Query psy14376
Match_columns 327
No_of_seqs 128 out of 1332
Neff 9.5
Searched_HMMs 29240
Date Fri Aug 16 18:16:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14376.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14376hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.4 7.1E-07 2.4E-11 66.4 7.8 70 89-158 34-104 (110)
2 2i68_A Protein EMRE; transmemb 98.4 6.8E-07 2.3E-11 69.0 6.3 59 254-312 46-105 (137)
3 2i68_A Protein EMRE; transmemb 98.2 9.5E-07 3.2E-11 68.2 5.0 69 89-157 34-103 (137)
4 3b5d_A Multidrug transporter E 97.9 5.2E-05 1.8E-09 56.2 8.5 57 255-311 47-104 (110)
5 3l1l_A Arginine/agmatine antip 44.3 1.4E+02 0.0047 26.6 10.0 23 293-315 409-431 (445)
6 2rdd_B UPF0092 membrane protei 19.9 92 0.0031 17.2 2.6 14 307-320 18-31 (37)
7 4dve_A Biotin transporter BIOY 15.8 4.2E+02 0.014 21.0 8.6 96 82-182 14-114 (198)
8 3rko_J NADH-quinone oxidoreduc 11.5 5.5E+02 0.019 20.0 8.2 22 280-301 128-149 (184)
9 2hac_A T-cell surface glycopro 10.9 2.3E+02 0.0078 15.3 2.5 18 123-140 14-31 (33)
10 3zux_A Transporter, ASBTNM; tr 9.4 8.3E+02 0.028 20.8 9.0 136 185-325 183-324 (332)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.43 E-value=7.1e-07 Score=66.42 Aligned_cols=70 Identities=14% Similarity=0.118 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHhcccccccchhHHHHH-HHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhhheecc
Q psy14376 89 LPLSILFMSMISFNNLCLKNVGVSFYYIG-RSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWLGVDQ 158 (327)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l-~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~ 158 (327)
....+++.....+...++++.|.+.+..+ .++.|+++.+.+++++||++++.+++|+.+.+.|+++....
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 34445567888889999999999999888 89999999999999999999999999999999999986543
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.35 E-value=6.8e-07 Score=68.97 Aligned_cols=59 Identities=2% Similarity=-0.028 Sum_probs=40.6
Q ss_pred HHHHHHHhcchhhHHhh-hcchHHHHHHHHHHHhCCccchhhhhHHHHHHhhhhhhhhcc
Q psy14376 254 VTTLQIKITSPLTHNIS-GTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFVK 312 (327)
Q Consensus 254 ~~~~~~~~~~a~~~~~~-~~~~~v~~~i~~~~~~~e~~~~~~~iG~~lii~g~~l~~~~~ 312 (327)
...+.+++.++.....+ ..+.|+.++++|++++||++++.+++|+.+++.|+++.+..+
T Consensus 46 l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 46 LLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 34567888888866666 899999999999999999999999999999999999887643
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.25 E-value=9.5e-07 Score=68.15 Aligned_cols=69 Identities=14% Similarity=0.127 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHhcccccccchhHHHHH-HHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhhheec
Q psy14376 89 LPLSILFMSMISFNNLCLKNVGVSFYYIG-RSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWLGVD 157 (327)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l-~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~ 157 (327)
+...+++.....+++.++++.|++.+..+ .++.|++++++++++++|++++.+++|+.+.++|+.+...
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL 103 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 34445577888999999999999988888 8999999999999999999999999999999999998544
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.91 E-value=5.2e-05 Score=56.19 Aligned_cols=57 Identities=2% Similarity=-0.040 Sum_probs=49.2
Q ss_pred HHHHHHhcchhhHHhh-hcchHHHHHHHHHHHhCCccchhhhhHHHHHHhhhhhhhhc
Q psy14376 255 TTLQIKITSPLTHNIS-GTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFV 311 (327)
Q Consensus 255 ~~~~~~~~~a~~~~~~-~~~~~v~~~i~~~~~~~e~~~~~~~iG~~lii~g~~l~~~~ 311 (327)
..+..|+.+......+ ..+.|+.+.+.|++++||++|+.+++|..+++.|++.....
T Consensus 47 ~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 47 LAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3457888888866555 78999999999999999999999999999999999987653
No 5
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=44.33 E-value=1.4e+02 Score=26.55 Aligned_cols=23 Identities=17% Similarity=-0.003 Sum_probs=15.2
Q ss_pred hhhhHHHHHHhhhhhhhhccchh
Q psy14376 293 LWWVSNWVVLFGSAAYTFVKQRE 315 (327)
Q Consensus 293 ~~~iG~~lii~g~~l~~~~~~~~ 315 (327)
..+.|...++.|..+|.+.++++
T Consensus 409 ~~~~~~~~~~~g~~~y~~~~~~~ 431 (445)
T 3l1l_A 409 EVMWSFVTLMVITAMYALNYNRL 431 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Confidence 34557778888888777654433
No 6
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=19.88 E-value=92 Score=17.25 Aligned_cols=14 Identities=7% Similarity=-0.021 Sum_probs=5.7
Q ss_pred hhhhccchhHHHhh
Q psy14376 307 AYTFVKQREMEAQY 320 (327)
Q Consensus 307 l~~~~~~~~~~~~~ 320 (327)
....++++++++++
T Consensus 18 Fl~iRPQ~Kr~K~~ 31 (37)
T 2rdd_B 18 FMILRPQQKRTKEH 31 (37)
T ss_dssp HHTHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHH
Confidence 33444444444433
No 7
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=15.81 E-value=4.2e+02 Score=20.96 Aligned_cols=96 Identities=10% Similarity=-0.018 Sum_probs=53.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHhccc---ccccchhHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhhheecc
Q psy14376 82 LNTLINVLPLSILFMSMISFNNLC---LKNVGVSFYYIGRSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWLGVDQ 158 (327)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~ 158 (327)
.++.|++...++.......+...+ +-..|++. ..+...+++.+.++-.++=......-++++.+|+=+...+
T Consensus 14 ~~k~r~l~~~alfaAliavla~i~~Ipip~~pVPi-----TlQtl~V~LaG~~LG~r~G~lsv~lYlllG~~GlPVFagg 88 (198)
T 4dve_A 14 NQKVKTLTYSAFMTAFIIILGFLPGIPIGFIPVPI-----ILQNMGIMMAGGLLGPKYGTISVGAFLALALIGLPVLTGG 88 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCCBCCSSSSCCB-----CSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCBTTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcCc-----cHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHcCccccCC
Confidence 445777877777666555555432 33333332 2456677777766655555556667778888888776544
Q ss_pred CCcCc--ccchhHHHHHHHHHHHHHH
Q psy14376 159 EDLAG--SFSISGTVYGVIASASLAL 182 (327)
Q Consensus 159 ~~~~~--~~~~~G~~~~l~s~~~~a~ 182 (327)
...-. ....-|.+++..-+.....
T Consensus 89 ~gG~~~l~gPTgGYLiGF~~aA~v~G 114 (198)
T 4dve_A 89 NGGAASFLGPSGGYRIAWLFTPFLIG 114 (198)
T ss_dssp BCCSGGGGSTTHHHHHHHHHHHHHHH
T ss_pred CCchhHHhcchhHHHHHHHHHHHHHH
Confidence 22111 1123477777654443333
No 8
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=11.46 E-value=5.5e+02 Score=20.01 Aligned_cols=22 Identities=5% Similarity=-0.047 Sum_probs=18.3
Q ss_pred HHHHHHhCCccchhhhhHHHHH
Q psy14376 280 VIASYWYNEVKPFLWWVSNWVV 301 (327)
Q Consensus 280 i~~~~~~~e~~~~~~~iG~~li 301 (327)
-+|..++++-.-+-+..|..+.
T Consensus 128 ~iG~~Lft~Y~lpFElaSvlLL 149 (184)
T 3rko_J 128 AVGITLFGPYVLAVELASMLLL 149 (184)
T ss_dssp HHHHHHTTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999889999997764
No 9
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=10.90 E-value=2.3e+02 Score=15.33 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhcccccch
Q psy14376 123 VFNVLFSYFLLAQKTSFS 140 (327)
Q Consensus 123 i~~~i~~~~~~~e~~s~~ 140 (327)
+.-.++..++++||+++.
T Consensus 14 iYgii~T~Ly~R~K~~~~ 31 (33)
T 2hac_A 14 IYGVILTALFLRVKFSRS 31 (33)
T ss_dssp HHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 344555666777777653
No 10
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=9.44 E-value=8.3e+02 Score=20.76 Aligned_cols=136 Identities=10% Similarity=0.060 Sum_probs=0.0
Q ss_pred HHHHhhcCCCCCCceehhhhhhHHHHHHHHHHHHHcCcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHH--HHhc
Q psy14376 185 IHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGGLCGFAIGYVTTLQ--IKIT 262 (327)
Q Consensus 185 v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 262 (327)
...|+..++.........-.....+........... +.+.. ...........+....+++...|..-+. ..+.
T Consensus 183 ~l~r~~~~~~~~~~~~~l~~~s~~~illiv~~~~~~-~~~~~----~~~~~~v~~~~~l~~~~~~~lg~~~~r~~~~~~~ 257 (332)
T 3zux_A 183 LIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGA-SKGKI----MESGLLIFAVVVLHNGIGYLLGFFAAKWTGLPYD 257 (332)
T ss_dssp HHHHHHHGGGGHHHHTTHHHHHHHHHHHHHHHHHHH-THHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHh-hhHHH----HhccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHh
Q ss_pred chhhHHh-hhcchHHHHHHHHHHHhCCccc---hhhhhHHHHHHhhhhhhhhccchhHHHhhhcccC
Q psy14376 263 SPLTHNI-SGTAKACAQTVIASYWYNEVKP---FLWWVSNWVVLFGSAAYTFVKQREMEAQYNNKYS 325 (327)
Q Consensus 263 ~a~~~~~-~~~~~~v~~~i~~~~~~~e~~~---~~~~iG~~lii~g~~l~~~~~~~~~~~~~~~~~~ 325 (327)
+..+.++ .+.=+...++.++...|++++. +..+-+..-.+.|..+..+.+++++++++..++.
T Consensus 258 ~~~ti~~e~G~qNs~lai~lA~~~F~~~p~~alp~~iy~~~q~i~~~~la~~~~~~~~~~~~~~~~~ 324 (332)
T 3zux_A 258 AQKALTIEVGMQNSGLAAALAAAHFAAAPVVAVPGALFSVWHNISGSLLATYWAAKAGKHKKPLDRA 324 (332)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HhhhhhhhhhhccHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHcCccccCCchhhc
Done!