~lL~~~~~~~~~~~~~~els~v~~kTl~Yl~~F~k~k~~e~~~~l~e~L 97 (152)
T 2c35_A 18 PRAGDVEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLNYTARFSRFKNRETIASVRSLL 97 (152)
T ss_dssp ------CCBGGGTBCCSSSSSCEECCHHHHHHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHHTCSCCSHHHHHHHHHHH
T ss_pred CCCCCccccHHHHhcchhhcccccccHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 56677889999999999999999999999999999998754433445788999999999999999999999999999999
Q ss_pred hcCCCChhhhHhhcccCCCCHHHHhhhhcccccCCCHHHHHHHHHHHHHhhhccC
Q psy14375 152 TQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKRSLQY 206 (206)
Q Consensus 152 ~~~~L~kfEia~IaNL~P~t~eEaraLIPSLe~r~sdeeLe~ILd~L~k~R~fq~ 206 (206)
..++||+||+|+|+||||+|++|||+|||+++.++++++|++||++|++||+|||
T Consensus 98 ~~~~L~~~E~a~L~NL~P~t~dEar~lipsl~~r~sdEeLe~ILd~l~k~r~f~~ 152 (152)
T 2c35_A 98 LQKKLHKFELACLANLCPETAEESKALIPSLEGRFEDEELQQILDDIQTKRSFQY 152 (152)
T ss_dssp HTSSCCHHHHHHHHHHCCSSHHHHHHHCGGGTTTSCHHHHHHHHHHHHHHCCCC-
T ss_pred HhcCCCHHHHHHhccCCCCCHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999999999997
No 3
>3hou_D DNA-directed RNA polymerase II subunit RPB4; RNA polymerase II, metal-binding, transcription bubble; HET: BRU; 3.20A {Saccharomyces cerevisiae} PDB: 1nt9_D 1y1w_D 1y1y_D 1y77_D* 2b63_D* 2b8k_D 2ja5_D* 2ja6_D* 2ja7_D* 2ja8_D* 2r7z_D 2r92_D 2r93_D 1y1v_D* 3fki_D 3h3v_E 2vum_D* 3hov_D* 3how_D* 3hox_D* ...
Probab=99.97 E-value=1.5e-30 Score=221.75 Aligned_cols=130 Identities=32% Similarity=0.537 Sum_probs=111.0
Q ss_pred cccccccccCCCcccccc-----------cccccHHHHHHHH----HHHHhhchh-------------------------
Q psy14375 75 QVVEEDAGDLQFPKEFEN-----------AETLLISEVHMLL----QHRKTQNEN------------------------- 114 (206)
Q Consensus 75 ~~~eEda~~LklG~eF~~-----------a~~LT~sEV~~IL----~~~~~~~~~------------------------- 114 (206)
-.+||+|+.|+||++|+- --+|++||++.|+ .+|+...++
T Consensus 18 ~~~eenaa~l~lg~efql~q~~~~g~~~~lialnlsearl~i~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (221)
T 3hou_D 18 VEEEENAATLQLGQEFQLKQINHQGEEEELIALNLSEARLVIKEALVERRRAFKRSQKKHKKKHLKHENANDETTAVEDE 97 (221)
T ss_dssp CCCCCCCSSSCCCGGGCSEEECTTSCEEECCBCCTTHHHHHHHHHHHHHHHHHHHTTCC---------------------
T ss_pred ccchhhhHHhhcCcccceeecccCCchhHhHhhhhHHHHHHHHHHHHHHHHHhhcccccccccccccccccccccccccc
Confidence 378899999999999975 4579999999985 334331000
Q ss_pred ---h-------h---------hhh--------------hhHHHHHHHHHHHHhcccCCChHHHHHHHHHHhcCCCChhhh
Q psy14375 115 ---A-------E---------EEQ--------------EFSEVFQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFEL 161 (206)
Q Consensus 115 ---~-------d---------~~~--------------els~v~~kTleYl~rFsk~~~~ea~e~vrelL~~~~L~kfEi 161 (206)
. + .+. ..+.+|++||+||++|++|++++++++|+++|...+||+||+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~e~e~~~~~~~~~~~~g~~seVf~KTLdYl~rFSKfkn~EAv~aVrELL~~~gLheFEi 177 (221)
T 3hou_D 98 DDDLDEDDVNADDDDFMHSETREKELESIDVLLEQTTGGNNKDLKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEV 177 (221)
T ss_dssp --------------------CTHHHHHHHHHHHHHHSCSCCHHHHHHHHHHHHSCSCCCHHHHHHHHHHHTTSCCCHHHH
T ss_pred cccccccccccccchhhhccchHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCChHHh
Confidence 0 0 001 235889999999999999999999999999999999999999
Q ss_pred HhhcccCCCCHHHHhhhhcccccCCCHHHHHHHHHHHHHhhhc
Q psy14375 162 AAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKRSL 204 (206)
Q Consensus 162 a~IaNL~P~t~eEaraLIPSLe~r~sdeeLe~ILd~L~k~R~f 204 (206)
|+|+||||+|+||||+|||||+.++++++|++||++|++||.|
T Consensus 178 AqLANLcPeTaDEARALIPSL~~k~sDEeLqeILdeLskyR~~ 220 (221)
T 3hou_D 178 AQLGSLACDTADEAKTLIPSLNNKISDDELERILKELSNLETL 220 (221)
T ss_dssp HHHHHSCCCSHHHHHHHCTTCTTSSCHHHHHHHHHHHHHHSCC
T ss_pred heecccCCCCHHHHHHHHHhhcccCCHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999899999999999999999976
No 4
>1go3_F DNA-directed RNA polymerase subunit F; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: a.60.8.2
Probab=99.96 E-value=1.8e-29 Score=195.08 Aligned_cols=107 Identities=21% Similarity=0.269 Sum_probs=97.1
Q ss_pred CCcccccccccccHHHHHHHHHHHHhhchhhhhhhhhHHHHHHHHHHHHhcccCCChHHHHHHHHHHhcCCCChhhhHhh
Q psy14375 85 QFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAI 164 (206)
Q Consensus 85 klG~eF~~a~~LT~sEV~~IL~~~~~~~~~~d~~~els~v~~kTleYl~rFsk~~~~ea~e~vrelL~~~~L~kfEia~I 164 (206)
++|++|.+++|||+|||+.||+++... .++++++++|++|+++|++++++++.+.+++++ ..+|++|++++|
T Consensus 1 mi~kei~~~~~lt~sEa~~iL~~~~~~-------~e~s~~~~ktl~y~~kFsk~~~e~a~~l~e~L~-~~~l~e~~a~~I 72 (107)
T 1go3_F 1 MIGKKILGERYVTVSEAAEIMYNRAQI-------GELSYEQGCALDYLQKFAKLDKEEAKKLVEELI-SLGIDEKTAVKI 72 (107)
T ss_dssp CCSSEEEEEEEECHHHHHHHHHHHHHH-------SCCCHHHHHHHHHHHHHCCSCHHHHHHHHHHHH-HTTCCHHHHHHH
T ss_pred CchHHHhcccccCHHHHHHHHHHHHhc-------ccccHHHHHHHHHHHHHhCCCHHHHHHHHHHHH-hCCCCHHHHHHH
Confidence 589999999999999999999998752 567899999999999999998777777776666 567999999999
Q ss_pred cccCCCCHHHHhhhhcccccCCCHHHHHHHHHHHHHhh
Q psy14375 165 ANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKR 202 (206)
Q Consensus 165 aNL~P~t~eEaraLIPSLe~r~sdeeLe~ILd~L~k~R 202 (206)
+||||+|+||||+|||+++. +++|++||++|++||
T Consensus 73 ~nl~P~t~dElraii~~~~~---~eel~~ILd~l~k~~ 107 (107)
T 1go3_F 73 ADILPEDLDDLRAIYYKREL---PENAEEILEIVRKYI 107 (107)
T ss_dssp HHHCCCSHHHHHHHSTTSCC---CTTHHHHHHHHTTCC
T ss_pred HHhCCCCHHHHHHHHhcccC---cHHHHHHHHHHHHcC
Confidence 99999999999999999953 999999999999986
No 5
>1y14_A B32, RPB4, DNA-directed RNA polymerase II 32 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: a.60.8.2
Probab=99.95 E-value=1e-27 Score=201.07 Aligned_cols=86 Identities=34% Similarity=0.611 Sum_probs=83.4
Q ss_pred hhhHHHHHHHHHHHHhcccCCChHHHHHHHHHHhcCCCChhhhHhhcccCCCCHHHHhhhhcccccCCCHHHHHHHHHHH
Q psy14375 119 QEFSEVFQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDI 198 (206)
Q Consensus 119 ~els~v~~kTleYl~rFsk~~~~ea~e~vrelL~~~~L~kfEia~IaNL~P~t~eEaraLIPSLe~r~sdeeLe~ILd~L 198 (206)
.++++++++|++||++|++++++++++.|+++|..++|++||+|+|+||||+|++|||+|||+++.++++++|++||++|
T Consensus 101 ~~ls~v~~KTLeYl~rFsk~kn~Esa~elre~L~~~kL~efE~aqLaNL~PeTadEaraLIpSle~rlsdEeLeeILd~L 180 (187)
T 1y14_A 101 GGNNKDLKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLNNKISDDELERILKEL 180 (187)
T ss_dssp CSCCHHHHHHHHHHHHHCSCCSHHHHHHHHHHHHTTTCCHHHHHHHHHSCCSSHHHHHHHSGGGTTTSCHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCCHHHHHHcCcCCCCCHHHHHHHHHhhccCCCHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhc
Q psy14375 199 QTKRSL 204 (206)
Q Consensus 199 ~k~R~f 204 (206)
++||+|
T Consensus 181 ~k~r~~ 186 (187)
T 1y14_A 181 SNLETL 186 (187)
T ss_dssp HHHCCC
T ss_pred HHhhcc
Confidence 999998
No 6
>4ayb_F DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_F 2y0s_F 2waq_F 4b1o_F 4b1p_U 2pmz_F 3hkz_F
Probab=99.92 E-value=1.2e-27 Score=186.25 Aligned_cols=111 Identities=20% Similarity=0.256 Sum_probs=92.6
Q ss_pred CCcccccccccccHHHHHHHHHHHHhhchhhhhhhhhHHHHHHHHHHHHhcccCCChHHHHHHHHHHhcCCCChhhhHhh
Q psy14375 85 QFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAI 164 (206)
Q Consensus 85 klG~eF~~a~~LT~sEV~~IL~~~~~~~~~~d~~~els~v~~kTleYl~rFsk~~~~ea~e~vrelL~~~~L~kfEia~I 164 (206)
++|++..+.+++|++||+.||.++... .++++++++|++|+++|++++++++.+++++++. .++++|++|+|
T Consensus 1 m~~~~ii~e~~it~~eakeiL~~~~~~-------~~~s~~~~ktl~y~~~Fsk~~~e~a~~l~e~L~~-~~l~~~~~a~I 72 (113)
T 4ayb_F 1 MSSVYIVEEHYIPYSVAKKLLSDVIKS-------GSSSNLLQRTYDYLNSVEKCDAESAQKVVEELSS-IISREDVRAVL 72 (113)
T ss_dssp --CCEEEEEEEECTTGGGGTTTTTSSS-------SCCCTTHHHHHHHTTTTCSSCHHHHHHHHHHHHT-TCCCHHHHHHH
T ss_pred CCcceeecccccCHHHHHHHHHHHHhc-------ccccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-cCCCHHHHHHH
Confidence 578899999999999999999887432 4567899999999999999987777776666665 68999999999
Q ss_pred cccCCCCHHHHhhhhcccccC-CCHHHHHHHHHHHHHhhh
Q psy14375 165 ANLCPETPEEAKALIPSLECR-FEEEELRQILDDIQTKRS 203 (206)
Q Consensus 165 aNL~P~t~eEaraLIPSLe~r-~sdeeLe~ILd~L~k~R~ 203 (206)
+||||+|+||||+||||++++ +++++|++||++|++|++
T Consensus 73 anL~P~~~dElrali~s~e~~~~~deeL~~IL~~l~ky~~ 112 (113)
T 4ayb_F 73 ASICPITPDEVRSILIMDSNRTYTSEDIQKIIDIIRKYIK 112 (113)
T ss_dssp HHHCCCSSCCCCTTTTTTCCCCCCCTHHHHHHHHC-----
T ss_pred HHcCCCCHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999754 899999999999999975
No 7
>3ayh_A DNA-directed RNA polymerase III subunit RPC9; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=99.80 E-value=8.6e-20 Score=145.82 Aligned_cols=109 Identities=21% Similarity=0.272 Sum_probs=95.8
Q ss_pred cccccHHHHHHHHHHHHhhchh---hhh------hhhhHHHHHHHHHHHHhccc--CCChHHHHHHHHHHhcCCCChhhh
Q psy14375 93 AETLLISEVHMLLQHRKTQNEN---AEE------EQEFSEVFQKTLTYTERFRK--FKNRETITSVRNLLTQKKLHKFEL 161 (206)
Q Consensus 93 a~~LT~sEV~~IL~~~~~~~~~---~d~------~~els~v~~kTleYl~rFsk--~~~~ea~e~vrelL~~~~L~kfEi 161 (206)
+.+|||+||..+|++++.+... ... ..+++.++++|++|+++|.+ +.+++++..+.+.|+.++|+++|+
T Consensus 15 ~a~LsN~EVl~~L~~~~~~~~~~~~~~~~~~~~~~~~l~ti~~e~l~YL~~~p~~~~q~~e~i~~l~~~L~~~~Ltk~E~ 94 (136)
T 3ayh_A 15 DAYLTNAEVFFHLKEMENEQNARTQERGAAQALVCENLRTIQFEILKYLSSQGNCEGLTKERFLDCIAIFNEFELTKAEI 94 (136)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHHHHHHGGGGCCCCHHHHHHHHHHHHHHHTTTCCTTCCHHHHHHHHHTTTTTCCCHHHH
T ss_pred cccccHHHHHHHHHHHHhhhcccccccCCccccccchHHHHHHHHHHHHHhCCCccccCHHHHHHHHHHHHhcCCCHHHH
Confidence 6899999999999998764421 111 16789999999999999964 357888888888899999999999
Q ss_pred HhhcccCCCCHHHHhhhhcccccCCCHHHHHHHHHHHHHh
Q psy14375 162 AAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTK 201 (206)
Q Consensus 162 a~IaNL~P~t~eEaraLIPSLe~r~sdeeLe~ILd~L~k~ 201 (206)
+||+|+||.++.|+++||+..+.||+||++++||++|+++
T Consensus 95 LqivNl~P~t~vel~~iIEe~e~Rfsee~ie~IL~~i~~~ 134 (136)
T 3ayh_A 95 LVILNNKPSSVPELYACIEGIEERFKEEDIFKLVEKINTT 134 (136)
T ss_dssp HHHHHHCCCSHHHHHHHSTTHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHhccCCCCHHHHHHHHHhcccCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999986
No 8
>2ckz_A DNA-directed RNA polymerase III 18 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.8e-18 Score=142.04 Aligned_cols=111 Identities=18% Similarity=0.219 Sum_probs=33.0
Q ss_pred ccccccHHHHHHHHHHHHhhchh-----------------hh--hhhhhHHHHHHHHHHHHhccc---------------
Q psy14375 92 NAETLLISEVHMLLQHRKTQNEN-----------------AE--EEQEFSEVFQKTLTYTERFRK--------------- 137 (206)
Q Consensus 92 ~a~~LT~sEV~~IL~~~~~~~~~-----------------~d--~~~els~v~~kTleYl~rFsk--------------- 137 (206)
++.+|||.||..+|+++...... .. ...+++.+++.|++||.++++
T Consensus 7 ~~a~LSN~EVl~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ti~~e~~~YL~~~p~~~~~~~~~~~~~~~~ 86 (161)
T 2ckz_A 7 RNAFLSDYEVLKFLTDLEKKHLWDQKSLAALKKSRSKGKQNRPYNHPELQGITRNVVNYLSINKNFINQEDEGEERESSG 86 (161)
T ss_dssp EEEEECHHHHHHHHHHHHHHTTCSHHHHHCC----------CCCCCHHHHHHHHHHHHHHTC------------------
T ss_pred hhhhhhHHHHHHHHHHhhhhccccccchhhhhcccccccccCCCCCccHHHHHHHHHHHHHhCCcccccccccccccccc
Confidence 35789999999999998765320 00 125688999999999999987
Q ss_pred ----------CCChHHHHHHHHHHhcCCCChhhhHhhcccCCCCHHHHhhhhcccccCCCHHHHHHHHHHHHHhh
Q psy14375 138 ----------FKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKR 202 (206)
Q Consensus 138 ----------~~~~ea~e~vrelL~~~~L~kfEia~IaNL~P~t~eEaraLIPSLe~r~sdeeLe~ILd~L~k~R 202 (206)
..+++++..+.+.|..++|+++|++||+||||.++.|+++||+..+.||++|++++||++|+.||
T Consensus 87 ~~~~~~~~~~~~~~e~i~~l~~~L~~~~Ltk~E~lqivNl~P~s~vel~~iIEe~e~Rfsee~ie~IL~ii~~~~ 161 (161)
T 2ckz_A 87 AKDAEKSGISKMSDESFAELMTKLNSFKLFKAEKLQIVNQLPANMVHLYSIVEECDARFDEKTIEEMLEIISAYA 161 (161)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred ccccccccccccCHHHHHHHHHHHHhcCCCHHHHHHHhccCCCCHHHHHHHHHhcccCCCHHHHHHHHHHHHHhC
Confidence 23466667777777889999999999999999999999999999999999999999999999886
No 9
>4adn_A FAR1; antibiotic resistance; 1.65A {Staphylococcus aureus} PDB: 4ado_A
Probab=70.65 E-value=13 Score=31.45 Aligned_cols=74 Identities=12% Similarity=0.274 Sum_probs=60.4
Q ss_pred hhhHHHHHHHHHHHHhcccCCChHHHHHHHHHHhcCCCChhhhHhhcccCCCCHHHHhhhhccccc-CCCHHHHHHHHHH
Q psy14375 119 QEFSEVFQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLEC-RFEEEELRQILDD 197 (206)
Q Consensus 119 ~els~v~~kTleYl~rFsk~~~~ea~e~vrelL~~~~L~kfEia~IaNL~P~t~eEaraLIPSLe~-r~sdeeLe~ILd~ 197 (206)
.+.+.+=+++..=++.+....++..++.++.+.. ..|.+++|+-.+|.+.|+..+.. +++.++.+..|+.
T Consensus 17 ~QYN~IK~qv~~L~~a~~tvnD~~vi~avk~~~~---------~kI~~~f~~~~~eq~~lL~~i~~~~lt~~~~e~~L~~ 87 (222)
T 4adn_A 17 HQYNYIRSVILRLKNVYKTVNDKETVKVIQSETY---------NDINEIFGHIDDDIEESLKVLMNIRLSNKEIEAILNK 87 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---------HHHHTTCSSCCHHHHHHHHHHTSTTCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHH---------HHHHHHcccCCHHHHHHHHHHhcccCCHHHHHHHHHH
Confidence 4556777788888888998899999888887753 34888999999999999986654 4589999999999
Q ss_pred HHHh
Q psy14375 198 IQTK 201 (206)
Q Consensus 198 L~k~ 201 (206)
|..|
T Consensus 88 Lk~y 91 (222)
T 4adn_A 88 FLEY 91 (222)
T ss_dssp HHTT
T ss_pred HHHH
Confidence 9887
No 10
>2kvc_A Putative uncharacterized protein; structural genomics, seattle structural genomi for infectious disease, ssgcid, unknown function; NMR {Mycobacterium tuberculosis}
Probab=45.56 E-value=62 Score=24.25 Aligned_cols=79 Identities=13% Similarity=0.151 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHHHh-cccCCChHHHHHHHHHHhcCCCChhhhHhhcccC----CCCHHHHhhhhcccccC-CCHHHHHHH
Q psy14375 121 FSEVFQKTLTYTER-FRKFKNRETITSVRNLLTQKKLHKFELAAIANLC----PETPEEAKALIPSLECR-FEEEELRQI 194 (206)
Q Consensus 121 ls~v~~kTleYl~r-Fsk~~~~ea~e~vrelL~~~~L~kfEia~IaNL~----P~t~eEaraLIPSLe~r-~sdeeLe~I 194 (206)
++..+.+.+++|+. |..-=++.----+..+|.+ .|++.|+.+++.-. +-|.+|++..|-..-.. -++++|+++
T Consensus 4 ~~~~l~siv~WLRaGYP~GVP~~Dy~PLlALL~r-~Ltdeev~~Va~~L~~~~~i~~~dI~~~I~~vt~~~Ps~eDI~RV 82 (103)
T 2kvc_A 4 MNRFLTSIVAWLRAGYPEGIPPTDSFAVLALLCR-RLSHDEVKAVANELMRLGDFDQIDIGVVITHFTDELPSPEDVERV 82 (103)
T ss_dssp HHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTT-TSCHHHHHHHHHHHHHHTSSCSSCHHHHHHSCCSSCSCHHHHHHH
T ss_pred ccHHHHHHHHHHHccCCCCCCCcchHHHHHHHhc-cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhccCCCHHHHHHH
Confidence 35567888888887 5554445555666677764 69999987755544 66788889998877543 479999998
Q ss_pred HHHHHH
Q psy14375 195 LDDIQT 200 (206)
Q Consensus 195 Ld~L~k 200 (206)
..-|..
T Consensus 83 ~arLaa 88 (103)
T 2kvc_A 83 RARLAA 88 (103)
T ss_dssp HHHHGG
T ss_pred HHHHHh
Confidence 877653
No 11
>1wud_A ATP-dependent DNA helicase RECQ; DNA-binding domain, HRDC, hydrolase; 2.20A {Escherichia coli} SCOP: a.60.8.1
Probab=45.36 E-value=13 Score=26.29 Aligned_cols=47 Identities=17% Similarity=0.147 Sum_probs=33.3
Q ss_pred CChhhhHhhcccCCCCHHHHhhhhcccccCCCHHHHHHHHHHHHHhhh
Q psy14375 156 LHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKRS 203 (206)
Q Consensus 156 L~kfEia~IaNL~P~t~eEaraLIPSLe~r~sdeeLe~ILd~L~k~R~ 203 (206)
|++..+..|+..+|.|.+|+..+ +....+.-+.--+.+|+.|..++.
T Consensus 38 f~D~tL~eiA~~~P~t~~eL~~i-~Gvg~~k~~~yG~~~l~~I~~~~~ 84 (89)
T 1wud_A 38 FNDATLIEMAEQMPITASEMLSV-NGVGMRKLERFGKPFMALIRAHVD 84 (89)
T ss_dssp CCHHHHHHHHHHCCCSHHHHHTS-TTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred eCHHHHHHHHHhCCCCHHHHhhC-CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 56666778999999999999876 444322223345778888888764
No 12
>2dgz_A Werner syndrome protein variant; HRDC domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.60.8.1
Probab=44.77 E-value=15 Score=27.58 Aligned_cols=46 Identities=17% Similarity=0.084 Sum_probs=31.9
Q ss_pred CChhhhHhhcccCCCCHHHHhhhhcccccCCCHHHHHHHHHHHHHhhh
Q psy14375 156 LHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKRS 203 (206)
Q Consensus 156 L~kfEia~IaNL~P~t~eEaraLIPSLe~r~sdeeLe~ILd~L~k~R~ 203 (206)
+++.....|+..+|.|.+|+..|----..++.. - +.||+.|+.|+.
T Consensus 47 f~D~tL~emA~~~P~t~~eL~~I~Gvg~~K~~~-y-~~~L~~I~~~~~ 92 (113)
T 2dgz_A 47 ATNKILVDMAKMRPTTVENVKRIDGVSEGKAAM-L-APLWEVIKHFCQ 92 (113)
T ss_dssp CCHHHHHHHHHHCCCSHHHHHHSSSCCTTGGGG-G-HHHHHHHHHHHH
T ss_pred ECHHHHHHHHHhCCCCHHHHHhCCCCCHHHHHH-H-HHHHHHHHHHHH
Confidence 556667779999999999998863222223322 2 788888888764
No 13
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=39.49 E-value=31 Score=24.38 Aligned_cols=57 Identities=25% Similarity=0.064 Sum_probs=32.4
Q ss_pred HHHHHhcCCCChhhhHhhcc-cCCCCHHHHhhhhcccccCCCHHHHHHHHHHHHHhhhc
Q psy14375 147 VRNLLTQKKLHKFELAAIAN-LCPETPEEAKALIPSLECRFEEEELRQILDDIQTKRSL 204 (206)
Q Consensus 147 vrelL~~~~L~kfEia~IaN-L~P~t~eEaraLIPSLe~r~sdeeLe~ILd~L~k~R~f 204 (206)
+..+...++++..+.....+ --+....+.+.++..+ ..+++++++.|++.+..++++
T Consensus 54 l~~la~~l~v~~~~l~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~i~~~i~~i~~~ 111 (114)
T 3op9_A 54 LIRLATYFHLSIDELVGYVQEDKVWNDLSLKQWLLSL-NLRSEEEIAKIKILVDTVETL 111 (114)
T ss_dssp HHHHHHHHTCCHHHHHTCCCC--CCSCHHHHHHHHHG-GGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHhcCCCcccccCcHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHH
Confidence 33333334565555443221 1122234566666666 457899999999888887653
No 14
>3ol3_A Putative uncharacterized protein; tuberculosis, RV0543C, ortholog, iodide ION S phasing, structural genomics; HET: PG4 PGE; 1.95A {Mycobacterium smegmatis} PDB: 3ol4_A
Probab=39.13 E-value=1e+02 Score=23.23 Aligned_cols=78 Identities=14% Similarity=0.216 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHHHh-cccCCChHHHHHHHHHHhcCCCChhhhHhhcccC--------CCCHHHHhhhhcccccC-CCHHH
Q psy14375 121 FSEVFQKTLTYTER-FRKFKNRETITSVRNLLTQKKLHKFELAAIANLC--------PETPEEAKALIPSLECR-FEEEE 190 (206)
Q Consensus 121 ls~v~~kTleYl~r-Fsk~~~~ea~e~vrelL~~~~L~kfEia~IaNL~--------P~t~eEaraLIPSLe~r-~sdee 190 (206)
.+..+.+.+++++. |..-=+..----+..+|.+ .|++.|+.+++.-+ |-|.++++.+|-..-.. -++++
T Consensus 9 ~p~~l~siv~WLRaGYPeGVP~~Dy~PLlALL~R-~Ltddev~~Va~~L~~~~~~~~pi~~~dI~~~It~vT~~~P~~eD 87 (107)
T 3ol3_A 9 TTTFMDNVLGWLHKGYPEGVPPKDYFALLALLKR-SLTEDEVVRAAQAILRSTDGQSPVTDDDIRNAVHQIIEKEPTAEE 87 (107)
T ss_dssp CHHHHHHHHHHHHHHCTTCBCGGGHHHHHHHHTC-CCCHHHHHHHHHHHHHHCCSSSCBCHHHHHHHHHHHHSSCCCHHH
T ss_pred CcHHHHHHHHHHHccCCCCCCCCccHHHHHHhcc-cCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHhcCCcCHHH
Confidence 35678888888887 5543334434556677765 59998876654322 67889999999877544 47899
Q ss_pred HHHHHHHHH
Q psy14375 191 LRQILDDIQ 199 (206)
Q Consensus 191 Le~ILd~L~ 199 (206)
|+++-.-|.
T Consensus 88 i~RV~arLa 96 (107)
T 3ol3_A 88 INQVAARLA 96 (107)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887765
No 15
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=35.22 E-value=48 Score=23.30 Aligned_cols=29 Identities=17% Similarity=0.399 Sum_probs=20.7
Q ss_pred Hhhhhcccc--cCCCHHHHHHHH---------HHHHHhhh
Q psy14375 175 AKALIPSLE--CRFEEEELRQIL---------DDIQTKRS 203 (206)
Q Consensus 175 araLIPSLe--~r~sdeeLe~IL---------d~L~k~R~ 203 (206)
++.||..+. ..++|+.|.++| ..+++||.
T Consensus 25 Ik~lI~~Ed~~kPlSD~~I~~~L~~~Gi~IaRRTVaKYRe 64 (76)
T 2ahq_A 25 IKEIVENEDKRKPYSDQEIANILKEKGFKVARRTVAKYRE 64 (76)
T ss_dssp HHHHGGGCCSSSCCCHHHHHHHHTTTSSCCCHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHcCCCccHHHHHHHHH
Confidence 344666663 348999999999 56788875
No 16
>2lky_A Uncharacterized protein; infectious disease, tuberculosis, DUF proteins, ssgcid, STRU genomics; NMR {Mycobacterium smegmatis str}
Probab=34.66 E-value=41 Score=25.64 Aligned_cols=79 Identities=16% Similarity=0.176 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHHHh-cccCCChHHHHHHHHHHhcCCCChhhhHhhcccC----CCCHHHHhhhhcccccC-CCHHHHHHH
Q psy14375 121 FSEVFQKTLTYTER-FRKFKNRETITSVRNLLTQKKLHKFELAAIANLC----PETPEEAKALIPSLECR-FEEEELRQI 194 (206)
Q Consensus 121 ls~v~~kTleYl~r-Fsk~~~~ea~e~vrelL~~~~L~kfEia~IaNL~----P~t~eEaraLIPSLe~r-~sdeeLe~I 194 (206)
++..+.+.+++|+. |..-=+..----+..+|. -.|++.|+.+++..+ +-|.+|++.+|-..-.. -++++|+++
T Consensus 6 ~~~~l~siv~WLRAGYP~GVP~~Dy~PLLALL~-r~Ltdeev~~Va~~L~~~~~i~~~dI~~~I~~vt~~~Ps~eDI~RV 84 (112)
T 2lky_A 6 VNAFLAKIAAWLNAGYPEGVPGPDRVPLLALLT-RRLTNDEIKAIAEDLEKRAHFDHIDIGVLITQMTDEMPREEDIERV 84 (112)
T ss_dssp SCHHHHHHHHHHHHHCSSCCCHHHHHHHHHHHT-TTCCHHHHHHHHHHHHHHCCCSCCCSHHHHHHHTTCCCCHHHHHHH
T ss_pred ccHHHHHHHHHHHccCCCCCCCcchHHHHHHHc-ccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhccCCCHHHHHHH
Confidence 34567778888876 554444444555666666 468888887655443 56677778887766543 478999998
Q ss_pred HHHHHH
Q psy14375 195 LDDIQT 200 (206)
Q Consensus 195 Ld~L~k 200 (206)
..-|..
T Consensus 85 ~arLaa 90 (112)
T 2lky_A 85 RRHLAL 90 (112)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 887753
No 17
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding protein; 1.45A {Homo sapiens} SCOP: a.39.1.2 PDB: 3nsi_A 1kso_A 3nsk_A 3nsl_A
Probab=34.52 E-value=38 Score=24.35 Aligned_cols=13 Identities=8% Similarity=0.033 Sum_probs=6.2
Q ss_pred CCHHHHhhhhccc
Q psy14375 170 ETPEEAKALIPSL 182 (206)
Q Consensus 170 ~t~eEaraLIPSL 182 (206)
-|.+|+..+|-.+
T Consensus 50 ~~~~ev~~~i~~~ 62 (101)
T 3nso_A 50 FRECDYNKFMSVL 62 (101)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHh
Confidence 3445555555444
No 18
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=32.40 E-value=17 Score=25.99 Aligned_cols=37 Identities=19% Similarity=0.226 Sum_probs=31.5
Q ss_pred CCCCHHHHhhhhcccccCC--CHHHHHHHHHHHHHhhhc
Q psy14375 168 CPETPEEAKALIPSLECRF--EEEELRQILDDIQTKRSL 204 (206)
Q Consensus 168 ~P~t~eEaraLIPSLe~r~--sdeeLe~ILd~L~k~R~f 204 (206)
-|.|.++|...+-..+.+| .++..++.|++|..|++-
T Consensus 3 ~~~~~~~A~~yv~kVK~rF~~~p~~Y~~FL~il~~yk~~ 41 (85)
T 1e91_A 3 DSVEFNNAISYVNKIKTRFLDHPEIYRSFLEILHTYQKE 41 (85)
T ss_dssp SCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHT
T ss_pred CCccHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHc
Confidence 3667889999999998888 568899999999999764
No 19
>2jns_A Bromodomain-containing protein 4; ET-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=31.06 E-value=31 Score=24.69 Aligned_cols=35 Identities=23% Similarity=0.347 Sum_probs=27.4
Q ss_pred ccCCCCHHHHhhhhcccccCCCHHHHHHHHHHHHHh
Q psy14375 166 NLCPETPEEAKALIPSLECRFEEEELRQILDDIQTK 201 (206)
Q Consensus 166 NL~P~t~eEaraLIPSLe~r~sdeeLe~ILd~L~k~ 201 (206)
+-.|-|.+|-+.|--.+ ..++.+.|..++++|++.
T Consensus 14 ~~~~mT~eEK~~Ls~~I-~~Lp~e~L~~Vi~II~~~ 48 (90)
T 2jns_A 14 KCKPMSYEEKRQLSLDI-NKLPGEKLGRVVHIIQSR 48 (90)
T ss_dssp SCCCCCHHHHHHHHHHH-TTSCHHHHTTHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHH-HHcCHHHHHHHHHHHHhc
Confidence 44677888888888888 578888888888888764
No 20
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=30.91 E-value=37 Score=25.36 Aligned_cols=27 Identities=22% Similarity=0.458 Sum_probs=18.6
Q ss_pred CHHHHhhhhcccccCCCHHHHHHHHHH
Q psy14375 171 TPEEAKALIPSLECRFEEEELRQILDD 197 (206)
Q Consensus 171 t~eEaraLIPSLe~r~sdeeLe~ILd~ 197 (206)
+++|++.++-.+..+++++++++|+..
T Consensus 103 ~~~el~~~l~~~g~~ls~~ei~~~~~~ 129 (153)
T 3i5g_B 103 PEDYLKDLLENMGDNFSKEEIKNVWKD 129 (153)
T ss_dssp CHHHHHHHHHSSSSCCCHHHHHHHHTT
T ss_pred eHHHHHHHHHHcCCcCCHHHHHHHHHH
Confidence 566777777777667777777777654
No 21
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=30.81 E-value=32 Score=25.86 Aligned_cols=28 Identities=18% Similarity=0.283 Sum_probs=16.6
Q ss_pred CHHHHhhhhcccccCCCHHHHHHHHHHH
Q psy14375 171 TPEEAKALIPSLECRFEEEELRQILDDI 198 (206)
Q Consensus 171 t~eEaraLIPSLe~r~sdeeLe~ILd~L 198 (206)
+++|+|.++-.+..++++++++.|+..+
T Consensus 103 ~~~el~~~l~~~g~~ls~~e~~~l~~~~ 130 (159)
T 3i5g_C 103 SSAEIRNVLKMLGERITEDQCNDIFTFC 130 (159)
T ss_dssp CHHHHHHHHHHSSSCCCHHHHHHHHHHT
T ss_pred cHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 4555555665555566666666666543
No 22
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=29.56 E-value=60 Score=24.98 Aligned_cols=28 Identities=32% Similarity=0.442 Sum_probs=21.3
Q ss_pred cCCCCHHHHhhhhcccccCCCHHHHHHHH
Q psy14375 167 LCPETPEEAKALIPSLECRFEEEELRQIL 195 (206)
Q Consensus 167 L~P~t~eEaraLIPSLe~r~sdeeLe~IL 195 (206)
|..+|++|+|.++- +...|++|+.++|-
T Consensus 126 i~gkt~eeir~~f~-I~~d~t~eEe~~ir 153 (159)
T 2ast_A 126 IKGKTPEEIRKTFN-IKNDFTEEEEAQVR 153 (159)
T ss_dssp HSSCCHHHHHHHTT-CCCCSCTTHHHHHH
T ss_pred HcCCCHHHHHHHcC-CCCCCCHHHHHHHH
Confidence 56789999999985 44678887776653
No 23
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=29.55 E-value=20 Score=25.79 Aligned_cols=38 Identities=18% Similarity=0.276 Sum_probs=32.7
Q ss_pred ccCCCCHHHHhhhhcccccCC--CHHHHHHHHHHHHHhhh
Q psy14375 166 NLCPETPEEAKALIPSLECRF--EEEELRQILDDIQTKRS 203 (206)
Q Consensus 166 NL~P~t~eEaraLIPSLe~r~--sdeeLe~ILd~L~k~R~ 203 (206)
+--|.+.++|...+-..+.|| .++..++.|++|..|++
T Consensus 4 ~~~~~~~~~A~~YvnkVK~rF~~~p~~Y~~FL~IL~~y~~ 43 (89)
T 1g1e_B 4 NNQPVEFNHAINYVNKIKNRFQGQPDIYKAFLEILHTYQK 43 (89)
T ss_dssp CCCTHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHh
Confidence 445778899999999999888 68899999999999975
No 24
>2zxy_A Cytochrome C552, cytochrome C555; heme protein, oxygen binding, transport protein; HET: HEC; 1.15A {Aquifex aeolicus}
Probab=29.50 E-value=38 Score=22.01 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=19.5
Q ss_pred hhhccc---ccCCCHHHHHHHHHHHHHh
Q psy14375 177 ALIPSL---ECRFEEEELRQILDDIQTK 201 (206)
Q Consensus 177 aLIPSL---e~r~sdeeLe~ILd~L~k~ 201 (206)
...|.. ...++++++..|+..|.++
T Consensus 59 ~~Mp~~~~~~~~ls~~ei~~l~~yl~sl 86 (87)
T 2zxy_A 59 AIMKPQLTMLKGLSDAELKALADFILSH 86 (87)
T ss_dssp HHHGGGGGGGGGCCHHHHHHHHHHHHTC
T ss_pred CCCCCccccccCCCHHHHHHHHHHHHhc
Confidence 456665 4578999999999988765
No 25
>4fqn_A Malcavernin; helical domain, harmonin-homology domain, protein-protein interaction, HOMO-dimer, protein binding; 1.90A {Homo sapiens}
Probab=29.30 E-value=46 Score=24.82 Aligned_cols=32 Identities=16% Similarity=0.281 Sum_probs=26.6
Q ss_pred HHHHhhhhcccccCCCHHHHHHHHHHHHHhhh
Q psy14375 172 PEEAKALIPSLECRFEEEELRQILDDIQTKRS 203 (206)
Q Consensus 172 ~eEaraLIPSLe~r~sdeeLe~ILd~L~k~R~ 203 (206)
.+.++-.+-+|..++++++|++...+|..||.
T Consensus 15 ~e~lqdYM~~L~~~L~~~ElqqFA~Llr~YR~ 46 (98)
T 4fqn_A 15 TELLQDYMLTLRTKLSSQEIQQFAALLHEYRN 46 (98)
T ss_dssp HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhcChHHHHHHHHHHHHHHc
Confidence 45667777788888999999999999999984
No 26
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=28.36 E-value=54 Score=24.92 Aligned_cols=29 Identities=17% Similarity=0.438 Sum_probs=19.4
Q ss_pred CHHHHhhhhcccccCCCHHHHHHHHHHHH
Q psy14375 171 TPEEAKALIPSLECRFEEEELRQILDDIQ 199 (206)
Q Consensus 171 t~eEaraLIPSLe~r~sdeeLe~ILd~L~ 199 (206)
+.+|++.++-.+...++++++++|+..+.
T Consensus 102 ~~~el~~~l~~~g~~~~~~ei~~l~~~~d 130 (176)
T 2lhi_A 102 SAAELKHVLTSIGEKLTDAEVDDMLREVS 130 (176)
T ss_dssp CHHHHHHHHHTTTCCCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCcccchHHHHHHHHhhc
Confidence 45666666666666677777777776554
No 27
>2e1f_A Werner syndrome ATP-dependent helicase; HRDC domain, hydrolase; 2.00A {Homo sapiens} SCOP: a.60.8.1 PDB: 2e1e_A
Probab=27.53 E-value=22 Score=26.10 Aligned_cols=46 Identities=20% Similarity=0.118 Sum_probs=31.3
Q ss_pred CChhhhHhhcccCCCCHHHHhhhhcccccCCCHHHHHHHHHHHHHhhh
Q psy14375 156 LHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKRS 203 (206)
Q Consensus 156 L~kfEia~IaNL~P~t~eEaraLIPSLe~r~sdeeLe~ILd~L~k~R~ 203 (206)
+++.....|+..+|.|.+|+..|----..++ +.- +.+|+.|+.|+.
T Consensus 40 f~D~tL~emA~~~P~t~~eL~~I~Gvg~~K~-~~y-~~~L~~I~~~~~ 85 (103)
T 2e1f_A 40 ATNKILVDMAKMRPTTVENVKRIDGVSEGKA-AML-APLLEVIKHFCQ 85 (103)
T ss_dssp CCHHHHHHHHHHCCCSHHHHTTSTTCCHHHH-HHT-HHHHHHHHHHHH
T ss_pred ECHHHHHHHHHhCCCCHHHHhcCCCCCHHHH-HHH-HHHHHHHHHHHH
Confidence 5666677799999999999987632221222 223 778888887753
No 28
>2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription repressor; NMR {Mus musculus} SCOP: a.59.1.1
Probab=27.34 E-value=21 Score=26.61 Aligned_cols=36 Identities=19% Similarity=0.258 Sum_probs=31.1
Q ss_pred CCCCHHHHhhhhcccccCC--CHHHHHHHHHHHHHhhh
Q psy14375 168 CPETPEEAKALIPSLECRF--EEEELRQILDDIQTKRS 203 (206)
Q Consensus 168 ~P~t~eEaraLIPSLe~r~--sdeeLe~ILd~L~k~R~ 203 (206)
-|.+.++|...+-..+.+| .++..++.|++|..|++
T Consensus 3 ~~~~~~dA~~YvnkVK~rF~d~p~vY~~FL~IL~~yk~ 40 (105)
T 2f05_A 3 DSVEFNNAISYVNKIKTRFLDHPEIYRSFLEILHTYQK 40 (105)
T ss_dssp SCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHh
Confidence 4667899999999999888 56889999999999975
No 29
>3kdw_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Bacteroides vulgatus atcc 8482} PDB: 3g6i_A*
Probab=26.84 E-value=56 Score=27.61 Aligned_cols=60 Identities=22% Similarity=0.352 Sum_probs=39.6
Q ss_pred HHHHHhcccCCChHHHHHHHHHHhcCCCChhhhHhhcccCCCCHHHHhhhhcccccCCCHHHHHHHHHHHHHhhhc
Q psy14375 129 LTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKRSL 204 (206)
Q Consensus 129 leYl~rFsk~~~~ea~e~vrelL~~~~L~kfEia~IaNL~P~t~eEaraLIPSLe~r~sdeeLe~ILd~L~k~R~f 204 (206)
.+|+...+++-+++-++.|...+. .+.+|-|..--..+||+| ++++=..|+.-|..-|.|
T Consensus 112 ~~~~a~L~~~Lt~eQie~Vkd~mT------------yg~v~~T~k~y~~mvP~L----teeek~~I~~~L~eARE~ 171 (221)
T 3kdw_A 112 FAFPADLSLYLDAKQIDAVKDGMT------------YGVVMVTYKATVDMIPTL----KEEEKAQIMAWLVEAREF 171 (221)
T ss_dssp THHHHHHTTTCCHHHHHHHHHHTT------------TTHHHHHHHHHHHHCTTC----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCHHHHHHHHcccc------------eeeehhhHHHHHHHcCcc----cHHHHHHHHHHHHHHHHH
Confidence 345555555555554454444432 344566777778899988 688888999998888876
No 30
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A 1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X* 3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A* 3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Probab=26.75 E-value=56 Score=22.19 Aligned_cols=33 Identities=15% Similarity=0.200 Sum_probs=19.3
Q ss_pred CCCHHHHhhhhcccc----cCCCHHHHHHHHHHHHHh
Q psy14375 169 PETPEEAKALIPSLE----CRFEEEELRQILDDIQTK 201 (206)
Q Consensus 169 P~t~eEaraLIPSLe----~r~sdeeLe~ILd~L~k~ 201 (206)
+.+.+++..++.... ..++=++.-.++..+...
T Consensus 48 ~~~~~~v~~~~~~~D~d~dG~I~f~EF~~~~~~l~~~ 84 (92)
T 3rm1_A 48 IKEQEVVDKVMETLDSNGDGECDFQEFMAFVAMITTA 84 (92)
T ss_dssp CCSHHHHHHHHHHHCTTSSSSBCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHH
Confidence 456777777776653 245555555555555443
No 31
>2rhf_A DNA helicase RECQ; HRDC, D. radiodurans, ATP-binding, hydrolase nucleotide-binding; HET: DNA; 1.10A {Deinococcus radiodurans}
Probab=26.28 E-value=47 Score=22.51 Aligned_cols=46 Identities=30% Similarity=0.276 Sum_probs=30.7
Q ss_pred CChhhhHhhcccCCCCHHHHhhhhcccccCCCHHHHHHHHHHHHHhh
Q psy14375 156 LHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKR 202 (206)
Q Consensus 156 L~kfEia~IaNL~P~t~eEaraLIPSLe~r~sdeeLe~ILd~L~k~R 202 (206)
+++..+..|+...|.|.+|+..+ +.+..+--+.-=+.+|+.|..|+
T Consensus 30 ~~d~~L~~iA~~~P~t~~eL~~i-~Gvg~~k~~~yG~~~l~~i~~~~ 75 (77)
T 2rhf_A 30 FTNATLEALAARQPRTLAELAEV-PGLGEKRIEAYGERILDAINTVL 75 (77)
T ss_dssp CCHHHHHHHHHHCCCSHHHHTTS-TTTCHHHHHHHHHHHHHHHHHHH
T ss_pred eCHHHHHHHHHhCCCCHHHHhhC-CCCCHHHHHHHHHHHHHHHHHHh
Confidence 55666778999999999998864 22211111233467888888875
No 32
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=25.69 E-value=25 Score=25.47 Aligned_cols=38 Identities=21% Similarity=0.173 Sum_probs=31.1
Q ss_pred hcccCCCCHHHHhhhhccccc---------CCCHHHHHHHHHHHHHh
Q psy14375 164 IANLCPETPEEAKALIPSLEC---------RFEEEELRQILDDIQTK 201 (206)
Q Consensus 164 IaNL~P~t~eEaraLIPSLe~---------r~sdeeLe~ILd~L~k~ 201 (206)
|+=+-|.+.+||+.+...|+. .+++++.++|+|.++-.
T Consensus 7 Ivv~~P~sy~Da~~I~d~Lr~~~~VvvNL~~ld~~~AqRivDF~sG~ 53 (87)
T 3p04_A 7 IVPVELHSFEDAQVIGGAFRDGDAVVFDMSLLSREEARRIVDFAAGL 53 (87)
T ss_dssp CEEEECSSGGGHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred EEEEecCcHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHhccc
Confidence 556789999999999888874 47899999999998743
No 33
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=25.42 E-value=94 Score=21.62 Aligned_cols=50 Identities=16% Similarity=0.143 Sum_probs=35.9
Q ss_pred HHHHHHHhcCCCChhhhHhhcccCCCCHHHHhhhhcccccCCCHHHHHHHHHHHH
Q psy14375 145 TSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQ 199 (206)
Q Consensus 145 e~vrelL~~~~L~kfEia~IaNL~P~t~eEaraLIPSLe~r~sdeeLe~ILd~L~ 199 (206)
..++++....||+..+.|..+++-+.++-.... . .+++.+.|.+|.+.+.
T Consensus 27 ~rLk~lR~~~glTq~eLA~~~GiS~~tis~iE~---G--~~~s~~~l~kIa~~L~ 76 (88)
T 3t76_A 27 NKLWKLLIDRDMKKGELREAVGVSKSTFAKLGK---N--ENVSLTVLLAICEYLN 76 (88)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT---T--CCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc---C--CCcCHHHHHHHHHHHC
Confidence 467777777899999999999987777654332 1 2367788888777663
No 34
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=24.99 E-value=55 Score=19.74 Aligned_cols=12 Identities=17% Similarity=0.313 Sum_probs=5.7
Q ss_pred CHHHHhhhhccc
Q psy14375 171 TPEEAKALIPSL 182 (206)
Q Consensus 171 t~eEaraLIPSL 182 (206)
+.++++.++-..
T Consensus 35 ~~~~~~~~~~~~ 46 (67)
T 1tiz_A 35 TQEDIVKFFEEI 46 (67)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 444555555433
No 35
>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*
Probab=24.71 E-value=63 Score=21.14 Aligned_cols=25 Identities=8% Similarity=0.280 Sum_probs=19.8
Q ss_pred hhcccccCCCHHHHHHHHHHHHHhh
Q psy14375 178 LIPSLECRFEEEELRQILDDIQTKR 202 (206)
Q Consensus 178 LIPSLe~r~sdeeLe~ILd~L~k~R 202 (206)
..|.....++++++..|+..|.+..
T Consensus 61 ~Mp~~~~~ls~~ei~~l~~yl~~~~ 85 (89)
T 1f1f_A 61 AMPGFNGRLSPLQIEDVAAYVVDQA 85 (89)
T ss_dssp TBCCCTTTSCHHHHHHHHHHHHHHH
T ss_pred CCCccccCCCHHHHHHHHHHHHHHh
Confidence 4556655789999999999998764
No 36
>1jw2_A Hemolysin expression modulating protein HHA; structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Escherichia coli} SCOP: a.23.5.1 PDB: 2jvp_A 2k5s_A
Probab=24.63 E-value=60 Score=22.91 Aligned_cols=32 Identities=25% Similarity=0.299 Sum_probs=25.4
Q ss_pred HHHHHhcccCCChHHHHHHHHHHhcCCCChhhh
Q psy14375 129 LTYTERFRKFKNRETITSVRNLLTQKKLHKFEL 161 (206)
Q Consensus 129 leYl~rFsk~~~~ea~e~vrelL~~~~L~kfEi 161 (206)
.+||-+|-++.+.++.+.|-+-+. ..|+..|+
T Consensus 9 ~d~L~k~Rrc~s~eTLEkv~e~~~-y~Lt~~el 40 (72)
T 1jw2_A 9 TDYLMRLRRCQTIDTLERVIEKNK-YELSDNEL 40 (72)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHH-HHSCHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhh-ccCCHHHH
Confidence 799999999999999888887654 45666554
No 37
>2zon_G Cytochrome C551; nitrite, electron transfer, denitrification, oxidoreductase/electron transport complex; HET: HEM; 1.70A {Achromobacter xylosoxidans}
Probab=24.51 E-value=59 Score=21.42 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=18.8
Q ss_pred hccccc-CCCHHHHHHHHHHHHHhh
Q psy14375 179 IPSLEC-RFEEEELRQILDDIQTKR 202 (206)
Q Consensus 179 IPSLe~-r~sdeeLe~ILd~L~k~R 202 (206)
.|.... .++++++..|+..|.+..
T Consensus 62 Mp~~~~~~ls~~ei~~l~~yl~~~~ 86 (87)
T 2zon_G 62 MPPRGGTAADEATLRAAVAYMMDAA 86 (87)
T ss_dssp BCGGGGCCCCHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhc
Confidence 455544 789999999999998764
No 38
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=24.39 E-value=55 Score=23.61 Aligned_cols=28 Identities=18% Similarity=0.458 Sum_probs=18.6
Q ss_pred CHHHHhhhhcccccCCCHHHHHHHHHHH
Q psy14375 171 TPEEAKALIPSLECRFEEEELRQILDDI 198 (206)
Q Consensus 171 t~eEaraLIPSLe~r~sdeeLe~ILd~L 198 (206)
+.+|++.++..+...+++++++.|+..+
T Consensus 101 ~~~El~~~l~~~g~~~~~~e~~~l~~~~ 128 (148)
T 2lmt_A 101 SPAELRFVMINLGEKVTDEEIDEMIREA 128 (148)
T ss_dssp CHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCccccHHHHHHHHHHh
Confidence 4566666666666667777777777655
No 39
>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A {Porphyra yezoensis} SCOP: a.3.1.1 PDB: 2zbo_A*
Probab=23.61 E-value=69 Score=20.66 Aligned_cols=25 Identities=12% Similarity=0.385 Sum_probs=19.6
Q ss_pred hhcccccCCCHHHHHHHHHHHHHhh
Q psy14375 178 LIPSLECRFEEEELRQILDDIQTKR 202 (206)
Q Consensus 178 LIPSLe~r~sdeeLe~ILd~L~k~R 202 (206)
..|.....++++++..|+..|.+..
T Consensus 57 ~Mp~~~~~ls~~ei~~l~~yl~~~~ 81 (85)
T 1gdv_A 57 AMPAFGGRLVDEDIEDAANYVLSQS 81 (85)
T ss_dssp TBCCCTTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHh
Confidence 4455545789999999999998764
No 40
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Probab=23.42 E-value=95 Score=19.67 Aligned_cols=13 Identities=15% Similarity=0.095 Sum_probs=7.1
Q ss_pred CCHHHHhhhhccc
Q psy14375 170 ETPEEAKALIPSL 182 (206)
Q Consensus 170 ~t~eEaraLIPSL 182 (206)
-+.++++.++-..
T Consensus 42 ~~~~~~~~~~~~~ 54 (81)
T 1c7v_A 42 LTDAEVEEAMKEA 54 (81)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHh
Confidence 4556666665444
No 41
>1c6r_A Cytochrome C6; electron transport protein, reduced state, photosynthesis; HET: HEM; 1.90A {Scenedesmus obliquus} SCOP: a.3.1.1 PDB: 1c6o_A* 1a2s_A* 1ced_A* 1ctj_A*
Probab=23.28 E-value=69 Score=20.98 Aligned_cols=26 Identities=12% Similarity=0.339 Sum_probs=20.4
Q ss_pred hhcccccCCCHHHHHHHHHHHHHhhh
Q psy14375 178 LIPSLECRFEEEELRQILDDIQTKRS 203 (206)
Q Consensus 178 LIPSLe~r~sdeeLe~ILd~L~k~R~ 203 (206)
..|.....++++++..|+..|.+..+
T Consensus 60 ~Mp~~~~~ls~~ei~~l~~yl~~~~~ 85 (89)
T 1c6r_A 60 AMPAWSGTLDDDEIAAVAAYVYDQAS 85 (89)
T ss_dssp TBCCCTTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHHcc
Confidence 45555557899999999999988754
No 42
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=23.05 E-value=76 Score=20.72 Aligned_cols=13 Identities=31% Similarity=0.322 Sum_probs=7.9
Q ss_pred CCHHHHhhhhccc
Q psy14375 170 ETPEEAKALIPSL 182 (206)
Q Consensus 170 ~t~eEaraLIPSL 182 (206)
-+.+|+..++...
T Consensus 42 ~~~~~~~~l~~~~ 54 (92)
T 2kn2_A 42 LTDEEVEQMIKEA 54 (92)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHh
Confidence 4566666666554
No 43
>1w2l_A Cytochrome oxidase subunit II; cytochrome C domain, oxidoreductase; HET: HEM; 1.3A {Rhodothermus marinus}
Probab=23.03 E-value=47 Score=22.28 Aligned_cols=24 Identities=17% Similarity=0.419 Sum_probs=18.2
Q ss_pred hhcccccCCCHHHHHHHHHHHHHh
Q psy14375 178 LIPSLECRFEEEELRQILDDIQTK 201 (206)
Q Consensus 178 LIPSLe~r~sdeeLe~ILd~L~k~ 201 (206)
..|.....++++++..|+..|.++
T Consensus 75 ~Mp~~~~~ls~~ei~~l~~yl~sl 98 (99)
T 1w2l_A 75 VMPASYASLSEREVAALIEFIKQQ 98 (99)
T ss_dssp CCCGGGGGCCHHHHHHHHHHHHTC
T ss_pred cCccccccCCHHHHHHHHHHHHHc
Confidence 345554568999999999988764
No 44
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=22.86 E-value=33 Score=24.18 Aligned_cols=9 Identities=44% Similarity=0.589 Sum_probs=3.3
Q ss_pred CHHHHHHHH
Q psy14375 187 EEEELRQIL 195 (206)
Q Consensus 187 sdeeLe~IL 195 (206)
+++++++|+
T Consensus 70 ~~~ei~~l~ 78 (100)
T 2lv7_A 70 NEVELEVII 78 (100)
T ss_dssp CTTTHHHHH
T ss_pred CHHHHHHHH
Confidence 333333333
No 45
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=22.80 E-value=1.2e+02 Score=20.74 Aligned_cols=32 Identities=19% Similarity=0.280 Sum_probs=21.6
Q ss_pred HHHHhhhhcccccCCCHHHHHHHHHHHHHhhh
Q psy14375 172 PEEAKALIPSLECRFEEEELRQILDDIQTKRS 203 (206)
Q Consensus 172 ~eEaraLIPSLe~r~sdeeLe~ILd~L~k~R~ 203 (206)
.+....|...+...+++++.+.|++.|..+.+
T Consensus 76 ~~~~~~l~~~~~~~l~~e~~~~i~~~i~~l~~ 107 (111)
T 1b0n_A 76 SEWEKLVRDAMTSGVSKKQFREFLDYQKWRKS 107 (111)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 34444454444246899999999998887643
No 46
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=22.80 E-value=85 Score=22.44 Aligned_cols=57 Identities=11% Similarity=0.063 Sum_probs=32.4
Q ss_pred HHHHHHHhcCCCChhhhHhhcccCCCCHHHHhhhhcccccCCCHHHHHHHHHHHHHhhh
Q psy14375 145 TSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKRS 203 (206)
Q Consensus 145 e~vrelL~~~~L~kfEia~IaNL~P~t~eEaraLIPSLe~r~sdeeLe~ILd~L~k~R~ 203 (206)
..+..+...++++..+.....+ .+......+.+...+ ..+++++++.|++.+..+.+
T Consensus 55 ~~l~~ia~~l~v~~~~l~~~~~-~~~~~~~~~~l~~~~-~~l~~~~~~~i~~~i~~l~~ 111 (126)
T 3ivp_A 55 QVLYDLVSLLNVSVDEFFLPAS-SQVKSTKRRQLENKI-DNFTDADLVIMESVADGIVK 111 (126)
T ss_dssp HHHHHHHHHHTCCSHHHHSCCC-CCCCCHHHHHHHHHT-TTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHhCCCc-cccchHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHH
Confidence 3333444444565555443222 222334444455555 47799999999998887754
No 47
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Probab=22.60 E-value=71 Score=22.71 Aligned_cols=28 Identities=21% Similarity=0.396 Sum_probs=16.0
Q ss_pred CHHHHhhhhcccccCCCHHHHHHHHHHH
Q psy14375 171 TPEEAKALIPSLECRFEEEELRQILDDI 198 (206)
Q Consensus 171 t~eEaraLIPSLe~r~sdeeLe~ILd~L 198 (206)
+.+|++.++..+...++++++++++..+
T Consensus 97 ~~~el~~~l~~~g~~~~~~~~~~~~~~~ 124 (143)
T 2obh_A 97 SFKNLKRVAKELGENLTDEELQEMIDEA 124 (143)
T ss_dssp CHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 3455555555554456666666666554
No 48
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein, solution structure, backbone dynamic, structural genomics; NMR {Homo sapiens}
Probab=22.23 E-value=63 Score=19.78 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=9.0
Q ss_pred HHhhhhcccccCCCHHHHHHHHH
Q psy14375 174 EAKALIPSLECRFEEEELRQILD 196 (206)
Q Consensus 174 EaraLIPSLe~r~sdeeLe~ILd 196 (206)
|++.++-.+...+++++++.++.
T Consensus 27 el~~~l~~~~~~~~~~~~~~~~~ 49 (71)
T 2b1u_A 27 ELRRAMAGLGQPLPQEELDAMIR 49 (71)
T ss_dssp HHHHHGGGTTCSSCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHH
Confidence 33333333333344444444443
No 49
>3dr0_A Cytochrome C6; photosynthesis, cyanobacteria, electron transfer electron transport, heme, iron, metal-binding, thylakoid; HET: HEM; 1.23A {Synechococcus SP}
Probab=22.09 E-value=67 Score=20.98 Aligned_cols=25 Identities=12% Similarity=0.373 Sum_probs=19.7
Q ss_pred hhcccccCCCHHHHHHHHHHHHHhh
Q psy14375 178 LIPSLECRFEEEELRQILDDIQTKR 202 (206)
Q Consensus 178 LIPSLe~r~sdeeLe~ILd~L~k~R 202 (206)
..|.....++++++..|+..|.++-
T Consensus 64 ~Mp~~~~~ls~~ei~~l~~yl~~l~ 88 (93)
T 3dr0_A 64 AMPAFGGRLSDADIANVAAYIADQA 88 (93)
T ss_dssp TBCCCBTTBCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 4555656789999999999998764
No 50
>3dmi_A Cytochrome C6; electron transport, transit peptide; HET: HEM; 1.50A {Phaeodactylum tricornutum} SCOP: a.3.1.1
Probab=21.94 E-value=74 Score=20.71 Aligned_cols=24 Identities=17% Similarity=0.416 Sum_probs=19.4
Q ss_pred hhcccccCCCHHHHHHHHHHHHHh
Q psy14375 178 LIPSLECRFEEEELRQILDDIQTK 201 (206)
Q Consensus 178 LIPSLe~r~sdeeLe~ILd~L~k~ 201 (206)
..|.....+++++|..|+..|.+.
T Consensus 59 ~Mp~~~~~ls~~ei~~l~~yl~~~ 82 (88)
T 3dmi_A 59 AMPAFGGRLSDEEIANVAAYVLAS 82 (88)
T ss_dssp TBCCCTTTSCHHHHHHHHHHHHHH
T ss_pred CCCCcCCCCCHHHHHHHHHHHHHH
Confidence 455665579999999999999876
No 51
>2yb5_A FUSC, putative fusidic acid resistance protein; translation, antibiotic resistance, zinc finger; 2.10A {Staphylococcus aureus}
Probab=21.34 E-value=42 Score=28.25 Aligned_cols=72 Identities=14% Similarity=0.348 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHHHHhcccCCChHHHHHHHHHHhcCCCChhhhHhhcccCCCCHHHHhhhhcccc-cCCCHHHHHHHHHHH
Q psy14375 120 EFSEVFQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLE-CRFEEEELRQILDDI 198 (206)
Q Consensus 120 els~v~~kTleYl~rFsk~~~~ea~e~vrelL~~~~L~kfEia~IaNL~P~t~eEaraLIPSLe-~r~sdeeLe~ILd~L 198 (206)
+.+.+=+++..=++.+.. .++..++.++.+... .|.++.|.-.+|.+.|+..+. .+++.++.+.+|+.|
T Consensus 11 qYn~IK~q~~~L~~~~~t-nD~~vi~a~k~~~~~---------kI~~~f~~~~~e~~~lL~~i~~~~l~~~~~e~~L~~L 80 (215)
T 2yb5_A 11 KFVKVKQLVYQLIKLYRT-NDMNSHKTQKDFLLN---------EINDIFKEKDIDISDFITSIDDVKLTKKKAEHLLNEL 80 (215)
T ss_dssp HHHHHHHHHHHHHHHHHS-SCTTTTHHHHHHHHH---------HHHHHHHTTTCCCTTHHHHHCCTTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH---------HHHHHcccCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 445566666666777777 777777777766431 234444444444555555333 245777777777777
Q ss_pred HHh
Q psy14375 199 QTK 201 (206)
Q Consensus 199 ~k~ 201 (206)
..|
T Consensus 81 k~y 83 (215)
T 2yb5_A 81 KVY 83 (215)
T ss_dssp GGG
T ss_pred HHH
Confidence 766
No 52
>3ph2_B Cytochrome C6; photosynthesis, cytochrome F, photosys thylakoid; HET: HEM; 1.40A {Phormidium laminosum} SCOP: a.3.1.1 PDB: 2v08_A* 1c6s_A*
Probab=21.32 E-value=78 Score=20.42 Aligned_cols=24 Identities=8% Similarity=0.356 Sum_probs=19.2
Q ss_pred hhcccccCCCHHHHHHHHHHHHHh
Q psy14375 178 LIPSLECRFEEEELRQILDDIQTK 201 (206)
Q Consensus 178 LIPSLe~r~sdeeLe~ILd~L~k~ 201 (206)
..|.....++++++..|+..|.+.
T Consensus 58 ~Mp~~~~~ls~~ei~~l~~yl~~~ 81 (86)
T 3ph2_B 58 GMPAFKGRLTDDQIAAVAAYVLDQ 81 (86)
T ss_dssp TBCCCTTTSCHHHHHHHHHHHHHH
T ss_pred CCCCcccCCCHHHHHHHHHHHHHh
Confidence 455565578999999999998875
No 53
>1cno_A Cytochrome C552; electron transport, pseudomonas nautica, X RAY structure, multiwavelength anomalous dispersion, heme; HET: HEC; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.1
Probab=20.90 E-value=48 Score=22.03 Aligned_cols=25 Identities=0% Similarity=0.153 Sum_probs=18.8
Q ss_pred hhcccccCCCHHHHHHHHHHHHHhh
Q psy14375 178 LIPSLECRFEEEELRQILDDIQTKR 202 (206)
Q Consensus 178 LIPSLe~r~sdeeLe~ILd~L~k~R 202 (206)
..|.....+++++|..|+..|.++.
T Consensus 59 ~Mp~~~~~ls~~ei~~l~~yl~~l~ 83 (87)
T 1cno_A 59 VMQGQATALSDADIANLAAYYASNP 83 (87)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHSC
T ss_pred ccHHHHhhCCHHHHHHHHHHHHhCC
Confidence 4555545689999999999888764
No 54
>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron transport protein (cytochrome); HET: HEM; 1.90A {Chlamydomonas reinhardtii} SCOP: a.3.1.1 PDB: 1cyj_A*
Probab=20.73 E-value=83 Score=20.67 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=19.9
Q ss_pred hhcccccCCCHHHHHHHHHHHHHhh
Q psy14375 178 LIPSLECRFEEEELRQILDDIQTKR 202 (206)
Q Consensus 178 LIPSLe~r~sdeeLe~ILd~L~k~R 202 (206)
..|.....++++++..|+..|.+..
T Consensus 59 ~Mp~~~~~ls~~ei~~l~~yl~~~~ 83 (90)
T 1cyi_A 59 AMPAWADRLSEEEIQAVAEYVFKQA 83 (90)
T ss_dssp TBCCCTTTSCHHHHHHHHHHHHHHH
T ss_pred CCCcccccCCHHHHHHHHHHHHhcc
Confidence 4555655789999999999998764
No 55
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=20.70 E-value=1.5e+02 Score=22.50 Aligned_cols=62 Identities=8% Similarity=0.114 Sum_probs=42.5
Q ss_pred cccCCChHHHHHHHHHHhcC--CCChhhhHhhcccCCCCHHHHhhhhccc-------ccCCCHHHHHHHHH
Q psy14375 135 FRKFKNRETITSVRNLLTQK--KLHKFELAAIANLCPETPEEAKALIPSL-------ECRFEEEELRQILD 196 (206)
Q Consensus 135 Fsk~~~~ea~e~vrelL~~~--~L~kfEia~IaNL~P~t~eEaraLIPSL-------e~r~sdeeLe~ILd 196 (206)
|...+..+..+.+...+... .+++..+..|+..++.++.+++.++-.+ ...++.++++++|.
T Consensus 171 l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~~~~It~~~v~~~l~ 241 (242)
T 3bos_A 171 LQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQRKLTIPFVKEMLR 241 (242)
T ss_dssp CCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHT
T ss_pred eCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHhh
Confidence 44555566666676666544 4566666679999999999888776443 23588888888764
No 56
>2c1d_B SOXX; sulfur oxidation, cytochrome-C-type, oxidoreductase; HET: HEC; 1.92A {Paracoccus pantotrophus}
Probab=20.27 E-value=50 Score=24.14 Aligned_cols=27 Identities=15% Similarity=0.171 Sum_probs=20.9
Q ss_pred hhhhcccccCCCHHHHHHHHHHHHHhh
Q psy14375 176 KALIPSLECRFEEEELRQILDDIQTKR 202 (206)
Q Consensus 176 raLIPSLe~r~sdeeLe~ILd~L~k~R 202 (206)
+.+.|.+...++++++..|+..|.+++
T Consensus 110 ~~~Mp~~~~~Ls~~ei~~l~aYl~sl~ 136 (137)
T 2c1d_B 110 KAGAEPLAPILNAQQIEDVVAFLVTLK 136 (137)
T ss_dssp SBCCSSCCCSSCHHHHHHHHHHHHTCC
T ss_pred cccChhhhcCCCHHHHHHHHHHHHHcc
Confidence 345566666799999999999998764
No 57
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A
Probab=20.20 E-value=1.1e+02 Score=20.52 Aligned_cols=15 Identities=13% Similarity=0.169 Sum_probs=11.4
Q ss_pred cccHHHHHHHHHHHH
Q psy14375 95 TLLISEVHMLLQHRK 109 (206)
Q Consensus 95 ~LT~sEV~~IL~~~~ 109 (206)
.+|..|+..++....
T Consensus 6 ~~~~~ei~~~~~~~D 20 (109)
T 3fs7_A 6 ILSAKDIESALSSCQ 20 (109)
T ss_dssp TSCHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHhcC
Confidence 467888888887764
No 58
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=20.07 E-value=82 Score=21.27 Aligned_cols=12 Identities=33% Similarity=0.404 Sum_probs=5.8
Q ss_pred CHHHHhhhhccc
Q psy14375 171 TPEEAKALIPSL 182 (206)
Q Consensus 171 t~eEaraLIPSL 182 (206)
+.+|++.++...
T Consensus 63 ~~~e~~~l~~~~ 74 (94)
T 2kz2_A 63 TDEEVDEMIREA 74 (94)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHh
Confidence 445555555433
Done!