Query psy14376
Match_columns 327
No_of_seqs 128 out of 1332
Neff 9.5
Searched_HMMs 13730
Date Fri Aug 16 18:16:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14376.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/14376hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 35.0 21 0.0016 16.6 2.8 17 168-184 3-19 (27)
2 d1u7ga_ f.44.1.1 (A:) Ammonium 6.5 5.8E+02 0.042 20.3 22.9 77 128-211 245-322 (383)
3 d1iwga8 f.35.1.1 (A:513-566,A: 6.0 4.7E+02 0.034 18.7 11.2 28 276-303 95-122 (222)
4 d1iwga7 f.35.1.1 (A:7-37,A:331 5.6 4.7E+02 0.034 18.3 6.0 36 271-306 72-107 (199)
5 d2axtt1 f.23.34.1 (T:1-30) Pho 2.1 4.4E+02 0.032 12.1 2.9 19 204-222 6-25 (30)
6 d3ehbb2 f.17.2.1 (B:1-107) Bac 2.0 8.4E+02 0.061 15.0 3.5 7 273-279 77-83 (107)
7 d2r6gf1 e.70.1.1 (F:13-260) Ma 2.0 1.2E+03 0.088 16.9 6.7 32 121-152 34-65 (248)
8 d1uptb_ a.193.1.1 (B:) Golgi a 1.9 4.2E+02 0.03 14.9 1.2 28 270-300 5-32 (58)
9 d1y5ic1 f.21.3.1 (C:1-225) Res 1.9 2.8E+02 0.021 20.2 0.6 31 296-326 96-126 (225)
10 d2axtl1 f.23.31.1 (L:1-37) Pho 1.8 6E+02 0.044 12.5 2.7 16 168-183 19-34 (37)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=34.96 E-value=21 Score=16.64 Aligned_cols=17 Identities=24% Similarity=0.415 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHH
Q psy14376 168 SGTVYGVIASASLALYS 184 (327)
Q Consensus 168 ~G~~~~l~s~~~~a~~~ 184 (327)
+|.+..-+++++||.|.
T Consensus 3 lgli~~tl~glf~aayq 19 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQ 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHH
Confidence 58888889999999986
No 2
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=6.53 E-value=5.8e+02 Score=20.30 Aligned_cols=77 Identities=14% Similarity=0.039 Sum_probs=32.6
Q ss_pred HHHHHhcccccchhhHHHHHHhhhhhheeccCCcCcccchhHHHHHHHHH-HHHHHHHHHHHhhcCCCCCCceehhhhhh
Q psy14376 128 FSYFLLAQKTSFSACVCCGIIVMGFWLGVDQEDLAGSFSISGTVYGVIAS-ASLALYSIHTKKVLPCVNNEIWLLSYYNN 206 (327)
Q Consensus 128 ~~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~G~~~~l~s~-~~~a~~~v~~~~~~~~~~~~~~~~~~~~~ 206 (327)
+...+.++|.+......- .+.|.+-++...+ .-..+...+.+.+++ +++-.+..+.+|. | .| |+.....-..
T Consensus 245 ~~~~~~~~k~~~~~~~nG--~LaGLVaita~~~--~v~p~~A~~iG~i~g~i~~~~~~~l~~~~-~-iD-D~~~~~~vHg 317 (383)
T d1u7ga_ 245 FGEWALRGLPSLLGACSG--AIAGLVGVTPACG--YIGVGGALIIGVVAGLAGLWGVTMLKRLL-R-VD-DPCDVFGVHG 317 (383)
T ss_dssp HHHHHHHSSCCHHHHHHH--HHHHHHHHTTTTT--TSCHHHHHHHHHHHHHHHHHHHHHHHHHH-C-SC-CGGGHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHH--hhhhhhhcccCcc--ccchhhHHHHHhhccHHHHHHHHHHHhhc-c-cc-cccceEeehh
Confidence 333345666766554332 2334444332221 112233455565544 4444444343343 3 22 4555544444
Q ss_pred HHHHH
Q psy14376 207 VYSSI 211 (327)
Q Consensus 207 l~~~~ 211 (327)
.-|..
T Consensus 318 ~~Gi~ 322 (383)
T d1u7ga_ 318 VCGIV 322 (383)
T ss_dssp HHHHH
T ss_pred hhHHH
Confidence 33333
No 3
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=6.01 E-value=4.7e+02 Score=18.74 Aligned_cols=28 Identities=7% Similarity=0.040 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhCCccchhhhhHHHHHHh
Q psy14376 276 CAQTVIASYWYNEVKPFLWWVSNWVVLF 303 (327)
Q Consensus 276 v~~~i~~~~~~~e~~~~~~~iG~~lii~ 303 (327)
+...+.+..+.+.+++....+|..+.+.
T Consensus 95 ~~~~~~~l~~~g~~~~~~~~~g~i~l~G 122 (222)
T d1iwga8 95 VIGALLAATFRGLTNDVYFQVGLLTTIG 122 (222)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchhhhhcccccchhh
Confidence 4456677788899999999888666444
No 4
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=5.65 E-value=4.7e+02 Score=18.35 Aligned_cols=36 Identities=6% Similarity=-0.245 Sum_probs=22.8
Q ss_pred hcchHHHHHHHHHHHhCCccchhhhhHHHHHHhhhh
Q psy14376 271 GTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSA 306 (327)
Q Consensus 271 ~~~~~v~~~i~~~~~~~e~~~~~~~iG~~lii~g~~ 306 (327)
...-.+...+....++|.+++.....+..+.++...
T Consensus 72 ~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~igi~v 107 (199)
T d1iwga7 72 AVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLV 107 (199)
T ss_dssp HHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHhhcCCCchHHHHHHHHHHHHHHhc
Confidence 333344445555677888988888877666555444
No 5
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.14 E-value=4.4e+02 Score=12.08 Aligned_cols=19 Identities=37% Similarity=0.723 Sum_probs=7.7
Q ss_pred hhhHHHHHH-HHHHHHHcCc
Q psy14376 204 YNNVYSSII-LLFVSGLFGE 222 (327)
Q Consensus 204 ~~~l~~~~~-~~~~~~~~~~ 222 (327)
|..++++++ +..++.+..|
T Consensus 6 yv~ifac~i~lfffaiffre 25 (30)
T d2axtt1 6 YVFIFACIIALFFFAIFFRE 25 (30)
T ss_dssp HHHHHHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHHHHhcC
Confidence 334444433 3334444434
No 6
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=2.01 E-value=8.4e+02 Score=14.97 Aligned_cols=7 Identities=0% Similarity=-0.258 Sum_probs=2.8
Q ss_pred chHHHHH
Q psy14376 273 AKACAQT 279 (327)
Q Consensus 273 ~~~v~~~ 279 (327)
+|.+.++
T Consensus 77 lEi~WTv 83 (107)
T d3ehbb2 77 IEVIWTL 83 (107)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444433
No 7
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=2.01 E-value=1.2e+03 Score=16.88 Aligned_cols=32 Identities=22% Similarity=0.224 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhcccccchhhHHHHHHhhhh
Q psy14376 121 TTVFNVLFSYFLLAQKTSFSACVCCGIIVMGF 152 (327)
Q Consensus 121 ~pi~~~i~~~~~~~e~~s~~~~~~~~l~~~Gv 152 (327)
.-+.+.+..++++.+|.-+.|++-=.+.+..+
T Consensus 34 ~~~~~~~~~~vy~s~r~~p~kyi~PG~~~l~~ 65 (248)
T d2r6gf1 34 TLILSSAGLYIFANRKAYAWRYVYPGMAGMGL 65 (248)
T ss_dssp HHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHheEEEEEccCccceehhhhHHHHHHH
Confidence 34566667778888887777765444444333
No 8
>d1uptb_ a.193.1.1 (B:) Golgi autoantigen, golgin-245 {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.93 E-value=4.2e+02 Score=14.85 Aligned_cols=28 Identities=7% Similarity=-0.067 Sum_probs=0.0
Q ss_pred hhcchHHHHHHHHHHHhCCccchhhhhHHHH
Q psy14376 270 SGTAKACAQTVIASYWYNEVKPFLWWVSNWV 300 (327)
Q Consensus 270 ~~~~~~v~~~i~~~~~~~e~~~~~~~iG~~l 300 (327)
+.|++.++ +-+...+|+.+...+++.++
T Consensus 5 ~EYLRnvL---feYMmG~E~~tlaKVi~av~ 32 (58)
T d1uptb_ 5 FEYLRKVL---FEYMMGRETKTMAKVITTVL 32 (58)
T ss_dssp HHHHHHHH---HHHHTTSSHHHHHHHHHHHT
T ss_pred HHHHHHHH---HHHHcCcchhHHHHHHHHHH
No 9
>d1y5ic1 f.21.3.1 (C:1-225) Respiratory nitrate reductase 1 gamma chain {Escherichia coli [TaxId: 562]}
Probab=1.92 E-value=2.8e+02 Score=20.19 Aligned_cols=31 Identities=10% Similarity=-0.002 Sum_probs=0.0
Q ss_pred hHHHHHHhhhhhhhhccchhHHHhhhcccCC
Q psy14376 296 VSNWVVLFGSAAYTFVKQREMEAQYNNKYSR 326 (327)
Q Consensus 296 iG~~lii~g~~l~~~~~~~~~~~~~~~~~~~ 326 (327)
++..++++|+....++|...++.+.....++
T Consensus 96 i~g~l~liG~~~ll~RR~~~~~~r~~~~~~d 126 (225)
T d1y5ic1 96 ASGVLCLIGGVLLLKRRLFSPRVRATTTGAD 126 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHSHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccccCcHHH
No 10
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=1.76 E-value=6e+02 Score=12.47 Aligned_cols=16 Identities=13% Similarity=0.227 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHH
Q psy14376 168 SGTVYGVIASASLALY 183 (327)
Q Consensus 168 ~G~~~~l~s~~~~a~~ 183 (327)
.|.++.+.-++.++-|
T Consensus 19 ~GlLlifvl~vLFssY 34 (37)
T d2axtl1 19 LGLLLILVLALLFSSY 34 (37)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Done!