Your job contains 1 sequence.
>psy14375
MVCLGLGQNKEKTVSFLLSTSRISPGDCVVSLFPRKIQPKSNQIKSALSKSVPPRTPYSD
RVSIGYIIMTHVLDQVVEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQE
FSEVFQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIP
SLECRFEEEELRQILDDIQTKRSLQY
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy14375
(206 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0263757 - symbol:Rpb4 species:7227 "Drosophila mel... 500 7.7e-48 1
ZFIN|ZDB-GENE-040714-2 - symbol:polr2d "polymerase (RNA) ... 479 1.3e-45 1
UNIPROTKB|F1P2S1 - symbol:POLR2D "Uncharacterized protein... 475 3.4e-45 1
UNIPROTKB|Q1JQ91 - symbol:POLR2D "Polymerase (RNA) II (DN... 471 9.1e-45 1
UNIPROTKB|E2RPH1 - symbol:POLR2D "Uncharacterized protein... 471 9.1e-45 1
UNIPROTKB|O15514 - symbol:POLR2D "DNA-directed RNA polyme... 471 9.1e-45 1
MGI|MGI:1916491 - symbol:Polr2d "polymerase (RNA) II (DNA... 471 9.1e-45 1
RGD|1308565 - symbol:Polr2d "polymerase (RNA) II (DNA dir... 471 9.1e-45 1
UNIPROTKB|E9PB93 - symbol:POLR2D "DNA-directed RNA polyme... 372 2.8e-34 1
WB|WBGene00018391 - symbol:rpb-4 species:6239 "Caenorhabd... 362 3.2e-33 1
UNIPROTKB|E9PHV4 - symbol:POLR2D "DNA-directed RNA polyme... 233 6.8e-30 2
DICTYBASE|DDB_G0282739 - symbol:rpb4 "DNA-directed RNA po... 244 1.0e-20 1
TAIR|locus:2178158 - symbol:NRPB4 species:3702 "Arabidops... 223 1.7e-18 1
POMBASE|SPBC337.14 - symbol:rpb4 "DNA-directed RNA polyme... 199 6.0e-16 1
UNIPROTKB|G4MS77 - symbol:MGG_04508 "Uncharacterized prot... 195 1.6e-15 1
SGD|S000003676 - symbol:RPB4 "RNA polymerase II subunit B... 148 6.8e-13 2
ASPGD|ASPL0000040846 - symbol:AN10362 species:162425 "Eme... 156 2.2e-11 1
GENEDB_PFALCIPARUM|PFB0245c - symbol:PFB0245c "DNA-direct... 141 8.4e-10 1
UNIPROTKB|O96150 - symbol:PFB0245c "DNA-directed RNA poly... 141 8.4e-10 1
UNIPROTKB|I3LMY5 - symbol:POLR2D "Uncharacterized protein... 133 5.9e-09 1
>FB|FBgn0263757 [details] [associations]
symbol:Rpb4 species:7227 "Drosophila melanogaster"
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS;IDA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=ISS;IDA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISS;IDA] [GO:0016591 "DNA-directed
RNA polymerase II, holoenzyme" evidence=ISS] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=IDA] [GO:0043966 "histone H3 acetylation" evidence=IDA]
[GO:0043967 "histone H4 acetylation" evidence=IDA] [GO:0003682
"chromatin binding" evidence=IDA] [GO:0005671 "Ada2/Gcn5/Ada3
transcription activator complex" evidence=IDA] [GO:0007095 "mitotic
G2 DNA damage checkpoint" evidence=IGI] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR005574 InterPro:IPR010997 Pfam:PF03874
EMBL:AE014297 GO:GO:0007095 GO:GO:0022008 GO:GO:0000166
GO:GO:0008283 GO:GO:0003682 GO:GO:0006366 GO:GO:0043967
eggNOG:COG5114 GO:GO:0005671 GO:GO:0005700 SUPFAM:SSF47819
GO:GO:0043966 GO:GO:0003899 GO:GO:0005665 HSSP:O15514 KO:K03012
InterPro:IPR006590 SMART:SM00657 EMBL:AF544019 EMBL:AF544020
EMBL:BT022168 EMBL:BT023308 EMBL:BT023309 RefSeq:NP_001014633.2
UniGene:Dm.13710 ProteinModelPortal:Q9VEA5 SMR:Q9VEA5 IntAct:Q9VEA5
MINT:MINT-764159 STRING:Q9VEA5 PRIDE:Q9VEA5
EnsemblMetazoa:FBtr0310379 GeneID:326128 KEGG:dme:Dmel_CG33520
UCSC:CG33520-RA CTD:326128 FlyBase:FBgn0263757
GeneTree:ENSGT00390000004912 InParanoid:Q9VEA5 OMA:SQLVFPK
OrthoDB:EOG4FXPPS GenomeRNAi:326128 NextBio:847197 Bgee:Q9VEA5
Uniprot:Q9VEA5
Length = 139
Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
Identities = 100/131 (76%), Positives = 107/131 (81%)
Query: 76 VVEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTXXXXXXXXXXFSEVFQKTLTYTERF 135
+V+EDA DLQFPKEFENAETLLISEVHMLL HRK FSEVF KT YT+ F
Sbjct: 9 MVDEDAADLQFPKEFENAETLLISEVHMLLDHRKRQNESADEEQEFSEVFMKTYAYTDSF 68
Query: 136 RKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQIL 195
RKFKN+ETI S R+LL QKKLHKFELAA+ NLCPE PEEAKALIPSLE RFE+EELRQIL
Sbjct: 69 RKFKNKETIMSARSLLMQKKLHKFELAALGNLCPEAPEEAKALIPSLEGRFEDEELRQIL 128
Query: 196 DDIQTKRSLQY 206
DDI TKRSLQY
Sbjct: 129 DDIGTKRSLQY 139
>ZFIN|ZDB-GENE-040714-2 [details] [associations]
symbol:polr2d "polymerase (RNA) II (DNA directed)
polypeptide D" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
InterPro:IPR005574 InterPro:IPR010997 Pfam:PF03874
ZFIN:ZDB-GENE-040714-2 GO:GO:0000166 GO:GO:0006351 SUPFAM:SSF47819
GO:GO:0003899 InterPro:IPR006590 SMART:SM00657
GeneTree:ENSGT00390000004912 EMBL:CU638696 IPI:IPI00498358
Ensembl:ENSDART00000108718 Bgee:F1RDX0 Uniprot:F1RDX0
Length = 145
Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
Identities = 97/130 (74%), Positives = 104/130 (80%)
Query: 77 VEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTXXXXXXXXXXFSEVFQKTLTYTERFR 136
VEEDA L FPKEFENAETLL SEVHMLL+HRK SEVF KTL YT RF
Sbjct: 16 VEEDASQLMFPKEFENAETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLNYTARFS 75
Query: 137 KFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
+FKNRETI SVR+LL QKKLHKFELA++ANLCPE EEAKALIPSLE RFE+EEL+QILD
Sbjct: 76 RFKNRETIASVRSLLLQKKLHKFELASLANLCPEAAEEAKALIPSLEGRFEDEELQQILD 135
Query: 197 DIQTKRSLQY 206
DIQTKRS QY
Sbjct: 136 DIQTKRSFQY 145
>UNIPROTKB|F1P2S1 [details] [associations]
symbol:POLR2D "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0004672 "protein kinase activity" evidence=IEA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR005574 InterPro:IPR010997 Pfam:PF03874
GO:GO:0000166 GO:GO:0004672 GO:GO:0006366 SUPFAM:SSF47819
GO:GO:0003899 GO:GO:0005665 InterPro:IPR006590 SMART:SM00657
GeneTree:ENSGT00390000004912 OMA:SQLVFPK EMBL:AADN02024422
IPI:IPI00592989 Ensembl:ENSGALT00000003200 Uniprot:F1P2S1
Length = 147
Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
Identities = 97/130 (74%), Positives = 103/130 (79%)
Query: 77 VEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTXXXXXXXXXXFSEVFQKTLTYTERFR 136
VEEDA L FPKEFE AETLL SEVHMLL+HRK SEVF KTL YT RF
Sbjct: 18 VEEDASQLVFPKEFETAETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLNYTARFS 77
Query: 137 KFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
+FKNRETI SVR+LL QKKLHKFELA +ANLCPET EEAKALIPSLE RFE+EEL+QILD
Sbjct: 78 RFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEEAKALIPSLEGRFEDEELQQILD 137
Query: 197 DIQTKRSLQY 206
DIQTKRS QY
Sbjct: 138 DIQTKRSFQY 147
>UNIPROTKB|Q1JQ91 [details] [associations]
symbol:POLR2D "Polymerase (RNA) II (DNA directed)
polypeptide D" species:9913 "Bos taurus" [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA]
[GO:0004672 "protein kinase activity" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR005574
InterPro:IPR010997 Pfam:PF03874 GO:GO:0000166 GO:GO:0004672
GO:GO:0006366 SUPFAM:SSF47819 GO:GO:0003899 GO:GO:0005665
eggNOG:COG5250 KO:K03012 InterPro:IPR006590 SMART:SM00657
GeneTree:ENSGT00390000004912 OMA:SQLVFPK CTD:5433
HOGENOM:HOG000195281 HOVERGEN:HBG002800 OrthoDB:EOG444KMN
EMBL:DAAA02003881 EMBL:BC116155 IPI:IPI00692541
RefSeq:NP_001069926.1 UniGene:Bt.4253 SMR:Q1JQ91 STRING:Q1JQ91
Ensembl:ENSBTAT00000013496 GeneID:617422 KEGG:bta:617422
InParanoid:Q1JQ91 NextBio:20900656 Uniprot:Q1JQ91
Length = 142
Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
Identities = 96/130 (73%), Positives = 103/130 (79%)
Query: 77 VEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTXXXXXXXXXXFSEVFQKTLTYTERFR 136
VEEDA L FPKEFE AETLL SEVHMLL+HRK SEVF KTL YT RF
Sbjct: 13 VEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLNYTARFS 72
Query: 137 KFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
+FKNRETI SVR+LL QKKLHKFELA +ANLCPET EE+KALIPSLE RFE+EEL+QILD
Sbjct: 73 RFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGRFEDEELQQILD 132
Query: 197 DIQTKRSLQY 206
DIQTKRS QY
Sbjct: 133 DIQTKRSFQY 142
>UNIPROTKB|E2RPH1 [details] [associations]
symbol:POLR2D "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=IEA] [GO:0004672 "protein kinase
activity" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR005574 InterPro:IPR010997 Pfam:PF03874
GO:GO:0000166 GO:GO:0004672 GO:GO:0006366 SUPFAM:SSF47819
GO:GO:0003899 GO:GO:0005665 KO:K03012 InterPro:IPR006590
SMART:SM00657 GeneTree:ENSGT00390000004912 OMA:SQLVFPK CTD:5433
EMBL:AAEX03011834 RefSeq:XP_540983.2 ProteinModelPortal:E2RPH1
Ensembl:ENSCAFT00000006918 GeneID:483863 KEGG:cfa:483863
Uniprot:E2RPH1
Length = 142
Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
Identities = 96/130 (73%), Positives = 103/130 (79%)
Query: 77 VEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTXXXXXXXXXXFSEVFQKTLTYTERFR 136
VEEDA L FPKEFE AETLL SEVHMLL+HRK SEVF KTL YT RF
Sbjct: 13 VEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLNYTARFS 72
Query: 137 KFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
+FKNRETI SVR+LL QKKLHKFELA +ANLCPET EE+KALIPSLE RFE+EEL+QILD
Sbjct: 73 RFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGRFEDEELQQILD 132
Query: 197 DIQTKRSLQY 206
DIQTKRS QY
Sbjct: 133 DIQTKRSFQY 142
>UNIPROTKB|O15514 [details] [associations]
symbol:POLR2D "DNA-directed RNA polymerase II subunit RPB4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IMP] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IDA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IDA;IMP;TAS] [GO:0004672 "protein
kinase activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair"
evidence=TAS] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=TAS] [GO:0006289
"nucleotide-excision repair" evidence=TAS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=TAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=TAS] [GO:0008380 "RNA
splicing" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0006468 "protein phosphorylation" evidence=IDA]
Reactome:REACT_216 Reactome:REACT_71 InterPro:IPR005574
InterPro:IPR010997 Pfam:PF03874 Reactome:REACT_116125 GO:GO:0016032
GO:GO:0000166 Reactome:REACT_1675 GO:GO:0006468 GO:GO:0006368
GO:GO:0006367 GO:GO:0000398 Reactome:REACT_1788 SUPFAM:SSF47819
GO:GO:0006370 GO:GO:0050434 GO:GO:0006283 Reactome:REACT_1892
GO:GO:0003899 GO:GO:0005665 eggNOG:COG5250 KO:K03012
InterPro:IPR006590 SMART:SM00657 OMA:SQLVFPK EMBL:U89387
EMBL:U85510 EMBL:BC017205 EMBL:BC093795 EMBL:BC093797
IPI:IPI00007283 RefSeq:NP_004796.1 UniGene:Hs.715348 PDB:2C35
PDBsum:2C35 ProteinModelPortal:O15514 SMR:O15514 DIP:DIP-32912N
IntAct:O15514 STRING:O15514 PhosphoSite:O15514 PaxDb:O15514
PeptideAtlas:O15514 PRIDE:O15514 DNASU:5433 Ensembl:ENST00000272645
GeneID:5433 KEGG:hsa:5433 UCSC:uc002tpj.3 CTD:5433
GeneCards:GC02M128620 HGNC:HGNC:9191 HPA:HPA046092 MIM:606017
neXtProt:NX_O15514 PharmGKB:PA33511 HOGENOM:HOG000195281
HOVERGEN:HBG002800 InParanoid:O15514 OrthoDB:EOG444KMN
PhylomeDB:O15514 ChiTaRS:POLR2D EvolutionaryTrace:O15514
GenomeRNAi:5433 NextBio:21021 ArrayExpress:O15514 Bgee:O15514
CleanEx:HS_POLR2D Genevestigator:O15514 GermOnline:ENSG00000144231
Uniprot:O15514
Length = 142
Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
Identities = 96/130 (73%), Positives = 103/130 (79%)
Query: 77 VEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTXXXXXXXXXXFSEVFQKTLTYTERFR 136
VEEDA L FPKEFE AETLL SEVHMLL+HRK SEVF KTL YT RF
Sbjct: 13 VEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLNYTARFS 72
Query: 137 KFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
+FKNRETI SVR+LL QKKLHKFELA +ANLCPET EE+KALIPSLE RFE+EEL+QILD
Sbjct: 73 RFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGRFEDEELQQILD 132
Query: 197 DIQTKRSLQY 206
DIQTKRS QY
Sbjct: 133 DIQTKRSFQY 142
>MGI|MGI:1916491 [details] [associations]
symbol:Polr2d "polymerase (RNA) II (DNA directed)
polypeptide D" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0006468 "protein phosphorylation" evidence=ISO]
[GO:0044237 "cellular metabolic process" evidence=IEA]
InterPro:IPR005574 InterPro:IPR010997 Pfam:PF03874 MGI:MGI:1916491
GO:GO:0000166 GO:GO:0004672 GO:GO:0006366 SUPFAM:SSF47819
GO:GO:0003899 GO:GO:0005665 eggNOG:COG5250 KO:K03012
InterPro:IPR006590 SMART:SM00657 GeneTree:ENSGT00390000004912
OMA:SQLVFPK CTD:5433 HOGENOM:HOG000195281 HOVERGEN:HBG002800
OrthoDB:EOG444KMN EMBL:AK011600 EMBL:BC004810 IPI:IPI00268215
RefSeq:NP_081278.1 RefSeq:NP_081377.1 UniGene:Mm.279898
ProteinModelPortal:Q9D7M8 SMR:Q9D7M8 STRING:Q9D7M8
PhosphoSite:Q9D7M8 REPRODUCTION-2DPAGE:Q9D7M8 PaxDb:Q9D7M8
PRIDE:Q9D7M8 Ensembl:ENSMUST00000025106 GeneID:69241 KEGG:mmu:69241
UCSC:uc008eim.1 InParanoid:Q9D7M8 NextBio:328957 Bgee:Q9D7M8
CleanEx:MM_POLR2D Genevestigator:Q9D7M8
GermOnline:ENSMUSG00000024258 Uniprot:Q9D7M8
Length = 142
Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
Identities = 96/130 (73%), Positives = 103/130 (79%)
Query: 77 VEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTXXXXXXXXXXFSEVFQKTLTYTERFR 136
VEEDA L FPKEFE AETLL SEVHMLL+HRK SEVF KTL YT RF
Sbjct: 13 VEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLNYTARFS 72
Query: 137 KFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
+FKNRETI SVR+LL QKKLHKFELA +ANLCPET EE+KALIPSLE RFE+EEL+QILD
Sbjct: 73 RFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGRFEDEELQQILD 132
Query: 197 DIQTKRSLQY 206
DIQTKRS QY
Sbjct: 133 DIQTKRSFQY 142
>RGD|1308565 [details] [associations]
symbol:Polr2d "polymerase (RNA) II (DNA directed) polypeptide D"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISO] [GO:0004672 "protein kinase activity"
evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA;ISO]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA;ISO] [GO:0006468 "protein phosphorylation"
evidence=ISO] InterPro:IPR005574 InterPro:IPR010997 Pfam:PF03874
RGD:1308565 GO:GO:0000166 GO:GO:0004672 GO:GO:0006366
SUPFAM:SSF47819 GO:GO:0003899 EMBL:CH473974 GO:GO:0005665 KO:K03012
InterPro:IPR006590 SMART:SM00657 GeneTree:ENSGT00390000004912
OMA:SQLVFPK CTD:5433 OrthoDB:EOG444KMN IPI:IPI00360244
RefSeq:NP_001102356.1 UniGene:Rn.128728 SMR:D4A259
Ensembl:ENSRNOT00000021738 GeneID:364834 KEGG:rno:364834
UCSC:RGD:1308565 NextBio:686138 Uniprot:D4A259
Length = 142
Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
Identities = 96/130 (73%), Positives = 103/130 (79%)
Query: 77 VEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTXXXXXXXXXXFSEVFQKTLTYTERFR 136
VEEDA L FPKEFE AETLL SEVHMLL+HRK SEVF KTL YT RF
Sbjct: 13 VEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLNYTARFS 72
Query: 137 KFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILD 196
+FKNRETI SVR+LL QKKLHKFELA +ANLCPET EE+KALIPSLE RFE+EEL+QILD
Sbjct: 73 RFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGRFEDEELQQILD 132
Query: 197 DIQTKRSLQY 206
DIQTKRS QY
Sbjct: 133 DIQTKRSFQY 142
>UNIPROTKB|E9PB93 [details] [associations]
symbol:POLR2D "DNA-directed RNA polymerase II subunit RPB4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR005574 InterPro:IPR010997 Pfam:PF03874
GO:GO:0000166 GO:GO:0006351 SUPFAM:SSF47819 GO:GO:0003899
InterPro:IPR006590 SMART:SM00657 HGNC:HGNC:9191 ChiTaRS:POLR2D
EMBL:AC006011 EMBL:AC012306 IPI:IPI00915935
ProteinModelPortal:E9PB93 SMR:E9PB93 PRIDE:E9PB93
Ensembl:ENST00000409698 ArrayExpress:E9PB93 Bgee:E9PB93
Uniprot:E9PB93
Length = 104
Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
Identities = 75/104 (72%), Positives = 82/104 (78%)
Query: 103 MLLQHRKTXXXXXXXXXXFSEVFQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELA 162
MLL+HRK SEVF KTL YT RF +FKNRETI SVR+LL QKKLHKFELA
Sbjct: 1 MLLEHRKQQNESAEDEQELSEVFMKTLNYTARFSRFKNRETIASVRSLLLQKKLHKFELA 60
Query: 163 AIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKRSLQY 206
+ANLCPET EE+KALIPSLE RFE+EEL+QILDDIQTKRS QY
Sbjct: 61 CLANLCPETAEESKALIPSLEGRFEDEELQQILDDIQTKRSFQY 104
>WB|WBGene00018391 [details] [associations]
symbol:rpb-4 species:6239 "Caenorhabditis elegans"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] InterPro:IPR005574 InterPro:IPR010997 Pfam:PF03874
GO:GO:0009792 GO:GO:0000166 GO:GO:0006351 SUPFAM:SSF47819
GO:GO:0003899 EMBL:FO080417 eggNOG:COG5250 KO:K03012
InterPro:IPR006590 SMART:SM00657 GeneTree:ENSGT00390000004912
OMA:SQLVFPK HOGENOM:HOG000195281 RefSeq:NP_495544.2
ProteinModelPortal:O02092 SMR:O02092 STRING:O02092 MEROPS:S16.A05
PaxDb:O02092 EnsemblMetazoa:F43E2.2 GeneID:174208
KEGG:cel:CELE_F43E2.2 UCSC:F43E2.2 CTD:174208 WormBase:F43E2.2
InParanoid:O02092 NextBio:883013 Uniprot:O02092
Length = 144
Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
Identities = 72/134 (53%), Positives = 93/134 (69%)
Query: 74 DQVVEEDAGDLQFPKEFENA--ETLLISEVHMLLQHRKTXXXXXXXXXXFSEVFQKTLTY 131
D VEEDA + +FPKEFE + LL +EV++LL+HR+ SEVF KTL Y
Sbjct: 11 DGQVEEDAAECKFPKEFETTTCDALLTAEVYLLLEHRRQSSESKDEIEEMSEVFIKTLNY 70
Query: 132 TERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEEL 191
R +FKNRETI +VR + ++K LHKFE+A IANLCPE EEAKAL+PSLE + EE EL
Sbjct: 71 ARRMSRFKNRETIRAVRAIFSEKHLHKFEVAQIANLCPENAEEAKALVPSLENKIEESEL 130
Query: 192 RQILDDIQTKRSLQ 205
++L D+Q+KR+ Q
Sbjct: 131 EEVLKDLQSKRTFQ 144
>UNIPROTKB|E9PHV4 [details] [associations]
symbol:POLR2D "DNA-directed RNA polymerase II subunit RPB4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR005574 InterPro:IPR010997 Pfam:PF03874
GO:GO:0000166 GO:GO:0006351 SUPFAM:SSF47819 GO:GO:0003899
InterPro:IPR006590 SMART:SM00657 HGNC:HGNC:9191 ChiTaRS:POLR2D
EMBL:AC006011 EMBL:AC012306 IPI:IPI00917118
ProteinModelPortal:E9PHV4 SMR:E9PHV4 PRIDE:E9PHV4
Ensembl:ENST00000409955 ArrayExpress:E9PHV4 Bgee:E9PHV4
Uniprot:E9PHV4
Length = 110
Score = 233 (87.1 bits), Expect = 6.8e-30, Sum P(2) = 6.8e-30
Identities = 49/74 (66%), Positives = 52/74 (70%)
Query: 77 VEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTXXXXXXXXXXFSEVFQKTLTYTERFR 136
VEEDA L FPKEFE AETLL SEVHMLL+HRK SEVF KTL YT RF
Sbjct: 13 VEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLNYTARFS 72
Query: 137 KFKNRETITSVRNL 150
+FKNRETI SVR+L
Sbjct: 73 RFKNRETIASVRSL 86
Score = 113 (44.8 bits), Expect = 6.8e-30, Sum P(2) = 6.8e-30
Identities = 24/33 (72%), Positives = 27/33 (81%)
Query: 174 EAKALIPSLECRFEEEELRQILDDIQTKRSLQY 206
E A + SLE RFE+EEL+QILDDIQTKRS QY
Sbjct: 78 ETIASVRSLEGRFEDEELQQILDDIQTKRSFQY 110
>DICTYBASE|DDB_G0282739 [details] [associations]
symbol:rpb4 "DNA-directed RNA polymerase II subunit
4" species:44689 "Dictyostelium discoideum" [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IGI;ISS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA;IGI;ISS] [GO:0044237 "cellular metabolic
process" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=ISS]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR005574
InterPro:IPR010997 Pfam:PF03874 dictyBase:DDB_G0282739
GO:GO:0005737 GO:GO:0000166 EMBL:AAFI02000047
GenomeReviews:CM000152_GR GO:GO:0006366 SUPFAM:SSF47819
GO:GO:0003899 GO:GO:0005665 RefSeq:XP_640235.1 HSSP:O15514
ProteinModelPortal:Q54S04 STRING:Q54S04 EnsemblProtists:DDB0216294
GeneID:8623774 KEGG:ddi:DDB_G0282739 eggNOG:COG5250 KO:K03012
OMA:LCPETAD InterPro:IPR006590 SMART:SM00657 Uniprot:Q54S04
Length = 155
Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
Identities = 55/140 (39%), Positives = 87/140 (62%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLLQHRKTXXXXXXXXX---------XFSEV---- 124
EED L+FP++ ++A+ LL SEV +LL+HRK ++ +
Sbjct: 14 EEDLTTLKFPRDLKDAKFLLNSEVAILLEHRKGISESEGTEFPQNTLLIHLYYNSINDII 73
Query: 125 --FQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSL 182
F KTL Y E+F ++KN+ +I VR L+++ L +FE+A++ANLCPE +EAK+LIPSL
Sbjct: 74 RTFHKTLAYAEKFSRYKNKTSIKQVRTALSKQNLEEFEIASLANLCPEISDEAKSLIPSL 133
Query: 183 ECRFEEEELRQILDDIQTKR 202
+ + E++EL+ ILD++ R
Sbjct: 134 K-KMEDDELQAILDELSNLR 152
>TAIR|locus:2178158 [details] [associations]
symbol:NRPB4 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA;IDA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008152 "metabolic process" evidence=IEA]
[GO:0032774 "RNA biosynthetic process" evidence=IEA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IDA;IPI]
[GO:0000394 "RNA splicing, via endonucleolytic cleavage and
ligation" evidence=RCA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=RCA;TAS] InterPro:IPR005574
InterPro:IPR010997 Pfam:PF03874 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 EMBL:AB016893 GO:GO:0006366
SUPFAM:SSF47819 GO:GO:0003899 GO:GO:0005665 eggNOG:COG5250
KO:K03012 InterPro:IPR006590 SMART:SM00657 OMA:SQLVFPK
HOGENOM:HOG000195281 EMBL:AF016511 EMBL:AY086086 EMBL:BT025500
EMBL:AK317113 IPI:IPI00529292 RefSeq:NP_196554.1 UniGene:At.6949
ProteinModelPortal:O48890 SMR:O48890 STRING:O48890 PaxDb:O48890
PRIDE:O48890 EnsemblPlants:AT5G09920.1 GeneID:830853
KEGG:ath:AT5G09920 TAIR:At5g09920 InParanoid:O48890
PhylomeDB:O48890 ProtClustDB:CLSN2687520 Genevestigator:O48890
Uniprot:O48890
Length = 138
Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
Identities = 47/131 (35%), Positives = 82/131 (62%)
Query: 78 EEDAGDLQFPKEFENAETLLISEVHMLLQHR--KTXXXXXXXXXXFSEVFQKTLTYTERF 135
EE+A +L+ EF A+ L+ EV ++L+H+ + S+VF+K+L Y +RF
Sbjct: 6 EENAAELKIGDEFLKAKCLMNCEVSLILEHKFEQLQQISEDPMNQVSQVFEKSLQYVKRF 65
Query: 136 RKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECR---FEEEELR 192
++KN + + VR +L++ +L +FEL + NLCPET EEA A++PSL+ + ++E +
Sbjct: 66 SRYKNPDAVRQVREILSRHQLTEFELCVLGNLCPETVEEAVAMVPSLKTKGRAHDDEAIE 125
Query: 193 QILDDIQ-TKR 202
++L+D+ KR
Sbjct: 126 KMLNDLSLVKR 136
>POMBASE|SPBC337.14 [details] [associations]
symbol:rpb4 "DNA-directed RNA polymerase II complex
subunit Rpb4" species:4896 "Schizosaccharomyces pombe" [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=TAS] [GO:1900405 "regulation of cytokinetic
cell separation by regulation of transcription from RNA polymerase
II promoter" evidence=IMP] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IDA] InterPro:IPR005574 InterPro:IPR010997
Pfam:PF03874 PomBase:SPBC337.14 GO:GO:0000166 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0006366 GO:GO:1900405 GO:GO:0016591
SUPFAM:SSF47819 GO:GO:0003899 PDB:3H0G PDBsum:3H0G eggNOG:COG5250
KO:K03012 InterPro:IPR006590 SMART:SM00657 OMA:SQLVFPK
HOGENOM:HOG000195281 EMBL:AB019575 EMBL:AF149308 PIR:T40267
RefSeq:NP_595415.1 ProteinModelPortal:O74825 IntAct:O74825
MINT:MINT-4681017 STRING:O74825 PRIDE:O74825
EnsemblFungi:SPBC337.14.1 GeneID:2541011 KEGG:spo:SPBC337.14
OrthoDB:EOG4ZGSNW EvolutionaryTrace:O74825 NextBio:20802125
Uniprot:O74825
Length = 135
Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
Identities = 45/131 (34%), Positives = 69/131 (52%)
Query: 76 VVEEDAGDLQFPKEFENAETLLISEVHMLLQHRKTXXXXXXXXXX-FSEVFQKTLTYTER 134
+ EEDA L+ EFEN + L +SE +L++ ++V +KT+ Y
Sbjct: 5 IFEEDAAQLKLGPEFENEDMLTVSEAKILIETVLAQRARETNGEIPMTDVMKKTVAYFNV 64
Query: 135 FRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQI 194
F +FK E + +L + HKFE A + LC E EEA+ LIPSL + +++ L+ I
Sbjct: 65 FARFKTAEATYACERILGNR-FHKFERAQLGTLCCEDAEEARTLIPSLANKIDDQNLQGI 123
Query: 195 LDDIQTKRSLQ 205
LD++ T R Q
Sbjct: 124 LDELSTLRKFQ 134
>UNIPROTKB|G4MS77 [details] [associations]
symbol:MGG_04508 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR005574 InterPro:IPR010997 Pfam:PF03874
GO:GO:0000166 GO:GO:0006351 EMBL:CM001231 SUPFAM:SSF47819
GO:GO:0003899 KO:K03012 InterPro:IPR006590 SMART:SM00657
RefSeq:XP_003710947.1 ProteinModelPortal:G4MS77
EnsemblFungi:MGG_04508T0 GeneID:2678078 KEGG:mgr:MGG_04508
Uniprot:G4MS77
Length = 150
Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 48/123 (39%), Positives = 71/123 (57%)
Query: 78 EEDAGD-LQFPKEFENAETLLISEVHMLLQHRKTXXXXXXXXXXFSEVFQKTLTYTERFR 136
EE A D +Q EFE ETL SE ++L+ + +EV QKT + FR
Sbjct: 25 EEIASDEIQLG-EFEGVETLSYSEAELVLEALEKKRRKEKRYHE-TEVLQKTRDHLSLFR 82
Query: 137 KFKNRETITSVRNLLTQK-KLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQIL 195
+FK E + + LL+ + +LHKFE A IA+L PE +EAK LIPSL+ +F++ +L +L
Sbjct: 83 RFKTPENVQAAERLLSARPELHKFERAQIASLVPENSDEAKKLIPSLKDKFDDHDLEDLL 142
Query: 196 DDI 198
++
Sbjct: 143 QEL 145
>SGD|S000003676 [details] [associations]
symbol:RPB4 "RNA polymerase II subunit B32" species:4932
"Saccharomyces cerevisiae" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0044237 "cellular metabolic
process" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0045948 "positive regulation of translational initiation"
evidence=IMP] [GO:0031369 "translation initiation factor binding"
evidence=IPI] [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=IMP] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA;IDA] [GO:0034402
"recruitment of 3'-end processing factors to RNA polymerase II
holoenzyme complex" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=IDA] [GO:0003968 "RNA-directed RNA
polymerase activity" evidence=IDA] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IDA] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0031990 "mRNA export from nucleus in response to heat stress"
evidence=IMP] [GO:0003824 "catalytic activity" evidence=IEA]
InterPro:IPR005574 InterPro:IPR010997 Pfam:PF03874 SGD:S000003676
EMBL:BK006943 GO:GO:0000166 GO:GO:0006281 GO:GO:0000932 EMBL:X87371
GO:GO:0006367 GO:GO:0031990 GO:GO:0000288 SUPFAM:SSF47819
GO:GO:0045948 GO:GO:0034402 GO:GO:0003899 EMBL:X58099 GO:GO:0005665
PDB:1NT9 PDB:1PQV PDB:1WCM PDB:1Y1V PDB:1Y1W PDB:1Y1Y PDB:1Y77
PDB:2B63 PDB:2B8K PDB:2JA5 PDB:2JA6 PDB:2JA7 PDB:2JA8 PDB:2R7Z
PDB:2R92 PDB:2R93 PDB:2VUM PDB:3FKI PDB:3H3V PDB:3HOU PDB:3HOV
PDB:3HOW PDB:3HOX PDB:3HOY PDB:3HOZ PDB:3I4M PDB:3I4N PDB:3K1F
PDB:3PO2 PDB:3PO3 PDB:3QT1 PDB:4A3B PDB:4A3C PDB:4A3D PDB:4A3E
PDB:4A3F PDB:4A3G PDB:4A3I PDB:4A3J PDB:4A3K PDB:4A3L PDB:4A3M
PDB:4A93 PDB:4BBR PDB:4BBS PDBsum:1NT9 PDBsum:1PQV PDBsum:1WCM
PDBsum:1Y1V PDBsum:1Y1W PDBsum:1Y1Y PDBsum:1Y77 PDBsum:2B63
PDBsum:2B8K PDBsum:2JA5 PDBsum:2JA6 PDBsum:2JA7 PDBsum:2JA8
PDBsum:2R7Z PDBsum:2R92 PDBsum:2R93 PDBsum:2VUM PDBsum:3FKI
PDBsum:3H3V PDBsum:3HOU PDBsum:3HOV PDBsum:3HOW PDBsum:3HOX
PDBsum:3HOY PDBsum:3HOZ PDBsum:3I4M PDBsum:3I4N PDBsum:3K1F
PDBsum:3PO2 PDBsum:3PO3 PDBsum:3QT1 PDBsum:4A3B PDBsum:4A3C
PDBsum:4A3D PDBsum:4A3E PDBsum:4A3F PDBsum:4A3G PDBsum:4A3I
PDBsum:4A3J PDBsum:4A3K PDBsum:4A3L PDBsum:4A3M PDBsum:4A93
PDBsum:4BBR PDBsum:4BBS eggNOG:COG5250 KO:K03012 InterPro:IPR006590
SMART:SM00657 GeneTree:ENSGT00390000004912 HOGENOM:HOG000195281
OrthoDB:EOG4ZGSNW EMBL:M27253 EMBL:Z49415 EMBL:AY557856 PIR:A32490
RefSeq:NP_012395.1 PDB:1Y14 PDBsum:1Y14 ProteinModelPortal:P20433
SMR:P20433 DIP:DIP-55N IntAct:P20433 MINT:MINT-538215 STRING:P20433
PaxDb:P20433 PeptideAtlas:P20433 EnsemblFungi:YJL140W GeneID:853301
KEGG:sce:YJL140W CYGD:YJL140w OMA:GTLECED EvolutionaryTrace:P20433
NextBio:973621 Genevestigator:P20433 GermOnline:YJL140W
Uniprot:P20433
Length = 221
Score = 148 (57.2 bits), Expect = 6.8e-13, Sum P(2) = 6.8e-13
Identities = 29/79 (36%), Positives = 49/79 (62%)
Query: 126 QKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECR 185
+ T+ Y F +F+++ET+ +V LL LH FE+A + +L +T +EAK LIPSL +
Sbjct: 142 KNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLNNK 201
Query: 186 FEEEELRQILDDIQTKRSL 204
++EL +IL ++ +L
Sbjct: 202 ISDDELERILKELSNLETL 220
Score = 35 (17.4 bits), Expect = 6.8e-13, Sum P(2) = 6.8e-13
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 78 EEDAGDLQFPKEFE 91
EE+A LQ +EF+
Sbjct: 21 EENAATLQLGQEFQ 34
>ASPGD|ASPL0000040846 [details] [associations]
symbol:AN10362 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:1900405 "regulation of cytokinetic cell
separation by regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] InterPro:IPR005574
InterPro:IPR010997 Pfam:PF03874 GO:GO:0000166 EMBL:BN001306
GO:GO:0006351 SUPFAM:SSF47819 GO:GO:0003899 InterPro:IPR006590
SMART:SM00657 HOGENOM:HOG000195281 EnsemblFungi:CADANIAT00010142
OMA:QLGSLCC Uniprot:C8VJ36
Length = 149
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 39/126 (30%), Positives = 66/126 (52%)
Query: 79 EDAGDLQFPKEFENAETLLISEVHMLLQHRKTXXXXXXXXXXFSEVFQKTLTYTERFRKF 138
E A L+ + +N TL +SE +++ E KTL Y F +F
Sbjct: 22 EAASTLKLGAD-QNTHTLSLSEARLVIDKVLENKRRGGKKYEEPENLIKTLEYLSLFARF 80
Query: 139 KNRETITSVRNLL-TQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDD 197
K+ E I +V LL + +L FE + + +LC + +EAK+LIPSL+ + + EL+++LD+
Sbjct: 81 KDEENIKAVERLLNSHTELEMFERSQLGSLCCDNADEAKSLIPSLQNKISDGELQELLDE 140
Query: 198 IQTKRS 203
+ R+
Sbjct: 141 LTKLRN 146
>GENEDB_PFALCIPARUM|PFB0245c [details] [associations]
symbol:PFB0245c "DNA-directed RNA polymerase II
16 kDa subunit, putative" species:5833 "Plasmodium falciparum"
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR005574 InterPro:IPR010997 Pfam:PF03874 GO:GO:0000166
GO:GO:0006366 SUPFAM:SSF47819 EMBL:AE001362 GO:GO:0003899 KO:K03012
InterPro:IPR006590 SMART:SM00657 PIR:H71619 RefSeq:XP_001349565.1
ProteinModelPortal:O96150 PRIDE:O96150
EnsemblProtists:PFB0245c:mRNA GeneID:812647 KEGG:pfa:PFB0245c
EuPathDB:PlasmoDB:PF3D7_0205500 HOGENOM:HOG000284249 OMA:MANNING
ProtClustDB:CLSZ2500798 Uniprot:O96150
Length = 132
Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 39/125 (31%), Positives = 63/125 (50%)
Query: 77 VEEDAGDLQFPKEFENAETLLISEVHMLL--QHRKTXXXXXXXXXXFSEVFQKTLTYTER 134
+ D +L +F+N + L + E+ ++L Q R T + + + Y +
Sbjct: 5 INGDIKNLDLGPDFKNCKCLNLCELQLILGDQLRLTSKRNEEAQA----LIKSSYDYANK 60
Query: 135 FRKFKNRETITSVR-NLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQ 193
F KNR +I +R NL LH++E+A + NL P+T EA+ LIPSL R +E L
Sbjct: 61 FAAIKNRSSIVDIRTNLERIGDLHEYEIAMLVNLLPKTILEARYLIPSL-IRLNDETLNS 119
Query: 194 ILDDI 198
IL+ +
Sbjct: 120 ILEHL 124
>UNIPROTKB|O96150 [details] [associations]
symbol:PFB0245c "DNA-directed RNA polymerase II 16 kDa
subunit, putative" species:36329 "Plasmodium falciparum 3D7"
[GO:0005575 "cellular_component" evidence=ND] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
InterPro:IPR005574 InterPro:IPR010997 Pfam:PF03874 GO:GO:0000166
GO:GO:0006366 SUPFAM:SSF47819 EMBL:AE001362 GO:GO:0003899 KO:K03012
InterPro:IPR006590 SMART:SM00657 PIR:H71619 RefSeq:XP_001349565.1
ProteinModelPortal:O96150 PRIDE:O96150
EnsemblProtists:PFB0245c:mRNA GeneID:812647 KEGG:pfa:PFB0245c
EuPathDB:PlasmoDB:PF3D7_0205500 HOGENOM:HOG000284249 OMA:MANNING
ProtClustDB:CLSZ2500798 Uniprot:O96150
Length = 132
Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 39/125 (31%), Positives = 63/125 (50%)
Query: 77 VEEDAGDLQFPKEFENAETLLISEVHMLL--QHRKTXXXXXXXXXXFSEVFQKTLTYTER 134
+ D +L +F+N + L + E+ ++L Q R T + + + Y +
Sbjct: 5 INGDIKNLDLGPDFKNCKCLNLCELQLILGDQLRLTSKRNEEAQA----LIKSSYDYANK 60
Query: 135 FRKFKNRETITSVR-NLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQ 193
F KNR +I +R NL LH++E+A + NL P+T EA+ LIPSL R +E L
Sbjct: 61 FAAIKNRSSIVDIRTNLERIGDLHEYEIAMLVNLLPKTILEARYLIPSL-IRLNDETLNS 119
Query: 194 ILDDI 198
IL+ +
Sbjct: 120 ILEHL 124
>UNIPROTKB|I3LMY5 [details] [associations]
symbol:POLR2D "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0004672 "protein kinase activity"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR005574 InterPro:IPR010997 Pfam:PF03874 GO:GO:0000166
GO:GO:0004672 GO:GO:0006366 SUPFAM:SSF47819 GO:GO:0003899
GO:GO:0005665 GeneTree:ENSGT00390000004912 EMBL:CU914448
Ensembl:ENSSSCT00000024744 Uniprot:I3LMY5
Length = 61
Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 28/48 (58%), Positives = 30/48 (62%)
Query: 103 MLLQHRKTXXXXXXXXXXFSEVFQKTLTYTERFRKFKNRETITSVRNL 150
MLL+HRK SEVF KTL YT RF +FKNRETI SVR L
Sbjct: 1 MLLEHRKQQNESAEDEQELSEVFMKTLNYTARFSRFKNRETIASVRRL 48
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.133 0.371 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 206 196 0.00080 111 3 11 22 0.46 32
31 0.44 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 20
No. of states in DFA: 562 (60 KB)
Total size of DFA: 142 KB (2088 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 19.90u 0.08s 19.98t Elapsed: 00:00:03
Total cpu time: 19.90u 0.08s 19.98t Elapsed: 00:00:03
Start: Thu Aug 15 13:55:17 2013 End: Thu Aug 15 13:55:20 2013