RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14375
         (206 letters)



>d2c35a1 a.60.8.2 (A:14-142) RNA polymerase II subunit RBP4 (RpoF)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 129

 Score =  156 bits (395), Expect = 9e-50
 Identities = 103/129 (79%), Positives = 112/129 (86%)

Query: 78  EEDAGDLQFPKEFENAETLLISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRK 137
           EEDA  L FPKEFE AETLL SEVHMLL+HRK QNE+AE+EQE SEVF KTL YT RF +
Sbjct: 1   EEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLNYTARFSR 60

Query: 138 FKNRETITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDD 197
           FKNRETI SVR+LL QKKLHKFELA +ANLCPET EE+KALIPSLE RFE+EEL+QILDD
Sbjct: 61  FKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGRFEDEELQQILDD 120

Query: 198 IQTKRSLQY 206
           IQTKRS QY
Sbjct: 121 IQTKRSFQY 129


>d1y14a_ a.60.8.2 (A:) RNA polymerase II subunit RBP4 (RpoF)
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 176

 Score =  121 bits (306), Expect = 9e-36
 Identities = 32/121 (26%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 87  PKEFENAETLLISEVHMLLQHRKTQNENAEEEQ---EFSEVFQKTLTYTERFRKFKNRET 143
             + ++        +H   + ++ ++ +   EQ     ++  + T+ Y   F +F+++ET
Sbjct: 55  DLDEDDVNADDDDFMHSETREKELESIDVLLEQTTGGNNKDLKNTMQYLTNFSRFRDQET 114

Query: 144 ITSVRNLLTQKKLHKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDDIQTKRS 203
           + +V  LL    LH FE+A + +L  +T +EAK LIPSL  +  ++EL +IL ++    +
Sbjct: 115 VGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLNNKISDDELERILKELSNLET 174

Query: 204 L 204
           L
Sbjct: 175 L 175


>d1go3f_ a.60.8.2 (F:) RNA polymerase II subunit RBP4 (RpoF)
           {Archaeon Methanococcus jannaschii [TaxId: 2190]}
          Length = 107

 Score = 95.6 bits (238), Expect = 2e-26
 Identities = 19/101 (18%), Positives = 41/101 (40%), Gaps = 1/101 (0%)

Query: 97  LISEVHMLLQHRKTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVRNLLTQKKL 156
           ++ E ++ +        N  +  E S      L Y ++F K  ++E    +   L    +
Sbjct: 6   ILGERYVTVSEAAEIMYNRAQIGELSYEQGCALDYLQKFAKL-DKEEAKKLVEELISLGI 64

Query: 157 HKFELAAIANLCPETPEEAKALIPSLECRFEEEELRQILDD 197
            +     IA++ PE  ++ +A+    E     EE+ +I+  
Sbjct: 65  DEKTAVKIADILPEDLDDLRAIYYKRELPENAEEILEIVRK 105


>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase
           At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId:
           3702]}
          Length = 184

 Score = 26.5 bits (57), Expect = 1.9
 Identities = 6/44 (13%), Positives = 16/44 (36%)

Query: 35  RKIQPKSNQIKSALSKSVPPRTPYSDRVSIGYIIMTHVLDQVVE 78
           R+      +IK+  +K        S +  +    +   +D+  +
Sbjct: 136 REFARLVGEIKNNGAKPDGYWPSISRKTQLVVDAVKESVDKNYQ 179


>d1d02a_ c.52.1.8 (A:) Restriction endonuclease MunI {Mycoplasma,
           unidentified species [TaxId: 2093]}
          Length = 197

 Score = 26.1 bits (57), Expect = 2.5
 Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 4/58 (6%)

Query: 109 KTQNENAEEEQEFSEVFQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKFELAAIAN 166
               + +  EQ    VF      T+    +   E    ++NL  Q  L    +  I N
Sbjct: 10  LAGLKASGAEQNLYNVFNAVFEGTK----YVLYEKPKHLKNLYAQVVLPDDVIKEIFN 63


>d1zsqa2 c.45.1.3 (A:199-585) Myotubularin-related protein 2,
           C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 387

 Score = 26.1 bits (57), Expect = 3.9
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 85  QFPKEFENAETLLISEVHMLLQHR-KTQNENAEEEQEFSEVFQKTLT----YTERFRKFK 139
           QFP  FE  E  LI+ +  L      T   N+E+++    + ++T++       +   F 
Sbjct: 295 QFPTAFEFNEYFLITILDHLYSCLFGTFLCNSEQQRGKENLPKRTVSLWSYINSQLEDFT 354

Query: 140 N 140
           N
Sbjct: 355 N 355


>d1owaa_ a.7.1.1 (A:) Spectrin alpha chain {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 156

 Score = 25.1 bits (54), Expect = 4.5
 Identities = 18/141 (12%), Positives = 44/141 (31%), Gaps = 14/141 (9%)

Query: 73  LDQVVEEDAGDLQFPKEFENAETL---------LISEVHMLLQHRKTQNENAEEEQEFSE 123
           ++Q  +E   +   PK  E AE +                 +  R  + E++   Q F  
Sbjct: 1   MEQFPKETVVESSGPKVLETAEEIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQVFKR 60

Query: 124 VFQKTLTYTERFRKFKNRETITSVRNLLTQKKLHKF---ELAAIANLCPETPEEAKALIP 180
                  +          ++     N+  + + H+    E+   + L  E  +  +    
Sbjct: 61  DADDLGKWIMEKVNILTDKSYEDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKTREERFT 120

Query: 181 SLECRFEEEELRQILDDIQTK 201
                   EE +  +++++  
Sbjct: 121 --MGHSAHEETKAHIEELRHL 139


>d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate
          dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId:
          1314]}
          Length = 365

 Score = 25.8 bits (56), Expect = 4.7
 Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 3/44 (6%)

Query: 37 IQPKSNQIKSALSKSVPPRTPYSDRVSIGYIIMTHVLDQVVEED 80
          + P  + +   L   V  +T  +D +++   I+T  +D V    
Sbjct: 19 LIPAESHV---LPNEVDLKTKLADNLTLNIPIITAAMDTVTGSK 59


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.131    0.362 

Gapped
Lambda     K      H
   0.267   0.0631    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 695,111
Number of extensions: 29792
Number of successful extensions: 109
Number of sequences better than 10.0: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 13
Length of query: 206
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 125
Effective length of database: 1,295,466
Effective search space: 161933250
Effective search space used: 161933250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.6 bits)