Query psy14376
Match_columns 327
No_of_seqs 128 out of 1332
Neff 9.5
Searched_HMMs 46136
Date Fri Aug 16 18:16:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14376.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14376hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00817 tpt Tpt phosphate/ph 100.0 1.5E-35 3.3E-40 266.2 27.2 288 12-312 2-295 (302)
2 PTZ00343 triose or hexose phos 100.0 3.2E-33 7E-38 254.9 30.3 292 9-311 46-349 (350)
3 KOG1442|consensus 100.0 3.4E-36 7.4E-41 250.6 6.4 317 6-323 22-340 (347)
4 KOG1444|consensus 100.0 1.9E-31 4.1E-36 229.2 27.3 309 1-320 1-310 (314)
5 PLN00411 nodulin MtN21 family 100.0 1.7E-30 3.6E-35 236.2 30.1 300 7-317 8-335 (358)
6 KOG1441|consensus 100.0 2.4E-31 5.2E-36 233.8 13.9 301 6-317 11-314 (316)
7 PF08449 UAA: UAA transporter 100.0 9.6E-29 2.1E-33 221.8 25.8 276 29-315 17-302 (303)
8 PRK11272 putative DMT superfam 100.0 1.7E-27 3.6E-32 212.8 30.7 279 4-310 4-285 (292)
9 PRK11453 O-acetylserine/cystei 100.0 1.5E-27 3.3E-32 213.8 30.3 281 9-312 5-289 (299)
10 PRK11689 aromatic amino acid e 100.0 2.9E-27 6.4E-32 211.5 29.7 272 8-310 4-287 (295)
11 PRK15430 putative chlorampheni 100.0 3.3E-27 7.1E-32 211.3 27.7 286 1-311 1-286 (296)
12 PRK10532 threonine and homoser 100.0 3.5E-26 7.7E-31 204.3 30.8 272 6-311 10-282 (293)
13 TIGR00950 2A78 Carboxylate/Ami 99.9 1.4E-25 3E-30 197.3 26.3 251 30-305 7-259 (260)
14 PF06027 DUF914: Eukaryotic pr 99.9 3.7E-25 8E-30 197.3 27.5 272 31-314 32-309 (334)
15 COG5070 VRG4 Nucleotide-sugar 99.9 1.5E-25 3.2E-30 181.9 16.6 292 15-319 9-305 (309)
16 KOG1443|consensus 99.9 1.1E-23 2.4E-28 178.9 21.3 295 6-310 11-315 (349)
17 KOG1581|consensus 99.9 3E-22 6.4E-27 170.4 23.0 266 38-314 46-317 (327)
18 TIGR03340 phn_DUF6 phosphonate 99.9 9.8E-22 2.1E-26 174.7 25.7 268 14-307 7-280 (281)
19 KOG1580|consensus 99.9 6.8E-23 1.5E-27 167.8 13.2 260 40-310 50-313 (337)
20 TIGR00688 rarD rarD protein. T 99.9 5.1E-21 1.1E-25 168.0 25.7 251 9-285 3-255 (256)
21 KOG1582|consensus 99.9 7.2E-22 1.6E-26 165.0 18.8 293 9-312 40-334 (367)
22 COG0697 RhaT Permeases of the 99.9 2.8E-19 6.1E-24 159.3 31.0 278 9-311 8-288 (292)
23 COG5006 rhtA Threonine/homoser 99.9 7.3E-19 1.6E-23 145.9 23.8 262 15-310 20-282 (292)
24 COG2962 RarD Predicted permeas 99.8 5.9E-17 1.3E-21 138.2 27.3 288 4-317 3-290 (293)
25 TIGR00776 RhaT RhaT L-rhamnose 99.8 4.1E-17 8.9E-22 145.3 26.9 267 10-310 3-288 (290)
26 KOG2765|consensus 99.8 2.3E-18 5.1E-23 150.5 17.4 227 86-314 156-394 (416)
27 PF04142 Nuc_sug_transp: Nucle 99.8 6.3E-18 1.4E-22 145.9 19.4 216 81-301 13-244 (244)
28 KOG2234|consensus 99.8 1.7E-16 3.6E-21 139.2 26.2 281 29-315 32-327 (345)
29 KOG4510|consensus 99.8 5.2E-20 1.1E-24 153.7 3.4 254 42-312 63-327 (346)
30 KOG3912|consensus 99.8 1E-16 2.2E-21 134.9 20.1 291 17-310 8-334 (372)
31 KOG1583|consensus 99.7 1.5E-17 3.3E-22 139.7 8.7 260 42-316 32-320 (330)
32 PF03151 TPT: Triose-phosphate 99.6 2.8E-15 6E-20 121.1 12.8 142 169-310 1-153 (153)
33 KOG2766|consensus 99.5 2.9E-14 6.2E-19 118.8 3.8 259 30-311 36-300 (336)
34 TIGR00803 nst UDP-galactose tr 99.3 1.9E-11 4.1E-16 104.9 12.2 191 109-308 2-222 (222)
35 COG2510 Predicted membrane pro 99.3 4.2E-11 9.1E-16 89.6 11.3 135 169-309 4-138 (140)
36 PF00892 EamA: EamA-like trans 99.2 2.3E-10 5.1E-15 88.5 9.5 115 30-155 9-124 (126)
37 PF13536 EmrE: Multidrug resis 99.1 2.4E-10 5.3E-15 87.2 7.8 106 48-159 2-108 (113)
38 KOG4314|consensus 99.1 3.4E-10 7.4E-15 91.2 8.5 219 85-311 53-277 (290)
39 PF00892 EamA: EamA-like trans 99.1 7E-10 1.5E-14 85.8 8.5 124 178-309 1-125 (126)
40 COG2510 Predicted membrane pro 99.0 2.2E-09 4.8E-14 80.5 10.0 118 30-156 21-138 (140)
41 TIGR00950 2A78 Carboxylate/Ami 98.8 1.7E-07 3.6E-12 82.3 16.0 133 7-153 127-260 (260)
42 TIGR03340 phn_DUF6 phosphonate 98.8 1.2E-07 2.6E-12 84.4 14.6 133 170-310 3-135 (281)
43 PF05653 Mg_trans_NIPA: Magnes 98.8 6.8E-07 1.5E-11 79.7 18.4 216 95-313 60-295 (300)
44 TIGR00688 rarD rarD protein. T 98.8 1.2E-07 2.7E-12 83.1 13.3 139 168-309 2-141 (256)
45 PRK15430 putative chlorampheni 98.8 1.6E-07 3.4E-12 84.2 14.2 140 165-309 5-144 (296)
46 PF06800 Sugar_transport: Suga 98.7 3.6E-06 7.9E-11 73.0 20.4 212 83-307 43-268 (269)
47 PLN00411 nodulin MtN21 family 98.6 1.6E-06 3.4E-11 79.5 14.5 138 168-310 13-156 (358)
48 PRK15051 4-amino-4-deoxy-L-ara 98.5 3.3E-06 7.3E-11 63.8 10.9 64 93-156 45-108 (111)
49 PRK10532 threonine and homoser 98.4 1.6E-05 3.4E-10 71.2 15.2 130 11-157 151-281 (293)
50 PRK11272 putative DMT superfam 98.4 1.7E-05 3.6E-10 71.0 15.0 134 9-157 151-285 (292)
51 PF03151 TPT: Triose-phosphate 98.3 3.3E-05 7.1E-10 62.0 13.7 124 30-154 18-150 (153)
52 PRK11689 aromatic amino acid e 98.3 3.4E-05 7.5E-10 69.1 14.6 78 80-157 210-287 (295)
53 PRK11453 O-acetylserine/cystei 98.2 7.9E-05 1.7E-09 66.9 15.1 144 9-158 144-288 (299)
54 PRK13499 rhamnose-proton sympo 98.1 0.0024 5.2E-08 57.8 23.7 229 81-311 69-342 (345)
55 PTZ00343 triose or hexose phos 98.1 0.00011 2.4E-09 67.5 15.1 139 166-310 47-186 (350)
56 PF13536 EmrE: Multidrug resis 98.1 3.9E-05 8.4E-10 58.4 10.1 105 204-312 3-108 (113)
57 COG2962 RarD Predicted permeas 98.1 5.1E-05 1.1E-09 65.7 11.3 139 166-310 5-144 (293)
58 PRK02971 4-amino-4-deoxy-L-ara 98.0 0.00023 5E-09 55.2 13.1 118 168-310 2-122 (129)
59 PRK02971 4-amino-4-deoxy-L-ara 98.0 0.00027 6E-09 54.8 12.9 72 87-158 50-123 (129)
60 KOG2922|consensus 98.0 0.00022 4.7E-09 62.6 12.9 221 88-313 66-309 (335)
61 TIGR00817 tpt Tpt phosphate/ph 97.8 0.00048 1E-08 61.9 13.9 119 184-309 18-136 (302)
62 TIGR00776 RhaT RhaT L-rhamnose 97.7 0.00053 1.1E-08 61.2 11.5 132 169-312 2-138 (290)
63 PF08449 UAA: UAA transporter 97.7 0.00075 1.6E-08 60.7 12.3 129 180-316 12-142 (303)
64 PF06027 DUF914: Eukaryotic pr 97.7 0.001 2.2E-08 60.1 12.7 140 168-312 13-153 (334)
65 PRK10452 multidrug efflux syst 97.6 0.00027 5.9E-09 53.8 7.6 57 256-312 48-105 (120)
66 PRK15051 4-amino-4-deoxy-L-ara 97.6 0.0011 2.4E-08 50.0 10.6 54 256-309 55-108 (111)
67 PRK10452 multidrug efflux syst 97.6 0.0003 6.4E-09 53.7 7.1 69 88-156 33-102 (120)
68 COG0697 RhaT Permeases of the 97.6 0.0032 6.9E-08 55.7 14.7 141 166-313 5-146 (292)
69 PRK09541 emrE multidrug efflux 97.4 0.00085 1.8E-08 50.4 7.8 68 89-156 34-102 (110)
70 COG2076 EmrE Membrane transpor 97.3 0.0011 2.3E-08 49.0 6.9 69 87-155 32-101 (106)
71 PF04657 DUF606: Protein of un 97.3 0.0057 1.2E-07 48.1 11.5 131 170-307 3-138 (138)
72 PRK09541 emrE multidrug efflux 97.3 0.0014 3.1E-08 49.3 7.2 55 257-311 49-104 (110)
73 PRK10650 multidrug efflux syst 97.2 0.0018 3.8E-08 48.5 7.6 68 88-155 38-106 (109)
74 PF05653 Mg_trans_NIPA: Magnes 97.2 0.0011 2.5E-08 59.2 7.6 119 165-310 4-122 (300)
75 PRK11431 multidrug efflux syst 97.2 0.0022 4.7E-08 47.8 7.5 68 88-155 32-100 (105)
76 PRK10650 multidrug efflux syst 97.1 0.0056 1.2E-07 45.8 8.6 55 255-309 52-107 (109)
77 PRK11431 multidrug efflux syst 97.0 0.0053 1.2E-07 45.7 8.3 56 255-310 46-102 (105)
78 COG2076 EmrE Membrane transpor 97.0 0.0047 1E-07 45.6 7.6 55 256-310 48-103 (106)
79 PF00893 Multi_Drug_Res: Small 96.9 0.0028 6E-08 46.3 6.1 58 90-147 34-92 (93)
80 PF04142 Nuc_sug_transp: Nucle 96.9 0.0043 9.3E-08 53.9 7.7 76 239-314 18-93 (244)
81 PRK13499 rhamnose-proton sympo 96.7 0.017 3.7E-07 52.4 10.3 138 166-310 5-153 (345)
82 COG4975 GlcU Putative glucose 96.6 0.0005 1.1E-08 58.1 0.1 207 90-310 64-285 (288)
83 COG5006 rhtA Threonine/homoser 96.4 0.071 1.5E-06 45.6 11.7 57 97-153 222-278 (292)
84 PF06800 Sugar_transport: Suga 96.4 0.059 1.3E-06 47.1 11.6 119 8-146 138-256 (269)
85 TIGR00803 nst UDP-galactose tr 96.1 0.15 3.2E-06 43.5 12.3 67 88-154 155-221 (222)
86 COG3238 Uncharacterized protei 95.9 0.15 3.3E-06 40.3 10.4 136 167-308 4-144 (150)
87 PF04657 DUF606: Protein of un 95.6 0.8 1.7E-05 35.9 13.7 121 24-154 13-138 (138)
88 PF00893 Multi_Drug_Res: Small 95.5 0.047 1E-06 39.7 5.9 46 256-301 47-93 (93)
89 KOG4510|consensus 95.3 0.015 3.3E-07 49.9 3.2 133 168-312 38-171 (346)
90 PF10639 UPF0546: Uncharacteri 95.3 0.039 8.5E-07 41.5 4.9 68 86-154 43-111 (113)
91 KOG2234|consensus 95.1 0.66 1.4E-05 41.8 12.7 140 170-309 17-163 (345)
92 COG5070 VRG4 Nucleotide-sugar 95.0 0.75 1.6E-05 38.8 11.9 109 43-154 185-293 (309)
93 KOG1441|consensus 94.2 0.096 2.1E-06 47.0 5.4 128 24-156 175-306 (316)
94 KOG1581|consensus 94.1 0.88 1.9E-05 40.2 10.9 119 32-154 192-310 (327)
95 COG4975 GlcU Putative glucose 94.0 0.022 4.8E-07 48.4 1.0 131 169-312 3-138 (288)
96 KOG2765|consensus 92.5 1.4 2.9E-05 40.2 9.7 140 11-159 250-392 (416)
97 KOG1444|consensus 92.0 0.83 1.8E-05 40.6 7.7 122 31-155 176-298 (314)
98 PF10639 UPF0546: Uncharacteri 90.8 1.8 3.9E-05 32.6 7.5 49 259-307 62-111 (113)
99 COG3238 Uncharacterized protei 89.6 9.1 0.0002 30.4 12.9 127 21-156 14-145 (150)
100 KOG4314|consensus 89.3 0.5 1.1E-05 38.9 3.7 64 251-314 66-129 (290)
101 KOG1580|consensus 88.5 0.43 9.3E-06 40.5 2.9 70 85-154 241-310 (337)
102 PF07857 DUF1632: CEO family ( 87.0 0.96 2.1E-05 39.3 4.3 25 291-315 115-139 (254)
103 KOG2922|consensus 84.5 0.45 9.8E-06 42.3 1.1 120 164-310 17-136 (335)
104 PF06379 RhaT: L-rhamnose-prot 83.7 16 0.00034 33.2 10.3 24 167-190 6-29 (344)
105 KOG3912|consensus 79.7 4.4 9.5E-05 35.6 5.3 52 259-310 107-158 (372)
106 PF04342 DUF486: Protein of un 77.4 2.8 6E-05 30.8 2.9 30 278-307 76-105 (108)
107 PRK02237 hypothetical protein; 74.1 9.9 0.00021 28.2 5.1 44 114-157 62-105 (109)
108 PF05297 Herpes_LMP1: Herpesvi 74.0 1 2.2E-05 39.2 0.0 100 108-209 46-147 (381)
109 PF02694 UPF0060: Uncharacteri 73.5 9.7 0.00021 28.2 4.9 45 114-158 60-104 (107)
110 KOG2766|consensus 61.4 1.4 3E-05 38.0 -1.7 61 251-311 91-151 (336)
111 COG1742 Uncharacterized conser 60.5 19 0.00042 26.5 4.2 45 115-159 62-106 (109)
112 COG3169 Uncharacterized protei 59.0 17 0.00037 26.4 3.7 30 278-307 83-112 (116)
113 PF06379 RhaT: L-rhamnose-prot 58.8 1.5E+02 0.0032 27.2 20.1 133 49-188 40-193 (344)
114 PRK02237 hypothetical protein; 57.4 17 0.00037 27.0 3.6 40 272-311 67-106 (109)
115 KOG1442|consensus 56.7 36 0.00078 30.0 6.0 110 42-154 214-324 (347)
116 PF02694 UPF0060: Uncharacteri 53.8 18 0.0004 26.7 3.2 39 273-311 66-104 (107)
117 KOG1582|consensus 52.9 97 0.0021 27.4 7.9 52 107-158 282-333 (367)
118 KOG4831|consensus 52.5 17 0.00038 26.8 2.9 68 86-154 54-122 (125)
119 COG4657 RnfA Predicted NADH:ub 44.8 83 0.0018 25.3 5.8 91 104-216 90-184 (193)
120 PRK10213 nepI ribonucleoside t 44.4 2.6E+02 0.0056 25.8 10.8 44 109-152 52-97 (394)
121 KOG1443|consensus 44.3 87 0.0019 28.1 6.4 55 101-155 259-313 (349)
122 PF11139 DUF2910: Protein of u 41.5 2.1E+02 0.0046 24.0 11.1 24 42-65 64-87 (214)
123 PF04018 DUF368: Domain of unk 39.9 2.4E+02 0.0052 24.7 8.6 52 134-185 105-157 (257)
124 TIGR03644 marine_trans_1 proba 39.8 3.3E+02 0.0071 25.7 18.9 60 125-189 257-316 (404)
125 cd08764 Cyt_b561_CG1275_like N 38.3 2.5E+02 0.0054 23.8 10.4 17 293-309 176-192 (214)
126 PF11118 DUF2627: Protein of u 38.2 1.4E+02 0.0029 20.8 7.4 50 9-60 3-52 (77)
127 PRK11403 hypothetical protein; 37.5 1.7E+02 0.0038 21.8 9.1 76 141-219 8-83 (113)
128 PF00909 Ammonium_transp: Ammo 37.1 3.5E+02 0.0077 25.3 18.7 22 49-70 156-177 (399)
129 COG3169 Uncharacterized protei 35.7 70 0.0015 23.3 3.8 30 126-155 84-113 (116)
130 COG4682 Predicted membrane pro 34.3 2.1E+02 0.0045 21.8 8.3 64 141-205 13-77 (128)
131 KOG1583|consensus 32.6 80 0.0017 28.0 4.4 69 89-157 238-314 (330)
132 PF06946 Phage_holin_5: Phage 29.9 2.2E+02 0.0047 20.6 7.0 24 131-154 24-47 (93)
133 PRK13108 prolipoprotein diacyl 28.0 5.5E+02 0.012 24.7 17.0 24 290-313 254-277 (460)
134 cd01324 cbb3_Oxidase_CcoQ Cyto 27.5 65 0.0014 20.1 2.3 23 298-320 19-41 (48)
135 PF11044 TMEMspv1-c74-12: Plec 25.8 46 0.001 20.2 1.3 11 303-313 21-31 (49)
136 PRK12437 prolipoprotein diacyl 25.0 36 0.00079 30.0 1.1 23 290-312 235-257 (269)
137 PF05545 FixQ: Cbb3-type cytoc 23.9 69 0.0015 19.9 1.9 19 298-316 18-36 (49)
138 PF07444 Ycf66_N: Ycf66 protei 23.5 64 0.0014 22.9 1.9 23 289-311 4-26 (84)
139 COG1971 Predicted membrane pro 23.0 93 0.002 25.8 3.0 40 267-306 43-83 (190)
140 COG3086 RseC Positive regulato 22.1 2E+02 0.0044 22.7 4.5 38 107-145 70-107 (150)
141 TIGR00905 2A0302 transporter, 22.1 6.4E+02 0.014 24.0 9.1 21 293-313 417-437 (473)
142 PF04342 DUF486: Protein of un 21.5 3.5E+02 0.0076 20.1 8.3 58 97-154 47-105 (108)
143 PRK10655 potE putrescine trans 21.3 2.8E+02 0.0061 26.0 6.5 28 293-320 409-436 (438)
144 COG3086 RseC Positive regulato 21.2 1.8E+02 0.0038 23.0 4.0 11 281-291 96-106 (150)
145 PF11295 DUF3096: Protein of u 20.1 98 0.0021 18.3 1.9 31 276-306 2-32 (39)
No 1
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=100.00 E-value=1.5e-35 Score=266.16 Aligned_cols=288 Identities=20% Similarity=0.238 Sum_probs=232.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHhhhccCccccCCCCCCCChhhHHHHHHH
Q psy14376 12 KITLAVSLYWLVSIITVFVNKALLSELKLDAPLFITWFQCVISAFLCIFLHIFSLFFPNILTFPTGNPFRLNTLINVLPL 91 (327)
Q Consensus 12 ~~~~~~~~~~~~s~~~~~~~k~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 91 (327)
++.+....|+..|++.++.||+++++ +++|..++++|+..+.+.+.+....+.+ +.+ +.++++++.+++.
T Consensus 2 ~~~~~~~~w~~~~~~~~~~NK~~l~~--~~~P~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---~~~~~~~~~~~~~ 71 (302)
T TIGR00817 2 QTGLLFGLWYFLNVYFNIYNKKLLNV--FPYPYFKTLISLAVGSLYCLLSWSSGLP-----KRL---KISSALLKLLLPV 71 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh--CChhHHHHHHHHHHHHHHHHHHHHhCCC-----CCC---CCCHHHHHHHHHH
Confidence 45678899999999999999999984 6689999999999998877665322111 112 2668889999999
Q ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhhheeccCCcCcccchhHHH
Q psy14376 92 SILFMSMISFNNLCLKNVGVSFYYIGRSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWLGVDQEDLAGSFSISGTV 171 (327)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~G~~ 171 (327)
|++.+.+..++|.+++|+++++++++++++|+++++++++++|||++++++.+++++++|+.+...++ .+++..|++
T Consensus 72 g~~~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~---~~~~~~G~~ 148 (302)
T TIGR00817 72 AIVHTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTE---LSFNWAGFL 148 (302)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCc---ccccHHHHH
Confidence 99998999999999999999999999999999999999999999999999999999999998754322 355678999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCceehhhhhhHHHHHHHHHHHHHcCcccccc-cccc----cchhHHHHHHHHHHH
Q psy14376 172 YGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQ-DYAD----LNTAYFWLFLPIGGL 246 (327)
Q Consensus 172 ~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~ 246 (327)
++++|+++||+|.++.||..++.+.++.+.+.|+++.+.+.++|+....++..... +... ......+...+..+.
T Consensus 149 ~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (302)
T TIGR00817 149 SAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAM 228 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHH
Confidence 99999999999999999987744468899999999999999999887664322111 0000 111122322333333
Q ss_pred HHHH-HHHHHHHHHHhcchhhHHhhhcchHHHHHHHHHHHhCCccchhhhhHHHHHHhhhhhhhhcc
Q psy14376 247 CGFA-IGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFVK 312 (327)
Q Consensus 247 ~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~v~~~i~~~~~~~e~~~~~~~iG~~lii~g~~l~~~~~ 312 (327)
.++. .+...+..+++.+|++.++..+++|+.++++|++++||++++.+++|.++++.|+.++++.|
T Consensus 229 ~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k 295 (302)
T TIGR00817 229 GFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVK 295 (302)
T ss_pred HHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHh
Confidence 2333 33445678999999999999999999999999999999999999999999999999988644
No 2
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=100.00 E-value=3.2e-33 Score=254.88 Aligned_cols=292 Identities=18% Similarity=0.166 Sum_probs=234.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHhhhccCccccCCCCCCCChhhHHHH
Q psy14376 9 RYVKITLAVSLYWLVSIITVFVNKALLSELKLDAPLFITWFQCVISAFLCIFLHIFSLFFPNILTFPTGNPFRLNTLINV 88 (327)
Q Consensus 9 ~~~~~~~~~~~~~~~s~~~~~~~k~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 88 (327)
...++.+.+.+|+..|...++.||+++++ +|+|+.++++|++++.+.+.++...+.+ +.|+ .+-++++++.+
T Consensus 46 ~~~~~~~~~~~wy~~s~~~~~~nK~vl~~--~~~P~~l~~~~~~~~~l~~~~~~~~~~~-----~~~~-~~~~~~~~~~l 117 (350)
T PTZ00343 46 FKWKLALLFLTWYALNVLYVVDNKLALNM--LPLPWTISSLQLFVGWLFALLYWATGFR-----KIPR-IKSLKLFLKNF 117 (350)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHh--CChhHHHHHHHHHHHHHHHHHHHHhCCC-----CCCC-CCCHHHHHHHH
Confidence 36788899999999999999999999985 6569999999999998876655433321 1232 10124568899
Q ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhhheeccCCcCcccchh
Q psy14376 89 LPLSILFMSMISFNNLCLKNVGVSFYYIGRSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWLGVDQEDLAGSFSIS 168 (327)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~ 168 (327)
++.|++........+.|+++++++.+++++++.|+++++++++++|||++++++.+++++++|+.+...++ .++++.
T Consensus 118 lp~gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~---~~~~~~ 194 (350)
T PTZ00343 118 LPQGLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKE---LHFTWL 194 (350)
T ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheeccc---chhHHH
Confidence 99999988667777899999999999999999999999999999999999999999999999999976533 456788
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCC-----CCceehhhhhhHHHHHHHHHHHHHcCcc--cccc-----cccccchhH
Q psy14376 169 GTVYGVIASASLALYSIHTKKVLPCVN-----NEIWLLSYYNNVYSSIILLFVSGLFGEL--KTVQ-----DYADLNTAY 236 (327)
Q Consensus 169 G~~~~l~s~~~~a~~~v~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~ 236 (327)
|++++++|++++|.++++.||..++++ .++.+...++.+.+.++++|+....+.. ...+ .........
T Consensus 195 G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 274 (350)
T PTZ00343 195 AFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGI 274 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHH
Confidence 999999999999999999999887643 3455566677889999999988755321 1111 001111122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHhhhcchHHHHHHHHHHHhCCccchhhhhHHHHHHhhhhhhhhc
Q psy14376 237 FWLFLPIGGLCGFAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFV 311 (327)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~v~~~i~~~~~~~e~~~~~~~iG~~lii~g~~l~~~~ 311 (327)
.+..++..++..++.+...+..+++.+|.+.++..+++|++++++|++++||++|+.+++|.++++.|+.+|++.
T Consensus 275 ~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~ 349 (350)
T PTZ00343 275 IIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF 349 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence 233445556666666777778999999999999999999999999999999999999999999999999999875
No 3
>KOG1442|consensus
Probab=100.00 E-value=3.4e-36 Score=250.59 Aligned_cols=317 Identities=54% Similarity=0.898 Sum_probs=292.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCChhHHHHHHHHHHHHHHHHHHHHhhhccCccccCCCCCCCChh
Q psy14376 6 LVSRYVKITLAVSLYWLVSIITVFVNKALLSE--LKLDAPLFITWFQCVISAFLCIFLHIFSLFFPNILTFPTGNPFRLN 83 (327)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~s~~~~~~~k~~l~~--~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~ 83 (327)
.......+...+..+|..|++..+.||+++.. ...+.|++.++.|.++...+...+...-++.+....+|+ .+.|.+
T Consensus 22 l~~n~~~v~~~vs~ywv~SI~~vf~nk~llss~~~~Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~-~~ldl~ 100 (347)
T KOG1442|consen 22 LEANAKQVDSAVSLYWVTSIGLVFLNKHLLSSLVVILDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPS-LQLDLA 100 (347)
T ss_pred HHHhhhchhhhccceeeeeehhhhhHHHHhhchhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCc-ccccHH
Confidence 35556677789999999999999999999985 446789999999999999999998887776666667776 668888
Q ss_pred hHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhhheeccCCcCc
Q psy14376 84 TLINVLPLSILFMSMISFNNLCLKNVGVSFYYIGRSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWLGVDQEDLAG 163 (327)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~~~~~ 163 (327)
..++..++++.+..++.++|++|+|++++++.+-+++..+|+.+++++++|+|-+.....|+++.+.|..+.+++|+.++
T Consensus 101 t~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~~~~ 180 (347)
T KOG1442|consen 101 TARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEGSTG 180 (347)
T ss_pred HHHhhcchhheeeeehhccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheeccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998887778
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceehhhhhhHHHHHHHHHHHHHcCcccccccccccchhHHHHHHHH
Q psy14376 164 SFSISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPI 243 (327)
Q Consensus 164 ~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (327)
..++.|.++++.|+++-|+..+++||...+.+...|.+++|+++.+.+..+|...+.||...++.++..++..+|..+.+
T Consensus 181 ~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtL 260 (347)
T KOG1442|consen 181 TLSWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTL 260 (347)
T ss_pred ccchhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHH
Confidence 89999999999999999999999999988888789999999999999999999999999888888888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHhcchhhHHhhhcchHHHHHHHHHHHhCCccchhhhhHHHHHHhhhhhhhhccchhHHHhhhcc
Q psy14376 244 GGLCGFAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFVKQREMEAQYNNK 323 (327)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~v~~~i~~~~~~~e~~~~~~~iG~~lii~g~~l~~~~~~~~~~~~~~~~ 323 (327)
+|++++.++|...+.+|.++|.+.++.+..+.+..+++++..++|..+...|-|-.+++.|...|.+.|+++++++++++
T Consensus 261 sglfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~~~~~~ 340 (347)
T KOG1442|consen 261 SGLFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRKASAQR 340 (347)
T ss_pred HHHHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHhhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988877766544
No 4
>KOG1444|consensus
Probab=100.00 E-value=1.9e-31 Score=229.21 Aligned_cols=309 Identities=21% Similarity=0.332 Sum_probs=270.2
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHhhhccCccccCCCCCCC
Q psy14376 1 MTEGTLVSRYVKITLAVSLYWLVSIITVFVNKALLSELKLDAPLFITWFQCVISAFLCIFLHIFSLFFPNILTFPTGNPF 80 (327)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~k~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~ 80 (327)
|.+++..+....-...+..|+.+|..++++||+++++++||..+.+...|.+.+.+.+......+-. +.| ++
T Consensus 1 ~~~~~~~~~~~~~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv-----~~~---~l 72 (314)
T KOG1444|consen 1 MRSDEGSKKQSSPLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLV-----NFR---PL 72 (314)
T ss_pred CCccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhcee-----ecC---Cc
Confidence 4556667777777789999999999999999999999988777777789999999998876655432 344 39
Q ss_pred ChhhHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhhheeccCC
Q psy14376 81 RLNTLINVLPLSILFMSMISFNNLCLKNVGVSFYYIGRSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWLGVDQED 160 (327)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~~ 160 (327)
|++..|++++.++++.++...+..+++|++++.++++++.+|+++++.+..++|.|+++..|.++....+|......++
T Consensus 73 ~~~~~kk~~P~~~lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d- 151 (314)
T KOG1444|consen 73 DLRTAKKWFPVSLLFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTD- 151 (314)
T ss_pred ChHHHHHHccHHHHHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhcccc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988855433
Q ss_pred cCcccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceehhhhhhHHHHHHHHHHHHHcCccccc-ccccccchhHHHH
Q psy14376 161 LAGSFSISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTV-QDYADLNTAYFWL 239 (327)
Q Consensus 161 ~~~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 239 (327)
..++..|..|++...++.+.+.++.|+..+..+.+.+++++|.++++.+.+.....+.||.+.. .+...+.+..++.
T Consensus 152 --~sf~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~ 229 (314)
T KOG1444|consen 152 --LSFNLRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLV 229 (314)
T ss_pred --ceecchhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHH
Confidence 4567679999999999999999999999998888999999999999999999999999887621 2233456677889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhhHHhhhcchHHHHHHHHHHHhCCccchhhhhHHHHHHhhhhhhhhccchhHHHh
Q psy14376 240 FLPIGGLCGFAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFVKQREMEAQ 319 (327)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~v~~~i~~~~~~~e~~~~~~~iG~~lii~g~~l~~~~~~~~~~~~ 319 (327)
.+.++|+++++++|+.+++.+..+|++.++++......+.+.+.+++|++.++...+|..+-+.|.++|++.++++++.+
T Consensus 230 ~~~lScv~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~~~ 309 (314)
T KOG1444|consen 230 VMLLSCVMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKKQP 309 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhccCC
Confidence 99999999999999999999999999999999777777777778888999999999999999999999999876665544
Q ss_pred h
Q psy14376 320 Y 320 (327)
Q Consensus 320 ~ 320 (327)
+
T Consensus 310 ~ 310 (314)
T KOG1444|consen 310 P 310 (314)
T ss_pred C
Confidence 3
No 5
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=100.00 E-value=1.7e-30 Score=236.22 Aligned_cols=300 Identities=10% Similarity=0.063 Sum_probs=222.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHhhhccCccccCCCCCCCChhhHH
Q psy14376 7 VSRYVKITLAVSLYWLVSIITVFVNKALLSELKLDAPLFITWFQCVISAFLCIFLHIFSLFFPNILTFPTGNPFRLNTLI 86 (327)
Q Consensus 7 ~~~~~~~~~~~~~~~~~s~~~~~~~k~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 86 (327)
.+|..+..++.+.--.++.+...+.|..+++ |. +|..+.++|+.++.+++.++...+++++ +.|+ .+++++.
T Consensus 8 ~~~~~~~~~~~~~~q~~~~~~~~~~k~a~~~-G~-~~~~~~~~R~~iA~l~Ll~~~~~~~~~~---~~~~---~~~~~~~ 79 (358)
T PLN00411 8 WRREAVFLTAMLATETSVVGISTLFKVATSK-GL-NIYPFLGYSYLLASLLLLPSLFFTNRSR---SLPP---LSVSILS 79 (358)
T ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHHHHC-CC-CccHHHHHHHHHHHHHHHHHHHHHHHhc---ccCc---chHHHHH
Confidence 4445555556666666666666777999964 78 5888999999999988887765543211 2232 3466677
Q ss_pred HHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHHHH------hcccccchhhHHHHHHhhhhhheeccCC
Q psy14376 87 NVLPLSILFMSMISFNNLCLKNVGVSFYYIGRSLTTVFNVLFSYFL------LAQKTSFSACVCCGIIVMGFWLGVDQED 160 (327)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~pi~~~i~~~~~------~~e~~s~~~~~~~~l~~~Gv~l~~~~~~ 160 (327)
.+...+++...+..+.+.+++|++++.++++.++.|++++++++++ +|||++++++.|++++++|+.++....+
T Consensus 80 ~l~l~g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g 159 (358)
T PLN00411 80 KIGLLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHG 159 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccC
Confidence 7777777765566688999999999999999999999999999999 6999999999999999999988543111
Q ss_pred c---------------------Ccccc-hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceehhhhhhHHHHHHHHHHHH
Q psy14376 161 L---------------------AGSFS-ISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSG 218 (327)
Q Consensus 161 ~---------------------~~~~~-~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 218 (327)
. +...+ ..|+++.++|+++||+|++.+|+..++++ +....+.+++.++.+...+...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~l 238 (358)
T PLN00411 160 PRVFVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYP-AAFTVSFLYTVCVSIVTSMIGL 238 (358)
T ss_pred cccccccccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-cHhHHHHHHHHHHHHHHHHHHH
Confidence 0 01122 45999999999999999999999888763 3446666777777776666555
Q ss_pred HcCcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHhhhcchHHHHHHHHHHHhCCccchhhhhHH
Q psy14376 219 LFGELKTVQDYADLNTAYFWLFLPIGGLCGFAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSN 298 (327)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~v~~~i~~~~~~~e~~~~~~~iG~ 298 (327)
..++. +........+...+ .+++.++.+.+.++..++++++.+|...++..+++|++++++|++++||++++.+++|+
T Consensus 239 ~~~~~-~~~~~~~~~~~~~~-~i~y~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~ 316 (358)
T PLN00411 239 VVEKN-NPSVWIIHFDITLI-TIVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGG 316 (358)
T ss_pred HHccC-CcccceeccchHHH-HHHHHHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 54221 11111111122222 35556665544444456899999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhhccchhHH
Q psy14376 299 WVVLFGSAAYTFVKQREME 317 (327)
Q Consensus 299 ~lii~g~~l~~~~~~~~~~ 317 (327)
++++.|+++..+.++++.+
T Consensus 317 ~LIl~Gv~l~~~~~~~~~~ 335 (358)
T PLN00411 317 ILITLGFYAVMWGKANEEK 335 (358)
T ss_pred HHHHHHHHHHHhhhhhhhh
Confidence 9999999998865554433
No 6
>KOG1441|consensus
Probab=99.97 E-value=2.4e-31 Score=233.80 Aligned_cols=301 Identities=24% Similarity=0.306 Sum_probs=254.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHhhhccCccccCCCCCCCChhhH
Q psy14376 6 LVSRYVKITLAVSLYWLVSIITVFVNKALLSELKLDAPLFITWFQCVISAFLCIFLHIFSLFFPNILTFPTGNPFRLNTL 85 (327)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~s~~~~~~~k~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~ 85 (327)
..++......+...|+.+++...+.||++++.++|+.|..++..+.+.+.+.......++-.+++ +. .++..+
T Consensus 11 ~~~~~~~~~~~~~~w~~~~v~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~--~~-----~~~~~~ 83 (316)
T KOG1441|consen 11 QLKKILRIGIAFAIWYVLSVGVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPS--KI-----SSKLPL 83 (316)
T ss_pred ccchhHHHHHHHHHHhhhheeeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCC--cc-----ccccch
Confidence 45567777889999999999999999999998899999999999999998888887776543221 11 234568
Q ss_pred HHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhhheeccCCcCccc
Q psy14376 86 INVLPLSILFMSMISFNNLCLKNVGVSFYYIGRSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWLGVDQEDLAGSF 165 (327)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~~~~~~~ 165 (327)
+.++++|+..+.+..++|.+++|+|+++++++++++|+++.++++++.+|++++..+++++....|+.+.+.. |.++
T Consensus 84 ~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~---e~~f 160 (316)
T KOG1441|consen 84 RTLLPLGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVT---ELSF 160 (316)
T ss_pred HHHHHHHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeec---cccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999997763 3679
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhc--CCCCCCceehhhhhhHHHHHHHH-HHHHHcCcccccccccccchhHHHHHHH
Q psy14376 166 SISGTVYGVIASASLALYSIHTKKVL--PCVNNEIWLLSYYNNVYSSIILL-FVSGLFGELKTVQDYADLNTAYFWLFLP 242 (327)
Q Consensus 166 ~~~G~~~~l~s~~~~a~~~v~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (327)
|+.|.+.++++.+..+..+++.|+.. ++++.++.+.+.|+...+.+.++ |+....+............+..++..+.
T Consensus 161 n~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (316)
T KOG1441|consen 161 NLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLL 240 (316)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHH
Confidence 99999999999999999999999998 45667999999999999999999 7766643221110011112223344434
Q ss_pred HHHHHHHHHHHHHHHHHHhcchhhHHhhhcchHHHHHHHHHHHhCCccchhhhhHHHHHHhhhhhhhhccchhHH
Q psy14376 243 IGGLCGFAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFVKQREME 317 (327)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~v~~~i~~~~~~~e~~~~~~~iG~~lii~g~~l~~~~~~~~~~ 317 (327)
.. ++++..|.+.+..+++++|++.++.+.++.+..+..|+++|+|+.|+.+.+|..+.+.|+.+|++.|.++++
T Consensus 241 ~s-v~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~ 314 (316)
T KOG1441|consen 241 NS-VLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKK 314 (316)
T ss_pred HH-HHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhc
Confidence 44 899999999999999999999999999999999999999999999999999999999999999987665543
No 7
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.97 E-value=9.6e-29 Score=221.83 Aligned_cols=276 Identities=20% Similarity=0.273 Sum_probs=228.0
Q ss_pred HHHHHHHhcCCC-ChhHHHHHHHHHHHHHHHHHHHHhhhccCccccCCCCCCCChhhHHHHHHHHHHHHHHHHHhccccc
Q psy14376 29 FVNKALLSELKL-DAPLFITWFQCVISAFLCIFLHIFSLFFPNILTFPTGNPFRLNTLINVLPLSILFMSMISFNNLCLK 107 (327)
Q Consensus 29 ~~~k~~l~~~~~-~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 107 (327)
+..+.+.++... ++|.++++.|+....+...+.....+. ++ .++..++++.+.++++.....+.|.+++
T Consensus 17 ~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~-~~---------~~~~~~~~~~~~~~~~~~~~~~~~~al~ 86 (303)
T PF08449_consen 17 ILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKF-PK---------SRKIPLKKYAILSFLFFLASVLSNAALK 86 (303)
T ss_pred HHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccc-cC---------CCcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555543333 379999999999999888877765541 11 1223378889999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhhheeccCCcC----cc---cchhHHHHHHHHHHHH
Q psy14376 108 NVGVSFYYIGRSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWLGVDQEDLA----GS---FSISGTVYGVIASASL 180 (327)
Q Consensus 108 ~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~~~~----~~---~~~~G~~~~l~s~~~~ 180 (327)
|+|.+..++++++.|+++++++.+++|||+++++++++++..+|+++...++..+ .+ .+..|+++.+.|.++.
T Consensus 87 ~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~ 166 (303)
T PF08449_consen 87 YISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLLD 166 (303)
T ss_pred hCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999954433211 11 1224999999999999
Q ss_pred HHHHHHHHhhcCCCCCCceehhhhhhHHHHHHHHHHHHH--cCcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14376 181 ALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGL--FGELKTVQDYADLNTAYFWLFLPIGGLCGFAIGYVTTLQ 258 (327)
Q Consensus 181 a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (327)
|.+.+++||..++++.++++.++|++.++.+..++.... .+|..+..+... .++..+..++..++++++.+...+..
T Consensus 167 a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~-~~p~~~~~l~~~s~~~~~g~~~i~~~ 245 (303)
T PF08449_consen 167 AFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFIS-AHPSVLLYLLLFSLTGALGQFFIFYL 245 (303)
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999888888 666555444322 23334666677778888888888889
Q ss_pred HHhcchhhHHhhhcchHHHHHHHHHHHhCCccchhhhhHHHHHHhhhhhhhhccchh
Q psy14376 259 IKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFVKQRE 315 (327)
Q Consensus 259 ~~~~~a~~~~~~~~~~~v~~~i~~~~~~~e~~~~~~~iG~~lii~g~~l~~~~~~~~ 315 (327)
+++.+|++.++.+.+|+..++++++++||+++++.+|+|.++++.|..++.+.++++
T Consensus 246 ~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~ 302 (303)
T PF08449_consen 246 IKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK 302 (303)
T ss_pred HHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence 999999999999999999999999999999999999999999999999998866544
No 8
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.97 E-value=1.7e-27 Score=212.84 Aligned_cols=279 Identities=16% Similarity=0.134 Sum_probs=214.3
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHhhhccCccccCCCCCCCChh
Q psy14376 4 GTLVSRYVKITLAVSLYWLVSIITVFVNKALLSELKLDAPLFITWFQCVISAFLCIFLHIFSLFFPNILTFPTGNPFRLN 83 (327)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~k~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~ 83 (327)
++..+-...++....+|+...... |...++ . +|..+++.|+..+.+++.++...+++ +. .+++
T Consensus 4 ~~~~~~~~~~~~~~~iWg~~~~~~----K~~~~~--~-~p~~~~~~R~~~a~l~ll~~~~~~~~-----~~-----~~~~ 66 (292)
T PRK11272 4 RQLLPLFGALFALYIIWGSTYLVI----RIGVES--W-PPLMMAGVRFLIAGILLLAFLLLRGH-----PL-----PTLR 66 (292)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHH----HHHhcc--C-CHHHHHHHHHHHHHHHHHHHHHHhCC-----CC-----CcHH
Confidence 344444555666777777766654 988874 4 79999999999999888877654321 11 1245
Q ss_pred hHHHHHHHHHHH-HHHHHHhcccc-cccchhHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhhheeccCCc
Q psy14376 84 TLINVLPLSILF-MSMISFNNLCL-KNVGVSFYYIGRSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWLGVDQEDL 161 (327)
Q Consensus 84 ~~~~~~~~~~~~-~~~~~~~~~~l-~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~~~ 161 (327)
++++....|.+. .....+.+.+. ++++++.++++.++.|+++++++++ +|||++++++.+++++++|+.+...++.
T Consensus 67 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~- 144 (292)
T PRK11272 67 QWLNAALIGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGN- 144 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcc-
Confidence 566666667664 45666777888 9999999999999999999999986 6999999999999999999988654322
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceehhhhhhHHHHHHHHHHHHHcCcccccccccccchhHHHHHH
Q psy14376 162 AGSFSISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFL 241 (327)
Q Consensus 162 ~~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (327)
.+.+..|++++++|+++||.|.+..||..++ ++.....+++..+++.+.+.....++... ...+...|..+
T Consensus 145 -~~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~i 215 (292)
T PRK11272 145 -LSGNPWGAILILIASASWAFGSVWSSRLPLP---VGMMAGAAEMLAAGVVLLIASLLSGERLT-----ALPTLSGFLAL 215 (292)
T ss_pred -cccchHHHHHHHHHHHHHHHHHHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHHcCCccc-----ccCCHHHHHHH
Confidence 2345679999999999999999999986543 23456678888888888777665433211 11233446666
Q ss_pred HHHHHHHHHHHHH-HHHHHHhcchhhHHhhhcchHHHHHHHHHHHhCCccchhhhhHHHHHHhhhhhhhh
Q psy14376 242 PIGGLCGFAIGYV-TTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTF 310 (327)
Q Consensus 242 ~~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~v~~~i~~~~~~~e~~~~~~~iG~~lii~g~~l~~~ 310 (327)
.+.++++....|. .++.+++.++...+.+.+++|+.+.+++++++||++++.+++|+++++.|+++.+.
T Consensus 216 ~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~ 285 (292)
T PRK11272 216 GYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTL 285 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 7777777666554 45789999999999999999999999999999999999999999999999988654
No 9
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.97 E-value=1.5e-27 Score=213.84 Aligned_cols=281 Identities=14% Similarity=0.136 Sum_probs=203.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHhhhccCccccCCCCCCCChhhHHHH
Q psy14376 9 RYVKITLAVSLYWLVSIITVFVNKALLSELKLDAPLFITWFQCVISAFLCIFLHIFSLFFPNILTFPTGNPFRLNTLINV 88 (327)
Q Consensus 9 ~~~~~~~~~~~~~~~s~~~~~~~k~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 88 (327)
+....+++..+|+...... |..+++ + +|..+.++|+.++.+.+.++. .+ + +.+ ++..
T Consensus 5 ~~l~~l~~~~~Wg~~~~~~----k~~~~~--~-~p~~~~~~R~~~a~~~l~~~~--~~--~---~~~---------~~~~ 61 (299)
T PRK11453 5 DGVLALLVVVVWGLNFVVI----KVGLHN--M-PPLMLAGLRFMLVAFPAIFFV--AR--P---KVP---------LNLL 61 (299)
T ss_pred HHHHHHHHHHHHhhhHHHH----HHHHhc--C-CHHHHHHHHHHHHHHHHHHHh--cC--C---CCc---------hHHH
Confidence 3455667778888877755 988875 4 799999999998776654432 11 1 111 2334
Q ss_pred HHHHHHHH-HHHHHhcccccc-cchhHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhhheeccCCcCcccc
Q psy14376 89 LPLSILFM-SMISFNNLCLKN-VGVSFYYIGRSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWLGVDQEDLAGSFS 166 (327)
Q Consensus 89 ~~~~~~~~-~~~~~~~~~l~~-~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~~~~~~~~ 166 (327)
...+++.. ....+.+.+++| .+++.++++.++.|+++.+++++++|||++++++.+++++++|+.+...+..++.+.+
T Consensus 62 ~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~ 141 (299)
T PRK11453 62 LGYGLTISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQHVA 141 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCcchh
Confidence 44454432 444456677887 6889999999999999999999999999999999999999999998765432223345
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCCCC-CceehhhhhhHHHHHHHHHHHHHcCcccccccccccchhHHHHHHHHHH
Q psy14376 167 ISGTVYGVIASASLALYSIHTKKVLPCVNN-EIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGG 245 (327)
Q Consensus 167 ~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (327)
..|+++++.++++||.|.++.||..++.+. +......++...+.+.........++...........+...|..+++.+
T Consensus 142 ~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 221 (299)
T PRK11453 142 MLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLA 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHH
Confidence 679999999999999999999997654321 2223344555554444443333332221110000122345577788888
Q ss_pred HHHHHHHHHH-HHHHHhcchhhHHhhhcchHHHHHHHHHHHhCCccchhhhhHHHHHHhhhhhhhhcc
Q psy14376 246 LCGFAIGYVT-TLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFVK 312 (327)
Q Consensus 246 ~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~v~~~i~~~~~~~e~~~~~~~iG~~lii~g~~l~~~~~ 312 (327)
+++....|.. ++.+++.++...+.+.+++|+.+.++|++++||++++.+++|+++++.|+.+..+.+
T Consensus 222 i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~ 289 (299)
T PRK11453 222 FVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGL 289 (299)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcch
Confidence 8888877765 477899999999999999999999999999999999999999999999998776544
No 10
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.96 E-value=2.9e-27 Score=211.50 Aligned_cols=272 Identities=13% Similarity=0.003 Sum_probs=193.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHhhhccCccccCCCCCCCChhhHHH
Q psy14376 8 SRYVKITLAVSLYWLVSIITVFVNKALLSELKLDAPLFITWFQCVISAFLCIFLHIFSLFFPNILTFPTGNPFRLNTLIN 87 (327)
Q Consensus 8 ~~~~~~~~~~~~~~~~s~~~~~~~k~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 87 (327)
+.....+.++.+|+..... .|..+++ + +|..+.+.|+.++.+++.++. .+ ++ .+ +++++.
T Consensus 4 ~~~l~~l~a~~~Wg~~~~~----~k~~~~~--~-~P~~~~~~R~~~a~l~l~~~~--~~--~~---~~------~~~~~~ 63 (295)
T PRK11689 4 KATLIGLIAILLWSTMVGL----IRGVSES--L-GPVGGAAMIYSVSGLLLLLTV--GF--PR---LR------QFPKRY 63 (295)
T ss_pred chhHHHHHHHHHHHHHHHH----HHHHHcc--C-ChHHHHHHHHHHHHHHHHHHc--cc--cc---cc------cccHHH
Confidence 4455566677777765554 4998875 4 799999999999988877643 11 11 11 111233
Q ss_pred HHHHHHHHHHHHHHhccccc----ccchhHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhhheeccCCc-C
Q psy14376 88 VLPLSILFMSMISFNNLCLK----NVGVSFYYIGRSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWLGVDQEDL-A 162 (327)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~~~-~ 162 (327)
....++....+..+.+.+++ +.+++.++++.++.|+++.+++++++|||++++++.+++++++|++++..++.. +
T Consensus 64 ~~~~~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~ 143 (295)
T PRK11689 64 LLAGGLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLS 143 (295)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccch
Confidence 44444444566666666654 567888899999999999999999999999999999999999999987654321 1
Q ss_pred -------cccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceehhhhhhHHHHHHHHHHHHHcCcccccccccccchh
Q psy14376 163 -------GSFSISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTA 235 (327)
Q Consensus 163 -------~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (327)
...+..|+++++.|+++||.|.++.||..+++ ++.... . ..+...+.+.....++. .. . .+.
T Consensus 144 ~~~~~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~--~~~~~~--~-~~~~~~l~~~~~~~~~~--~~---~-~~~ 212 (295)
T PRK11689 144 LAELINNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGK--NGITLF--F-ILTALALWIKYFLSPQP--AM---V-FSL 212 (295)
T ss_pred hhhhhhccccChHHHHHHHHHHHHHHHHHHHHhhccCCC--CchhHH--H-HHHHHHHHHHHHHhcCc--cc---c-CCH
Confidence 12345699999999999999999999986653 443322 2 23333443333333221 11 1 122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHhhhcchHHHHHHHHHHHhCCccchhhhhHHHHHHhhhhhhhh
Q psy14376 236 YFWLFLPIGGLCGFAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTF 310 (327)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~v~~~i~~~~~~~e~~~~~~~iG~~lii~g~~l~~~ 310 (327)
..|..+++.++.+...++..++.+++.++...+...+++|++++++|++++||++++.+++|+++++.|+.+...
T Consensus 213 ~~~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 213 PAIIKLLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL 287 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence 335555566654444455567899999999999999999999999999999999999999999999999987754
No 11
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.96 E-value=3.3e-27 Score=211.31 Aligned_cols=286 Identities=11% Similarity=0.039 Sum_probs=199.9
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHhhhccCccccCCCCCCC
Q psy14376 1 MTEGTLVSRYVKITLAVSLYWLVSIITVFVNKALLSELKLDAPLFITWFQCVISAFLCIFLHIFSLFFPNILTFPTGNPF 80 (327)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~k~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~ 80 (327)
|..++..+.....+++..+|+...... |.. . +. +|..+.++|+.++.+.+.++...+++++. ..++ ..
T Consensus 1 ~~~~~~~~g~~~~l~a~~~wg~~~~~~----k~~-~--~~-~~~~~~~~R~~~a~~~l~~~~~~~~~~~~--~~~~--~~ 68 (296)
T PRK15430 1 MDAKQTRQGVLLALAAYFIWGIAPAYF----KLI-Y--YV-PADEILTHRVIWSFFFMVVLMSICRQWSY--LKTL--IQ 68 (296)
T ss_pred CCchhhhhHHHHHHHHHHHHHHHHHHH----HHh-c--CC-CHHHHHHHHHHHHHHHHHHHHHHHccHHH--HHHH--Hc
Confidence 444556778888888888998877755 765 3 35 69999999999998866655433221110 0000 01
Q ss_pred ChhhHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhhheeccCC
Q psy14376 81 RLNTLINVLPLSILFMSMISFNNLCLKNVGVSFYYIGRSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWLGVDQED 160 (327)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~~ 160 (327)
+++++......++....++.+++++++++|++.++++.++.|+++++++++++|||++++++.+++++++|++++..+++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~ 148 (296)
T PRK15430 69 TPQKIFMLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFG 148 (296)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcC
Confidence 23333333344455667899999999999999999999999999999999999999999999999999999998664321
Q ss_pred cCcccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceehhhhhhHHHHHHHHHHHHHcCcccccccccccchhHHHHH
Q psy14376 161 LAGSFSISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLF 240 (327)
Q Consensus 161 ~~~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (327)
+.. .++++++++||.|.+..||..++...+......++..++.+...+.. .+..... .......+..
T Consensus 149 ---~~~----~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~---~~~~~~~~~~ 215 (296)
T PRK15430 149 ---SLP----IIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIA---DSSTSHM---GQNPMSLNLL 215 (296)
T ss_pred ---Ccc----HHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHc---cCCcccc---cCCcHHHHHH
Confidence 111 46888999999999999886442211222333444444443322211 1111000 1111112333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcchhhHHhhhcchHHHHHHHHHHHhCCccchhhhhHHHHHHhhhhhhhhc
Q psy14376 241 LPIGGLCGFAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFV 311 (327)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~v~~~i~~~~~~~e~~~~~~~iG~~lii~g~~l~~~~ 311 (327)
+...++.+.+.++..++.+++.+|...+.+.+++|+++.++|++++||++++.+++|+++++.|+.+....
T Consensus 216 ~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~ 286 (296)
T PRK15430 216 LIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMD 286 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555556678999999999999999999999999999999999999999999998888876643
No 12
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.96 E-value=3.5e-26 Score=204.32 Aligned_cols=272 Identities=12% Similarity=0.109 Sum_probs=208.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHhhhccCccccCCCCCCCChhhH
Q psy14376 6 LVSRYVKITLAVSLYWLVSIITVFVNKALLSELKLDAPLFITWFQCVISAFLCIFLHIFSLFFPNILTFPTGNPFRLNTL 85 (327)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~s~~~~~~~k~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~ 85 (327)
..+....+++++.+|...+.. .|+.+++ + +|..+.++|++++.+++.++...++ + + .+++++
T Consensus 10 ~~~~~~~~~la~~~~~~~~~~----~K~~~~~--~-~~~~~~~~R~~~a~l~l~~~~~~~~--~---~------~~~~~~ 71 (293)
T PRK10532 10 VWLPILLLLIAMASIQSGASL----AKSLFPL--V-GAPGVTALRLALGTLILIAIFKPWR--L---R------FAKEQR 71 (293)
T ss_pred cchHHHHHHHHHHHHHhhHHH----HHHHHHH--c-CHHHHHHHHHHHHHHHHHHHHhHHh--c---c------CCHHHH
Confidence 456677778888888876664 4999985 4 7899999999999888876542211 0 1 345667
Q ss_pred HHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhhheeccCCcCccc
Q psy14376 86 INVLPLSILFMSMISFNNLCLKNVGVSFYYIGRSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWLGVDQEDLAGSF 165 (327)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~~~~~~~ 165 (327)
+.....|++......+.+.+++|+|++.++++..+.|+++.+++ +||.++ ..++.++++|+.++..++.+..+.
T Consensus 72 ~~~~~~g~~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~~--~~~~~i~~~Gv~li~~~~~~~~~~ 145 (293)
T PRK10532 72 LPLLFYGVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPVD--FVWVVLAVLGLWFLLPLGQDVSHV 145 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChHH--HHHHHHHHHHHheeeecCCCcccC
Confidence 77778888777778888899999999999999999999999887 355544 445667899998865433222334
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceehhhhhhHHHHHHHHHHHHHcCcccccccccccchhHHHHHHHHHH
Q psy14376 166 SISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGG 245 (327)
Q Consensus 166 ~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (327)
+..|++++++++++||.|.+..||..+++ ++... .+...++++.+.|+....+. .. ..+...|..+++.+
T Consensus 146 ~~~G~ll~l~aa~~~a~~~v~~r~~~~~~--~~~~~-~~~~~~~~~~l~~~~~~~~~-~~------~~~~~~~~~~l~lg 215 (293)
T PRK10532 146 DLTGAALALGAGACWAIYILSGQRAGAEH--GPATV-AIGSLIAALIFVPIGALQAG-EA------LWHWSILPLGLAVA 215 (293)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhccC--CchHH-HHHHHHHHHHHHHHHHHccC-cc------cCCHHHHHHHHHHH
Confidence 56799999999999999999999987654 44444 45667777777776665422 11 11223344456777
Q ss_pred HHHHHHHHHH-HHHHHhcchhhHHhhhcchHHHHHHHHHHHhCCccchhhhhHHHHHHhhhhhhhhc
Q psy14376 246 LCGFAIGYVT-TLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFV 311 (327)
Q Consensus 246 ~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~v~~~i~~~~~~~e~~~~~~~iG~~lii~g~~l~~~~ 311 (327)
+++...+|.. ++.+++.++...+.+.+++|+++.++|++++||+++..+++|+++++.|++.+...
T Consensus 216 v~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~ 282 (293)
T PRK10532 216 ILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLT 282 (293)
T ss_pred HHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhc
Confidence 7877777754 78999999999999999999999999999999999999999999999999988654
No 13
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.95 E-value=1.4e-25 Score=197.35 Aligned_cols=251 Identities=16% Similarity=0.178 Sum_probs=197.9
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHhhhccCccccCCCCCCCChhhHHHHHHHHHH-HHHHHHHhcccccc
Q psy14376 30 VNKALLSELKLDAPLFITWFQCVISAFLCIFLHIFSLFFPNILTFPTGNPFRLNTLINVLPLSIL-FMSMISFNNLCLKN 108 (327)
Q Consensus 30 ~~k~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~ 108 (327)
..|+.+++ .. +|..+.++|++.+.+.+.+....+ + ++++++.....+.+ ...+..+.+.|++|
T Consensus 7 ~~k~~~~~-~~-~~~~~~~~r~~~~~l~l~~~~~~~---------~-----~~~~~~~~~~~~~~~~~l~~~~~~~a~~~ 70 (260)
T TIGR00950 7 VIGQYLEG-QV-PLYFAVFRRLIFALLLLLPLLRRR---------P-----PLKRLLRLLLLGALQIGVFYVLYFVAVKR 70 (260)
T ss_pred HHHHHHhc-CC-CHHHHHHHHHHHHHHHHHHHHHhc---------c-----CHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45988874 34 789999999999988877654322 1 12224455555554 46788899999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhhheeccCCcCcccchhHHHHHHHHHHHHHHHHHHHH
Q psy14376 109 VGVSFYYIGRSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWLGVDQEDLAGSFSISGTVYGVIASASLALYSIHTK 188 (327)
Q Consensus 109 ~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~~ 188 (327)
++++.++++.++.|+++++++.+++|||++++++.+++++++|+.+...++ +.+.+..|+.+++.|+++|+.+.+..|
T Consensus 71 ~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~--~~~~~~~G~~~~l~a~~~~a~~~~~~k 148 (260)
T TIGR00950 71 LPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDG--NLSINPAGLLLGLGSGISFALGTVLYK 148 (260)
T ss_pred cChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCC--cccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999865443 234456799999999999999999999
Q ss_pred hhcCCCCCCceehhhhhhHHHHHHHHHHHHHcCcccccccccccchhHHHHHHHHHHHHHHHHHHH-HHHHHHhcchhhH
Q psy14376 189 KVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGGLCGFAIGYV-TTLQIKITSPLTH 267 (327)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~ 267 (327)
+..++.+.++.....+++..+.+.+.+.....++.... +...|..+++.++++....|. .++.+++.++...
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 221 (260)
T TIGR00950 149 RLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQA-------LSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAA 221 (260)
T ss_pred HHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-------chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHH
Confidence 98776543344455567788888888877765432211 223355566667776655554 4678999999999
Q ss_pred HhhhcchHHHHHHHHHHHhCCccchhhhhHHHHHHhhh
Q psy14376 268 NISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGS 305 (327)
Q Consensus 268 ~~~~~~~~v~~~i~~~~~~~e~~~~~~~iG~~lii~g~ 305 (327)
+.+.+++|+.+.+++++++||+++..+++|..+++.|+
T Consensus 222 s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 222 SILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999886
No 14
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.95 E-value=3.7e-25 Score=197.26 Aligned_cols=272 Identities=15% Similarity=0.198 Sum_probs=204.6
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHhhhccCccccCCCCCCCChhhHHHHHHHHHHHHHHHHHhcccccccc
Q psy14376 31 NKALLSELKLDAPLFITWFQCVISAFLCIFLHIFSLFFPNILTFPTGNPFRLNTLINVLPLSILFMSMISFNNLCLKNVG 110 (327)
Q Consensus 31 ~k~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 110 (327)
++.+-++ +.+.|.+-++.-++.-.++.......++..++ ... ..++++.+++.++++....+.+.+.|++|++
T Consensus 32 s~~l~~~-~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~---~~~---~~~~~~w~y~lla~~Dv~aN~~~v~a~~yTs 104 (334)
T PF06027_consen 32 SSLLANK-GVNIPTFQSFFNYVLLALVYTPILLYRRGFKK---WLK---VLKRPWWKYFLLALLDVEANYLVVLAYQYTS 104 (334)
T ss_pred HHHHHhc-CccCcHHHHHHHHHHHHHHHhhhhhhcccccc---chh---hcchhHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3444444 77778877777666555544444333332211 110 1233456677789999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhhheeccCCc------CcccchhHHHHHHHHHHHHHHHH
Q psy14376 111 VSFYYIGRSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWLGVDQEDL------AGSFSISGTVYGVIASASLALYS 184 (327)
Q Consensus 111 ~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~~~------~~~~~~~G~~~~l~s~~~~a~~~ 184 (327)
.+.++++.+++.+++++++++++|+|+++.+++|+++++.|++++...+.. +++...+|+++++.|+++||+++
T Consensus 105 vtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~l~~a~lya~~n 184 (334)
T PF06027_consen 105 VTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLALLGAILYAVSN 184 (334)
T ss_pred HhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999874333211 23456789999999999999999
Q ss_pred HHHHhhcCCCCCCceehhhhhhHHHHHHHHHHHHHcCcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Q psy14376 185 IHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGGLCGFAIGYVTTLQIKITSP 264 (327)
Q Consensus 185 v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 264 (327)
++.|+..++. +..+...+..+++.++..+..... |.....+.+ +. ...+...+..+++-+..+......++..+|
T Consensus 185 V~~E~~v~~~--~~~~~lg~~Glfg~ii~~iq~~il-e~~~i~~~~-w~-~~~~~~~v~~~~~lf~~y~l~p~~l~~ssA 259 (334)
T PF06027_consen 185 VLEEKLVKKA--PRVEFLGMLGLFGFIISGIQLAIL-ERSGIESIH-WT-SQVIGLLVGYALCLFLFYSLVPIVLRMSSA 259 (334)
T ss_pred HHHHHhcccC--CHHHHHHHHHHHHHHHHHHHHHhe-ehhhhhccC-CC-hhhHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 9999999864 677888899999999888877766 444443332 22 222333333344444444444567899999
Q ss_pred hhHHhhhcchHHHHHHHHHHHhCCccchhhhhHHHHHHhhhhhhhhccch
Q psy14376 265 LTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFVKQR 314 (327)
Q Consensus 265 ~~~~~~~~~~~v~~~i~~~~~~~e~~~~~~~iG~~lii~g~~l~~~~~~~ 314 (327)
+..++-.......+.+++++++|+++++..++|.+++++|.++|+..+++
T Consensus 260 t~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~ 309 (334)
T PF06027_consen 260 TFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESP 309 (334)
T ss_pred ceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCc
Confidence 98888778889999999999999999999999999999999999875543
No 15
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.94 E-value=1.5e-25 Score=181.90 Aligned_cols=292 Identities=21% Similarity=0.288 Sum_probs=247.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHhhhccCccccCCCCCCCChhhHHHHHHHHHH
Q psy14376 15 LAVSLYWLVSIITVFVNKALLSELKLDAPLFITWFQCVISAFLCIFLHIFSLFFPNILTFPTGNPFRLNTLINVLPLSIL 94 (327)
Q Consensus 15 ~~~~~~~~~s~~~~~~~k~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 94 (327)
.....|+++|+.+++-||++++..||+-.+.+.+.|...+.+.+.++...+-. +++..+.|.+++.+++
T Consensus 9 ~~~lsYc~sSIlmTltNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~l~~~-----------~fR~t~aK~WfpiSfL 77 (309)
T COG5070 9 TASLSYCFSSILMTLTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKFLRLV-----------EFRLTKAKKWFPISFL 77 (309)
T ss_pred hHHHHHHHHHHHHHHhhHheecCCCCchhhHHHHHHHHHHHHHHHHHHHHhHh-----------heehhhhhhhcCHHHH
Confidence 46778999999999999999999899888999999999999888887765432 1555568899999999
Q ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhhheeccCCcC-----cccchhH
Q psy14376 95 FMSMISFNNLCLKNVGVSFYYIGRSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWLGVDQEDLA-----GSFSISG 169 (327)
Q Consensus 95 ~~~~~~~~~~~l~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~~~~-----~~~~~~G 169 (327)
...+......+++|++++.+++.++++.+.++..+..++|.|.+..+..+-++.+..-.+...++.+. ...| .|
T Consensus 78 Lv~MIyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN-~G 156 (309)
T COG5070 78 LVVMIYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILN-PG 156 (309)
T ss_pred HHHHHHhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccC-Cc
Confidence 99999999999999999999999999999999999999999999999999999988887766554321 1344 39
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCceehhhhhhHHHHHHHHHHHHHcCcccccccccccchhHHHHHHHHHHHHHH
Q psy14376 170 TVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGGLCGF 249 (327)
Q Consensus 170 ~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (327)
.+|+....++.|.+....||..+-.+....+.++|.++.+.++++.+++..+|+++---.+.. ....+..+.++|+++.
T Consensus 157 Y~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl-~~d~l~am~ISgl~sv 235 (309)
T COG5070 157 YLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNL-SVDSLMAMFISGLCSV 235 (309)
T ss_pred eEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCC-ChHHHHHHHHHHHHHh
Confidence 999999999999999999998887677788999999999999999999999776553111111 1222556689999999
Q ss_pred HHHHHHHHHHHhcchhhHHhhhcchHHHHHHHHHHHhCCccchhhhhHHHHHHhhhhhhhhccchhHHHh
Q psy14376 250 AIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFVKQREMEAQ 319 (327)
Q Consensus 250 ~~~~~~~~~~~~~~a~~~~~~~~~~~v~~~i~~~~~~~e~~~~~~~iG~~lii~g~~l~~~~~~~~~~~~ 319 (327)
...|..-|+.+-+++++.++.+.+......+.|.++||||.+.+.+....+=..+..+|.+.++++++++
T Consensus 236 giSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k~q~q 305 (309)
T COG5070 236 GISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKKQQNQ 305 (309)
T ss_pred hhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999998888888888888665544443
No 16
>KOG1443|consensus
Probab=99.92 E-value=1.1e-23 Score=178.87 Aligned_cols=295 Identities=22% Similarity=0.265 Sum_probs=242.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHhhhccCccccCCCCCCCChh-h
Q psy14376 6 LVSRYVKITLAVSLYWLVSIITVFVNKALLSELKLDAPLFITWFQCVISAFLCIFLHIFSLFFPNILTFPTGNPFRLN-T 84 (327)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~s~~~~~~~k~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~-~ 84 (327)
.+.+++.+. .+..|.+.|++..+.+|+...+ ++.|++++.+|+++-+++....+...+.+.++.+ ++++|+ .
T Consensus 11 ~~~rV~~L~-lVl~yY~~Si~Ltf~~~~~~~~--f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r----~~~sw~~~ 83 (349)
T KOG1443|consen 11 LMNRVLTLA-LVLLYYFLSIGLTFYFKWLTKN--FHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRAR----VVLSWRDY 83 (349)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHhhhhhcC--cCCchHHHHHHHHHHHHHHHHHHHHHhccCCccc----cCCcHHHH
Confidence 455555555 5599999999999999988764 5679999999999999998887776554322112 347765 5
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhhheeccCCcCcc
Q psy14376 85 LINVLPLSILFMSMISFNNLCLKNVGVSFYYIGRSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWLGVDQEDLAGS 164 (327)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~~~~~~ 164 (327)
.|+..+.++..+....+.|+++.|++.+.+++.++++++|+.+++.++.-||+++.-.+.+++...|+++.+..+ .+
T Consensus 84 Lr~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~Ks---Tq 160 (349)
T KOG1443|consen 84 LRRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKS---TQ 160 (349)
T ss_pred HHHhhhhhhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecc---cc
Confidence 778889999999999999999999999999999999999999999999889999999999999999999877644 46
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhcCCCC---CCceehhhhhhHHHHHHHHHHHHHcCccccccc-----ccccch-h
Q psy14376 165 FSISGTVYGVIASASLALYSIHTKKVLPCVN---NEIWLLSYYNNVYSSIILLFVSGLFGELKTVQD-----YADLNT-A 235 (327)
Q Consensus 165 ~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~ 235 (327)
++..|..++.+|+++.++-..+++.++++.+ .+|....++..+...+.++|..+..+.+..... .....+ .
T Consensus 161 f~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~ 240 (349)
T KOG1443|consen 161 FNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLIL 240 (349)
T ss_pred eeehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHH
Confidence 8889999999999999999999999888765 379999999999999999998887754433211 111111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHhhhcchHHHHHHHHHHHhCCccchhhhhHHHHHHhhhhhhhh
Q psy14376 236 YFWLFLPIGGLCGFAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTF 310 (327)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~v~~~i~~~~~~~e~~~~~~~iG~~lii~g~~l~~~ 310 (327)
.....+..+|..+++.-.+-+....+++..+.++.+..+.+.+.++|..+.+|+++...|+|..+...|+..+.+
T Consensus 241 rv~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~~~ 315 (349)
T KOG1443|consen 241 RVIGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLHRN 315 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhcc
Confidence 224445677778888877778888999999999999999999999999999999999999999999999998843
No 17
>KOG1581|consensus
Probab=99.91 E-value=3e-22 Score=170.39 Aligned_cols=266 Identities=12% Similarity=0.051 Sum_probs=221.9
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHhhhccCccccCCCCCCCChhhHHHHHHHHHHHHHHHHHhcccccccchhHHHHH
Q psy14376 38 LKLDAPLFITWFQCVISAFLCIFLHIFSLFFPNILTFPTGNPFRLNTLINVLPLSILFMSMISFNNLCLKNVGVSFYYIG 117 (327)
Q Consensus 38 ~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l 117 (327)
..|++|.++.+.|-+++.+.-.++....++. .+ ....+.++...++.......+++.||+|++.++..+-
T Consensus 46 ~rF~~~~fL~~~q~l~~~~~s~~~l~~~k~~-----~~-----~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~La 115 (327)
T KOG1581|consen 46 ERFEHSLFLVFCQRLVALLVSYAMLKWWKKE-----LS-----GVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLA 115 (327)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhccccc-----CC-----CCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHH
Confidence 4588999999999999999887766554332 11 1222677888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhhheeccCCc-----C-cccchhHHHHHHHHHHHHHHHHHHHHhhc
Q psy14376 118 RSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWLGVDQEDL-----A-GSFSISGTVYGVIASASLALYSIHTKKVL 191 (327)
Q Consensus 118 ~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~~~-----~-~~~~~~G~~~~l~s~~~~a~~~v~~~~~~ 191 (327)
+++.-+.+++.+.++.|+|++.+++++..+...|+.+....++. + .++++.|+.++..+.++.++.+..++++.
T Consensus 116 KscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf 195 (327)
T KOG1581|consen 116 KSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLF 195 (327)
T ss_pred HHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHh
Confidence 99999999999999999999999999999999999884332221 1 24678899999999999999999999999
Q ss_pred CCCCCCceehhhhhhHHHHHHHHHHHHHcCcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHhhh
Q psy14376 192 PCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGGLCGFAIGYVTTLQIKITSPLTHNISG 271 (327)
Q Consensus 192 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 271 (327)
++++.+++.++++.++++++.........|...+..++... ++..+.=++..+.++.+.|.+.+..+++-++.+.+.++
T Consensus 196 ~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~-hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ 274 (327)
T KOG1581|consen 196 KKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKE-HPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIM 274 (327)
T ss_pred ccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHc-ChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHH
Confidence 99999999999999999999887776655555554444322 33334445666778999999999999999999999999
Q ss_pred cchHHHHHHHHHHHhCCccchhhhhHHHHHHhhhhhhhhccch
Q psy14376 272 TAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFVKQR 314 (327)
Q Consensus 272 ~~~~v~~~i~~~~~~~e~~~~~~~iG~~lii~g~~l~~~~~~~ 314 (327)
..|..++++++.+++|+++++.||+|..+++.|..+-.+.+++
T Consensus 275 ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~ 317 (327)
T KOG1581|consen 275 TTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK 317 (327)
T ss_pred HHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999887776555
No 18
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.91 E-value=9.8e-22 Score=174.74 Aligned_cols=268 Identities=10% Similarity=0.005 Sum_probs=177.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHhhhccCccccCCCCCCCChhhHHHHHHHHH
Q psy14376 14 TLAVSLYWLVSIITVFVNKALLSELKLDAPLFITWFQCVISAFLCIFLHIFSLFFPNILTFPTGNPFRLNTLINVLPLSI 93 (327)
Q Consensus 14 ~~~~~~~~~~s~~~~~~~k~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 93 (327)
+++..+|-..... .|...++. ++. .+.+.....+.+.++...+...+ +.+. .+++.+......+.
T Consensus 7 ~~aa~~~a~~~~~----~k~~~~~~---~~~--~~~~~~~~~~~l~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~ 71 (281)
T TIGR03340 7 VFSALMHAGWNLM----AKSHADKE---PDF--LWWALLAHSVLLTPYGLWYLAQV---GWSR---LPATFWLLLAISAV 71 (281)
T ss_pred HHHHHHHHHHHHH----HhhcCCch---hHH--HHHHHHHHHHHHHHHHHHhcccC---CCCC---cchhhHHHHHHHHH
Confidence 4445555554443 37554432 443 46666666656555444321111 1221 23343444455555
Q ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhhheeccCCcCcccchhHHHHH
Q psy14376 94 LFMSMISFNNLCLKNVGVSFYYIGRSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWLGVDQEDLAGSFSISGTVYG 173 (327)
Q Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~G~~~~ 173 (327)
....+..+.+.++++.|++.++.+.++.|+++.+++++++|||++++++.|+.+++.|+.+...++. ...+..|+.++
T Consensus 72 ~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~--~~~~~~g~~~~ 149 (281)
T TIGR03340 72 ANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRF--AQHRRKAYAWA 149 (281)
T ss_pred HHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccc--cccchhHHHHH
Confidence 5668888889999999999999999999999999999999999999999999999999998654332 22345688899
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCce-ehhhhhhHHHHHHH-HHHHHH---cCcccccccccccchhHHHHHHHHHHHHH
Q psy14376 174 VIASASLALYSIHTKKVLPCVNNEIW-LLSYYNNVYSSIIL-LFVSGL---FGELKTVQDYADLNTAYFWLFLPIGGLCG 248 (327)
Q Consensus 174 l~s~~~~a~~~v~~~~~~~~~~~~~~-~~~~~~~l~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (327)
++++++|+.|.+..|+..++. ++. ....+. ..+.... .|+... .++. .. ...+...+. .++.+.+.
T Consensus 150 l~aal~~a~~~i~~k~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~-~~~~~~~~ 220 (281)
T TIGR03340 150 LAAALGTAIYSLSDKAAALGV--PAFYSALGYL-GIGFLAMGWPFLLLYLKRHGR-SM----FPYARQILP-SATLGGLM 220 (281)
T ss_pred HHHHHHHHHhhhhccccccch--hcccccHHHH-HHHHHHHHHHHHHHHHHHhcc-ch----hhhHHHHHH-HHHHHHHH
Confidence 999999999999888764432 222 222221 1222221 222221 1111 10 111122233 33344344
Q ss_pred HHH-HHHHHHHHHhcchhhHHhhhcchHHHHHHHHHHHhCCccchhhhhHHHHHHhhhhh
Q psy14376 249 FAI-GYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAA 307 (327)
Q Consensus 249 ~~~-~~~~~~~~~~~~a~~~~~~~~~~~v~~~i~~~~~~~e~~~~~~~iG~~lii~g~~l 307 (327)
... +...++.+++.++...+...+++|+++.++|++++||+++..+++|+.+++.|+.+
T Consensus 221 s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 221 IGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 443 44456889999999999999999999999999999999999999999999999875
No 19
>KOG1580|consensus
Probab=99.90 E-value=6.8e-23 Score=167.79 Aligned_cols=260 Identities=15% Similarity=0.165 Sum_probs=218.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHhhhccCccccCCCCCCCChhhHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHH
Q psy14376 40 LDAPLFITWFQCVISAFLCIFLHIFSLFFPNILTFPTGNPFRLNTLINVLPLSILFMSMISFNNLCLKNVGVSFYYIGRS 119 (327)
Q Consensus 40 ~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~ 119 (327)
|...+.+.|+|.....+..-++..++++. + .|+..-+.+..+++.|.+.+...|.+++|+|.+++.+-++
T Consensus 50 FTfalaLVf~qC~~N~vfAkvl~~ir~~~-~---------~D~t~~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKS 119 (337)
T KOG1580|consen 50 FTFALALVFFQCTANTVFAKVLFLIRKKT-E---------IDNTPTKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKS 119 (337)
T ss_pred ehHHHHHHHHHHHHHHHHHHhheeecccc-c---------ccCCcchHHHHHHHHHHHHHHhccchhcccCCcHHHhccc
Confidence 67788999999999999887766554321 1 2332346788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccccchhhHHHHHHhhhhhheeccCC----cCcccchhHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy14376 120 LTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWLGVDQED----LAGSFSISGTVYGVIASASLALYSIHTKKVLPCVN 195 (327)
Q Consensus 120 ~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~~----~~~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~ 195 (327)
+.|+.++++++++.++++++++++|+++.+.|+++....++ .+++....|-++.++|....++....++|+...++
T Consensus 120 cKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq 199 (337)
T KOG1580|consen 120 CKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQ 199 (337)
T ss_pred CCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCCcccccchHHHHHHHHHHhcccchhHHHHHHHhhc
Confidence 99999999999999999999999999999999999766543 12233346999999999999999999999988888
Q ss_pred CCceehhhhhhHHHHHHHHHHHHHcCcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHhhhcchH
Q psy14376 196 NEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGGLCGFAIGYVTTLQIKITSPLTHNISGTAKA 275 (327)
Q Consensus 196 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 275 (327)
.+...+++++++.+.+.+.....+.||...+..+..- ++..|.=+...++++.+.+++.++.+...+|.+.+++...+.
T Consensus 200 ~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~R-hP~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRK 278 (337)
T KOG1580|consen 200 RTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQR-HPYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRK 278 (337)
T ss_pred cCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHh-ccHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHH
Confidence 8888999999999999998888888887655444332 233344456667788888999999999999999999999999
Q ss_pred HHHHHHHHHHhCCccchhhhhHHHHHHhhhhhhhh
Q psy14376 276 CAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTF 310 (327)
Q Consensus 276 v~~~i~~~~~~~e~~~~~~~iG~~lii~g~~l~~~ 310 (327)
.++++.++++|+++++..||+|.++++.|...-..
T Consensus 279 fFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~ 313 (337)
T KOG1580|consen 279 FFTILISVLLFNNPLSGRQWLGTVLVFSALTADVV 313 (337)
T ss_pred HHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhh
Confidence 99999999999999999999999999998876443
No 20
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.89 E-value=5.1e-21 Score=167.96 Aligned_cols=251 Identities=12% Similarity=0.062 Sum_probs=171.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHhhhccCcc-ccCCCCCCCCh-hhHH
Q psy14376 9 RYVKITLAVSLYWLVSIITVFVNKALLSELKLDAPLFITWFQCVISAFLCIFLHIFSLFFPNI-LTFPTGNPFRL-NTLI 86 (327)
Q Consensus 9 ~~~~~~~~~~~~~~~s~~~~~~~k~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~-~~~p~~~~~~~-~~~~ 86 (327)
.....++++.+|+...... |+ ..+ . +|..+.++|++++.+.+.++...++++++. .+.++ .++ +.+.
T Consensus 3 g~~~~i~a~~~wg~~~~~~----k~-~~~--~-~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 71 (256)
T TIGR00688 3 GIIVSLLASFLFGYMYYYS----KL-LKP--L-PATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKR---IQKRPLIL 71 (256)
T ss_pred cHHHHHHHHHHHHHHHHHH----HH-hcc--C-CHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhC---cccchHHH
Confidence 5567778888998888865 87 443 4 799999999999988876655433221100 01110 112 2233
Q ss_pred HHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhhheeccCCcCcccc
Q psy14376 87 NVLPLSILFMSMISFNNLCLKNVGVSFYYIGRSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWLGVDQEDLAGSFS 166 (327)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~~~~~~~~ 166 (327)
.....+++...+..+.+.+++++++++++++.+++|+++++++++++|||++++++.+++++++|++++..+. ++.+
T Consensus 72 ~~~~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~---~~~~ 148 (256)
T TIGR00688 72 SLLLCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLK---GSLP 148 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHc---CCch
Confidence 4556676777889999999999999999999999999999999999999999999999999999999865432 1112
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceehhhhhhHHHHHHHHHHHHHcCcccccccccccchhHHHHHHHHHHH
Q psy14376 167 ISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGGL 246 (327)
Q Consensus 167 ~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (327)
.++++++++||.|.+..||..++ +..+...+. ....+...+.....+.. .. . .......|..++..++
T Consensus 149 ----~~~l~aa~~~a~~~i~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~-~--~~~~~~~~~~l~~~g~ 216 (256)
T TIGR00688 149 ----WEALVLAFSFTAYGLIRKALKNT---DLAGFCLET-LSLMPVAIYYLLQTDFA-TV-Q--QTNPFPIWLLLVLAGL 216 (256)
T ss_pred ----HHHHHHHHHHHHHHHHHhhcCCC---CcchHHHHH-HHHHHHHHHHHHHhccC-cc-c--ccCchhHHHHHHHHHH
Confidence 35788999999999999886442 222222211 11222222211121111 10 0 1111123556666676
Q ss_pred HHHHHHHHHHHHHHhcchhhHHhhhcchHHHHHHHHHHH
Q psy14376 247 CGFAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYW 285 (327)
Q Consensus 247 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~v~~~i~~~~~ 285 (327)
++.+.++..++.+++.++...+...+++|+.++++|.+.
T Consensus 217 ~t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 217 ITGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 655555566789999999999999999999999999764
No 21
>KOG1582|consensus
Probab=99.89 E-value=7.2e-22 Score=164.96 Aligned_cols=293 Identities=11% Similarity=0.114 Sum_probs=238.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHHHHHHHHHHHHhhhccCccccCCCCCCCChhhHHH
Q psy14376 9 RYVKITLAVSLYWLVSIITVFVNKALLSELKLD-APLFITWFQCVISAFLCIFLHIFSLFFPNILTFPTGNPFRLNTLIN 87 (327)
Q Consensus 9 ~~~~~~~~~~~~~~~s~~~~~~~k~~l~~~~~~-~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 87 (327)
++...++++....+..+.--.+..++++..+|. ..+.+++.|+++-..+-++..+..+. |+...| ||.
T Consensus 40 kw~QFlic~~g~Ff~Yl~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~~~~~~--k~r~iP---------~rt 108 (367)
T KOG1582|consen 40 KWTQFLICSAGVFFLYLVYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQLIQT--KRRVIP---------WRT 108 (367)
T ss_pred hhhhHHHHHhHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHhhhheEEEeecc--cceecc---------hhH
Confidence 333344444545554555555778888888884 78999999988775555544332222 222445 788
Q ss_pred HHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhhhe-eccCCcCcccc
Q psy14376 88 VLPLSILFMSMISFNNLCLKNVGVSFYYIGRSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWLG-VDQEDLAGSFS 166 (327)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l~-~~~~~~~~~~~ 166 (327)
+..++.+..+.+.+.|-++.|++.+...+.+++..+.+++.+.++-++|+...++.+..+..+|.++. ..|...++++|
T Consensus 109 Y~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sPNF~ 188 (367)
T KOG1582|consen 109 YVILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSPNFN 188 (367)
T ss_pred hhhhHhhhhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccccCCCcc
Confidence 88999999999999999999999999999999999999999999999999999999999999999994 44445667899
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceehhhhhhHHHHHHHHHHHHHcCcccccccccccchhHHHHHHHHHHH
Q psy14376 167 ISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGGL 246 (327)
Q Consensus 167 ~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (327)
..|+...-+|.++.|.-...++|..+.++.+..++.+|+...|.+.++......||..+.+.+..-+........++-++
T Consensus 189 ~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~ 268 (367)
T KOG1582|consen 189 LIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSL 268 (367)
T ss_pred eeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHH
Confidence 99999999999999999999999999888889999999999999999999999999888776643334434444555556
Q ss_pred HHHHHHHHHHHHHHhcchhhHHhhhcchHHHHHHHHHHHhCCccchhhhhHHHHHHhhhhhhhhcc
Q psy14376 247 CGFAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFVK 312 (327)
Q Consensus 247 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~v~~~i~~~~~~~e~~~~~~~iG~~lii~g~~l~~~~~ 312 (327)
.+++...+....++..+|.+...++..+...++++|+++|..|+|.+..-|..+++.|+++..+.+
T Consensus 269 ~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 269 AGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred HhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 666665555667899999999999999999999999999999999999999999999999887765
No 22
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.88 E-value=2.8e-19 Score=159.34 Aligned_cols=278 Identities=17% Similarity=0.129 Sum_probs=192.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHhhhccCccccCCCCCCCChhhHHHH
Q psy14376 9 RYVKITLAVSLYWLVSIITVFVNKALLSELKLDAPLFITWFQCVISAFLCIFLHIFSLFFPNILTFPTGNPFRLNTLINV 88 (327)
Q Consensus 9 ~~~~~~~~~~~~~~~s~~~~~~~k~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 88 (327)
......+....|....... |...++ ..++....+.|.....+........++. . +.+ ..++.+...
T Consensus 8 ~~~~~l~~~~~~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~----~~~~~~~~~ 73 (292)
T COG0697 8 GLLALLLWGLLWGLSFIAL----KLAVES--LDPFLFAAALRFLIAALLLLPLLLLEPR-G---LRP----ALRPWLLLL 73 (292)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHhcc--cCChHHHHHHHHHHHHHHHHHHHHhhcc-c---ccc----cccchHHHH
Confidence 3334444445555555543 555543 2256666777988888874333322210 0 111 111122334
Q ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHH-HHhcccccchhhHHHHHHhhhhhheeccCCcCcccch
Q psy14376 89 LPLSILFMSMISFNNLCLKNVGVSFYYIGRSLTTVFNVLFSY-FLLAQKTSFSACVCCGIIVMGFWLGVDQEDLAGSFSI 167 (327)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~pi~~~i~~~-~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~ 167 (327)
...++.......+.+.++++++++.++++.++.|+++.+++. +++|||++++++.++.+++.|+.++..++..+...+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~~ 153 (292)
T COG0697 74 LLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSL 153 (292)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHHH
Confidence 444445568888899999999999999999999999999997 6679999999999999999999998876543211146
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceehhh-hhhHHHHHHHHHHHHHcCcccccccccccchhHHHHHHHHHHH
Q psy14376 168 SGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSY-YNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGGL 246 (327)
Q Consensus 168 ~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (327)
.|+.+++.+++++|++.+..|+.. +. ++..... ++.. ...+........+.. ...+...+..+.+.++
T Consensus 154 ~g~~~~l~a~~~~a~~~~~~~~~~-~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~ 222 (292)
T COG0697 154 LGLLLALAAALLWALYTALVKRLS-RL--GPVTLALLLQLL--LALLLLLLFFLSGFG------APILSRAWLLLLYLGV 222 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-CC--ChHHHHHHHHHH--HHHHHHHHHHhcccc------ccCCHHHHHHHHHHHH
Confidence 799999999999999999999876 32 4444444 4333 122222222211111 1112233555666676
Q ss_pred HHHH-HHHHHHHHHHhcchhhHHhhhcchHHHHHHHHHHHhCCccchhhhhHHHHHHhhhhhhhhc
Q psy14376 247 CGFA-IGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFV 311 (327)
Q Consensus 247 ~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~v~~~i~~~~~~~e~~~~~~~iG~~lii~g~~l~~~~ 311 (327)
++.. .++..++..+..++...+...+.+|+.+.+++++++||+++..+++|..+++.|+.+....
T Consensus 223 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 223 FSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 7664 4555578899999999999999999999999999999999999999999999999887654
No 23
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.85 E-value=7.3e-19 Score=145.93 Aligned_cols=262 Identities=15% Similarity=0.108 Sum_probs=207.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHhhhccCccccCCCCCCCChhhHHHHHHHHHH
Q psy14376 15 LAVSLYWLVSIITVFVNKALLSELKLDAPLFITWFQCVISAFLCIFLHIFSLFFPNILTFPTGNPFRLNTLINVLPLSIL 94 (327)
Q Consensus 15 ~~~~~~~~~s~~~~~~~k~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 94 (327)
-.+......++. |.++... .|.-.++.|..++.+++....+-.+ .++++++++.....|..
T Consensus 20 amvsiq~Gas~A-----k~LFP~v---G~~g~t~lRl~~aaLIll~l~RPwr-----------~r~~~~~~~~~~~yGvs 80 (292)
T COG5006 20 AMVSIQSGASFA-----KSLFPLV---GAAGVTALRLAIAALILLALFRPWR-----------RRLSKPQRLALLAYGVS 80 (292)
T ss_pred HHHHHHhhHHHH-----HHHcccc---ChhhHHHHHHHHHHHHHHHHhhHHH-----------hccChhhhHHHHHHHHH
Confidence 344444444443 7777654 6788999999999988887664322 12667778999999999
Q ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhhheeccCCcCcccchhHHHHHH
Q psy14376 95 FMSMISFNNLCLKNVGVSFYYIGRSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWLGVDQEDLAGSFSISGTVYGV 174 (327)
Q Consensus 95 ~~~~~~~~~~~l~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~G~~~~l 174 (327)
.+.++.++|.+++.+|.+.+..+-.+.|+.+..++- + +.++...+.+.+.|+.+...+..+..+.|+.|..+++
T Consensus 81 Lg~MNl~FY~si~riPlGiAVAiEF~GPL~vA~~~s----R--r~~d~vwvaLAvlGi~lL~p~~~~~~~lDp~Gv~~Al 154 (292)
T COG5006 81 LGGMNLLFYLSIERIPLGIAVAIEFTGPLAVALLSS----R--RLRDFVWVALAVLGIWLLLPLGQSVWSLDPVGVALAL 154 (292)
T ss_pred HHHHHHHHHHHHHhccchhhhhhhhccHHHHHHHhc----c--chhhHHHHHHHHHHHHhheeccCCcCcCCHHHHHHHH
Confidence 999999999999999999999999999999887762 2 3456677788999998866554444577889999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCceehhhhhhHHHHHHHHHHHHHcCcccccccccccchhHHHHHHHHHHHHHHHHHHH
Q psy14376 175 IASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGGLCGFAIGYV 254 (327)
Q Consensus 175 ~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (327)
.++.||+.|.+.-||.-+. .+..+.+...+..+.++.+|+....... ...++..+..-+..++++..+-|+
T Consensus 155 ~AG~~Wa~YIv~G~r~g~~--~~g~~g~a~gm~vAaviv~Pig~~~ag~-------~l~~p~ll~laLgvavlSSalPYs 225 (292)
T COG5006 155 GAGACWALYIVLGQRAGRA--EHGTAGVAVGMLVAALIVLPIGAAQAGP-------ALFSPSLLPLALGVAVLSSALPYS 225 (292)
T ss_pred HHhHHHHHHHHHcchhccc--CCCchHHHHHHHHHHHHHhhhhhhhcch-------hhcChHHHHHHHHHHHHhcccchH
Confidence 9999999999999998753 2455677788888888888887754332 233444555566778888888888
Q ss_pred H-HHHHHhcchhhHHhhhcchHHHHHHHHHHHhCCccchhhhhHHHHHHhhhhhhhh
Q psy14376 255 T-TLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTF 310 (327)
Q Consensus 255 ~-~~~~~~~~a~~~~~~~~~~~v~~~i~~~~~~~e~~~~~~~iG~~lii~g~~l~~~ 310 (327)
. ....++.++.+++.+..+||..+.+.|++++||++|+.||+|+..++.++.=...
T Consensus 226 LEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~l 282 (292)
T COG5006 226 LEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTL 282 (292)
T ss_pred HHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcccc
Confidence 6 4568899999999999999999999999999999999999999999998874444
No 24
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.81 E-value=5.9e-17 Score=138.20 Aligned_cols=288 Identities=15% Similarity=0.080 Sum_probs=203.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHhhhccCccccCCCCCCCChh
Q psy14376 4 GTLVSRYVKITLAVSLYWLVSIITVFVNKALLSELKLDAPLFITWFQCVISAFLCIFLHIFSLFFPNILTFPTGNPFRLN 83 (327)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~k~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~ 83 (327)
++..++...-+.+...|+...... |.+- +. ++..+...|.+-+...+.......|+++.-.+.- .+++
T Consensus 3 ~~~~~Gil~~l~Ay~lwG~lp~y~----kll~-~~---~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~----~~p~ 70 (293)
T COG2962 3 KDSRKGILLALLAYLLWGLLPLYF----KLLE-PL---PATEILAHRVIWSFPFMLALLFLLRQWRELKQLL----KQPK 70 (293)
T ss_pred CcccchhHHHHHHHHHHHHHHHHH----HHHc-cC---CHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH----hCcH
Confidence 445667777778888888877765 6554 33 7899999999999888887776655432211111 1223
Q ss_pred hHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhhheeccCCcCc
Q psy14376 84 TLINVLPLSILFMSMISFNNLCLKNVGVSFYYIGRSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWLGVDQEDLAG 163 (327)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~~~~~ 163 (327)
.+......+++...+...+.++..+-.+-.++.--...|++..+++.+++|||+++.|++++.++.+||..-.... +
T Consensus 71 ~~~~~~l~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~---g 147 (293)
T COG2962 71 TLLMLALTALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLL---G 147 (293)
T ss_pred HHHHHHHHHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc---C
Confidence 3444555566666888888899999888888898999999999999999999999999999999999999844322 4
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceehhhhhhHHHHHHHHHHHHHcCcccccccccccchhHHHHHHHH
Q psy14376 164 SFSISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPI 243 (327)
Q Consensus 164 ~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (327)
++++..+ .=+++|+.|... ||..+ .++.+-.....+.-.+..+......++..+.. ...+...+..++.
T Consensus 148 ~lpwval----~la~sf~~Ygl~-RK~~~---v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~---~~~~~~~~~LLv~ 216 (293)
T COG2962 148 SLPWVAL----ALALSFGLYGLL-RKKLK---VDALTGLTLETLLLLPVALIYLLFLADSGQFL---QQNANSLWLLLVL 216 (293)
T ss_pred CCcHHHH----HHHHHHHHHHHH-HHhcC---CchHHhHHHHHHHHhHHHHHHHHHHhcCchhh---hcCCchHHHHHHH
Confidence 6676544 456789999954 44444 34444444444444444444444444433311 1112233566677
Q ss_pred HHHHHHHHHHHHHHHHHhcchhhHHhhhcchHHHHHHHHHHHhCCccchhhhhHHHHHHhhhhhhhhccchhHH
Q psy14376 244 GGLCGFAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFVKQREME 317 (327)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~v~~~i~~~~~~~e~~~~~~~iG~~lii~g~~l~~~~~~~~~~ 317 (327)
.|..+.+--.......++.+-.+.++++|.+|....++|++++||+++..+.+..+.+-.|..++.....++.+
T Consensus 217 aG~vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l~~~r 290 (293)
T COG2962 217 AGLVTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGLYTAR 290 (293)
T ss_pred hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77666543222235578888889999999999999999999999999999999999999999999876554443
No 25
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.81 E-value=4.1e-17 Score=145.32 Aligned_cols=267 Identities=13% Similarity=0.095 Sum_probs=186.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHhhhccCccccCCCCCCCChhhHHHHH
Q psy14376 10 YVKITLAVSLYWLVSIITVFVNKALLSELKLDAPLFITWFQCVISAFLCIFLHIFSLFFPNILTFPTGNPFRLNTLINVL 89 (327)
Q Consensus 10 ~~~~~~~~~~~~~~s~~~~~~~k~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 89 (327)
....++++.+|+...... |+.. +.+ +..+. |..++.+++..+....+. ++ . .+++.+..-+
T Consensus 3 ~l~~lia~~~wGs~g~~~----k~~~---g~~-~~~~~--~~~~g~l~~~~~~~~~~~-~~---~-----~~~~~~~~g~ 63 (290)
T TIGR00776 3 ILIALIPALFWGSFVLIN----VKIG---GGP-YSQTL--GTTFGALILSIAIAIFVL-PE---F-----WALSIFLVGL 63 (290)
T ss_pred hHHHHHHHHHHhhhHHHH----hccC---CCH-HHHHH--HHHHHHHHHHHHHHHHhC-Cc---c-----cccHHHHHHH
Confidence 345567788888877765 6544 553 33333 677777776665554321 11 1 1233333344
Q ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHH-HHHHHHHHHHHHHhcccccchh----hHHHHHHhhhhhheeccCCcCcc
Q psy14376 90 PLSILFMSMISFNNLCLKNVGVSFYYIGRS-LTTVFNVLFSYFLLAQKTSFSA----CVCCGIIVMGFWLGVDQEDLAGS 164 (327)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~-~~pi~~~i~~~~~~~e~~s~~~----~~~~~l~~~Gv~l~~~~~~~~~~ 164 (327)
..|+.....+.++..+.++++++.+..+.+ +.|++..+++.+++|||.++++ +.++++.++|+.+....+.++.+
T Consensus 64 l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~ 143 (290)
T TIGR00776 64 LSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAG 143 (290)
T ss_pred HHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccc
Confidence 445556677788889999999999988888 8899999999999999999999 99999999999986543322111
Q ss_pred ----cc-hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceehhhhh---hHHHHHHHHHHHHHcCcccccccccccchhH
Q psy14376 165 ----FS-ISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYN---NVYSSIILLFVSGLFGELKTVQDYADLNTAY 236 (327)
Q Consensus 165 ----~~-~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (327)
.+ ..|++++++|+++|+.|.+..|+. + .++++..+.+ ...++....+.. . +.++ ..+..
T Consensus 144 ~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~-~---~~~~~~~~~~~~g~~~~~~~~~~~~--~-~~~~------~~~~~ 210 (290)
T TIGR00776 144 IKSEFNFKKGILLLLMSTIGYLVYVVVAKAF-G---VDGLSVLLPQAIGMVIGGIIFNLGH--I-LAKP------LKKYA 210 (290)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHc-C---CCcceehhHHHHHHHHHHHHHHHHH--h-cccc------hHHHH
Confidence 23 679999999999999999999875 2 4677774444 333333333221 1 1111 11222
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHH-hcchhhHHhhhcchHHHHHHHHHHHhCCccchhhh----hHHHHHHhhhhhhhh
Q psy14376 237 FWLFLPIGGLCGFAIGYVT-TLQIK-ITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWW----VSNWVVLFGSAAYTF 310 (327)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~-~~~~~-~~~a~~~~~~~~~~~v~~~i~~~~~~~e~~~~~~~----iG~~lii~g~~l~~~ 310 (327)
.+..++ .|++ +..++.. ....+ +.++...+++.+.+|+.+++.+++++||+.+..++ +|+++++.|+.+...
T Consensus 211 ~~~~~~-~Gi~-~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 211 ILLNIL-PGLM-WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHHHHH-HHHH-HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 233333 6666 4554443 35666 88899999999999999999999999999999999 999999999987543
No 26
>KOG2765|consensus
Probab=99.80 E-value=2.3e-18 Score=150.53 Aligned_cols=227 Identities=13% Similarity=0.170 Sum_probs=171.2
Q ss_pred HHHHHHHHHHH----HHHHHhcccccccchhHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhhheeccCC-
Q psy14376 86 INVLPLSILFM----SMISFNNLCLKNVGVSFYYIGRSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWLGVDQED- 160 (327)
Q Consensus 86 ~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~~- 160 (327)
++....++.+| ....+.|.||++++++..+++.+++-+|+.+++.++..||+|..+.+++.+.+.|++++..+++
T Consensus 156 ~~~ak~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~ 235 (416)
T KOG2765|consen 156 TQTAKLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSK 235 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEecccc
Confidence 35555566555 5777888999999999999999999999999999999999999999999999999999766533
Q ss_pred ----cCcccchhHHHHHHHHHHHHHHHHHHHHhhcCCCC--CCceehhhhhhHHHHHHHHHHHHHcCcccccccccccch
Q psy14376 161 ----LAGSFSISGTVYGVIASASLALYSIHTKKVLPCVN--NEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNT 234 (327)
Q Consensus 161 ----~~~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (327)
.+++....|.+++++|++.||+|.++.||...+++ .+.-....+..++..+.+.|...+. +......++.++.
T Consensus 236 ~~~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL-~~~~~e~F~lP~~ 314 (416)
T KOG2765|consen 236 QNSDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIIL-DFFGEERFELPSS 314 (416)
T ss_pred ccccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHH-HHhccCcccCCCC
Confidence 12344578999999999999999999999988774 2333344455566666666555443 1111111212222
Q ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHhcchhhHHhhhcchHHHHHHHHHHHhCCccchhhhhHHHHHHhhhhhhhhccc
Q psy14376 235 AYFWLFLPIGGLCGF-AIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFVKQ 313 (327)
Q Consensus 235 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~v~~~i~~~~~~~e~~~~~~~iG~~lii~g~~l~~~~~~ 313 (327)
.. ...++..++++. +.-|...++.-.++|++.+.-..+...++.+...++=|.++|+.+++|...|++|.+..++..+
T Consensus 315 ~q-~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~ 393 (416)
T KOG2765|consen 315 TQ-FSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSE 393 (416)
T ss_pred ce-eEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccc
Confidence 22 223344445554 4567777888999999988888888889999898888999999999999999999998887554
Q ss_pred h
Q psy14376 314 R 314 (327)
Q Consensus 314 ~ 314 (327)
.
T Consensus 394 ~ 394 (416)
T KOG2765|consen 394 N 394 (416)
T ss_pred c
Confidence 3
No 27
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.80 E-value=6.3e-18 Score=145.92 Aligned_cols=216 Identities=12% Similarity=0.191 Sum_probs=170.1
Q ss_pred ChhhHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhhheeccCC
Q psy14376 81 RLNTLINVLPLSILFMSMISFNNLCLKNVGVSFYYIGRSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWLGVDQED 160 (327)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~~ 160 (327)
++++...+..++++|...+.+.+.++++++++.++++.++..+++++++++++|+|++++||.++.+.++|+.+...+..
T Consensus 13 ~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~ 92 (244)
T PF04142_consen 13 SPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSS 92 (244)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCc
Confidence 34556678888999999999999999999999999999999999999999999999999999999999999998543322
Q ss_pred cC--------------cccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceehhhhhhHHHHHHHHHHHHHcCccccc
Q psy14376 161 LA--------------GSFSISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTV 226 (327)
Q Consensus 161 ~~--------------~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 226 (327)
.+ ......|+++.+.++++.|+..++.||.+|+.+.+.+........+|.++.++..... |....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~-~~~~~ 171 (244)
T PF04142_consen 93 QSSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLS-DGSAI 171 (244)
T ss_pred cccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcc-ccccc
Confidence 11 1123579999999999999999999999998877777888887888888877765544 22222
Q ss_pred ccc--cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHhhhcchHHHHHHHHHHHhCCccchhhhhHHHHH
Q psy14376 227 QDY--ADLNTAYFWLFLPIGGLCGFAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVV 301 (327)
Q Consensus 227 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~v~~~i~~~~~~~e~~~~~~~iG~~li 301 (327)
.+. .+..+...|..+...++.|....+ .+|+.+...-++...+..+.+.+.++.+||.+++....+|..++
T Consensus 172 ~~~g~f~G~~~~~~~~i~~~a~gGllva~----v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V 244 (244)
T PF04142_consen 172 SESGFFHGYSWWVWIVIFLQAIGGLLVAF----VLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAALV 244 (244)
T ss_pred ccCCchhhcchHHHHHHHHHHHhhHHHHH----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence 111 112233345555555555544443 47888888888888899999999999999999999999997653
No 28
>KOG2234|consensus
Probab=99.79 E-value=1.7e-16 Score=139.16 Aligned_cols=281 Identities=14% Similarity=0.198 Sum_probs=203.0
Q ss_pred HHHHHHHhcC--CCChhHHHHHHHHHHHHHHHHHHHHhhhcc--CccccCCCC-CCCChhhHHHHHHHHHHHHHHHHHhc
Q psy14376 29 FVNKALLSEL--KLDAPLFITWFQCVISAFLCIFLHIFSLFF--PNILTFPTG-NPFRLNTLINVLPLSILFMSMISFNN 103 (327)
Q Consensus 29 ~~~k~~l~~~--~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~--~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (327)
+.-||.-+.. .| .|....++-=++-.+++....+...++ +|..+..++ .-..+++..++..++++|...+.+.+
T Consensus 32 l~l~ys~~~~~~~f-~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~vPa~iYalqNnl~y 110 (345)
T KOG2234|consen 32 LLLRYSRTREKPMF-LPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVSVPALIYALQNNLQY 110 (345)
T ss_pred HHHHHHhcCCCCCc-chhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHHHHHHHHHHhhhHHH
Confidence 3456665432 25 456666666555566655555444221 111111110 11223345567778999999888999
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhhheecc---CC-----cCcccchhHHHHHHH
Q psy14376 104 LCLKNVGVSFYYIGRSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWLGVDQ---ED-----LAGSFSISGTVYGVI 175 (327)
Q Consensus 104 ~~l~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~---~~-----~~~~~~~~G~~~~l~ 175 (327)
.++.+.+++++++..++..+.++++..+++++|.+++||.++++.+.|+.+...+ +. ...+..+.|....+.
T Consensus 111 val~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~~~~~~n~~~G~~avl~ 190 (345)
T KOG2234|consen 111 VALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAKSESSAQNPFLGLVAVLV 190 (345)
T ss_pred HHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccCCCcccchhhhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999986521 11 113456789999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCceehhhhhhHHHHHHHHHHHHHcCccccc--ccccccchhHHHHHHHHHHHHHHHHHH
Q psy14376 176 ASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTV--QDYADLNTAYFWLFLPIGGLCGFAIGY 253 (327)
Q Consensus 176 s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (327)
++.+.++..++.+|++|+.+.+.|-.......+|.++.+...... |.... ..+-...+...|..++..++-|...+.
T Consensus 191 ~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~-d~~~i~~~gff~G~s~~vw~vVl~~a~gGLlvs~ 269 (345)
T KOG2234|consen 191 ACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQ-DGEAINEYGFFYGYSSIVWLVVLLNAVGGLLVSL 269 (345)
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhc-cccccccCCccccccHHHHHHHHHHhccchhHHH
Confidence 999999999999999998777777777777777887776666555 32222 112223345557766666655554443
Q ss_pred HHHHHHHhcchhhHHhhhcchHHHHHHHHHHHhCCccchhhhhHHHHHHhhhhhhhhccchh
Q psy14376 254 VTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFVKQRE 315 (327)
Q Consensus 254 ~~~~~~~~~~a~~~~~~~~~~~v~~~i~~~~~~~e~~~~~~~iG~~lii~g~~l~~~~~~~~ 315 (327)
. +|+.+-..-+....+..+++.+.++.++|.++|....+|..+++.++.+|...+.+.
T Consensus 270 v----~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~~ 327 (345)
T KOG2234|consen 270 V----MKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPARD 327 (345)
T ss_pred H----HHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCccc
Confidence 3 677777766777777889999999999999999999999999999999999655543
No 29
>KOG4510|consensus
Probab=99.78 E-value=5.2e-20 Score=153.70 Aligned_cols=254 Identities=13% Similarity=0.123 Sum_probs=192.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhccCccccCCCCCCCChhhHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHH
Q psy14376 42 APLFITWFQCVISAFLCIFLHIFSLFFPNILTFPTGNPFRLNTLINVLPLSILFMSMISFNNLCLKNVGVSFYYIGRSLT 121 (327)
Q Consensus 42 ~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~ 121 (327)
.|....-.|+++-.+..++....++ ++ .--| ....+++++-|+.........+++++|.+.+.+.++..++
T Consensus 63 ~p~e~a~~r~l~~mlit~pcliy~~-~~--v~gp------~g~R~~LiLRg~mG~tgvmlmyya~~~mslaDA~vItFss 133 (346)
T KOG4510|consen 63 DPMELASFRLLVRMLITYPCLIYYM-QP--VIGP------EGKRKWLILRGFMGFTGVMLMYYALMYMSLADAVVITFSS 133 (346)
T ss_pred ChhHhhhhhhhhehhhhheEEEEEe-ee--eecC------CCcEEEEEeehhhhhhHHHHHHHHHhhcchhheEEEEecC
Confidence 4788888887777776666443322 11 0012 1112456666777777888888999999999999999999
Q ss_pred HHHHHHHHHHHhcccccchhhHHHHHHhhhhhheeccCC-----c---C--c-ccchhHHHHHHHHHHHHHHHHHHHHhh
Q psy14376 122 TVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWLGVDQED-----L---A--G-SFSISGTVYGVIASASLALYSIHTKKV 190 (327)
Q Consensus 122 pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~~-----~---~--~-~~~~~G~~~~l~s~~~~a~~~v~~~~~ 190 (327)
|+++.++++.++|||+|+.+.++.++.+.|++++..|.. . + . +-+..|.+.++.++++-|...+..|++
T Consensus 134 Pvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~~~gt~aai~s~lf~asvyIilR~i 213 (346)
T KOG4510|consen 134 PVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYDIPGTVAAISSVLFGASVYIILRYI 213 (346)
T ss_pred hHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccccccCCchHHHHHhHhhhhhHHHHHHHh
Confidence 999999999999999999999999999999999876531 1 1 1 233458888889999888888899998
Q ss_pred cCCCCCCceehhhhhhHHHHHHHHHHHHHcCcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHhh
Q psy14376 191 LPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGGLCGFAIGYVTTLQIKITSPLTHNIS 270 (327)
Q Consensus 191 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 270 (327)
.|+. +....+.|-.+.+.+..++.....|+. .. +....-|+.++..|+.++..|....+.++.-.|...++.
T Consensus 214 Gk~~--h~~msvsyf~~i~lV~s~I~~~~ig~~----~l--P~cgkdr~l~~~lGvfgfigQIllTm~lQiErAGpvaim 285 (346)
T KOG4510|consen 214 GKNA--HAIMSVSYFSLITLVVSLIGCASIGAV----QL--PHCGKDRWLFVNLGVFGFIGQILLTMGLQIERAGPVAIM 285 (346)
T ss_pred hccc--cEEEEehHHHHHHHHHHHHHHhhccce----ec--CccccceEEEEEehhhhhHHHHHHHHHhhhhccCCeehh
Confidence 7764 455556666666777666665555432 11 122233556678888999999998888887777778999
Q ss_pred hcchHHHHHHHHHHHhCCccchhhhhHHHHHHhhhhhhhhcc
Q psy14376 271 GTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFVK 312 (327)
Q Consensus 271 ~~~~~v~~~i~~~~~~~e~~~~~~~iG~~lii~g~~l~~~~~ 312 (327)
.+..-+++.++-+++|||.+|+++|+|+++++.+.++....|
T Consensus 286 ~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~k 327 (346)
T KOG4510|consen 286 TYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKK 327 (346)
T ss_pred hHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHH
Confidence 999999999999999999999999999999988888766533
No 30
>KOG3912|consensus
Probab=99.77 E-value=1e-16 Score=134.91 Aligned_cols=291 Identities=14% Similarity=0.092 Sum_probs=205.1
Q ss_pred HHHHHHHHHHHHHHHHHHHh-----cCCCChhHHHHHHHHHHHHHHHHHHHHhhhccCccccCC------CCC--CCChh
Q psy14376 17 VSLYWLVSIITVFVNKALLS-----ELKLDAPLFITWFQCVISAFLCIFLHIFSLFFPNILTFP------TGN--PFRLN 83 (327)
Q Consensus 17 ~~~~~~~s~~~~~~~k~~l~-----~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~p------~~~--~~~~~ 83 (327)
..+...++...+++.||.-+ .-+|++|..-+..-++.-+..+..+...+++...+-... +++ |++
T Consensus 8 s~imvvsGs~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~-- 85 (372)
T KOG3912|consen 8 SLIMVVSGSFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFN-- 85 (372)
T ss_pred hhhhhhhccHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCC--
Confidence 34455566667778899865 234777775544444443344444444333221110000 001 232
Q ss_pred hHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhhheeccC----
Q psy14376 84 TLINVLPLSILFMSMISFNNLCLKNVGVSFYYIGRSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWLGVDQE---- 159 (327)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~---- 159 (327)
.+.+++++++......+.+.+|.+++++.+|+++....+|+.+++.-++|++++.++|+++....+|++++...+
T Consensus 86 -p~lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~ 164 (372)
T KOG3912|consen 86 -PVLFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLV 164 (372)
T ss_pred -cceecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccc
Confidence 345677899998899999999999999999999999999999999999999999999999999999998843221
Q ss_pred --C-cCcccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceehhhhhhHHHHHHHHHHHHHc-----Ccccccccccc
Q psy14376 160 --D-LAGSFSISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLF-----GELKTVQDYAD 231 (327)
Q Consensus 160 --~-~~~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----~~~~~~~~~~~ 231 (327)
. .+.+.-..|+++.+.+.+.-|...++.+|.+++++.+|.+...|..++|..++-...... ++..+--....
T Consensus 165 ~~p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~ 244 (372)
T KOG3912|consen 165 TDPYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGV 244 (372)
T ss_pred cCCccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcc
Confidence 1 111334579999999999999999999999999999999999999999965543332221 11111000000
Q ss_pred cchhHH---------HHHHHHHHHH-H-HHHHHHHHHHHHhcchhhHHhhhcchHHHHHHHHHHHhCCccchhhhhHHHH
Q psy14376 232 LNTAYF---------WLFLPIGGLC-G-FAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWV 300 (327)
Q Consensus 232 ~~~~~~---------~~~~~~~~~~-~-~~~~~~~~~~~~~~~a~~~~~~~~~~~v~~~i~~~~~~~e~~~~~~~iG~~l 300 (327)
+.|+.. ...+...+.. + .+.|+......|..++++..++..+|+....++++....|.+...|+.|+.+
T Consensus 245 ~eD~~~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFli 324 (372)
T KOG3912|consen 245 LEDWGDAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLI 324 (372)
T ss_pred hhhHHHHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHH
Confidence 111100 1112222222 2 2356677778899999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhh
Q psy14376 301 VLFGSAAYTF 310 (327)
Q Consensus 301 ii~g~~l~~~ 310 (327)
.+.|..+|+.
T Consensus 325 Li~Gi~lY~~ 334 (372)
T KOG3912|consen 325 LIMGIILYNQ 334 (372)
T ss_pred HHHHHHHHHH
Confidence 9999999874
No 31
>KOG1583|consensus
Probab=99.72 E-value=1.5e-17 Score=139.67 Aligned_cols=260 Identities=17% Similarity=0.209 Sum_probs=188.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHH-HhhhccCccccCCCCCCCChhhHHHHHHHHHHHHHHHHHhcccccc-cchhHHHHHHH
Q psy14376 42 APLFITWFQCVISAFLCIFLH-IFSLFFPNILTFPTGNPFRLNTLINVLPLSILFMSMISFNNLCLKN-VGVSFYYIGRS 119 (327)
Q Consensus 42 ~p~~l~~~r~~~~~~~l~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~l~~ 119 (327)
....+++.|+++-..-=++.. -+...++ +.| .|+++.....+......+|.++++ +|.+...++++
T Consensus 32 sgNLITFaqFlFia~eGlif~skf~~~k~---kip---------lk~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRs 99 (330)
T KOG1583|consen 32 SGNLITFAQFLFIATEGLIFTSKFFTVKP---KIP---------LKDYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRS 99 (330)
T ss_pred CeeehHHHHHHHHHHhceeeeccccccCC---CCc---------hhhhheehheeeeeeeeccceeeecccceEEEEEec
Confidence 557789999775544333222 1222111 333 567777777778888999999999 59999999999
Q ss_pred HHHHHHHHHHHHHhcccccchhhHHHHHHhhhhhheeccCC----c-------C-c--c-cc-hhHHHHHHHHHHHHHHH
Q psy14376 120 LTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWLGVDQED----L-------A-G--S-FS-ISGTVYGVIASASLALY 183 (327)
Q Consensus 120 ~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~~----~-------~-~--~-~~-~~G~~~~l~s~~~~a~~ 183 (327)
..++-+++.+++++|+|++.+|+.++++..+|+++.+.... . + + + .. ..|+.+...|.+..|..
T Consensus 100 gsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~m 179 (330)
T KOG1583|consen 100 GSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYM 179 (330)
T ss_pred CcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998332211 0 0 0 1 11 35888888999999999
Q ss_pred HHHHHhhcCCCCCCceehhhhhhHHHHHHHHHHHHHcCccccc----cccc-------ccchhHHHHHHHHHHHHHHHHH
Q psy14376 184 SIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTV----QDYA-------DLNTAYFWLFLPIGGLCGFAIG 252 (327)
Q Consensus 184 ~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 252 (327)
.++++..++|++.++-|.++|+-..+.+..+... +|..+- .+.+ ...-+..|..++..++..++.-
T Consensus 180 giyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~---~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~n~L~Qy~Ci 256 (330)
T KOG1583|consen 180 GIYQETTYQKYGKHWKEALFYTHFLSLPLFLFMG---DDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLFNVLTQYFCI 256 (330)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHhccchHHHhc---chHHHHHHHHhcCcceeccccCccccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998777765544321 111111 1110 0112344555554444444332
Q ss_pred HHHHHHHHhcchhhHHhhhcchHHHHHHHHHHHhCCccchhhhhHHHHHHhhhhhhhhccchhH
Q psy14376 253 YVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFVKQREM 316 (327)
Q Consensus 253 ~~~~~~~~~~~a~~~~~~~~~~~v~~~i~~~~~~~e~~~~~~~iG~~lii~g~~l~~~~~~~~~ 316 (327)
=..+.....+++.++++...+|...+.++|++.|++++++.+|+|..++..|..+|....++++
T Consensus 257 kgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~~~~~~ 320 (330)
T KOG1583|consen 257 KGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANVWNHPK 320 (330)
T ss_pred HhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 2234456788899999999999999999999999999999999999999999999886544444
No 32
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.64 E-value=2.8e-15 Score=121.07 Aligned_cols=142 Identities=27% Similarity=0.340 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCC-----CCCCceehhhhhhHHHHHHHHHHHHHcCcccccccccc-----cc-hhHH
Q psy14376 169 GTVYGVIASASLALYSIHTKKVLPC-----VNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYAD-----LN-TAYF 237 (327)
Q Consensus 169 G~~~~l~s~~~~a~~~v~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~ 237 (327)
|.++++.|.++.|++.++.|+..++ .+.++.++.+|+++.+.+.++|.+...|++........ .. +...
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 6789999999999999999999888 46799999999999999999999998865542221111 11 4456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhhHHhhhcchHHHHHHHHHHHhCCccchhhhhHHHHHHhhhhhhhh
Q psy14376 238 WLFLPIGGLCGFAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTF 310 (327)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~v~~~i~~~~~~~e~~~~~~~iG~~lii~g~~l~~~ 310 (327)
+..++..|+++++.++..+..+++++|++.++.+.++.+..++.|+++|||++|..+++|.++.+.|..+|+|
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 7778889999999999999999999999999999999999999999999999999999999999999999875
No 33
>KOG2766|consensus
Probab=99.47 E-value=2.9e-14 Score=118.79 Aligned_cols=259 Identities=14% Similarity=0.132 Sum_probs=186.1
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHhhhccCccccCCCCCCCChhhHHHHHHHHHHHHHHHHHhccccccc
Q psy14376 30 VNKALLSELKLDAPLFITWFQCVISAFLCIFLHIFSLFFPNILTFPTGNPFRLNTLINVLPLSILFMSMISFNNLCLKNV 109 (327)
Q Consensus 30 ~~k~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 109 (327)
.+.+.-. .+.|.|..=+|.....-.++-.++..++++. -.-.|++++++++...-.+.+-..+.+|+
T Consensus 36 tss~la~-k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~~~------------~~~~~~hYilla~~DVEaNy~vV~AyQyT 102 (336)
T KOG2766|consen 36 TSSELAR-KGINAPTSQTFLNYVLLALVYGPIMLFRRKY------------IKAKWRHYILLAFVDVEANYFVVKAYQYT 102 (336)
T ss_pred hhHHHHh-ccCCCccHHHHHHHHHHHHHHhhHHHhhhHH------------HHHHHHHhhheeEEeecccEEEeeehhhc
Confidence 3455443 3566788878877777666666666554421 11236667777766665666666789999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhhheeccC-----CcCcccchhHHHHHHHHHHHHHHHH
Q psy14376 110 GVSFYYIGRSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWLGVDQE-----DLAGSFSISGTVYGVIASASLALYS 184 (327)
Q Consensus 110 ~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~-----~~~~~~~~~G~~~~l~s~~~~a~~~ 184 (327)
+....+.+-+...+.+.+++|+++|.|++..++.|++++..|+++++..+ ..++++...|+.++++++.+||..+
T Consensus 103 smtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi~GATlYaVSN 182 (336)
T KOG2766|consen 103 SMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAGATLYAVSN 182 (336)
T ss_pred chHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEEecceeeeecc
Confidence 99999999999999999999999999999999999999999999854432 2334556689999999999999999
Q ss_pred HHHHhhcCCCCCCceehhhhhhHHHHHHHHHHHHHcCcccccccccccchhHHHHHHHHHHHHHHHHHHHH-HHHHHhcc
Q psy14376 185 IHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGGLCGFAIGYVT-TLQIKITS 263 (327)
Q Consensus 185 v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 263 (327)
+..+.+.++ .+..+++....++|+++..+-... |....... +| +...... +. ..+.-++-|+. -..+|..+
T Consensus 183 v~EEflvkn--~d~~elm~~lgLfGaIIsaIQ~i~--~~~~~~tl-~w-~~~i~~y-l~-f~L~MFllYsl~pil~k~~~ 254 (336)
T KOG2766|consen 183 VSEEFLVKN--ADRVELMGFLGLFGAIISAIQFIF--ERHHVSTL-HW-DSAIFLY-LR-FALTMFLLYSLAPILIKTNS 254 (336)
T ss_pred ccHHHHHhc--CcHHHHHHHHHHHHHHHHHHHHhh--hccceeeE-ee-hHHHHHH-HH-HHHHHHHHHHhhHHheecCC
Confidence 999998885 478899999999999998887433 32222221 12 1111111 11 11222233433 35678888
Q ss_pred hhhHHhhhcchHHHHHHHHHHHhCCccchhhhhHHHHHHhhhhhhhhc
Q psy14376 264 PLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFV 311 (327)
Q Consensus 264 a~~~~~~~~~~~v~~~i~~~~~~~e~~~~~~~iG~~lii~g~~l~~~~ 311 (327)
++..++.-......+.++ ..||-+.+|...+.+..+..|.++|..+
T Consensus 255 aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~r 300 (336)
T KOG2766|consen 255 ATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTR 300 (336)
T ss_pred ceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeecc
Confidence 887776666666666665 6688889999999999999999998643
No 34
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=99.32 E-value=1.9e-11 Score=104.89 Aligned_cols=191 Identities=9% Similarity=0.081 Sum_probs=128.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhhheec--------------------cCCc----Ccc
Q psy14376 109 VGVSFYYIGRSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWLGVD--------------------QEDL----AGS 164 (327)
Q Consensus 109 ~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~--------------------~~~~----~~~ 164 (327)
++++.....++..|+++++.++...+||++..++++..+...|++.... ++.. ...
T Consensus 2 isvPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g 81 (222)
T TIGR00803 2 LSVPIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFG 81 (222)
T ss_pred ccccchHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccc
Confidence 4667788899999999999999999999999999999999988874111 1110 112
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceehhhhhhHHHHHHHHHHHHHcC----ccccccccc--ccchhHHH
Q psy14376 165 FSISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFG----ELKTVQDYA--DLNTAYFW 238 (327)
Q Consensus 165 ~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~--~~~~~~~~ 238 (327)
..+.|....+.+..+.+...++.++..++.+.+ .|...+......+.....+ +........ ...+...|
T Consensus 82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (222)
T TIGR00803 82 NPVVGLSAVLSALLSSGFAGVYFEKILKDGDTM-----FWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVW 156 (222)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCc-----hHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHH
Confidence 345677778888888899999999976654322 4443333333322221111 111111111 11122223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhhHHhhhcchHHHHHHHHHHHhCCccchhhhhHHHHHHhhhhhh
Q psy14376 239 LFLPIGGLCGFAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAY 308 (327)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~v~~~i~~~~~~~e~~~~~~~iG~~lii~g~~l~ 308 (327)
..++. ....+....+.+|+.++.+.++....+++++.++++++|||+++..+++|..+++.|+.+|
T Consensus 157 ~~~~~----~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 157 IVGLL----NVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred HHHHH----HHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence 32222 2223334556789999999999999999999999999999999999999999999998764
No 35
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.30 E-value=4.2e-11 Score=89.64 Aligned_cols=135 Identities=16% Similarity=0.170 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCceehhhhhhHHHHHHHHHHHHHcCcccccccccccchhHHHHHHHHHHHHH
Q psy14376 169 GTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGGLCG 248 (327)
Q Consensus 169 G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (327)
-.+++++|++++++..++.|--+++ .||..-+.-..+...+++.......|..+.. ..-+...|..++.+|+.+
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~~--vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~----~~~~~k~~lflilSGla~ 77 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLEG--VDPDFATTIRTIVILIFLLIVLLVTGNWQAG----GEIGPKSWLFLILSGLAG 77 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc--cCccHHHHHHHHHHHHHHHHHHHhcCceecc----cccCcceehhhhHHHHHH
Confidence 3678999999999999999887774 4666666777777777777777777654322 112445577788888777
Q ss_pred HHHHHHHHHHHHhcchhhHHhhhcchHHHHHHHHHHHhCCccchhhhhHHHHHHhhhhhhh
Q psy14376 249 FAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYT 309 (327)
Q Consensus 249 ~~~~~~~~~~~~~~~a~~~~~~~~~~~v~~~i~~~~~~~e~~~~~~~iG~~lii~g~~l~~ 309 (327)
-...+..+++++...+..+..++-..+++++++|++++||++|..+|+|+.++++|.++..
T Consensus 78 glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 78 GLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 7777778899999999999999999999999999999999999999999999999998754
No 36
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.16 E-value=2.3e-10 Score=88.54 Aligned_cols=115 Identities=23% Similarity=0.342 Sum_probs=93.3
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHhhhccCccccCCCCCCCChhhHHHHHHHHHHH-HHHHHHhcccccc
Q psy14376 30 VNKALLSELKLDAPLFITWFQCVISAFLCIFLHIFSLFFPNILTFPTGNPFRLNTLINVLPLSILF-MSMISFNNLCLKN 108 (327)
Q Consensus 30 ~~k~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~ 108 (327)
.+|...++ . +|...+++|+..+.+ +.+.....++++ .+ +.+.+++......+.+. .....+.+.++++
T Consensus 9 ~~k~~~~~--~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 77 (126)
T PF00892_consen 9 FSKKLLKK--I-SPLSITFWRFLIAGI-LLILLLILGRKP----FK---NLSPRQWLWLLFLGLLGTALAYLLYFYALKY 77 (126)
T ss_pred HHHHHhcc--C-CHHHHHHHHHHHHHH-HHHHHHhhcccc----cc---CCChhhhhhhhHhhccceehHHHHHHHHHHh
Confidence 45888875 4 789999999999997 554444433321 11 24555566777777764 6889999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhhhe
Q psy14376 109 VGVSFYYIGRSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWLG 155 (327)
Q Consensus 109 ~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l~ 155 (327)
.+++..+.+.++.|+++.+++++++||+++++++.|+.+++.|+.+.
T Consensus 78 ~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~ 124 (126)
T PF00892_consen 78 ISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI 124 (126)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999874
No 37
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.12 E-value=2.4e-10 Score=87.18 Aligned_cols=106 Identities=14% Similarity=0.204 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHHhhhccCccccCCCCCCCChhhHHHHHHHHHHHH-HHHHHhcccccccchhHHHHHHHHHHHHHH
Q psy14376 48 WFQCVISAFLCIFLHIFSLFFPNILTFPTGNPFRLNTLINVLPLSILFM-SMISFNNLCLKNVGVSFYYIGRSLTTVFNV 126 (327)
Q Consensus 48 ~~r~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~l~~~~pi~~~ 126 (327)
.+|+..+.+.+..+...+++.++. .+ +.+++.+......+.+.. .+..+++.|+++.+ +...++.++.|+++.
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ 75 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDL--FR---ALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTA 75 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHH--HH---HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHH
Confidence 467888888887777664432211 11 122333555666677664 88899999999999 588899999999999
Q ss_pred HHHHHHhcccccchhhHHHHHHhhhhhheeccC
Q psy14376 127 LFSYFLLAQKTSFSACVCCGIIVMGFWLGVDQE 159 (327)
Q Consensus 127 i~~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~ 159 (327)
+++++++|||++++++.++.++++|++++..++
T Consensus 76 ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~ 108 (113)
T PF13536_consen 76 LLSWLFFKERLSPRRWLAILLILIGVILIAWSD 108 (113)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999999999966544
No 38
>KOG4314|consensus
Probab=99.11 E-value=3.4e-10 Score=91.16 Aligned_cols=219 Identities=15% Similarity=0.137 Sum_probs=154.6
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhhheeccCCcCcc
Q psy14376 85 LINVLPLSILFMSMISFNNLCLKNVGVSFYYIGRSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWLGVDQEDLAGS 164 (327)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~~~~~~ 164 (327)
+++..+.+++-.+....+..+++.++++.++.+..+.--|+.+++++.+|+|+...++++.++...|+++....++ +..
T Consensus 53 ~~~taPF~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN-~~a 131 (290)
T KOG4314|consen 53 FIRTAPFSIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADN-EHA 131 (290)
T ss_pred eeeecceEEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccc-hhh
Confidence 4455566666667777888899999999999999999999999999999999999999999999999999775443 345
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceehhhhhhHHHHHHHHHH-----HH-HcCcccccccccccchhHHH
Q psy14376 165 FSISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFV-----SG-LFGELKTVQDYADLNTAYFW 238 (327)
Q Consensus 165 ~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~ 238 (327)
.++.|+..+++|+...|+|-+.-|+...+. +--+...+++-.|..=+-.. .+ +.+ +..+++. ...-|
T Consensus 132 ~e~iGi~~AV~SA~~aAlYKV~FK~~iGnA--n~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~----VE~~qsF-A~~PW 204 (290)
T KOG4314|consen 132 DEIIGIACAVGSAFMAALYKVLFKMFIGNA--NFGDAAHFMSCLGFFNLCFISFPALILAFTG----VEHLQSF-AAAPW 204 (290)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhccC--cchhHHHHHHHHHHHHHHHHhhhHHHHHHhc----hHHHHHH-hhCCc
Confidence 688999999999999999999999988854 44455556544443321111 11 111 0000000 11126
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhhHHhhhcchHHHHHHHHHHHhCCccchhhhhHHHHHHhhhhhhhhc
Q psy14376 239 LFLPIGGLCGFAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFV 311 (327)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~v~~~i~~~~~~~e~~~~~~~iG~~lii~g~~l~~~~ 311 (327)
.++...+.+....++..+..+....|...++=+.........+..++-+-..+-....|.+++.+|..+....
T Consensus 205 G~l~G~A~L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP 277 (290)
T KOG4314|consen 205 GCLCGAAGLSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIP 277 (290)
T ss_pred hhhhhHHHHHHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheecc
Confidence 6655555566666666666677777776665544444455556665544456778889999999998876553
No 39
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.07 E-value=7e-10 Score=85.85 Aligned_cols=124 Identities=18% Similarity=0.231 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCceehhhhhhHHHHHHHHHHHHHcCcccccccccccchhHHHHHHHHHHHHH-HHHHHHHH
Q psy14376 178 ASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGGLCG-FAIGYVTT 256 (327)
Q Consensus 178 ~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 256 (327)
++||.+.+..|+..++ .++.....+....+.+ +++.....+..+ . ...+...+......+.++ ...+...+
T Consensus 1 ~~~a~~~~~~k~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKK--ISPLSITFWRFLIAGI-LLILLLILGRKP-F----KNLSPRQWLWLLFLGLLGTALAYLLYF 72 (126)
T ss_pred ceeeeHHHHHHHHhcc--CCHHHHHHHHHHHHHH-HHHHHHhhcccc-c----cCCChhhhhhhhHhhccceehHHHHHH
Confidence 4688999999998886 5789999999999998 666666653322 1 111122233344445554 34444556
Q ss_pred HHHHhcchhhHHhhhcchHHHHHHHHHHHhCCccchhhhhHHHHHHhhhhhhh
Q psy14376 257 LQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYT 309 (327)
Q Consensus 257 ~~~~~~~a~~~~~~~~~~~v~~~i~~~~~~~e~~~~~~~iG~~lii~g~~l~~ 309 (327)
+..++.++...+.+.+++|+.+.++++++++|++++.+++|+.+++.|+.+..
T Consensus 73 ~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 73 YALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999998754
No 40
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.05 E-value=2.2e-09 Score=80.50 Aligned_cols=118 Identities=15% Similarity=0.104 Sum_probs=100.5
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHhhhccCccccCCCCCCCChhhHHHHHHHHHHHHHHHHHhccccccc
Q psy14376 30 VNKALLSELKLDAPLFITWFQCVISAFLCIFLHIFSLFFPNILTFPTGNPFRLNTLINVLPLSILFMSMISFNNLCLKNV 109 (327)
Q Consensus 30 ~~k~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 109 (327)
..|..+++ . .|.+-++.|.++....+..+...+++. +.+ .+.+.|.+..+...|+.......+++.+++--
T Consensus 21 F~KIGl~~--v-dp~~At~IRtiVi~~~l~~v~~~~g~~----~~~--~~~~~k~~lflilSGla~glswl~Yf~ALk~G 91 (140)
T COG2510 21 FAKIGLEG--V-DPDFATTIRTIVILIFLLIVLLVTGNW----QAG--GEIGPKSWLFLILSGLAGGLSWLLYFRALKKG 91 (140)
T ss_pred HHHHhccc--c-CccHHHHHHHHHHHHHHHHHHHhcCce----ecc--cccCcceehhhhHHHHHHHHHHHHHHHHHhcC
Confidence 45999885 4 588899999999999888888766543 222 23667778878788877788999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhhhee
Q psy14376 110 GVSFYYIGRSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWLGV 156 (327)
Q Consensus 110 ~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l~~ 156 (327)
++|...-+-.++|+++.+++++++|||++.++|+|+++..+|++++.
T Consensus 92 ~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 92 KASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred CcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 99999999999999999999999999999999999999999998754
No 41
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.84 E-value=1.7e-07 Score=82.28 Aligned_cols=133 Identities=15% Similarity=0.035 Sum_probs=98.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHhhhccCccccCCCCCCCChhhHH
Q psy14376 7 VSRYVKITLAVSLYWLVSIITVFVNKALLSELKLDAPLFITWFQCVISAFLCIFLHIFSLFFPNILTFPTGNPFRLNTLI 86 (327)
Q Consensus 7 ~~~~~~~~~~~~~~~~~s~~~~~~~k~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 86 (327)
........+++.+|...+.. .|...++.+. .+......|+.++.+.+.+.....++ .+. .+.+++.
T Consensus 127 ~~G~~~~l~a~~~~a~~~~~----~k~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~---~~~~~~~ 192 (260)
T TIGR00950 127 PAGLLLGLGSGISFALGTVL----YKRLVKKEGP-ELLQFTGWVLLLGALLLLPFAWFLGP------NPQ---ALSLQWG 192 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HhHHhhcCCc-hHHHHHHHHHHHHHHHHHHHHHhcCC------CCC---cchHHHH
Confidence 34555566677777776664 4777765432 24455557888888877766554321 111 3444555
Q ss_pred HHHHHHHHH-HHHHHHhcccccccchhHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhh
Q psy14376 87 NVLPLSILF-MSMISFNNLCLKNVGVSFYYIGRSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFW 153 (327)
Q Consensus 87 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~ 153 (327)
.....+++. .....+++.++++.+++.++++.++.|++.++++++++||+++..++.|..+.+.|+.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~ 260 (260)
T TIGR00950 193 ALLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL 260 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 556566654 5788889999999999999999999999999999999999999999999999999863
No 42
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.82 E-value=1.2e-07 Score=84.37 Aligned_cols=133 Identities=12% Similarity=0.060 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCceehhhhhhHHHHHHHHHHHHHcCcccccccccccchhHHHHHHHHHHHHHH
Q psy14376 170 TVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGGLCGF 249 (327)
Q Consensus 170 ~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (327)
.++.+++++++|...+.+|+..+++ ++ ...+....+.+.++|+......... +. ..+...+..++..+....
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~--~~--~~~~~~~~~~~~l~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~ 74 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKE--PD--FLWWALLAHSVLLTPYGLWYLAQVG-WS---RLPATFWLLLAISAVANM 74 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCch--hH--HHHHHHHHHHHHHHHHHHHhcccCC-CC---CcchhhHHHHHHHHHHHH
Confidence 5688999999999999999887753 23 3455556666677776654311111 11 111222444455555555
Q ss_pred HHHHHHHHHHHhcchhhHHhhhcchHHHHHHHHHHHhCCccchhhhhHHHHHHhhhhhhhh
Q psy14376 250 AIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTF 310 (327)
Q Consensus 250 ~~~~~~~~~~~~~~a~~~~~~~~~~~v~~~i~~~~~~~e~~~~~~~iG~~lii~g~~l~~~ 310 (327)
...+..++..++.++...+.+.+..|+++.+++++++||+++..+++|..+++.|+.+...
T Consensus 75 ~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~ 135 (281)
T TIGR03340 75 VYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL 135 (281)
T ss_pred HHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 5566667788999999999999999999999999999999999999999999999987654
No 43
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.79 E-value=6.8e-07 Score=79.74 Aligned_cols=216 Identities=15% Similarity=0.108 Sum_probs=119.3
Q ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhhhee-ccCCcCcccch------
Q psy14376 95 FMSMISFNNLCLKNVGVSFYYIGRSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWLGV-DQEDLAGSFSI------ 167 (327)
Q Consensus 95 ~~~~~~~~~~~l~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l~~-~~~~~~~~~~~------ 167 (327)
+..+...+..++.+.|++..+-+.+...++.++++..++|||++++++.|+.+++.|..++. ..+..++..+.
T Consensus 60 ~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~~~t~~~l~~~ 139 (300)
T PF05653_consen 60 MVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEPIHTLDELIAL 139 (300)
T ss_pred HhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCCcCCHHHHHHH
Confidence 45666788889999999999999999999999999999999999999999999999998732 22211111110
Q ss_pred ---hH-HHHHHH-HHHHHHHHHHHHHhhcCCCCCCceehhhhhhHHHHHHHHHHHHHcCcccc-cccccccchhHHHHHH
Q psy14376 168 ---SG-TVYGVI-ASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKT-VQDYADLNTAYFWLFL 241 (327)
Q Consensus 168 ---~G-~~~~l~-s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 241 (327)
.+ +.+... ..+...+.....+|..++ +..--.....+.|+...+..=........ ....+...++..|..+
T Consensus 140 ~~~~~fl~y~~~~~~~~~~L~~~~~~r~g~~---~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g~~~f~~~~~y~l~ 216 (300)
T PF05653_consen 140 LSQPGFLVYFILVLVLILILIFFIKPRYGRR---NILVYISICSLIGSFTVLSAKAISILIKLTFSGDNQFTYPLTYLLL 216 (300)
T ss_pred hcCcceehhHHHHHHHHHHHHHhhcchhccc---ceEEEEEEeccccchhhhHHHHHHHHHHHHhcCchhhhhhHHHHHH
Confidence 01 111111 111122222122221111 11111111112222111110000000000 0000122344455554
Q ss_pred HHHHHHHHHHHHHHHHHHHhcchhhHHhhh-cchHHHHHHHHHHHhCCc--cchh----hhhHHHHHHhhhhhhhhccc
Q psy14376 242 PIGGLCGFAIGYVTTLQIKITSPLTHNISG-TAKACAQTVIASYWYNEV--KPFL----WWVSNWVVLFGSAAYTFVKQ 313 (327)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~v~~~i~~~~~~~e~--~~~~----~~iG~~lii~g~~l~~~~~~ 313 (327)
+....+...--+..+++.++.+++....+. ..-...+++-|.++|+|- .+.. ...|+.+++.|+.+....|+
T Consensus 217 ~~~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~~~ 295 (300)
T PF05653_consen 217 LVLVVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSSKD 295 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeeccCc
Confidence 444444444455678899988887544433 344566777788899985 3443 44688889999988765443
No 44
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.79 E-value=1.2e-07 Score=83.05 Aligned_cols=139 Identities=12% Similarity=0.072 Sum_probs=103.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceehhhhhhHHHHHHHHHHHHHcCcccccc-cccccchhHHHHHHHHHHH
Q psy14376 168 SGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQ-DYADLNTAYFWLFLPIGGL 246 (327)
Q Consensus 168 ~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 246 (327)
.|.++.++++++|+...+..|. .. +.++.++.++.++++.+.+++.....++..... +.........+......|+
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~--~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 78 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LK--PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGL 78 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hc--cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHH
Confidence 4889999999999999999997 44 368999999999999988777665543221110 0011111112333445555
Q ss_pred HHHHHHHHHHHHHHhcchhhHHhhhcchHHHHHHHHHHHhCCccchhhhhHHHHHHhhhhhhh
Q psy14376 247 CGFAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYT 309 (327)
Q Consensus 247 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~v~~~i~~~~~~~e~~~~~~~iG~~lii~g~~l~~ 309 (327)
+....+...+...+++++...+.+.+..|+++.+++.++++|+++..+++|..+.+.|+.+..
T Consensus 79 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~ 141 (256)
T TIGR00688 79 LIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI 141 (256)
T ss_pred HHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 444445555677899999999999999999999999999999999999999999999988654
No 45
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.79 E-value=1.6e-07 Score=84.22 Aligned_cols=140 Identities=8% Similarity=0.023 Sum_probs=104.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceehhhhhhHHHHHHHHHHHHHcCcccccccccccchhHHHHHHHHH
Q psy14376 165 FSISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIG 244 (327)
Q Consensus 165 ~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (327)
....|.++.++++++|+...+..|.. . +.++.++..+...++.+.+++.....++..+... ...+...+......
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~--~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 79 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKLI-Y--YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKT--LIQTPQKIFMLAVS 79 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh-c--CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHH--HHcCHHHHHHHHHH
Confidence 34579999999999999999999764 4 3689999999999999888776655432211110 01122222222233
Q ss_pred HHHHHHHHHHHHHHHHhcchhhHHhhhcchHHHHHHHHHHHhCCccchhhhhHHHHHHhhhhhhh
Q psy14376 245 GLCGFAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYT 309 (327)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~v~~~i~~~~~~~e~~~~~~~iG~~lii~g~~l~~ 309 (327)
++.....+...++.+++.++...+++.+..|++..+++.++++|+++..+++|.++.+.|+.+..
T Consensus 80 ~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 80 AVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 33333334455788999999999999999999999999999999999999999999999998754
No 46
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.74 E-value=3.6e-06 Score=72.95 Aligned_cols=212 Identities=14% Similarity=0.059 Sum_probs=138.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhcccccccchhHHHHH-HHHHHHHHHHHHHHHhcccccchhh----HHHHHHhhhhhheec
Q psy14376 83 NTLINVLPLSILFMSMISFNNLCLKNVGVSFYYIG-RSLTTVFNVLFSYFLLAQKTSFSAC----VCCGIIVMGFWLGVD 157 (327)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l-~~~~pi~~~i~~~~~~~e~~s~~~~----~~~~l~~~Gv~l~~~ 157 (327)
+.+..-+..|++-...+..++.+.++..+|.+-=+ ...+-+.+.+.++++++|--+..++ .++++.++|+.+...
T Consensus 43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~ 122 (269)
T PF06800_consen 43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY 122 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence 55555666777777888889899998888766544 4677888999999999998777665 477888889988655
Q ss_pred cCCcCc-----ccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceehhhhhhHHHHHHHHHHHHHcCccccccccccc
Q psy14376 158 QEDLAG-----SFSISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADL 232 (327)
Q Consensus 158 ~~~~~~-----~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (327)
.+..++ +....|+...+.+.+.|..|.+..|-. +.++++..+=+.+--.+....+.... .++..+.
T Consensus 123 ~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~----~~~~~~~~lPqaiGm~i~a~i~~~~~--~~~~~~k--- 193 (269)
T PF06800_consen 123 QDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKAF----HVSGWSAFLPQAIGMLIGAFIFNLFS--KKPFFEK--- 193 (269)
T ss_pred ccccccccccccchhhHHHHHHHHHHHHHHHHHHHHhc----CCChhHhHHHHHHHHHHHHHHHhhcc--ccccccc---
Confidence 443222 233469999999999999999887652 34676666655443333233333322 1111111
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHhhhcchHHHHHHHHHHHhCCccchh----hhhHHHHHHhhhhh
Q psy14376 233 NTAYFWLFLPIGGLCGFAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFL----WWVSNWVVLFGSAA 307 (327)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~v~~~i~~~~~~~e~~~~~----~~iG~~lii~g~~l 307 (327)
..|.- +..|++=...+.......+..+..+.-.+..+..+.+++.|++++||+-+.. .++|.++++.|.++
T Consensus 194 ---~~~~n-il~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 194 ---KSWKN-ILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred ---chHHh-hHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 11221 1222221222333334455556555555677889999999999999998865 44688888887754
No 47
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.58 E-value=1.6e-06 Score=79.51 Aligned_cols=138 Identities=12% Similarity=0.075 Sum_probs=108.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceehhhhhhHHHHHHHHHHHHHcCcccccccccccchhHHHHHHHHHHHH
Q psy14376 168 SGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGGLC 247 (327)
Q Consensus 168 ~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (327)
.-...++...++|+.+.++.|..++. +.++.....+...+++++++|++...+..... ...+...|..+...|++
T Consensus 13 ~~~~~~~~~q~~~~~~~~~~k~a~~~-G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~----~~~~~~~~~~l~l~g~~ 87 (358)
T PLN00411 13 VFLTAMLATETSVVGISTLFKVATSK-GLNIYPFLGYSYLLASLLLLPSLFFTNRSRSL----PPLSVSILSKIGLLGFL 87 (358)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHC-CCCccHHHHHHHHHHHHHHHHHHHHHHHhccc----CcchHHHHHHHHHHHHH
Confidence 34677888999999999999998865 78999999999999999999887764221111 11122234555566666
Q ss_pred HHHHHHHHHHHHHhcchhhHHhhhcchHHHHHHHHHHH------hCCccchhhhhHHHHHHhhhhhhhh
Q psy14376 248 GFAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYW------YNEVKPFLWWVSNWVVLFGSAAYTF 310 (327)
Q Consensus 248 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~v~~~i~~~~~------~~e~~~~~~~iG~~lii~g~~l~~~ 310 (327)
++..+...+...++++|...+++.++.|+++.++++++ ++|+++..+++|.++.+.|+.+...
T Consensus 88 g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~ 156 (358)
T PLN00411 88 GSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIF 156 (358)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 64334455678899999999999999999999999999 6999999999999999999987553
No 48
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.45 E-value=3.3e-06 Score=63.83 Aligned_cols=64 Identities=22% Similarity=0.098 Sum_probs=59.2
Q ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhhhee
Q psy14376 93 ILFMSMISFNNLCLKNVGVSFYYIGRSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWLGV 156 (327)
Q Consensus 93 ~~~~~~~~~~~~~l~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l~~ 156 (327)
.++.....++..+++..|.+.+..+.++.|+++.+.+++++|||+++++++|+.+.++|++++.
T Consensus 45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3456788899999999999999999999999999999999999999999999999999998754
No 49
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.37 E-value=1.6e-05 Score=71.17 Aligned_cols=130 Identities=12% Similarity=0.065 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHhhhccCccccCCCCCCCChhhHHHHHH
Q psy14376 11 VKITLAVSLYWLVSIITVFVNKALLSELKLDAPLFITWFQCVISAFLCIFLHIFSLFFPNILTFPTGNPFRLNTLINVLP 90 (327)
Q Consensus 11 ~~~~~~~~~~~~~s~~~~~~~k~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 90 (327)
...+.+..+|...+.. .|...+++ +|..... ...++.+.+.+....... .. +.+.+.+...+.
T Consensus 151 ll~l~aa~~~a~~~v~----~r~~~~~~---~~~~~~~-~~~~~~~~l~~~~~~~~~-----~~----~~~~~~~~~~l~ 213 (293)
T PRK10532 151 ALALGAGACWAIYILS----GQRAGAEH---GPATVAI-GSLIAALIFVPIGALQAG-----EA----LWHWSILPLGLA 213 (293)
T ss_pred HHHHHHHHHHHHHHHH----HHHHhccC---CchHHHH-HHHHHHHHHHHHHHHccC-----cc----cCCHHHHHHHHH
Confidence 3444455555554443 36654433 4555544 445555555444432210 01 133443433445
Q ss_pred HHHHH-HHHHHHhcccccccchhHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhhheec
Q psy14376 91 LSILF-MSMISFNNLCLKNVGVSFYYIGRSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWLGVD 157 (327)
Q Consensus 91 ~~~~~-~~~~~~~~~~l~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~ 157 (327)
.+++. .....+++.++++.+++.++.+..+.|++..++++++++|+++..+++|..+.++|++....
T Consensus 214 lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~ 281 (293)
T PRK10532 214 VAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTL 281 (293)
T ss_pred HHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 55554 46777889999999999999999999999999999999999999999999999999988543
No 50
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.36 E-value=1.7e-05 Score=70.98 Aligned_cols=134 Identities=16% Similarity=0.072 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHhhhccCccccCCCCCCCChhhHHHH
Q psy14376 9 RYVKITLAVSLYWLVSIITVFVNKALLSELKLDAPLFITWFQCVISAFLCIFLHIFSLFFPNILTFPTGNPFRLNTLINV 88 (327)
Q Consensus 9 ~~~~~~~~~~~~~~~s~~~~~~~k~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 88 (327)
.....+++..+|...+.. +|..-. +++...+.+++..+...+.+....... ..+ ...+.+.+...
T Consensus 151 G~l~~l~a~~~~a~~~~~----~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~~~~~i 215 (292)
T PRK11272 151 GAILILIASASWAFGSVW----SSRLPL----PVGMMAGAAEMLAAGVVLLIASLLSGE-----RLT--ALPTLSGFLAL 215 (292)
T ss_pred HHHHHHHHHHHHHHHHHH----HHhcCC----CcchHHHHHHHHHHHHHHHHHHHHcCC-----ccc--ccCCHHHHHHH
Confidence 334445555555555543 344321 134556788888887777665543211 011 01234556566
Q ss_pred HHHHHHH-HHHHHHhcccccccchhHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhhheec
Q psy14376 89 LPLSILF-MSMISFNNLCLKNVGVSFYYIGRSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWLGVD 157 (327)
Q Consensus 89 ~~~~~~~-~~~~~~~~~~l~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~ 157 (327)
...++.. .....+++.++++.+++.++++..+.|++.++++++++||+++..++.|..+.+.|+.+...
T Consensus 216 ~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~ 285 (292)
T PRK11272 216 GYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTL 285 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 6666653 46778899999999999999999999999999999999999999999999999999988544
No 51
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.28 E-value=3.3e-05 Score=61.96 Aligned_cols=124 Identities=17% Similarity=0.175 Sum_probs=90.1
Q ss_pred HHHHHHhc-----CCCChhHHHHHHHHHHHHHHHHHHHHhhhccCccccCCC--CCCC--ChhhHHHHHHHHHHHHHHHH
Q psy14376 30 VNKALLSE-----LKLDAPLFITWFQCVISAFLCIFLHIFSLFFPNILTFPT--GNPF--RLNTLINVLPLSILFMSMIS 100 (327)
Q Consensus 30 ~~k~~l~~-----~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~p~--~~~~--~~~~~~~~~~~~~~~~~~~~ 100 (327)
+.|..+++ .+. .|..+.+.....+.+++.+........+....... +.+. +.+.+..+...+++....+.
T Consensus 18 ~~~~~~~~~~~~~~~~-~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 96 (153)
T PF03151_consen 18 LIKKLLKKVSSNSKKL-NPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFIFLLILSGLLAFLYNL 96 (153)
T ss_pred HHHHHHhcccccccCC-CHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHH
Confidence 45666665 466 57888888888888777776654432110000000 0001 22334445556666668888
Q ss_pred HhcccccccchhHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhhh
Q psy14376 101 FNNLCLKNVGVSFYYIGRSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWL 154 (327)
Q Consensus 101 ~~~~~l~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l 154 (327)
..+..++++++-+.+++.....+.+.++++++++|+++.+++.|+++.+.|+.+
T Consensus 97 ~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 97 SSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence 888999999999999999999999999999999999999999999999999876
No 52
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.25 E-value=3.4e-05 Score=69.08 Aligned_cols=78 Identities=18% Similarity=0.162 Sum_probs=66.7
Q ss_pred CChhhHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhhheec
Q psy14376 80 FRLNTLINVLPLSILFMSMISFNNLCLKNVGVSFYYIGRSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWLGVD 157 (327)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~ 157 (327)
.+.+.+-.....++.......+++.++++.+++..+.+.++.|++..++++++++|+++..+++|.++.+.|+.+...
T Consensus 210 ~~~~~~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 210 FSLPAIIKLLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL 287 (295)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence 445555555555554557888999999999999999999999999999999999999999999999999999987543
No 53
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.17 E-value=7.9e-05 Score=66.88 Aligned_cols=144 Identities=11% Similarity=0.064 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHhhhccCccccCCCCCCCChhhHHHH
Q psy14376 9 RYVKITLAVSLYWLVSIITVFVNKALLSELKLDAPLFITWFQCVISAFLCIFLHIFSLFFPNILTFPTGNPFRLNTLINV 88 (327)
Q Consensus 9 ~~~~~~~~~~~~~~~s~~~~~~~k~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 88 (327)
.....+++...|...++.. |...++.+-+...........++.+........... +.....+ ..+.+.+.+...
T Consensus 144 G~~l~l~aal~~a~~~v~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~l 217 (299)
T PRK11453 144 GFMLTLAAAFSWACGNIFN----KKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDG-SATMIHS-LVTIDMTTILSL 217 (299)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcC-chhhhhh-hccCCHHHHHHH
Confidence 3344555666666655543 554332211122344455555554433332222111 1000000 012445556666
Q ss_pred HHHHHHH-HHHHHHhcccccccchhHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhhheecc
Q psy14376 89 LPLSILF-MSMISFNNLCLKNVGVSFYYIGRSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWLGVDQ 158 (327)
Q Consensus 89 ~~~~~~~-~~~~~~~~~~l~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~ 158 (327)
+..+++. .....+++.++++.+++.++.+..+.|++..++++++++|+++..+++|..+.++|+.+...+
T Consensus 218 ~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~ 288 (299)
T PRK11453 218 MYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFG 288 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcc
Confidence 6666554 367778889999999999999999999999999999999999999999999999999885443
No 54
>PRK13499 rhamnose-proton symporter; Provisional
Probab=98.14 E-value=0.0024 Score=57.83 Aligned_cols=229 Identities=11% Similarity=0.013 Sum_probs=127.7
Q ss_pred ChhhHHHHHHHHHHHHHHHHHhcccccccchhHHHHH-HHHHHHHHHHHHHHHhcccc---cch----hhHHHHHHhhhh
Q psy14376 81 RLNTLINVLPLSILFMSMISFNNLCLKNVGVSFYYIG-RSLTTVFNVLFSYFLLAQKT---SFS----ACVCCGIIVMGF 152 (327)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l-~~~~pi~~~i~~~~~~~e~~---s~~----~~~~~~l~~~Gv 152 (327)
+.+.+..-+..|++-...+..+..+.++..+|...-+ ..++-+...+...++++|=. +.. -..++++.++|+
T Consensus 69 ~~~~~~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi 148 (345)
T PRK13499 69 SGSTLLPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGV 148 (345)
T ss_pred CHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHH
Confidence 3444555556666666778888889999988877644 67788888888888887532 333 357888888999
Q ss_pred hheec----cCCc-----Cc-ccchhHHHHHHHHHHHHHHHH-------HHHHhhcCCCCCCceehhhhhhH---HHHHH
Q psy14376 153 WLGVD----QEDL-----AG-SFSISGTVYGVIASASLALYS-------IHTKKVLPCVNNEIWLLSYYNNV---YSSII 212 (327)
Q Consensus 153 ~l~~~----~~~~-----~~-~~~~~G~~~~l~s~~~~a~~~-------v~~~~~~~~~~~~~~~~~~~~~l---~~~~~ 212 (327)
++... .+.. +. .....|+.++++|.+.+++|. ...+.. .+.+.++.....-+.. .+...
T Consensus 149 ~l~s~Ag~~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a-~~~g~~~~~~~lp~~~~~~~G~~~ 227 (345)
T PRK13499 149 AIVGRAGQLKERKMGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAA-AALGVDPLYAALPSYVVIMGGGAI 227 (345)
T ss_pred HHHHHhhhhcccccccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhh-hhcCCCchHHHHHHHHHHHHHHHH
Confidence 88444 2221 11 223579999999999999999 433322 1123344443333332 33332
Q ss_pred H-HHHHHH---cCcccc-cccccccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHhcc----hhhHHhhhcchHHHHHHH
Q psy14376 213 L-LFVSGL---FGELKT-VQDYADLN--TAYFWLFLPIGGLCGFAIGYVTTLQIKITS----PLTHNISGTAKACAQTVI 281 (327)
Q Consensus 213 ~-~~~~~~---~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----a~~~~~~~~~~~v~~~i~ 281 (327)
. +.++.. .++..+ ..+..... -........+.|++=+.-+++.....++.+ .....+.+.+.-+.+.+.
T Consensus 228 ~n~~~~~~~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~Viistlw 307 (345)
T PRK13499 228 TNLGFCFIRLAKNKDLSLKADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLW 307 (345)
T ss_pred HHHHHHHHHHhhCCCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHh
Confidence 2 222221 111110 11111100 011122223333222222222222233331 112335446666888999
Q ss_pred HHHHhCCccc------hhhhhHHHHHHhhhhhhhhc
Q psy14376 282 ASYWYNEVKP------FLWWVSNWVVLFGSAAYTFV 311 (327)
Q Consensus 282 ~~~~~~e~~~------~~~~iG~~lii~g~~l~~~~ 311 (327)
|+ +++|.-+ ...++|.+++++|..+..+.
T Consensus 308 Gi-~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 308 GL-VLKEWKGASRRPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred hh-hhhhccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 98 5999877 56678999999999876543
No 55
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.12 E-value=0.00011 Score=67.45 Aligned_cols=139 Identities=12% Similarity=0.161 Sum_probs=99.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcCCCCCC-ceehhhhhhHHHHHHHHHHHHHcCcccccccccccchhHHHHHHHHH
Q psy14376 166 SISGTVYGVIASASLALYSIHTKKVLPCVNNE-IWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIG 244 (327)
Q Consensus 166 ~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (327)
++.-..+++.--.+...+++..|...++. + |+.++.++++.+.+...++... + ..+..+... ....+..++..
T Consensus 47 ~~~~~~~~~~wy~~s~~~~~~nK~vl~~~--~~P~~l~~~~~~~~~l~~~~~~~~-~-~~~~~~~~~--~~~~~~~llp~ 120 (350)
T PTZ00343 47 KWKLALLFLTWYALNVLYVVDNKLALNML--PLPWTISSLQLFVGWLFALLYWAT-G-FRKIPRIKS--LKLFLKNFLPQ 120 (350)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhC--ChhHHHHHHHHHHHHHHHHHHHHh-C-CCCCCCCCC--HHHHHHHHHHH
Confidence 33344445544445566677888888754 5 9999999999998766555432 1 111111110 11234555666
Q ss_pred HHHHHHHHHHHHHHHHhcchhhHHhhhcchHHHHHHHHHHHhCCccchhhhhHHHHHHhhhhhhhh
Q psy14376 245 GLCGFAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTF 310 (327)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~v~~~i~~~~~~~e~~~~~~~iG~~lii~g~~l~~~ 310 (327)
|++....+...+..++.++++..+++..++|+++++++.++++|+++..+++|.++++.|+.+...
T Consensus 121 gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~ 186 (350)
T PTZ00343 121 GLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASV 186 (350)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheec
Confidence 777766655566788999999999999999999999999999999999999999999999987654
No 56
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.11 E-value=3.9e-05 Score=58.35 Aligned_cols=105 Identities=15% Similarity=0.316 Sum_probs=69.4
Q ss_pred hhhHHHHHHHHHHHHHcCcccccccccccchhHHHHHHHHHHHHHHHH-HHHHHHHHHhcchhhHHhhhcchHHHHHHHH
Q psy14376 204 YNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGGLCGFAI-GYVTTLQIKITSPLTHNISGTAKACAQTVIA 282 (327)
Q Consensus 204 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~v~~~i~~ 282 (327)
+...++.+.+.......++..+........+ +...+..|+++... +.......++.++ ..+.+..+.|+++.++|
T Consensus 3 ~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~ 78 (113)
T PF13536_consen 3 FRYLFSVLFLLIILLIRGRLRDLFRALRRKP---WLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLS 78 (113)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHH
Confidence 3445566666665555444333221111111 22234444454423 3334566777775 67788899999999999
Q ss_pred HHHhCCccchhhhhHHHHHHhhhhhhhhcc
Q psy14376 283 SYWYNEVKPFLWWVSNWVVLFGSAAYTFVK 312 (327)
Q Consensus 283 ~~~~~e~~~~~~~iG~~lii~g~~l~~~~~ 312 (327)
.++++|+++..+++|..++.+|+.+..+.+
T Consensus 79 ~~~~~er~~~~~~~a~~l~~~Gv~li~~~~ 108 (113)
T PF13536_consen 79 WLFFKERLSPRRWLAILLILIGVILIAWSD 108 (113)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999999877643
No 57
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.08 E-value=5.1e-05 Score=65.69 Aligned_cols=139 Identities=13% Similarity=0.088 Sum_probs=105.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceehhhhhhHHHHHHHHHHHHHcCcccccccccccchhHHHHHHHHHH
Q psy14376 166 SISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGG 245 (327)
Q Consensus 166 ~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (327)
+..|+++++.|-+.|+....+.|-+ ++ .++.++..+..+.+.+.++.........++..+ ...++..+..+..++
T Consensus 5 ~~~Gil~~l~Ay~lwG~lp~y~kll-~~--~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~--~~~~p~~~~~~~l~a 79 (293)
T COG2962 5 SRKGILLALLAYLLWGLLPLYFKLL-EP--LPATEILAHRVIWSFPFMLALLFLLRQWRELKQ--LLKQPKTLLMLALTA 79 (293)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHH-cc--CCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH--HHhCcHHHHHHHHHH
Confidence 3469999999999999999888765 42 478899999999999988877777655554443 223444455555544
Q ss_pred HHHHHHHHHH-HHHHHhcchhhHHhhhcchHHHHHHHHHHHhCCccchhhhhHHHHHHhhhhhhhh
Q psy14376 246 LCGFAIGYVT-TLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTF 310 (327)
Q Consensus 246 ~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~v~~~i~~~~~~~e~~~~~~~iG~~lii~g~~l~~~ 310 (327)
..-.. |+.. .|+..+......+.=-+..|++.++.|.++++|+++..|++...+..+|+....+
T Consensus 80 ~li~~-nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~ 144 (293)
T COG2962 80 LLIGL-NWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTW 144 (293)
T ss_pred HHHHH-HHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence 43332 4443 4667777777778777899999999999999999999999999999999976543
No 58
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.03 E-value=0.00023 Score=55.24 Aligned_cols=118 Identities=12% Similarity=0.099 Sum_probs=77.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceehhhhhhHHHHHHHHHHHHHcCcccccccccccchhHHHHHHHHHHHH
Q psy14376 168 SGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGGLC 247 (327)
Q Consensus 168 ~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (327)
.|.++.+.+.++.+...++.|+-.++.+. .+.... .. ..... .. ++ + ..++.|+.
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~--~~~~~~-----~~-~~~~~-~~-------------~p--~-~~i~lgl~ 56 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPL--LSHAWD-----FI-AALLA-FG-------------LA--L-RAVLLGLA 56 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCC--ccchhH-----HH-HHHHH-Hh-------------cc--H-HHHHHHHH
Confidence 37788999999999999999987775432 111110 00 00000 00 01 0 01344455
Q ss_pred HHHHHHHH-HHHHHhcchhhHHhhhcchHHHHHHHHHH--HhCCccchhhhhHHHHHHhhhhhhhh
Q psy14376 248 GFAIGYVT-TLQIKITSPLTHNISGTAKACAQTVIASY--WYNEVKPFLWWVSNWVVLFGSAAYTF 310 (327)
Q Consensus 248 ~~~~~~~~-~~~~~~~~a~~~~~~~~~~~v~~~i~~~~--~~~e~~~~~~~iG~~lii~g~~l~~~ 310 (327)
++...+.. ....++.+......+....++...+.++. ++||++|+.+++|.++++.|+++...
T Consensus 57 ~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~ 122 (129)
T PRK02971 57 GYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINL 122 (129)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 55554443 46678888887766666666666667764 89999999999999999999998764
No 59
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.99 E-value=0.00027 Score=54.79 Aligned_cols=72 Identities=18% Similarity=0.108 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHHH--HhcccccchhhHHHHHHhhhhhheecc
Q psy14376 87 NVLPLSILFMSMISFNNLCLKNVGVSFYYIGRSLTTVFNVLFSYF--LLAQKTSFSACVCCGIIVMGFWLGVDQ 158 (327)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~pi~~~i~~~~--~~~e~~s~~~~~~~~l~~~Gv~l~~~~ 158 (327)
.+...-+++.....+++.+++..|++.+.-+.+..++.+.+.++. ++||++|..+++|+.+.++|+.++..+
T Consensus 50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~ 123 (129)
T PRK02971 50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLP 123 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccC
Confidence 444445567899999999999999999999999999889888885 799999999999999999999996643
No 60
>KOG2922|consensus
Probab=97.96 E-value=0.00022 Score=62.59 Aligned_cols=221 Identities=14% Similarity=0.079 Sum_probs=125.9
Q ss_pred HHHHHHH-HHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhhheeccCCcCcc-c
Q psy14376 88 VLPLSIL-FMSMISFNNLCLKNVGVSFYYIGRSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWLGVDQEDLAGS-F 165 (327)
Q Consensus 88 ~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~~~~~~-~ 165 (327)
+++.|++ +..+-..++.|..+.|++..+-+.+++.+..++++..++|||++....+|+.++++|-.+++....++.+ .
T Consensus 66 ~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i~ 145 (335)
T KOG2922|consen 66 LWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEIE 145 (335)
T ss_pred HHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccccc
Confidence 3344554 4577778888899999999999999999999999999999999999999999999999874432221111 1
Q ss_pred ch---------hHHH-HHHHHHHHHHHHHHHHHhhcCCCCCCceehhhhhhHHHHHHHHHHHHH--cCc--ccccccccc
Q psy14376 166 SI---------SGTV-YGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGL--FGE--LKTVQDYAD 231 (327)
Q Consensus 166 ~~---------~G~~-~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~--~~~~~~~~~ 231 (327)
+. .+.+ ++..-.+...+-....| ++++ ...++.|..+.+.+..+-.... .|. ...+...++
T Consensus 146 t~~el~~~~~~~~Fliy~~~iil~~~il~~~~~---p~~g--~tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~~q 220 (335)
T KOG2922|consen 146 SVEEVWELATEPGFLVYVIIIILIVLILIFFYA---PRYG--QTNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGNNQ 220 (335)
T ss_pred cHHHHHHHhcCccHHHHHHHHHHHHHHHheeec---cccc--ccceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCCcc
Confidence 10 1111 11111111111111112 2222 2344555544444421111000 000 000011112
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHhhh-cchHHHHHHHHHHHhCCc--cch----hhhhHHHHHHhh
Q psy14376 232 LNTAYFWLFLPIGGLCGFAIGYVTTLQIKITSPLTHNISG-TAKACAQTVIASYWYNEV--KPF----LWWVSNWVVLFG 304 (327)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~v~~~i~~~~~~~e~--~~~----~~~iG~~lii~g 304 (327)
...+..|..++....+...-....+++.+..++..++.+. -+-+.+++..|.+.|+|- .+. ....|+..++.|
T Consensus 221 l~~~~ty~~~l~~~~~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G 300 (335)
T KOG2922|consen 221 LFYPLTWIFLLVVATCVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLG 300 (335)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhhe
Confidence 2233445544444444443334467888877777554444 445667778888889873 333 355799999999
Q ss_pred hhhhhhccc
Q psy14376 305 SAAYTFVKQ 313 (327)
Q Consensus 305 ~~l~~~~~~ 313 (327)
+.+....|+
T Consensus 301 ~flL~~~kd 309 (335)
T KOG2922|consen 301 IFLLHRTKD 309 (335)
T ss_pred eeEeeeecc
Confidence 998765443
No 61
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=97.84 E-value=0.00048 Score=61.91 Aligned_cols=119 Identities=13% Similarity=0.096 Sum_probs=83.8
Q ss_pred HHHHHhhcCCCCCCceehhhhhhHHHHHHHHHHHHHcCcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14376 184 SIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGGLCGFAIGYVTTLQIKITS 263 (327)
Q Consensus 184 ~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (327)
+++.|...++. ..|......+...+.+...+... .+..++ . . .+...|..++..|++........+...++++
T Consensus 18 ~~~NK~~l~~~-~~P~~~~~~~~~~~~~~~~~~~~-~~~~~~-~---~-~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s 90 (302)
T TIGR00817 18 NIYNKKLLNVF-PYPYFKTLISLAVGSLYCLLSWS-SGLPKR-L---K-ISSALLKLLLPVAIVHTIGHVTSNVSLSKVA 90 (302)
T ss_pred HHHHHHHHhhC-ChhHHHHHHHHHHHHHHHHHHHH-hCCCCC-C---C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34557666643 36888888888887766554421 111111 1 1 1122244445555565444455678899999
Q ss_pred hhhHHhhhcchHHHHHHHHHHHhCCccchhhhhHHHHHHhhhhhhh
Q psy14376 264 PLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYT 309 (327)
Q Consensus 264 a~~~~~~~~~~~v~~~i~~~~~~~e~~~~~~~iG~~lii~g~~l~~ 309 (327)
+...+++..+.|+++.+++.++++|+++..++.|..+++.|+.+..
T Consensus 91 ~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~ 136 (302)
T TIGR00817 91 VSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS 136 (302)
T ss_pred HHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999999997653
No 62
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=97.69 E-value=0.00053 Score=61.23 Aligned_cols=132 Identities=9% Similarity=0.026 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCceehhhhhhHHHHHHHHHHHHHcCcccccccccccchhHHHHHHHHHHHHH
Q psy14376 169 GTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGGLCG 248 (327)
Q Consensus 169 G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (327)
|++++++++++|+...+..|+.. +.++.+.. ...++............+++ ..+...+..-..+|+.=
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~---g~~~~~~~--~~~~g~l~~~~~~~~~~~~~-------~~~~~~~~~g~l~G~~w 69 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG---GGPYSQTL--GTTFGALILSIAIAIFVLPE-------FWALSIFLVGLLSGAFW 69 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC---CCHHHHHH--HHHHHHHHHHHHHHHHhCCc-------ccccHHHHHHHHHHHHH
Confidence 57889999999999999998864 33443443 23445554444333332211 11223333333333332
Q ss_pred HHHHHHHHHHHHhcchhhHHhhhc-chHHHHHHHHHHHhCCccchhh----hhHHHHHHhhhhhhhhcc
Q psy14376 249 FAIGYVTTLQIKITSPLTHNISGT-AKACAQTVIASYWYNEVKPFLW----WVSNWVVLFGSAAYTFVK 312 (327)
Q Consensus 249 ~~~~~~~~~~~~~~~a~~~~~~~~-~~~v~~~i~~~~~~~e~~~~~~----~iG~~lii~g~~l~~~~~ 312 (327)
...|+..+..+++.+.+....+.+ +.++.+.+++.+++||+.+..+ ++|.++++.|+.+....+
T Consensus 70 ~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~ 138 (290)
T TIGR00776 70 ALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSK 138 (290)
T ss_pred HhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecc
Confidence 234566667788888876655555 7778899999999999999999 999999999998876543
No 63
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.67 E-value=0.00075 Score=60.69 Aligned_cols=129 Identities=13% Similarity=0.153 Sum_probs=88.9
Q ss_pred HHHHHHHHHhhcCCCCCC--ceehhhhhhHHHHHHHHHHHHHcCcccccccccccchhHHHHHHHHHHHHHHHHHHHHHH
Q psy14376 180 LALYSIHTKKVLPCVNNE--IWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGGLCGFAIGYVTTL 257 (327)
Q Consensus 180 ~a~~~v~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (327)
+..+.+.+|++.++.... +.-+++.|.....+...+.........+ .......+ ...+++-.......+.
T Consensus 12 ~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~---~~~~~~~~~~~~~~~~ 83 (303)
T PF08449_consen 12 CCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKS-----RKIPLKKY---AILSFLFFLASVLSNA 83 (303)
T ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCC-----CcChHHHH---HHHHHHHHHHHHHHHH
Confidence 334556778887765545 6677777777777666555544430000 00111112 2333444445566677
Q ss_pred HHHhcchhhHHhhhcchHHHHHHHHHHHhCCccchhhhhHHHHHHhhhhhhhhccchhH
Q psy14376 258 QIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFVKQREM 316 (327)
Q Consensus 258 ~~~~~~a~~~~~~~~~~~v~~~i~~~~~~~e~~~~~~~iG~~lii~g~~l~~~~~~~~~ 316 (327)
..++.+-.+..+....+++...+++.++++++.+..++++..++.+|+..+...+..+.
T Consensus 84 al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~ 142 (303)
T PF08449_consen 84 ALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSS 142 (303)
T ss_pred HHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccc
Confidence 78888888889999999999999999999999999999999999999999887654433
No 64
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.65 E-value=0.001 Score=60.10 Aligned_cols=140 Identities=9% Similarity=0.077 Sum_probs=93.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCCC-CceehhhhhhHHHHHHHHHHHHHcCcccccccccccchhHHHHHHHHHHH
Q psy14376 168 SGTVYGVIASASLALYSIHTKKVLPCVNN-EIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGGL 246 (327)
Q Consensus 168 ~G~~~~l~s~~~~a~~~v~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (327)
.+.+++-.-++|-+...+....+.++ +. .|...+++......++..+........+...... ....|.. +..++
T Consensus 13 ~~~~lgQ~lsl~~~~t~~~s~~l~~~-~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~---~~~~w~y-~lla~ 87 (334)
T PF06027_consen 13 IVLLLGQVLSLCITGTGTFSSLLANK-GVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVL---KRPWWKY-FLLAL 87 (334)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhc-CccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhc---chhHHHH-HHHHH
Confidence 35555555556666666666555554 33 3555555555554444444433321111111110 0112332 34466
Q ss_pred HHHHHHHHHHHHHHhcchhhHHhhhcchHHHHHHHHHHHhCCccchhhhhHHHHHHhhhhhhhhcc
Q psy14376 247 CGFAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFVK 312 (327)
Q Consensus 247 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~v~~~i~~~~~~~e~~~~~~~iG~~lii~g~~l~~~~~ 312 (327)
+=...+|..+.+.++++.+..+++.....+++.++++++++++.++.+++|+.+.++|+.+.....
T Consensus 88 ~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD 153 (334)
T PF06027_consen 88 LDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSD 153 (334)
T ss_pred HHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeec
Confidence 767789999999999999999999999999999999999999999999999999999998776543
No 65
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.64 E-value=0.00027 Score=53.84 Aligned_cols=57 Identities=7% Similarity=-0.036 Sum_probs=45.0
Q ss_pred HHHHHhcchh-hHHhhhcchHHHHHHHHHHHhCCccchhhhhHHHHHHhhhhhhhhcc
Q psy14376 256 TLQIKITSPL-THNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFVK 312 (327)
Q Consensus 256 ~~~~~~~~a~-~~~~~~~~~~v~~~i~~~~~~~e~~~~~~~iG~~lii~g~~l~~~~~ 312 (327)
.+..++.+.. .+++..-+..+..+++|+++|||++|+.+++|..++++|+...+...
T Consensus 48 s~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 48 SFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 3445555444 45666666778888999999999999999999999999998876544
No 66
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.62 E-value=0.0011 Score=50.03 Aligned_cols=54 Identities=11% Similarity=-0.040 Sum_probs=46.0
Q ss_pred HHHHHhcchhhHHhhhcchHHHHHHHHHHHhCCccchhhhhHHHHHHhhhhhhh
Q psy14376 256 TLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYT 309 (327)
Q Consensus 256 ~~~~~~~~a~~~~~~~~~~~v~~~i~~~~~~~e~~~~~~~iG~~lii~g~~l~~ 309 (327)
....++.+....-.+..+.++.+.++|+++|||++|+.+++|.++++.|+.+..
T Consensus 55 ~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 55 LLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 456777777766555669999999999999999999999999999999997653
No 67
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.58 E-value=0.0003 Score=53.65 Aligned_cols=69 Identities=17% Similarity=0.258 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHhcccccccchhHHHHH-HHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhhhee
Q psy14376 88 VLPLSILFMSMISFNNLCLKNVGVSFYYIG-RSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWLGV 156 (327)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l-~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l~~ 156 (327)
.....+++.....+...+++++|.+.+-.+ ....-+.+.+.+++++||+++..+++++.+.++|++.+-
T Consensus 33 ~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~ 102 (120)
T PRK10452 33 FILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIK 102 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Confidence 445566678899999999999999998877 578999999999999999999999999999999998753
No 68
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=97.56 E-value=0.0032 Score=55.69 Aligned_cols=141 Identities=14% Similarity=0.037 Sum_probs=91.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceehhhhhhHHHHHHHHHHHHHcCcccccccccccchhHHHHHHHHHH
Q psy14376 166 SISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGG 245 (327)
Q Consensus 166 ~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (327)
...+....+..++.|+......|+..++ ..+...........+.....+..... ..... ....+ .+...+..+
T Consensus 5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~--~~~~~~~~~ 77 (292)
T COG0697 5 LLLGLLALLLWGLLWGLSFIALKLAVES-LDPFLFAAALRFLIAALLLLPLLLLE--PRGLR--PALRP--WLLLLLLAL 77 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCChHHHHHHHHHHHHHHHHHHHHhh--ccccc--ccccc--hHHHHHHHH
Confidence 3457778888889999999988887664 23444444445555554422222111 10011 01111 122223333
Q ss_pred HHHHHHHHHHHHHHHhcchhhHHhhhcchHHHHHHHHH-HHhCCccchhhhhHHHHHHhhhhhhhhccc
Q psy14376 246 LCGFAIGYVTTLQIKITSPLTHNISGTAKACAQTVIAS-YWYNEVKPFLWWVSNWVVLFGSAAYTFVKQ 313 (327)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~v~~~i~~~-~~~~e~~~~~~~iG~~lii~g~~l~~~~~~ 313 (327)
+.....++..+..++++++...+.+.+..|++..+++. ++++|+++..++.|..+.+.|+.+......
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~ 146 (292)
T COG0697 78 LGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGG 146 (292)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCC
Confidence 33333344445668899999999999999999999996 777999999999999999999998776444
No 69
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.43 E-value=0.00085 Score=50.45 Aligned_cols=68 Identities=15% Similarity=0.144 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHhcccccccchhHHHHH-HHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhhhee
Q psy14376 89 LPLSILFMSMISFNNLCLKNVGVSFYYIG-RSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWLGV 156 (327)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l-~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l~~ 156 (327)
...-+++.....+...+++..|.+.+-.+ ....-+.+.+.+++++||+++..++.|+.+.++|+++.-
T Consensus 34 i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~ 102 (110)
T PRK09541 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVIN 102 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 34455677888888899999999998877 568889999999999999999999999999999999853
No 70
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.32 E-value=0.0011 Score=48.99 Aligned_cols=69 Identities=14% Similarity=0.115 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHhcccccccchhHHHHH-HHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhhhe
Q psy14376 87 NVLPLSILFMSMISFNNLCLKNVGVSFYYIG-RSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWLG 155 (327)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l-~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l~ 155 (327)
.....-+.+.....+...++|++|.+.+-.+ .....+.+.+.+++++||+.+..+++++.+.++|++..
T Consensus 32 ~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~L 101 (106)
T COG2076 32 PSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGL 101 (106)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHh
Confidence 3444555677888888899999999876554 78889999999999999999999999999999999874
No 71
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.31 E-value=0.0057 Score=48.10 Aligned_cols=131 Identities=15% Similarity=0.222 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCceehhhhhhHHHHHHHHHHHHHcCcccccccccccchhHHHHHHHHHHHHHH
Q psy14376 170 TVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGGLCGF 249 (327)
Q Consensus 170 ~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (327)
.++++.++.+-+......-++.++.+ +++.-.+.+...+.+.+.......++. +.. ...+...|.+ .+|+++.
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~g-s~~~as~i~~~~G~i~~~i~~~~~~~~-~~~---~~~~~p~w~~--lGG~lG~ 75 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKALG-SPLVASFISFGVGFILLLIILLITGRP-SLA---SLSSVPWWAY--LGGLLGV 75 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHHHHHHHhccc-ccc---hhccCChHHh--ccHHHHH
Confidence 46777888888888877777766654 688889999999999888888777543 222 2222222432 4677777
Q ss_pred HHHHHHHHHHHhcchhhHHhhh-cchHHHHHHHHHH-Hh---CCccchhhhhHHHHHHhhhhh
Q psy14376 250 AIGYVTTLQIKITSPLTHNISG-TAKACAQTVIASY-WY---NEVKPFLWWVSNWVVLFGSAA 307 (327)
Q Consensus 250 ~~~~~~~~~~~~~~a~~~~~~~-~~~~v~~~i~~~~-~~---~e~~~~~~~iG~~lii~g~~l 307 (327)
..-+......++.++....... .-+-+.+.+++.+ +| ++++++..++|..+++.|+.+
T Consensus 76 ~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 76 FFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 6666666667777777544433 3344555555654 22 467899999999999999853
No 72
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.25 E-value=0.0014 Score=49.26 Aligned_cols=55 Identities=4% Similarity=-0.007 Sum_probs=44.2
Q ss_pred HHHHhcchh-hHHhhhcchHHHHHHHHHHHhCCccchhhhhHHHHHHhhhhhhhhc
Q psy14376 257 LQIKITSPL-THNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFV 311 (327)
Q Consensus 257 ~~~~~~~a~-~~~~~~~~~~v~~~i~~~~~~~e~~~~~~~iG~~lii~g~~l~~~~ 311 (327)
+..++.+.. .+++..-+..+.+++.|+++|||++|+.+++|+.+++.|++..+..
T Consensus 49 ~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~ 104 (110)
T PRK09541 49 QTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL 104 (110)
T ss_pred HHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 445555544 4666666677888999999999999999999999999999987653
No 73
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.25 E-value=0.0018 Score=48.55 Aligned_cols=68 Identities=10% Similarity=0.108 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHhcccccccchhHHHHH-HHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhhhe
Q psy14376 88 VLPLSILFMSMISFNNLCLKNVGVSFYYIG-RSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWLG 155 (327)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l-~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l~ 155 (327)
.......+.....+...+++++|.+.+-.+ .....+.+.+.+++++||+++..++.++.+.+.|++..
T Consensus 38 ~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 38 GILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 444455667788888899999999887655 56888999999999999999999999999999999863
No 74
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.23 E-value=0.0011 Score=59.18 Aligned_cols=119 Identities=14% Similarity=0.089 Sum_probs=81.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceehhhhhhHHHHHHHHHHHHHcCcccccccccccchhHHHHHHHHH
Q psy14376 165 FSISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIG 244 (327)
Q Consensus 165 ~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (327)
....|+.+++.|+++.+...+++||-..|.+.+..+-. . +. .+...++.+|..++..
T Consensus 4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~--~----------------~~-----~~~l~~~~W~~G~~~~ 60 (300)
T PF05653_consen 4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAG--S----------------GG-----RSYLRRPLWWIGLLLM 60 (300)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc--c----------------hh-----hHHHhhHHHHHHHHHH
Confidence 35679999999999999999999986665432111000 0 00 0011223334333222
Q ss_pred HHHHHHHHHHHHHHHHhcchhhHHhhhcchHHHHHHHHHHHhCCccchhhhhHHHHHHhhhhhhhh
Q psy14376 245 GLCGFAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTF 310 (327)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~v~~~i~~~~~~~e~~~~~~~iG~~lii~g~~l~~~ 310 (327)
.++...+ +.++...+++..+.++.+.-+.+.+++..+++|+++..+++|..+++.|..+...
T Consensus 61 -~~g~~~~---~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~ 122 (300)
T PF05653_consen 61 -VLGEILN---FVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVI 122 (300)
T ss_pred -hcchHHH---HHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEE
Confidence 2333333 3356777888889999999999999999999999999999999999999986553
No 75
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.19 E-value=0.0022 Score=47.78 Aligned_cols=68 Identities=15% Similarity=0.128 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHhcccccccchhHHHHH-HHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhhhe
Q psy14376 88 VLPLSILFMSMISFNNLCLKNVGVSFYYIG-RSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWLG 155 (327)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l-~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l~ 155 (327)
....-.++.....+...+++.+|.+.+-.+ .....+.+.+.+++++||++++.+++++.+.+.|++..
T Consensus 32 ~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l 100 (105)
T PRK11431 32 SIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGL 100 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence 334455677888888899999999887655 56889999999999999999999999999999999874
No 76
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.06 E-value=0.0056 Score=45.84 Aligned_cols=55 Identities=11% Similarity=0.036 Sum_probs=45.6
Q ss_pred HHHHHHhcchh-hHHhhhcchHHHHHHHHHHHhCCccchhhhhHHHHHHhhhhhhh
Q psy14376 255 TTLQIKITSPL-THNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYT 309 (327)
Q Consensus 255 ~~~~~~~~~a~-~~~~~~~~~~v~~~i~~~~~~~e~~~~~~~iG~~lii~g~~l~~ 309 (327)
..+..|+.+.. .+++..-...+.+++.|+++|||++|+.+++|+.+++.|+...+
T Consensus 52 Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 52 LSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 34556665554 57777788889999999999999999999999999999998753
No 77
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.04 E-value=0.0053 Score=45.68 Aligned_cols=56 Identities=9% Similarity=-0.022 Sum_probs=46.8
Q ss_pred HHHHHHhcchh-hHHhhhcchHHHHHHHHHHHhCCccchhhhhHHHHHHhhhhhhhh
Q psy14376 255 TTLQIKITSPL-THNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTF 310 (327)
Q Consensus 255 ~~~~~~~~~a~-~~~~~~~~~~v~~~i~~~~~~~e~~~~~~~iG~~lii~g~~l~~~ 310 (327)
.....|..+.. .+++..-+..+.+++.|+++|||++|+.+++|+.+++.|++..+.
T Consensus 46 Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 46 LAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 34556665554 678888888899999999999999999999999999999987643
No 78
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.00 E-value=0.0047 Score=45.60 Aligned_cols=55 Identities=11% Similarity=0.118 Sum_probs=45.8
Q ss_pred HHHHHhcchh-hHHhhhcchHHHHHHHHHHHhCCccchhhhhHHHHHHhhhhhhhh
Q psy14376 256 TLQIKITSPL-THNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTF 310 (327)
Q Consensus 256 ~~~~~~~~a~-~~~~~~~~~~v~~~i~~~~~~~e~~~~~~~iG~~lii~g~~l~~~ 310 (327)
.+.+|+.+-. .+++.+-...+.+.+.|+++|||++++.+++|..+++.|++..+.
T Consensus 48 s~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 48 SLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL 103 (106)
T ss_pred HHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence 3456665544 577888888889999999999999999999999999999987654
No 79
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.95 E-value=0.0028 Score=46.26 Aligned_cols=58 Identities=22% Similarity=0.241 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhcccccccchhHHHHH-HHHHHHHHHHHHHHHhcccccchhhHHHHH
Q psy14376 90 PLSILFMSMISFNNLCLKNVGVSFYYIG-RSLTTVFNVLFSYFLLAQKTSFSACVCCGI 147 (327)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l-~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l 147 (327)
....+++....+...+++++|.+.+-.+ .....+.+.+.+.+++||++|..++.++.+
T Consensus 34 ~~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~l 92 (93)
T PF00893_consen 34 LAVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGL 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheee
Confidence 3444677888899999999999988554 679999999999999999999999999875
No 80
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=96.87 E-value=0.0043 Score=53.85 Aligned_cols=76 Identities=11% Similarity=0.138 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhhHHhhhcchHHHHHHHHHHHhCCccchhhhhHHHHHHhhhhhhhhccch
Q psy14376 239 LFLPIGGLCGFAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFVKQR 314 (327)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~v~~~i~~~~~~~e~~~~~~~iG~~lii~g~~l~~~~~~~ 314 (327)
......+++=.+-+...+...++.+|.+.+++...+.+.+.++++++++++++..||++..+...|+.+.......
T Consensus 18 ~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~ 93 (244)
T PF04142_consen 18 LKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ 93 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence 3334555554445666677899999999999999999999999999999999999999999999999987765443
No 81
>PRK13499 rhamnose-proton symporter; Provisional
Probab=96.69 E-value=0.017 Score=52.36 Aligned_cols=138 Identities=15% Similarity=0.030 Sum_probs=79.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceehhhhhhHHHHHH--HHHHH-HHcCcccccccccccchhHHHHHHH
Q psy14376 166 SISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSII--LLFVS-GLFGELKTVQDYADLNTAYFWLFLP 242 (327)
Q Consensus 166 ~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (327)
...|+++++++++|++...+-+|| .++. ++|.. |- ..+.+. +.|+. -..+. +...+.-...+...+....
T Consensus 5 ~~~G~~~~~i~~~~~GS~~~p~K~-~k~w---~wE~~-W~-v~gi~~wl~~~~~~g~~~~-~~f~~~~~~~~~~~~~~~~ 77 (345)
T PRK13499 5 IILGIIWHLIGGASSGSFYAPFKK-VKKW---SWETM-WS-VGGIFSWLILPWLIAALLL-PDFWAYYSSFSGSTLLPVF 77 (345)
T ss_pred hHHHHHHHHHHHHHhhcccccccc-cCCC---chhHH-HH-HHHHHHHHHHHHHHHHHHh-hhHHHHHHhcCHHHHHHHH
Confidence 356999999999999999998887 4533 34444 43 222221 11211 11112 1111111112333344445
Q ss_pred HHHHHHHHHHHHHHHHHHhcchh-hHHhhhcchHHHHHHHHHHHhCCcc---c----hhhhhHHHHHHhhhhhhhh
Q psy14376 243 IGGLCGFAIGYVTTLQIKITSPL-THNISGTAKACAQTVIASYWYNEVK---P----FLWWVSNWVVLFGSAAYTF 310 (327)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~a~-~~~~~~~~~~v~~~i~~~~~~~e~~---~----~~~~iG~~lii~g~~l~~~ 310 (327)
++|++=..-|......+++.+-+ ...+..-+..+.+++++.+++||-. + ..-.+|.+++++|+.+..+
T Consensus 78 l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~ 153 (345)
T PRK13499 78 LFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGR 153 (345)
T ss_pred HHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 55544333455555555555544 3444445677888999999999744 3 2355788899999998776
No 82
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=96.64 E-value=0.0005 Score=58.06 Aligned_cols=207 Identities=15% Similarity=0.059 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHhcccccccchhHHHHH-HHHHHHHHHHHHHHHhcccccchhh----HHHHHHhhhhhheeccCCcC--
Q psy14376 90 PLSILFMSMISFNNLCLKNVGVSFYYIG-RSLTTVFNVLFSYFLLAQKTSFSAC----VCCGIIVMGFWLGVDQEDLA-- 162 (327)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l-~~~~pi~~~i~~~~~~~e~~s~~~~----~~~~l~~~Gv~l~~~~~~~~-- 162 (327)
..|++-...+..+..+.++.++|.+--+ ..++-+-+.+++++.++|=.+..+. .++++.+.|+.+....+.++
T Consensus 64 isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~ 143 (288)
T COG4975 64 ISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKE 143 (288)
T ss_pred HhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecccccc
Confidence 3344445677777888999888777544 5567788889999999997666653 56677788888866555321
Q ss_pred ---cccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceehhhhhhHHHHHHHHHHHHHcCcccccccccccchhHHHH
Q psy14376 163 ---GSFSISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWL 239 (327)
Q Consensus 163 ---~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (327)
.++--.|+...+.|.+.|-.|.+..+... .+.+....-|..-..+.-+.+....+|. ..+...|.
T Consensus 144 ~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f~----v~g~saiLPqAiGMv~~ali~~~~~~~~--------~~~K~t~~ 211 (288)
T COG4975 144 EENPSNLKKGIVILLISTLGYVGYVVLFQLFD----VDGLSAILPQAIGMVIGALILGFFKMEK--------RFNKYTWL 211 (288)
T ss_pred ccChHhhhhheeeeeeeccceeeeEeeecccc----ccchhhhhHHHHHHHHHHHHHhhccccc--------chHHHHHH
Confidence 12223588888889999999998877642 3344444333222222222222222211 11222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc-chhhHHhhhcchHHHHHHHHHHHhCCccchhhh----hHHHHHHhhhhhhhh
Q psy14376 240 FLPIGGLCGFAIGYVTTLQIKIT-SPLTHNISGTAKACAQTVIASYWYNEVKPFLWW----VSNWVVLFGSAAYTF 310 (327)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~-~a~~~~~~~~~~~v~~~i~~~~~~~e~~~~~~~----iG~~lii~g~~l~~~ 310 (327)
- ...|+.=...|.+.+...++. -|+..+ +..+.-+.+++-|+++++|+-|..++ +|.++++.|..+...
T Consensus 212 n-ii~G~~Wa~GNl~ml~a~~~~GvAt~FS-lSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg~ 285 (288)
T COG4975 212 N-IIPGLIWAIGNLFMLLAAQKVGVATSFS-LSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLGI 285 (288)
T ss_pred H-HhhHHHHHhhHHHHHHhhhhhceeeeee-HhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhhe
Confidence 2 222222122233333333332 333333 33455677888899999999987655 688888888776543
No 83
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=96.45 E-value=0.071 Score=45.58 Aligned_cols=57 Identities=11% Similarity=0.110 Sum_probs=51.7
Q ss_pred HHHHHhcccccccchhHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhh
Q psy14376 97 SMISFNNLCLKNVGVSFYYIGRSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFW 153 (327)
Q Consensus 97 ~~~~~~~~~l~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~ 153 (327)
.-..+...++...|...+.++.+..|.+.++.++++++|.+|..||.++...+.+.+
T Consensus 222 lPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsa 278 (292)
T COG5006 222 LPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASA 278 (292)
T ss_pred cchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 455677789999999999999999999999999999999999999999988877665
No 84
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=96.44 E-value=0.059 Score=47.05 Aligned_cols=119 Identities=16% Similarity=0.183 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHhhhccCccccCCCCCCCChhhHHH
Q psy14376 8 SRYVKITLAVSLYWLVSIITVFVNKALLSELKLDAPLFITWFQCVISAFLCIFLHIFSLFFPNILTFPTGNPFRLNTLIN 87 (327)
Q Consensus 8 ~~~~~~~~~~~~~~~~s~~~~~~~k~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 87 (327)
+....+++..+.|+.-+. +.|+. +. .|....+-|.+.-.+...++....++ .+ ++++.++.
T Consensus 138 kgi~~Ll~stigy~~Y~~----~~~~~----~~-~~~~~~lPqaiGm~i~a~i~~~~~~~------~~----~~k~~~~n 198 (269)
T PF06800_consen 138 KGILALLISTIGYWIYSV----IPKAF----HV-SGWSAFLPQAIGMLIGAFIFNLFSKK------PF----FEKKSWKN 198 (269)
T ss_pred hHHHHHHHHHHHHHHHHH----HHHhc----CC-ChhHhHHHHHHHHHHHHHHHhhcccc------cc----cccchHHh
Confidence 344444555555555333 23542 23 57777777766555555544443311 11 33444555
Q ss_pred HHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHH
Q psy14376 88 VLPLSILFMSMISFNNLCLKNVGVSFYYIGRSLTTVFNVLFSYFLLAQKTSFSACVCCG 146 (327)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~ 146 (327)
+ ..|++......+...+.+.+..+.+-.+.++.++...+.+.+++||+=+++|+....
T Consensus 199 i-l~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~ 256 (269)
T PF06800_consen 199 I-LTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTL 256 (269)
T ss_pred h-HHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHH
Confidence 4 668888888888899999999999999999999999999999999999999875443
No 85
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=96.08 E-value=0.15 Score=43.54 Aligned_cols=67 Identities=13% Similarity=0.064 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhhh
Q psy14376 88 VLPLSILFMSMISFNNLCLKNVGVSFYYIGRSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWL 154 (327)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l 154 (327)
.....++......+-.+.++|.+...-+....+.++++.+++.++++|+++..++.|+.+.+.|+.+
T Consensus 155 ~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 155 VWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 3344444556666777889999999999999999999999999999999999999999999988753
No 86
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.89 E-value=0.15 Score=40.25 Aligned_cols=136 Identities=15% Similarity=0.105 Sum_probs=82.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceehhhhhhHHHHHHHHHHHHHcCcccccccccccchhHHHHHHHHHHH
Q psy14376 167 ISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGGL 246 (327)
Q Consensus 167 ~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (327)
++..+..+.++.+-....-..-++.+..+ +|..-...+...|++.+....... +..+-.+. .. +...|. ..+|+
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~-spl~As~isf~vGt~~L~~l~l~~-~~~~~~a~-~~-~~pwW~--~~GG~ 77 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYLG-SPLLASLISFLVGTVLLLILLLIK-QGHPGLAA-VA-SAPWWA--WIGGL 77 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHHHHHHh-cCCCchhh-cc-CCchHH--HHccc
Confidence 45667778888888887776666655543 677778888888888887777664 32222221 11 111233 34556
Q ss_pred HHHHHHHHHHHHHHhcchhh-HHhhhcchHHHHHHHHHHHhC----CccchhhhhHHHHHHhhhhhh
Q psy14376 247 CGFAIGYVTTLQIKITSPLT-HNISGTAKACAQTVIASYWYN----EVKPFLWWVSNWVVLFGSAAY 308 (327)
Q Consensus 247 ~~~~~~~~~~~~~~~~~a~~-~~~~~~~~~v~~~i~~~~~~~----e~~~~~~~iG~~lii~g~~l~ 308 (327)
++...-+.......+.+++. ......-+.+.+.+++.+=+. .+++...++|.+++++|+.+.
T Consensus 78 lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~ 144 (150)
T COG3238 78 LGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLA 144 (150)
T ss_pred hhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHh
Confidence 66655444455556666653 333334444555555544332 468899999999999995443
No 87
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=95.65 E-value=0.8 Score=35.94 Aligned_cols=121 Identities=12% Similarity=0.125 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHhhhccCccccCCCCCCCChhhHHHHHHHHHHHHHHHHHhc
Q psy14376 24 SIITVFVNKALLSELKLDAPLFITWFQCVISAFLCIFLHIFSLFFPNILTFPTGNPFRLNTLINVLPLSILFMSMISFNN 103 (327)
Q Consensus 24 s~~~~~~~k~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (327)
...+.-+|-.+-++.+ +|+.-++.-+..+.+.+.++....++. +..+.+ +...+....|++......+..
T Consensus 13 i~~q~~~N~~L~~~~g--s~~~as~i~~~~G~i~~~i~~~~~~~~-~~~~~~-------~~p~w~~lGG~lG~~~V~~~~ 82 (138)
T PF04657_consen 13 IALQAAFNGQLGKALG--SPLVASFISFGVGFILLLIILLITGRP-SLASLS-------SVPWWAYLGGLLGVFFVLSNI 82 (138)
T ss_pred HHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHHHHHHHhccc-ccchhc-------cCChHHhccHHHHHHHHHHHH
Confidence 3333345554444332 588899999999999988887766542 111111 112334446667778888888
Q ss_pred ccccccchhHHHHHH-HHHHHHHHHHHHH----HhcccccchhhHHHHHHhhhhhh
Q psy14376 104 LCLKNVGVSFYYIGR-SLTTVFNVLFSYF----LLAQKTSFSACVCCGIIVMGFWL 154 (327)
Q Consensus 104 ~~l~~~~~~~~~~l~-~~~pi~~~i~~~~----~~~e~~s~~~~~~~~l~~~Gv~l 154 (327)
.....++++....+. .-+-+...++..+ .-|++++++|+.++.+.+.|+.+
T Consensus 83 ~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 83 ILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 888999888777664 4445555666654 35788999999999999999864
No 88
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=95.51 E-value=0.047 Score=39.74 Aligned_cols=46 Identities=11% Similarity=0.208 Sum_probs=25.2
Q ss_pred HHHHHhcchh-hHHhhhcchHHHHHHHHHHHhCCccchhhhhHHHHH
Q psy14376 256 TLQIKITSPL-THNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVV 301 (327)
Q Consensus 256 ~~~~~~~~a~-~~~~~~~~~~v~~~i~~~~~~~e~~~~~~~iG~~li 301 (327)
.+..|+.+.. .+.+..-+..+...+.|+++|||++|+.+++|..++
T Consensus 47 ~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 47 SLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 4556666555 456666678889999999999999999999998775
No 89
>KOG4510|consensus
Probab=95.35 E-value=0.015 Score=49.92 Aligned_cols=133 Identities=12% Similarity=0.122 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceehhhhhhHHHHHHHHHHHHHcCcccccccccccchhHHHHH-HHHHHH
Q psy14376 168 SGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLF-LPIGGL 246 (327)
Q Consensus 168 ~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 246 (327)
+|..+.-+| ..+....+..++.... +|.+......+.-..+..|..... ...+ ........|++ =-..|.
T Consensus 38 ~gl~l~~vs-~ff~~~~vv~t~~~e~---~p~e~a~~r~l~~mlit~pcliy~--~~~v---~gp~g~R~~LiLRg~mG~ 108 (346)
T KOG4510|consen 38 LGLLLLTVS-YFFNSCMVVSTKVLEN---DPMELASFRLLVRMLITYPCLIYY--MQPV---IGPEGKRKWLILRGFMGF 108 (346)
T ss_pred cCceehhhH-HHHhhHHHhhhhhhcc---ChhHhhhhhhhhehhhhheEEEEE--eeee---ecCCCcEEEEEeehhhhh
Confidence 577777777 6667777777776553 455555544222222223322221 1111 01111111221 112233
Q ss_pred HHHHHHHHHHHHHHhcchhhHHhhhcchHHHHHHHHHHHhCCccchhhhhHHHHHHhhhhhhhhcc
Q psy14376 247 CGFAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFVK 312 (327)
Q Consensus 247 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~v~~~i~~~~~~~e~~~~~~~iG~~lii~g~~l~~~~~ 312 (327)
.+.+..|..++.+...+| +++....|+++.++++.+++|+.|..+.+|..+.+.|+++....+
T Consensus 109 tgvmlmyya~~~mslaDA---~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPp 171 (346)
T KOG4510|consen 109 TGVMLMYYALMYMSLADA---VVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPP 171 (346)
T ss_pred hHHHHHHHHHhhcchhhe---EEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCC
Confidence 444444444444444444 566778999999999999999999999999999999999877644
No 90
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=95.29 E-value=0.039 Score=41.46 Aligned_cols=68 Identities=22% Similarity=0.148 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHhcccccccchhHHHHH-HHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhhh
Q psy14376 86 INVLPLSILFMSMISFNNLCLKNVGVSFYYIG-RSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWL 154 (327)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l-~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l 154 (327)
+..+ .-+++......+++.+...+.|.+.-+ .+++-+++.+.++++.+|..+++.+.|+.+.++|+.+
T Consensus 43 ~y~i-pf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 43 KYII-PFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHHH-HHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 4444 344555666677778889999988877 5899999999998888888899999999999999875
No 91
>KOG2234|consensus
Probab=95.06 E-value=0.66 Score=41.83 Aligned_cols=140 Identities=10% Similarity=0.016 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCC--CCCceehhhhhhHHHHHHHHHHHHHcCcc---cccccc--cccchhHHHHHHH
Q psy14376 170 TVYGVIASASLALYSIHTKKVLPCV--NNEIWLLSYYNNVYSSIILLFVSGLFGEL---KTVQDY--ADLNTAYFWLFLP 242 (327)
Q Consensus 170 ~~~~l~s~~~~a~~~v~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~ 242 (327)
.+..+...+-.+......|...+++ +..+....+.+-+.-.++........... ...... ..+.++....-+.
T Consensus 17 ~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~ 96 (345)
T KOG2234|consen 17 YLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVS 96 (345)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHH
Confidence 3444445555555555555443332 23455555555555555554444443111 111111 1111221112222
Q ss_pred HHHHHHHHHHHHHHHHHHhcchhhHHhhhcchHHHHHHHHHHHhCCccchhhhhHHHHHHhhhhhhh
Q psy14376 243 IGGLCGFAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYT 309 (327)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~v~~~i~~~~~~~e~~~~~~~iG~~lii~g~~l~~ 309 (327)
..+++=.+-|...+....+.+|+++++...++...+.++++++++++++..||...++...|+.+..
T Consensus 97 vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ 163 (345)
T KOG2234|consen 97 VPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQ 163 (345)
T ss_pred HHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence 3333333334444567889999999999999999999999999999999999999999999998877
No 92
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=94.97 E-value=0.75 Score=38.75 Aligned_cols=109 Identities=7% Similarity=0.105 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccCccccCCCCCCCChhhHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHH
Q psy14376 43 PLFITWFQCVISAFLCIFLHIFSLFFPNILTFPTGNPFRLNTLINVLPLSILFMSMISFNNLCLKNVGVSFYYIGRSLTT 122 (327)
Q Consensus 43 p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~p 122 (327)
...-.++..+++..++..+.....++. +.... .+++.+....++..|++-.+...+.-+++.-++...++++.++.-
T Consensus 185 d~dtmfYnNllslPiL~~~s~~~edws-~~n~a--nnl~~d~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNK 261 (309)
T COG5070 185 DFDTMFYNNLLSLPILLSFSFLFEDWS-PGNLA--NNLSVDSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNK 261 (309)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHhccCC-cchhh--cCCChHHHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhh
Confidence 455678888888888887776654332 11111 234455556777778877788888889999999999999999999
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHhhhhhh
Q psy14376 123 VFNVLFSYFLLAQKTSFSACVCCGIIVMGFWL 154 (327)
Q Consensus 123 i~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l 154 (327)
...++.+.++++|+.++..+.++++++...++
T Consensus 262 lp~alaGlvffdap~nf~si~sillGflsg~i 293 (309)
T COG5070 262 LPIALAGLVFFDAPVNFLSIFSILLGFLSGAI 293 (309)
T ss_pred ChHHHhhhhhcCCchhHHHHHHHHHHHHHHHH
Confidence 99999999999999999988888887765555
No 93
>KOG1441|consensus
Probab=94.18 E-value=0.096 Score=47.00 Aligned_cols=128 Identities=13% Similarity=0.242 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHh--cCCCChhHHHHHHHHHHHHHHHH-HHHHhhhccCcccc-CCCCCCCChhhHHHHHHHHHHHHHHH
Q psy14376 24 SIITVFVNKALLS--ELKLDAPLFITWFQCVISAFLCI-FLHIFSLFFPNILT-FPTGNPFRLNTLINVLPLSILFMSMI 99 (327)
Q Consensus 24 s~~~~~~~k~~l~--~~~~~~p~~l~~~r~~~~~~~l~-~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~ 99 (327)
...-.+..|..+. +++. .+..+...+.-.+...+. ++...... ++... .. .+++.+ .-.....++++...+
T Consensus 175 ~al~~I~~~~ll~~~~~~~-~~~~ll~y~ap~s~~~Ll~P~~~~~~~-~~~~~~~~--~~~~~~-~~~~~~~sv~~f~~N 249 (316)
T KOG1441|consen 175 FALRNILSKKLLTSKGESL-NSMNLLYYTAPISLIFLLIPFLDYVEG-NKFVGFLT--APWFVT-FLILLLNSVLAFLLN 249 (316)
T ss_pred HHHHHHHHHHhhhcccccc-CchHHHHHhhhHHHHHHhcchHhhhcc-cceeeeec--cccchh-hHHHHHHHHHHHHHH
Confidence 3333345566663 4566 478888888777777777 65443211 10000 00 123333 233344456666777
Q ss_pred HHhcccccccchhHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhhhee
Q psy14376 100 SFNNLCLKNVGVSFYYIGRSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWLGV 156 (327)
Q Consensus 100 ~~~~~~l~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l~~ 156 (327)
...+..+..+++-++++.....=+.+...++++++|+.++.+.+|..+.++|+.+-.
T Consensus 250 ls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~ 306 (316)
T KOG1441|consen 250 LSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYS 306 (316)
T ss_pred HHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHH
Confidence 888889999999999999999999999999999999999999999999999998843
No 94
>KOG1581|consensus
Probab=94.11 E-value=0.88 Score=40.16 Aligned_cols=119 Identities=14% Similarity=0.134 Sum_probs=82.9
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHhhhccCccccCCCCCCCChhhHHHHHHHHHHHHHHHHHhcccccccch
Q psy14376 32 KALLSELKLDAPLFITWFQCVISAFLCIFLHIFSLFFPNILTFPTGNPFRLNTLINVLPLSILFMSMISFNNLCLKNVGV 111 (327)
Q Consensus 32 k~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 111 (327)
+.++.+.+. .+..+.+.-.+...++-.......+-......+-+ -.++-++++++.+.+...++.+-+.-++--.+
T Consensus 192 d~lf~~~k~-s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~---~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGs 267 (327)
T KOG1581|consen 192 DSLFKKYKV-SSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIK---EHPDVAFDILLYSTCGAVGQLFIFYTIERFGS 267 (327)
T ss_pred HHHhccCCc-cHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHH---cChhHHHHHHHHHHhhhhhhheehhhHhhccc
Confidence 445555566 46666555555555555444332221111112211 33556788999999998888887777777777
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhhh
Q psy14376 112 SFYYIGRSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWL 154 (327)
Q Consensus 112 ~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l 154 (327)
-+.+++..+-=++.+.++.+.++++++..+|.|+.+.+.|+.+
T Consensus 268 lt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l 310 (327)
T KOG1581|consen 268 LTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFL 310 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHH
Confidence 7778888888899999999999999999999999988888766
No 95
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=94.02 E-value=0.022 Score=48.38 Aligned_cols=131 Identities=8% Similarity=-0.006 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCceehhhhhhHHHHHHHHHHHHHcCcccccccccccchhHHHHHHHHHHHHH
Q psy14376 169 GTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGGLCG 248 (327)
Q Consensus 169 G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (327)
.++.+++=++.|+.......|.-. +|.+...-+.+-+.++.+...++. ++ .. ....+..-..+|.+=
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~GG----~p~qQ~lGtT~GALifaiiv~~~~-~p-------~~-T~~~~iv~~isG~~W 69 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKFGG----KPYQQTLGTTLGALIFAIIVFLFV-SP-------EL-TLTIFIVGFISGAFW 69 (288)
T ss_pred hHHHHHHHHHHhcccceeeeecCC----ChhHhhhhccHHHHHHHHHHheee-cC-------cc-chhhHHHHHHhhhHh
Confidence 467788888999987766655432 455555544333333333222221 11 11 112233333444433
Q ss_pred HHHHHHHHHHHHhcchhhHHh-hhcchHHHHHHHHHHHhCCccchhhh-hH---HHHHHhhhhhhhhcc
Q psy14376 249 FAIGYVTTLQIKITSPLTHNI-SGTAKACAQTVIASYWYNEVKPFLWW-VS---NWVVLFGSAAYTFVK 312 (327)
Q Consensus 249 ~~~~~~~~~~~~~~~a~~~~~-~~~~~~v~~~i~~~~~~~e~~~~~~~-iG---~~lii~g~~l~~~~~ 312 (327)
.+-+...++.++..+.+.+.. ..-.+-+-+.++|+++|||-.+..+. +| .++++.|.++-.+.+
T Consensus 70 s~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~ 138 (288)
T COG4975 70 SFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQD 138 (288)
T ss_pred hhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeec
Confidence 344555667776665553333 33456677889999999999887665 34 457788887766644
No 96
>KOG2765|consensus
Probab=92.46 E-value=1.4 Score=40.18 Aligned_cols=140 Identities=15% Similarity=0.137 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCChhHHHHHHHHHHHHHHHHHHHHhhhccCccccCCCCCCCChhhHHHH
Q psy14376 11 VKITLAVSLYWLVSIITVFVNKALLSEL--KLDAPLFITWFQCVISAFLCIFLHIFSLFFPNILTFPTGNPFRLNTLINV 88 (327)
Q Consensus 11 ~~~~~~~~~~~~~s~~~~~~~k~~l~~~--~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 88 (327)
..-.+.+.+|+.-... + |.-..++ +.+-+.++-+.-.+--.++..+...+...+....+.|+ + .++-.+
T Consensus 250 llaL~sA~~YavY~vl---l-k~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~----~-~q~~~v 320 (416)
T KOG2765|consen 250 LLALLSALLYAVYTVL---L-KRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPS----S-TQFSLV 320 (416)
T ss_pred HHHHHHHHHHHHHHHH---H-HhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCC----C-ceeEee
Confidence 3334445555443332 2 4444433 56667765555433222222222222222111224443 1 122334
Q ss_pred HHHHHHH-HHHHHHhcccccccchhHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhhheeccC
Q psy14376 89 LPLSILF-MSMISFNNLCLKNVGVSFYYIGRSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWLGVDQE 159 (327)
Q Consensus 89 ~~~~~~~-~~~~~~~~~~l~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~ 159 (327)
+..+++. ...=++|-+|.-.+++-.+++-.+.+....++...++.++++|...++|....++|.+++....
T Consensus 321 v~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~ 392 (416)
T KOG2765|consen 321 VFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISS 392 (416)
T ss_pred eHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccc
Confidence 4444443 3677788888889999999999999999999999999999999999999999999998865543
No 97
>KOG1444|consensus
Probab=91.96 E-value=0.83 Score=40.60 Aligned_cols=122 Identities=12% Similarity=0.063 Sum_probs=80.5
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHhhhccC-ccccCCCCCCCChhhHHHHHHHHHHHHHHHHHhccccccc
Q psy14376 31 NKALLSELKLDAPLFITWFQCVISAFLCIFLHIFSLFFP-NILTFPTGNPFRLNTLINVLPLSILFMSMISFNNLCLKNV 109 (327)
Q Consensus 31 ~k~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 109 (327)
.|......++ .-..+.++..+.+...+.+..++..+.+ -..+.+. -.+...+..+...+++..+-..+..++....
T Consensus 176 ~kk~vd~~~l-~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~--~~~~~~~~~~~lScv~gf~isy~s~~ct~~~ 252 (314)
T KOG1444|consen 176 VKKSVDSANL-NKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDN--WSDSSVLVVMLLSCVMGFGISYTSFLCTRVN 252 (314)
T ss_pred HHHhhccccc-cceeEEeehhHHHHHHHHHHHHHhcchHHHHhhccc--ccchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3555544445 3566778888888888888877665432 0111111 0112223444444555556777777888899
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhhhe
Q psy14376 110 GVSFYYIGRSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWLG 155 (327)
Q Consensus 110 ~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l~ 155 (327)
|+...++.....-..+.+...++.+++.++....|+.++++|-++-
T Consensus 253 SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y 298 (314)
T KOG1444|consen 253 SATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLY 298 (314)
T ss_pred cccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHH
Confidence 9988888886666667777777777888999999999888888773
No 98
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=90.78 E-value=1.8 Score=32.61 Aligned_cols=49 Identities=12% Similarity=-0.003 Sum_probs=35.6
Q ss_pred HHhcchhhHHhh-hcchHHHHHHHHHHHhCCccchhhhhHHHHHHhhhhh
Q psy14376 259 IKITSPLTHNIS-GTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAA 307 (327)
Q Consensus 259 ~~~~~a~~~~~~-~~~~~v~~~i~~~~~~~e~~~~~~~iG~~lii~g~~l 307 (327)
.++.+-+....+ ..+.-+++.+.++++.+|..+...++|+.+++.|+.+
T Consensus 62 L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 62 LGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 444444433333 3566677888888877788888999999999999864
No 99
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.55 E-value=9.1 Score=30.38 Aligned_cols=127 Identities=12% Similarity=0.107 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHhhhccCccccCCCCCCCChhhHHHHHHHHHHHHHHHH
Q psy14376 21 WLVSIITVFVNKALLSELKLDAPLFITWFQCVISAFLCIFLHIFSLFFPNILTFPTGNPFRLNTLINVLPLSILFMSMIS 100 (327)
Q Consensus 21 ~~~s~~~~~~~k~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (327)
+.......-+|-.+-+. .++|+.-.+.-+..+...+..+...+.+++... ..++...+....|++...+..
T Consensus 14 G~~l~~Q~~iN~qL~~~--~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a-------~~~~~pwW~~~GG~lGa~~vt 84 (150)
T COG3238 14 GALLPLQAAINGRLARY--LGSPLLASLISFLVGTVLLLILLLIKQGHPGLA-------AVASAPWWAWIGGLLGAIFVT 84 (150)
T ss_pred hhhhhhHHHHHHHHHHH--cCChHHHHHHHHHHHHHHHHHHHHHhcCCCchh-------hccCCchHHHHccchhhhhhh
Confidence 33334444455544432 336898899999998888888777643322111 112223334444555555555
Q ss_pred HhcccccccchhHHH-HHHHHHHHHHHHHHHHH----hcccccchhhHHHHHHhhhhhhee
Q psy14376 101 FNNLCLKNVGVSFYY-IGRSLTTVFNVLFSYFL----LAQKTSFSACVCCGIIVMGFWLGV 156 (327)
Q Consensus 101 ~~~~~l~~~~~~~~~-~l~~~~pi~~~i~~~~~----~~e~~s~~~~~~~~l~~~Gv~l~~ 156 (327)
.+......+.+...+ +..+-+-+.-+++..+= -+++++..++.++++.++|+.+..
T Consensus 85 ~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~ 145 (150)
T COG3238 85 SSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLAR 145 (150)
T ss_pred hhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhc
Confidence 555566666555444 44555666666666553 246789999999999999965543
No 100
>KOG4314|consensus
Probab=89.30 E-value=0.5 Score=38.94 Aligned_cols=64 Identities=11% Similarity=0.033 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhcchhhHHhhhcchHHHHHHHHHHHhCCccchhhhhHHHHHHhhhhhhhhccch
Q psy14376 251 IGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFVKQR 314 (327)
Q Consensus 251 ~~~~~~~~~~~~~a~~~~~~~~~~~v~~~i~~~~~~~e~~~~~~~iG~~lii~g~~l~~~~~~~ 314 (327)
.+|....+.++.+|+.++-+......+..+++++++||+.....++..++.+.|++...|..+.
T Consensus 66 aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~ 129 (290)
T KOG4314|consen 66 ANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNE 129 (290)
T ss_pred CCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccch
Confidence 3566667788999998888889999999999999999999999999999999999887765543
No 101
>KOG1580|consensus
Probab=88.47 E-value=0.43 Score=40.46 Aligned_cols=70 Identities=14% Similarity=0.062 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhhh
Q psy14376 85 LINVLPLSILFMSMISFNNLCLKNVGVSFYYIGRSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWL 154 (327)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l 154 (327)
+.++...+++.+.++.+-+.-..+-++-.-+++..+--.|+.+.++++++++++.+||++.++.+.|...
T Consensus 241 ~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~ 310 (337)
T KOG1580|consen 241 FWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTA 310 (337)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhh
Confidence 4455666666676666666656666666666777778899999999999999999999999999998877
No 102
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=87.01 E-value=0.96 Score=39.33 Aligned_cols=25 Identities=28% Similarity=0.614 Sum_probs=20.0
Q ss_pred chhhhhHHHHHHhhhhhhhhccchh
Q psy14376 291 PFLWWVSNWVVLFGSAAYTFVKQRE 315 (327)
Q Consensus 291 ~~~~~iG~~lii~g~~l~~~~~~~~ 315 (327)
.+..++|++++++|..++...|..+
T Consensus 115 ~~Ln~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 115 PWLNYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred hHHHHHHHHHHHHHHHheeeecCCC
Confidence 3678899999999999888765443
No 103
>KOG2922|consensus
Probab=84.46 E-value=0.45 Score=42.28 Aligned_cols=120 Identities=18% Similarity=0.175 Sum_probs=79.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceehhhhhhHHHHHHHHHHHHHcCcccccccccccchhHHHHHHHH
Q psy14376 164 SFSISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPI 243 (327)
Q Consensus 164 ~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (327)
..+..|.++++.|.+..+...++.||-.+|.+.. . .-.++. ......++.+|..++.
T Consensus 17 ~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~~--~-----------------~ra~~g----g~~yl~~~~Ww~G~lt 73 (335)
T KOG2922|consen 17 SDNIIGLVLAISSSIFIGSSFILKKKGLKRAGAS--G-----------------LRAGEG----GYGYLKEPLWWAGMLT 73 (335)
T ss_pred cCceeeeeehhhccEEEeeehhhhHHHHHHHhhh--c-----------------ccccCC----CcchhhhHHHHHHHHH
Confidence 4567899999999999999888888766643210 0 000010 0011123333333221
Q ss_pred HHHHHHHHHHHHHHHHHhcchhhHHhhhcchHHHHHHHHHHHhCCccchhhhhHHHHHHhhhhhhhh
Q psy14376 244 GGLCGFAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTF 310 (327)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~v~~~i~~~~~~~e~~~~~~~iG~~lii~g~~l~~~ 310 (327)
-.+|=..||. +....+++..+.++.+.-+.+.+++..+++|.++....+|+++.++|......
T Consensus 74 -m~vGei~NFa---AYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~ 136 (335)
T KOG2922|consen 74 -MIVGEIANFA---AYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVI 136 (335)
T ss_pred -HHHHhHhhHH---HHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEE
Confidence 1233333333 35667777888999999999999999999999999999999999999986654
No 104
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=83.67 E-value=16 Score=33.20 Aligned_cols=24 Identities=25% Similarity=0.384 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhh
Q psy14376 167 ISGTVYGVIASASLALYSIHTKKV 190 (327)
Q Consensus 167 ~~G~~~~l~s~~~~a~~~v~~~~~ 190 (327)
.+|+++..+++++.+.+.+-.||.
T Consensus 6 i~Gii~h~iGg~~~~sfy~P~kkv 29 (344)
T PF06379_consen 6 ILGIIFHAIGGFASGSFYVPFKKV 29 (344)
T ss_pred HHHHHHHHHHHHHhhhhccchhhc
Confidence 469999999999999999988875
No 105
>KOG3912|consensus
Probab=79.71 E-value=4.4 Score=35.57 Aligned_cols=52 Identities=13% Similarity=0.128 Sum_probs=45.2
Q ss_pred HHhcchhhHHhhhcchHHHHHHHHHHHhCCccchhhhhHHHHHHhhhhhhhh
Q psy14376 259 IKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTF 310 (327)
Q Consensus 259 ~~~~~a~~~~~~~~~~~v~~~i~~~~~~~e~~~~~~~iG~~lii~g~~l~~~ 310 (327)
.-.++|+..+++.-...++..+++.-+++.+++..||+|+..+..|.+....
T Consensus 107 L~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~ 158 (372)
T KOG3912|consen 107 LNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGS 158 (372)
T ss_pred HHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeee
Confidence 4566778888888888899999999999999999999999999999986554
No 106
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=77.39 E-value=2.8 Score=30.85 Aligned_cols=30 Identities=7% Similarity=0.020 Sum_probs=24.9
Q ss_pred HHHHHHHHhCCccchhhhhHHHHHHhhhhh
Q psy14376 278 QTVIASYWYNEVKPFLWWVSNWVVLFGSAA 307 (327)
Q Consensus 278 ~~i~~~~~~~e~~~~~~~iG~~lii~g~~l 307 (327)
-+.++++.++|++++.+..|..+++++++.
T Consensus 76 F~~Fsv~~l~E~l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 76 FAPFSVFYLGEPLKWNYLWAFLCILGAVYF 105 (108)
T ss_pred eHHHHHHHhCCCccHHHHHHHHHHHHhhhe
Confidence 345788999999999999999988877643
No 107
>PRK02237 hypothetical protein; Provisional
Probab=74.13 E-value=9.9 Score=28.18 Aligned_cols=44 Identities=9% Similarity=0.069 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhhheec
Q psy14376 114 YYIGRSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWLGVD 157 (327)
Q Consensus 114 ~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~ 157 (327)
++.-.....+...+..+.+-|+|+++.++.|..++++|+.++..
T Consensus 62 YAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~ 105 (109)
T PRK02237 62 YAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMY 105 (109)
T ss_pred HHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHhee
Confidence 34445555667778899999999999999999999999988654
No 108
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=73.99 E-value=1 Score=39.16 Aligned_cols=100 Identities=10% Similarity=0.123 Sum_probs=0.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHH-hccc-ccchhhHHHHHHhhhhhheeccCCcCcccchhHHHHHHHHHHHHHHHHH
Q psy14376 108 NVGVSFYYIGRSLTTVFNVLFSYFL-LAQK-TSFSACVCCGIIVMGFWLGVDQEDLAGSFSISGTVYGVIASASLALYSI 185 (327)
Q Consensus 108 ~~~~~~~~~l~~~~pi~~~i~~~~~-~~e~-~s~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v 185 (327)
-.+-+..+++.+++.+.+.+.-.++ +|+| +-+.-.+|+++.++-..+.. -.+..++.-++|+++.++..+.--.-..
T Consensus 46 d~t~~a~~vl~sfAvvliiIIiIImlF~RrLLCPLGlLCiilimi~lLv~~-L~tLtGQ~LF~Gi~~l~l~~lLaL~vW~ 124 (381)
T PF05297_consen 46 DLTQGALTVLYSFAVVLIIIIIIIMLFKRRLLCPLGLLCIILIMIVLLVSM-LWTLTGQTLFVGIVILFLCCLLALGVWF 124 (381)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHH-HHHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556677777766655554443 4444 45556667766665444422 2333344445677655544332211111
Q ss_pred HHHhhcCCCCCCceehhhhhhHHH
Q psy14376 186 HTKKVLPCVNNEIWLLSYYNNVYS 209 (327)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~l~~ 209 (327)
+ -.++++++.+.|+++.+-.-+.
T Consensus 125 Y-m~lLr~~GAs~WtiLaFcLAF~ 147 (381)
T PF05297_consen 125 Y-MWLLRELGASFWTILAFCLAFL 147 (381)
T ss_dssp ------------------------
T ss_pred H-HHHHHHhhhHHHHHHHHHHHHH
Confidence 2 2366777778888877643333
No 109
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=73.46 E-value=9.7 Score=28.15 Aligned_cols=45 Identities=11% Similarity=0.123 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhhheecc
Q psy14376 114 YYIGRSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWLGVDQ 158 (327)
Q Consensus 114 ~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~ 158 (327)
++.-.....+...+..+.+-|+|+++.++.|..++++|+.++...
T Consensus 60 YAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~ 104 (107)
T PF02694_consen 60 YAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFA 104 (107)
T ss_pred HHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEec
Confidence 334445556777888999999999999999999999999986643
No 110
>KOG2766|consensus
Probab=61.43 E-value=1.4 Score=38.05 Aligned_cols=61 Identities=10% Similarity=0.067 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhcchhhHHhhhcchHHHHHHHHHHHhCCccchhhhhHHHHHHhhhhhhhhc
Q psy14376 251 IGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFV 311 (327)
Q Consensus 251 ~~~~~~~~~~~~~a~~~~~~~~~~~v~~~i~~~~~~~e~~~~~~~iG~~lii~g~~l~~~~ 311 (327)
.||...++.++++-+..+.+..-..+...++++++++.+-.+.++.|.++.++|+......
T Consensus 91 aNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~s 151 (336)
T KOG2766|consen 91 ANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFS 151 (336)
T ss_pred ccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEe
Confidence 4666778889999988899988888888999999999999999999999999999876653
No 111
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=60.52 E-value=19 Score=26.45 Aligned_cols=45 Identities=4% Similarity=-0.051 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhhheeccC
Q psy14376 115 YIGRSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWLGVDQE 159 (327)
Q Consensus 115 ~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~ 159 (327)
+.-.....+...+..+..-|.++++.++.|..++++|+.++..+.
T Consensus 62 AAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~p 106 (109)
T COG1742 62 AAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGP 106 (109)
T ss_pred HHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCC
Confidence 333444566777888888999999999999999999998866543
No 112
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.03 E-value=17 Score=26.37 Aligned_cols=30 Identities=7% Similarity=0.035 Sum_probs=25.2
Q ss_pred HHHHHHHHhCCccchhhhhHHHHHHhhhhh
Q psy14376 278 QTVIASYWYNEVKPFLWWVSNWVVLFGSAA 307 (327)
Q Consensus 278 ~~i~~~~~~~e~~~~~~~iG~~lii~g~~l 307 (327)
-+-+|++.++|++.+.++.|..++..|+++
T Consensus 83 Fv~Fsvfyl~epl~~~~l~a~~~i~gav~f 112 (116)
T COG3169 83 FVPFSVFYLKEPLRWNYLWAFLLILGAVYF 112 (116)
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHHHHHHH
Confidence 345789999999999999998888887764
No 113
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=58.82 E-value=1.5e+02 Score=27.15 Aligned_cols=133 Identities=17% Similarity=0.213 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHhhhccCccccCCCC----CCCChhhHHHHHHHHHHHHHHHHHhcccccccchhHHH-HHHHHHHH
Q psy14376 49 FQCVISAFLCIFLHIFSLFFPNILTFPTG----NPFRLNTLINVLPLSILFMSMISFNNLCLKNVGVSFYY-IGRSLTTV 123 (327)
Q Consensus 49 ~r~~~~~~~l~~~~~~~~~~~~~~~~p~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~l~~~~pi 123 (327)
.|.+++.++......+- ..|+- ...+.+........|++-......+-.+.+|+..+.-+ +...+.-.
T Consensus 40 v~gi~swli~P~~~a~l-------~ip~~~~i~~~~~~~~l~~~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~ 112 (344)
T PF06379_consen 40 VQGIFSWLIVPWLWALL-------AIPDFFSIYSATPASTLFWTFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAV 112 (344)
T ss_pred HHHHHHHHHHHHHHHHH-------hCCcHHHHHHhCChhHHHHHHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHH
Confidence 36667776666654432 22320 11334445555566666655555555677787655433 22333333
Q ss_pred HHHHHHHHHhc-------ccccchhhHHHHHHhhhhhheecc----CC----cCcccch-hHHHHHHHHHHHHHHHHHHH
Q psy14376 124 FNVLFSYFLLA-------QKTSFSACVCCGIIVMGFWLGVDQ----ED----LAGSFSI-SGTVYGVIASASLALYSIHT 187 (327)
Q Consensus 124 ~~~i~~~~~~~-------e~~s~~~~~~~~l~~~Gv~l~~~~----~~----~~~~~~~-~G~~~~l~s~~~~a~~~v~~ 187 (327)
+-.++-.++.+ ++-...-++++++.++|+.+.... |. ...++|. .|++.++.|++..|+.+.-.
T Consensus 113 ~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke~~~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~ 192 (344)
T PF06379_consen 113 FGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKEKELGEEAKEFNFKKGLIIAVLSGVMSACFNFGL 192 (344)
T ss_pred HhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhhhhhccchhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 33344334332 222345678999999999884221 11 1123333 69999999999999988654
Q ss_pred H
Q psy14376 188 K 188 (327)
Q Consensus 188 ~ 188 (327)
+
T Consensus 193 ~ 193 (344)
T PF06379_consen 193 D 193 (344)
T ss_pred H
Confidence 4
No 114
>PRK02237 hypothetical protein; Provisional
Probab=57.45 E-value=17 Score=26.97 Aligned_cols=40 Identities=10% Similarity=0.041 Sum_probs=32.7
Q ss_pred cchHHHHHHHHHHHhCCccchhhhhHHHHHHhhhhhhhhc
Q psy14376 272 TAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFV 311 (327)
Q Consensus 272 ~~~~v~~~i~~~~~~~e~~~~~~~iG~~lii~g~~l~~~~ 311 (327)
-+-.+.+.+.++.+=|++|+...++|..++++|+.+..+.
T Consensus 67 GvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~ 106 (109)
T PRK02237 67 GVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYA 106 (109)
T ss_pred hHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheec
Confidence 3344567778899999999999999999999999776553
No 115
>KOG1442|consensus
Probab=56.69 E-value=36 Score=29.99 Aligned_cols=110 Identities=13% Similarity=0.077 Sum_probs=65.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhccCccccCCCCCCC-ChhhHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHH
Q psy14376 42 APLFITWFQCVISAFLCIFLHIFSLFFPNILTFPTGNPF-RLNTLINVLPLSILFMSMISFNNLCLKNVGVSFYYIGRSL 120 (327)
Q Consensus 42 ~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~ 120 (327)
--+.++++..+.+.++.++...+.+...+...+|+ . +.+.|..+.+.|++......-..+=+|.+++-+..+-...
T Consensus 214 ~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~---l~a~~Fw~~mtLsglfgF~mgyvTg~QIK~TSplThnISgTA 290 (347)
T KOG1442|consen 214 CIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPH---LPAIKFWILMTLSGLFGFAMGYVTGWQIKVTSPLTHNISGTA 290 (347)
T ss_pred eehhhHHHHHHHHHHHHHHHHHHcchHHHHcCccc---chHHHHHHHHHHHHHHHHHhhheeeEEEEecccceeeecHhH
Confidence 34678999999999988888877665444334443 3 3444444444444433333222233555555544444444
Q ss_pred HHHHHHHHHHHHhcccccchhhHHHHHHhhhhhh
Q psy14376 121 TTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWL 154 (327)
Q Consensus 121 ~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l 154 (327)
.-.-=..++..+.+|--+...|-+..+.+.|-..
T Consensus 291 ka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~ 324 (347)
T KOG1442|consen 291 KAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLA 324 (347)
T ss_pred HHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHH
Confidence 4455566788888888887777776666655544
No 116
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=53.82 E-value=18 Score=26.73 Aligned_cols=39 Identities=15% Similarity=0.075 Sum_probs=32.3
Q ss_pred chHHHHHHHHHHHhCCccchhhhhHHHHHHhhhhhhhhc
Q psy14376 273 AKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFV 311 (327)
Q Consensus 273 ~~~v~~~i~~~~~~~e~~~~~~~iG~~lii~g~~l~~~~ 311 (327)
+-.+.+.+.++.+=|++|+...++|..+++.|+....+.
T Consensus 66 vfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~ 104 (107)
T PF02694_consen 66 VFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFA 104 (107)
T ss_pred hHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEec
Confidence 334567778899999999999999999999999876554
No 117
>KOG1582|consensus
Probab=52.92 E-value=97 Score=27.38 Aligned_cols=52 Identities=15% Similarity=0.235 Sum_probs=41.7
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhhheecc
Q psy14376 107 KNVGVSFYYIGRSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWLGVDQ 158 (327)
Q Consensus 107 ~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~ 158 (327)
+.-.+..+..+...---.+.+++++++.+++|.+..-+.++.+.|+.+-..+
T Consensus 282 ~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ys 333 (367)
T KOG1582|consen 282 KLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYS 333 (367)
T ss_pred HHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhccc
Confidence 3346666666666667789999999999999999999999999999994443
No 118
>KOG4831|consensus
Probab=52.45 E-value=17 Score=26.77 Aligned_cols=68 Identities=25% Similarity=0.333 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHhcccccccchhHHHH-HHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhhh
Q psy14376 86 INVLPLSILFMSMISFNNLCLKNVGVSFYYI-GRSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWL 154 (327)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l 154 (327)
...++. ++.-.....+++-+++.|.+.+.- -.+++-.|+.+.+..+..|-..++.+.|..+.++|+.+
T Consensus 54 ~Y~iPF-llNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~L 122 (125)
T KOG4831|consen 54 EYLIPF-LLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWL 122 (125)
T ss_pred HHHHHH-HHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhh
Confidence 344443 333344555556666766665543 35567888999997775566678888999999999865
No 119
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=44.75 E-value=83 Score=25.31 Aligned_cols=91 Identities=12% Similarity=0.107 Sum_probs=49.4
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhhheeccCCcCcccchhHHHHHHHHHHHHHHH
Q psy14376 104 LCLKNVGVSFYYIGRSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWLGVDQEDLAGSFSISGTVYGVIASASLALY 183 (327)
Q Consensus 104 ~~l~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~G~~~~l~s~~~~a~~ 183 (327)
..++.+++..+..+.-.-|+.+.=+ .+.|+.+....+. ..-.-....++.+++.+++.
T Consensus 90 m~v~KtsP~LYr~LGIfLPLITTNC-------------------aVLgvaLln~~~~---~~f~qsv~~gf~a~lGfslv 147 (193)
T COG4657 90 MVVRKTSPTLYRLLGIFLPLITTNC-------------------AVLGVALLNINEG---HNFLQSVVYGFGAALGFSLV 147 (193)
T ss_pred HHHHccCHHHHHHHHHhhhhHhhch-------------------HHHHHHHHHhhhh---hhHHHHHHHHhhhHhhHHHH
Confidence 3455666666666666556554322 3456666443222 22223678889999999998
Q ss_pred HHHHHhhcCCCCC----CceehhhhhhHHHHHHHHHH
Q psy14376 184 SIHTKKVLPCVNN----EIWLLSYYNNVYSSIILLFV 216 (327)
Q Consensus 184 ~v~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~ 216 (327)
.++...+.+|.+. .|.+-..+..+.++++.+.+
T Consensus 148 mvlfA~iRER~~~advP~~frG~~ialitagLmSlaF 184 (193)
T COG4657 148 MVLFAAIRERLALADVPAPFRGAAIALITAGLMSLAF 184 (193)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHH
Confidence 8876555443221 34444444444444444433
No 120
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=44.39 E-value=2.6e+02 Score=25.76 Aligned_cols=44 Identities=14% Similarity=0.101 Sum_probs=24.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHH--hcccccchhhHHHHHHhhhh
Q psy14376 109 VGVSFYYIGRSLTTVFNVLFSYFL--LAQKTSFSACVCCGIIVMGF 152 (327)
Q Consensus 109 ~~~~~~~~l~~~~pi~~~i~~~~~--~~e~~s~~~~~~~~l~~~Gv 152 (327)
.+.+......+...+...+...+. +-||+++++.+.....+.++
T Consensus 52 ~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~ 97 (394)
T PRK10213 52 ISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTL 97 (394)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHH
Confidence 344555555555555555544443 34888888875554444444
No 121
>KOG1443|consensus
Probab=44.26 E-value=87 Score=28.15 Aligned_cols=55 Identities=18% Similarity=0.193 Sum_probs=44.3
Q ss_pred HhcccccccchhHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhhhe
Q psy14376 101 FNNLCLKNVGVSFYYIGRSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWLG 155 (327)
Q Consensus 101 ~~~~~l~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l~ 155 (327)
..+.-+.-++.-+.++..-..-+.+.+++.++.+++++...|+|..++..|+..-
T Consensus 259 sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 259 SEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 3333455666666666677778889999999999999999999999999999884
No 122
>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed. Currently no function for this family is known.
Probab=41.51 E-value=2.1e+02 Score=23.96 Aligned_cols=24 Identities=17% Similarity=0.350 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhh
Q psy14376 42 APLFITWFQCVISAFLCIFLHIFS 65 (327)
Q Consensus 42 ~p~~l~~~r~~~~~~~l~~~~~~~ 65 (327)
++......|..++..++..-.+..
T Consensus 64 ~~~~~~~~~l~lGv~ll~~a~~~~ 87 (214)
T PF11139_consen 64 PSPVVGWLQLVLGVLLLLLAVRVW 87 (214)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHh
Confidence 456678888888877766654433
No 123
>PF04018 DUF368: Domain of unknown function (DUF368); InterPro: IPR007163 This is a predicted transmembrane family of unknown function. Proteins usually have between 6 and 9 predicted transmembrane segments.
Probab=39.94 E-value=2.4e+02 Score=24.70 Aligned_cols=52 Identities=19% Similarity=-0.017 Sum_probs=23.8
Q ss_pred cccccchhhHHHHHHhhhhhheeccCCc-CcccchhHHHHHHHHHHHHHHHHH
Q psy14376 134 AQKTSFSACVCCGIIVMGFWLGVDQEDL-AGSFSISGTVYGVIASASLALYSI 185 (327)
Q Consensus 134 ~e~~s~~~~~~~~l~~~Gv~l~~~~~~~-~~~~~~~G~~~~l~s~~~~a~~~v 185 (327)
.+|.+++++...+++++-+......... +...+.....+.+.++..-++.++
T Consensus 105 ~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~lf~~G~ia~~AMI 157 (257)
T PF04018_consen 105 IKKFSPKSIIFFLLGAIIALLLSFLSSATQSSLSNPSYLYLFLAGAIAACAMI 157 (257)
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHccccchhccCcchHHHHHHHHHHHHHHHh
Confidence 3556666665555555444432221111 111122234455566666666554
No 124
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype. Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.
Probab=39.77 E-value=3.3e+02 Score=25.65 Aligned_cols=60 Identities=12% Similarity=0.168 Sum_probs=25.6
Q ss_pred HHHHHHHHhcccccchhhHHHHHHhhhhhheeccCCcCcccchhHHHHHHHHHHHHHHHHHHHHh
Q psy14376 125 NVLFSYFLLAQKTSFSACVCCGIIVMGFWLGVDQEDLAGSFSISGTVYGVIASASLALYSIHTKK 189 (327)
Q Consensus 125 ~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~~~ 189 (327)
.++.++.. ++|++......- .++|.+-++.... .-..+-..+.++++++.+-....+.||
T Consensus 257 ~~~~~~~~-~gk~~~~~~~nG--~LAGLVaITa~~~--~v~p~~A~iiG~iag~v~~~~~~~~~~ 316 (404)
T TIGR03644 257 ALLLTKLL-FGKADLTMVLNG--ALAGLVAITAEPL--TPSPLAATLIGAVGGVIVVFSIVLLDK 316 (404)
T ss_pred HHHHHHHH-cCCCCHHHHHHH--HHhhhhhhccccC--CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444333 355655543222 3344444332211 122344666666655544443334454
No 125
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=38.33 E-value=2.5e+02 Score=23.84 Aligned_cols=17 Identities=18% Similarity=0.229 Sum_probs=12.3
Q ss_pred hhhhHHHHHHhhhhhhh
Q psy14376 293 LWWVSNWVVLFGSAAYT 309 (327)
Q Consensus 293 ~~~iG~~lii~g~~l~~ 309 (327)
.+.+|..+++.|.....
T Consensus 176 ~N~~gl~~~~fg~~V~~ 192 (214)
T cd08764 176 GNFIGIVLVIFGGLVVY 192 (214)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46688888888876544
No 126
>PF11118 DUF2627: Protein of unknown function (DUF2627); InterPro: IPR020138 This entry represents uncharacterised membrane proteins with no known function.
Probab=38.22 E-value=1.4e+02 Score=20.75 Aligned_cols=50 Identities=16% Similarity=0.270 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHH
Q psy14376 9 RYVKITLAVSLYWLVSIITVFVNKALLSELKLDAPLFITWFQCVISAFLCIF 60 (327)
Q Consensus 9 ~~~~~~~~~~~~~~~s~~~~~~~k~~l~~~~~~~p~~l~~~r~~~~~~~l~~ 60 (327)
|.+.++++++=-..+..+...|--.++... ++|....|.|++.+.++..+
T Consensus 3 R~iAlliLvIPg~~a~yGiklMRD~~F~~~--~~p~~~lwlqfl~G~~lf~~ 52 (77)
T PF11118_consen 3 RFIALLILVIPGILAAYGIKLMRDTVFGIL--FSPFPSLWLQFLAGLLLFAI 52 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCchhHHHHHHHHHHHHHH
Confidence 444444444444445555544444445432 25666779998888776554
No 127
>PRK11403 hypothetical protein; Provisional
Probab=37.53 E-value=1.7e+02 Score=21.83 Aligned_cols=76 Identities=17% Similarity=0.136 Sum_probs=39.1
Q ss_pred hhHHHHHHhhhhhheeccCCcCcccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceehhhhhhHHHHHHHHHHHHH
Q psy14376 141 ACVCCGIIVMGFWLGVDQEDLAGSFSISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGL 219 (327)
Q Consensus 141 ~~~~~~l~~~Gv~l~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 219 (327)
.|...+.+..+-.+... +.+...|-.|..+.++---.++... ++|...++...+.+.-..|.....++.++.....
T Consensus 8 sw~aL~~G~~~YliGLW--nA~m~LneKGYyf~vL~~GlF~~vs-~qk~vrd~~~~~~y~~~cw~~~llsi~LL~vGl~ 83 (113)
T PRK11403 8 AKLLFVVGALVYLVGLW--ISCPLLSGKGYFLGVLMTATFGNYA-YLRAEKLGQLDDFFIHICQLVALITIGLLFIGVL 83 (113)
T ss_pred HHHHHHHHHHHHHHHhc--ccccccCccchhHHHHHHHHHHHHH-HHHHHhccccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555555443 3335566678887777666666665 3555444322234444444444444444444444
No 128
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix. It has been described as a channel that spans the membrane 11 times [].; PDB: 3B9Z_A 3B9Y_A 3B9W_A 3BHS_A 2B2H_A 2B2J_A 2B2F_A 2B2I_A 2NPG_A 2NUU_E ....
Probab=37.09 E-value=3.5e+02 Score=25.26 Aligned_cols=22 Identities=5% Similarity=-0.209 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHhhhccCc
Q psy14376 49 FQCVISAFLCIFLHIFSLFFPN 70 (327)
Q Consensus 49 ~r~~~~~~~l~~~~~~~~~~~~ 70 (327)
.|...+...+.....+++|.+|
T Consensus 156 VH~~gG~~gL~~a~~lg~R~~~ 177 (399)
T PF00909_consen 156 VHLFGGVFGLAAAIVLGPRRGR 177 (399)
T ss_dssp THHHHHHHHHHHHHHH--CTTT
T ss_pred eehhhhHHHHhhheeeCCCCCc
Confidence 5666666666666666665544
No 129
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.74 E-value=70 Score=23.30 Aligned_cols=30 Identities=20% Similarity=0.226 Sum_probs=24.6
Q ss_pred HHHHHHHhcccccchhhHHHHHHhhhhhhe
Q psy14376 126 VLFSYFLLAQKTSFSACVCCGIIVMGFWLG 155 (327)
Q Consensus 126 ~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l~ 155 (327)
..++.+++||++++..+.+.++...|+..+
T Consensus 84 v~Fsvfyl~epl~~~~l~a~~~i~gav~fi 113 (116)
T COG3169 84 VPFSVFYLKEPLRWNYLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHh
Confidence 357888999999999999988887777654
No 130
>COG4682 Predicted membrane protein [Function unknown]
Probab=34.32 E-value=2.1e+02 Score=21.78 Aligned_cols=64 Identities=19% Similarity=0.166 Sum_probs=34.1
Q ss_pred hhHHHHHHhhhhhh-eeccCCcCcccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceehhhhh
Q psy14376 141 ACVCCGIIVMGFWL-GVDQEDLAGSFSISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYN 205 (327)
Q Consensus 141 ~~~~~~l~~~Gv~l-~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~ 205 (327)
..++-...+.|+++ ...-++.+.+.|-.|..++.+-...++.+. .+|...+|.+..+..--++.
T Consensus 13 ~~va~~~lv~G~vvyLiGLWna~~qLnEKGYyfaVlvl~~F~a~s-~Qk~vrdk~e~~~i~~~~~~ 77 (128)
T COG4682 13 TIVAWLALVVGAVVYLVGLWNACMQLNEKGYYFAVLVLGLFGAYS-YQKTVRDKLEDIPITSIYYH 77 (128)
T ss_pred HHHHHHHHHHHHHHHHHhhcccchhhccCceeehhHHHHhhHHHH-HHHHHHHhccCCcchHHHHH
Confidence 44555666667665 222233335566678777766555666555 44544455443344444443
No 131
>KOG1583|consensus
Probab=32.55 E-value=80 Score=27.95 Aligned_cols=69 Identities=14% Similarity=0.208 Sum_probs=45.1
Q ss_pred HHHHHHHH-HHHHHhcccccccc-------hhHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhhheec
Q psy14376 89 LPLSILFM-SMISFNNLCLKNVG-------VSFYYIGRSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWLGVD 157 (327)
Q Consensus 89 ~~~~~~~~-~~~~~~~~~l~~~~-------~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~ 157 (327)
++....|. .+...++.+.+.+. +-+.++....-=.+..+++.+.+++++++..|+|..+.+.|..+...
T Consensus 238 vP~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~ 314 (330)
T KOG1583|consen 238 VPSMWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFAN 314 (330)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34444443 44445555554432 22233444455667788888899999999999999999999988544
No 132
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=29.86 E-value=2.2e+02 Score=20.62 Aligned_cols=24 Identities=17% Similarity=0.113 Sum_probs=16.2
Q ss_pred HHhcccccchhhHHHHHHhhhhhh
Q psy14376 131 FLLAQKTSFSACVCCGIIVMGFWL 154 (327)
Q Consensus 131 ~~~~e~~s~~~~~~~~l~~~Gv~l 154 (327)
.+.|-+.-+.+|+-.+..++|+++
T Consensus 24 ~IkkT~~v~~K~iPlIs~viGilL 47 (93)
T PF06946_consen 24 AIKKTKVVPNKWIPLISVVIGILL 47 (93)
T ss_pred HHHHhccCCcchhhHHHHHHHHHH
Confidence 344544446778777777888877
No 133
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=27.98 E-value=5.5e+02 Score=24.67 Aligned_cols=24 Identities=8% Similarity=0.027 Sum_probs=19.6
Q ss_pred cchhhhhHHHHHHhhhhhhhhccc
Q psy14376 290 KPFLWWVSNWVVLFGSAAYTFVKQ 313 (327)
Q Consensus 290 ~~~~~~iG~~lii~g~~l~~~~~~ 313 (327)
++..|+++..++++|++++.+.++
T Consensus 254 l~~~Q~lSl~~il~gl~~~~~~~~ 277 (460)
T PRK13108 254 IRINSFTSTFVFIGAVVYIILAPK 277 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhc
Confidence 688999999999999887765443
No 134
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=27.47 E-value=65 Score=20.09 Aligned_cols=23 Identities=13% Similarity=0.199 Sum_probs=15.4
Q ss_pred HHHHHhhhhhhhhccchhHHHhh
Q psy14376 298 NWVVLFGSAAYTFVKQREMEAQY 320 (327)
Q Consensus 298 ~~lii~g~~l~~~~~~~~~~~~~ 320 (327)
+.++.+|++++.+.+.++++-++
T Consensus 19 ~~~~Figiv~wa~~p~~k~~f~e 41 (48)
T cd01324 19 LALFFLGVVVWAFRPGRKKAFDE 41 (48)
T ss_pred HHHHHHHHHHHHhCCCcchhHHH
Confidence 45778888888887655544333
No 135
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=25.83 E-value=46 Score=20.23 Aligned_cols=11 Identities=36% Similarity=0.585 Sum_probs=5.2
Q ss_pred hhhhhhhhccc
Q psy14376 303 FGSAAYTFVKQ 313 (327)
Q Consensus 303 ~g~~l~~~~~~ 313 (327)
.|...|...++
T Consensus 21 iGl~IyQkikq 31 (49)
T PF11044_consen 21 IGLSIYQKIKQ 31 (49)
T ss_pred HHHHHHHHHHH
Confidence 44455554443
No 136
>PRK12437 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=25.01 E-value=36 Score=29.95 Aligned_cols=23 Identities=9% Similarity=0.075 Sum_probs=18.5
Q ss_pred cchhhhhHHHHHHhhhhhhhhcc
Q psy14376 290 KPFLWWVSNWVVLFGSAAYTFVK 312 (327)
Q Consensus 290 ~~~~~~iG~~lii~g~~l~~~~~ 312 (327)
+|..|+++..+++.|+.+..+.+
T Consensus 235 ls~~Q~~sl~~i~~g~~~~~~~~ 257 (269)
T PRK12437 235 LRIAQVISIPLIIIGIILIIYRR 257 (269)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999987765433
No 137
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=23.87 E-value=69 Score=19.87 Aligned_cols=19 Identities=11% Similarity=0.350 Sum_probs=12.0
Q ss_pred HHHHHhhhhhhhhccchhH
Q psy14376 298 NWVVLFGSAAYTFVKQREM 316 (327)
Q Consensus 298 ~~lii~g~~l~~~~~~~~~ 316 (327)
+.++++|++++.+.+++++
T Consensus 18 ~~~~F~gi~~w~~~~~~k~ 36 (49)
T PF05545_consen 18 FFVFFIGIVIWAYRPRNKK 36 (49)
T ss_pred HHHHHHHHHHHHHcccchh
Confidence 3456677777777655443
No 138
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=23.46 E-value=64 Score=22.86 Aligned_cols=23 Identities=17% Similarity=0.014 Sum_probs=18.3
Q ss_pred ccchhhhhHHHHHHhhhhhhhhc
Q psy14376 289 VKPFLWWVSNWVVLFGSAAYTFV 311 (327)
Q Consensus 289 ~~~~~~~iG~~lii~g~~l~~~~ 311 (327)
..++..++|..+++.|..+|..+
T Consensus 4 ~~~~~~iLgi~l~~~~~~Ly~lr 26 (84)
T PF07444_consen 4 GFGPSYILGIILILGGLALYFLR 26 (84)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHH
Confidence 45788889999999888888653
No 139
>COG1971 Predicted membrane protein [Function unknown]
Probab=23.01 E-value=93 Score=25.80 Aligned_cols=40 Identities=8% Similarity=0.209 Sum_probs=22.9
Q ss_pred HHhhhcchHHHHHHHHHHHhCCccchhhhhHHH-HHHhhhh
Q psy14376 267 HNISGTAKACAQTVIASYWYNEVKPFLWWVSNW-VVLFGSA 306 (327)
Q Consensus 267 ~~~~~~~~~v~~~i~~~~~~~e~~~~~~~iG~~-lii~g~~ 306 (327)
.+..+...|+.....+.++=+-.-.+-+|+|.+ +++.|..
T Consensus 43 fG~f~~i~pliG~~~g~~~s~~i~~~~~wigf~lL~~lG~~ 83 (190)
T COG1971 43 FGVFQAIMPLIGWFIGKFLSTFIAEWAHWIGFVLLIILGLK 83 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455566666666655444444567777655 4555654
No 140
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=22.11 E-value=2e+02 Score=22.68 Aligned_cols=38 Identities=13% Similarity=0.074 Sum_probs=23.3
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhcccccchhhHHH
Q psy14376 107 KNVGVSFYYIGRSLTTVFNVLFSYFLLAQKTSFSACVCC 145 (327)
Q Consensus 107 ~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~ 145 (327)
.-=+.-.++.+.+..|++.++.+.+. -+++...+...+
T Consensus 70 ~EkslL~sA~LvYi~PL~~l~v~~~L-a~~L~~~e~~~~ 107 (150)
T COG3086 70 EEKSLLKSALLVYIFPLVGLFLGAIL-AQYLFFSELIVI 107 (150)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhHHHH
Confidence 33455567778888899888888665 233333333333
No 141
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=22.10 E-value=6.4e+02 Score=23.99 Aligned_cols=21 Identities=10% Similarity=0.020 Sum_probs=14.7
Q ss_pred hhhhHHHHHHhhhhhhhhccc
Q psy14376 293 LWWVSNWVVLFGSAAYTFVKQ 313 (327)
Q Consensus 293 ~~~iG~~lii~g~~l~~~~~~ 313 (327)
....|..+..+|..+|.+.++
T Consensus 417 ~~~~~~~~~~~g~~~y~~~~~ 437 (473)
T TIGR00905 417 YLLLGFILYAPGIIFYGRARK 437 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455688888888877776443
No 142
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=21.50 E-value=3.5e+02 Score=20.12 Aligned_cols=58 Identities=16% Similarity=0.157 Sum_probs=34.9
Q ss_pred HHHHHhcccccccchhHHHHHHHH-HHHHHHHHHHHHhcccccchhhHHHHHHhhhhhh
Q psy14376 97 SMISFNNLCLKNVGVSFYYIGRSL-TTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWL 154 (327)
Q Consensus 97 ~~~~~~~~~l~~~~~~~~~~l~~~-~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l 154 (327)
...-.+-.|.+.-+.+.-.++.=. +-..-+.++.+++||++++....+-++.+.++..
T Consensus 47 l~VPANRiG~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 47 LQVPANRIGYQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYF 105 (108)
T ss_pred HhCcchhhhccccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhe
Confidence 333344444444444444444222 2233456778899999999999988877766544
No 143
>PRK10655 potE putrescine transporter; Provisional
Probab=21.28 E-value=2.8e+02 Score=26.01 Aligned_cols=28 Identities=14% Similarity=0.139 Sum_probs=18.3
Q ss_pred hhhhHHHHHHhhhhhhhhccchhHHHhh
Q psy14376 293 LWWVSNWVVLFGSAAYTFVKQREMEAQY 320 (327)
Q Consensus 293 ~~~iG~~lii~g~~l~~~~~~~~~~~~~ 320 (327)
....|...+++|..+|...+++.++|+|
T Consensus 409 ~~~~~~~~~~~g~~~y~~~~~~~~~~~~ 436 (438)
T PRK10655 409 AMLYGSIVTFLGWTLYGLISPRFELKNK 436 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 3456788888888888665555554444
No 144
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=21.25 E-value=1.8e+02 Score=23.01 Aligned_cols=11 Identities=9% Similarity=0.250 Sum_probs=5.7
Q ss_pred HHHHHhCCccc
Q psy14376 281 IASYWYNEVKP 291 (327)
Q Consensus 281 ~~~~~~~e~~~ 291 (327)
...++++|...
T Consensus 96 a~~L~~~e~~~ 106 (150)
T COG3086 96 AQYLFFSELIV 106 (150)
T ss_pred HHHHhhhhHHH
Confidence 34555666543
No 145
>PF11295 DUF3096: Protein of unknown function (DUF3096); InterPro: IPR021446 This entry is represented by the archaeal Thermoproteus tenax spherical virus 1, Orf18. The characteristics of the protein distribution suggest prophage matches and lateral genetic transfer in addition to the phage matches.
Probab=20.11 E-value=98 Score=18.34 Aligned_cols=31 Identities=6% Similarity=0.081 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhCCccchhhhhHHHHHHhhhh
Q psy14376 276 CAQTVIASYWYNEVKPFLWWVSNWVVLFGSA 306 (327)
Q Consensus 276 v~~~i~~~~~~~e~~~~~~~iG~~lii~g~~ 306 (327)
+.+.+.|++++=-|--.+.++|.-+++.|+.
T Consensus 2 i~aliaGiLiLi~PrllnyiVaiyLI~~G~l 32 (39)
T PF11295_consen 2 ILALIAGILILIMPRLLNYIVAIYLIVIGLL 32 (39)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666655555666777777777765
Done!