RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14376
(327 letters)
>gnl|CDD|227402 COG5070, VRG4, Nucleotide-sugar transporter [Carbohydrate transport
and metabolism / Posttranslational modification, protein
turnover, chaperones / Intracellular trafficking and
secretion].
Length = 309
Score = 50.3 bits (120), Expect = 5e-07
Identities = 68/311 (21%), Positives = 118/311 (37%), Gaps = 20/311 (6%)
Query: 15 LAVSLYWLVSIITVFVNKALLSELKLDAPLFITWFQC-VISAFLCIFLHIFSLFFPNILT 73
A Y SI+ NK +LS L + + Q V L I L
Sbjct: 9 TASLSYCFSSILMTLTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLI------------LK 56
Query: 74 FPTGNPFRLNTLINVLPLSILFMSMISFNNLCLKNVGVSFYYIGRSLTTVFNVLFSYFLL 133
F FRL P+S L + MI ++ L+ + V Y I ++LT +
Sbjct: 57 FLRLVEFRLTKAKKWFPISFLLVVMIYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFF 116
Query: 134 AQKTSFSACVCCGIIVMGFWLGV--DQEDLAGSFSI--SGTVYGVIASASLALYSIHTKK 189
+ + + ++V+ + DQ+ A I G ++ S A + + +K
Sbjct: 117 GGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILNPGYLWMFTNCLSSAAFVLIMRK 176
Query: 190 VLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADL-NTAYFWLFLPIGGLCG 248
+ N + + +YNN+ S ILL S LF + +L + +F I GLC
Sbjct: 177 RIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMF--ISGLCS 234
Query: 249 FAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAY 308
I Y + +++TS T+++ G + +++ FL S + A Y
Sbjct: 235 VGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIY 294
Query: 309 TFVKQREMEAQ 319
K ++ + Q
Sbjct: 295 AVAKSKKQQNQ 305
>gnl|CDD|217390 pfam03151, TPT, Triose-phosphate Transporter family. This family
includes transporters with a specificity for triose
phosphate.
Length = 149
Score = 35.6 bits (83), Expect = 0.012
Identities = 33/149 (22%), Positives = 58/149 (38%), Gaps = 11/149 (7%)
Query: 169 GTVYGVIASASLALYSIHTKKVLPCVNNEIWLLS-----YYNNVYSSIILLFVSGLFGEL 223
G + + ASA AL I ++K+L + L+ YY + + I+LL
Sbjct: 1 GFILALAASALFALRLILSQKLL--KKKKGTKLNVLELLYYLSPVAFIVLLPGLLFSEGF 58
Query: 224 KTVQDYADLNTA----YFWLFLPIGGLCGFAIGYVTTLQIKITSPLTHNISGTAKACAQT 279
K + + L L + G+ F + TSPLT +++GT K
Sbjct: 59 KLGKFILKFFGDLKTSRYVLLLLLSGVLAFLYNLSAFGLLGRTSPLTSSVAGTVKRVVVI 118
Query: 280 VIASYWYNEVKPFLWWVSNWVVLFGSAAY 308
V++ + + FL + + + G Y
Sbjct: 119 VLSVIIFGDPVTFLNILGLAIAILGVVLY 147
>gnl|CDD|129898 TIGR00817, tpt, Tpt phosphate/phosphoenolpyruvate translocator.
The 6-8 TMS Triose-phosphate Transporter (TPT) Family
(TC 2.A.7.9)Functionally characterized members of the
TPT family are derived from the inner envelope membranes
of chloroplasts and nongreen plastids of plants.
However,homologues are also present in yeast.
Saccharomyces cerevisiae has three functionally
uncharacterized TPT paralogues encoded within its
genome. Under normal physiologicalconditions,
chloroplast TPTs mediate a strict antiport of
substrates, frequently exchanging an organic three
carbon compound phosphate ester for inorganic phosphate
(Pi).Normally, a triose-phosphate, 3-phosphoglycerate,
or another phosphorylated C3 compound made in the
chloroplast during photosynthesis, exits the organelle
into thecytoplasm of the plant cell in exchange for Pi.
However, experiments with reconstituted translocator in
artificial membranes indicate that transport can also
occur by achannel-like uniport mechanism with up to
10-fold higher transport rates. Channel opening may be
induced by a membrane potential of large magnitude
and/or by high substrateconcentrations. Nongreen plastid
and chloroplast carriers, such as those from maize
endosperm and root membranes, mediate transport of C3
compounds phosphorylated atcarbon atom 2, particularly
phosphenolpyruvate, in exchange for Pi. These are the
phosphoenolpyruvate:Pi antiporters (PPT). Glucose-6-P
has also been shown to be asubstrate of some plastid
translocators (GPT). The three types of proteins (TPT,
PPT and GPT) are divergent in sequence as well as
substrate specificity, but their substratespecificities
overlap [Hypothetical proteins, Conserved].
Length = 302
Score = 32.4 bits (74), Expect = 0.25
Identities = 55/275 (20%), Positives = 106/275 (38%), Gaps = 25/275 (9%)
Query: 19 LYWLVSIITVFVNKALLSELKLDAPLFIT-WFQCVISAFLCIFLHIFSLFFPNILTFPTG 77
L++ +++ NK LL +F +F+ +IS + + S P
Sbjct: 9 LWYFLNVYFNIYNKKLL-------NVFPYPYFKTLISLAVGSLYCLLSW----SSGLPKR 57
Query: 78 NPFRLNTLINVLPLSILFMSMISFNNLCLKNVGVSFYYIGRSLTTVFNVLFSYFLLAQKT 137
L +LP++I+ +N+ L V VSF + +++ F+V+ S F L Q+
Sbjct: 58 LKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEF 117
Query: 138 SFSACVCCGIIVMGFWLGVDQEDLAGSFSISGTVYGVIASASLALYSIHTKKVLPCVNNE 197
+ + IV G L D E SF+ +G + +I++ + +I +KK + + +
Sbjct: 118 PSTLWLSLLPIVGGVALASDTE---LSFNWAGFLSAMISNITFVSRNIFSKKAMTIKSLD 174
Query: 198 IWLLSYYNNVYSSIILLFVSGLFGELKTVQDY-------ADLNTAYFWLFLPIGGLCGFA 250
L Y ++ S +L + + + ++ Y + G
Sbjct: 175 KTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMG-FFHF 233
Query: 251 IGYVTTLQIKITSPLTHNISGTAKACAQTVIASYW 285
V + + SPLTH++ K VI
Sbjct: 234 YQQVAFMLLGRVSPLTHSVGNCMKRVV--VIVVSI 266
>gnl|CDD|223769 COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT)
superfamily [Carbohydrate transport and metabolism /
Amino acid transport and metabolism / General function
prediction only].
Length = 292
Score = 31.8 bits (72), Expect = 0.46
Identities = 34/208 (16%), Positives = 65/208 (31%), Gaps = 15/208 (7%)
Query: 52 VISAFLCIFLHIFSLFFPNILTFPTGNPFRLNTLINVLPLSILFMSMISFNNLC----LK 107
+ L + L L L +L + ++ L LK
Sbjct: 33 LDPFLFAAALRFLIAALLLLPLLLLEPRGLRPALRPWLLLLLLALLGLALPFLLLFLALK 92
Query: 108 NVGVSFYYIGRSLTTVFNVLFSYFLLAQ-KTSFSACVCCGIIVMGFWLGVDQEDLAGSFS 166
S + L +F L + LL + S + + + G L + G S
Sbjct: 93 YTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILS 152
Query: 167 ISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTV 226
+ G + + A+ ALY+ K+ L + ++ L ++ L L +
Sbjct: 153 LLGLLLALAAALLWALYTALVKR----------LSRLGPVTLALLLQLLLALLLLLLFFL 202
Query: 227 QDYADLNTAYFWLFLPIGGLCGFAIGYV 254
+ + WL L G+ + Y+
Sbjct: 203 SGFGAPILSRAWLLLLYLGVFSTGLAYL 230
>gnl|CDD|240725 cd12279, RRM_TUT1, RNA recognition motif in speckle targeted
PIP5K1A-regulated poly(A) polymerase (Star-PAP) and
similar proteins. This subfamily corresponds to the RRM
of Star-PAP, also termed RNA-binding motif protein 21
(RBM21), which is a ubiquitously expressed U6
snRNA-specific terminal uridylyltransferase (U6-TUTase)
essential for cell proliferation. Although it belongs to
the well-characterized poly(A) polymerase protein
superfamily, Star-PAP is highly divergent from both, the
poly(A) polymerase (PAP) and the terminal uridylyl
transferase (TUTase), identified within the editing
complexes of trypanosomes. Star-PAP predominantly
localizes at nuclear speckles and catalyzes
RNA-modifying nucleotidyl transferase reactions. It
functions in mRNA biosynthesis and may be regulated by
phosphoinositides. It binds to glutathione S-transferase
(GST)-PIPKIalpha. Star-PAP preferentially uses ATP as a
nucleotide substrate and possesses PAP activity that is
stimulated by PtdIns4,5P2. It contains an N-terminal
C2H2-type zinc finger motif followed by an RNA
recognition motif (RRM), also termed RBD (RNA binding
domain) or RNP (ribonucleoprotein domain), a split PAP
domain linked by a proline-rich region, a PAP catalytic
and core domain, a PAP-associated domain, an RS repeat,
and a nuclear localization signal (NLS). .
Length = 74
Score = 27.7 bits (62), Expect = 1.7
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 147 IIVMGFWLGVDQEDLAGSFSISGTVYGVIASASLALYSI 185
+ V GF G +E L FS G V VI +Y+I
Sbjct: 5 VFVSGFKRGTSEEQLMDYFSAFGPVMNVIMDKDKGVYAI 43
>gnl|CDD|237883 PRK14991, PRK14991, tetrathionate reductase subunit A; Provisional.
Length = 1031
Score = 28.4 bits (64), Expect = 5.7
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 241 LPIGGLCGFAIGYVTTLQIKITSPLTHNISGTA 273
L GGL FA GY T + + L + SG
Sbjct: 13 LAAGGLAAFAAGYSDTAK-RAAKGLLNGTSGKP 44
>gnl|CDD|206355 pfam14187, DUF4310, Domain of unknown function (DUF4310). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 214 and 231 amino
acids in length.
Length = 210
Score = 28.1 bits (63), Expect = 6.0
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 237 FWLFLPIGGLCGFAIGYVTTLQIKITSPLTHNISGT 272
F L L G + G IGY+ L K T +++ G
Sbjct: 111 FALSLLTGAVLGLIIGYIIILIRKFTINQSNSTFGA 146
>gnl|CDD|177663 PLN00026, PLN00026, aquaporin NIP; Provisional.
Length = 298
Score = 27.5 bits (61), Expect = 9.2
Identities = 23/85 (27%), Positives = 31/85 (36%), Gaps = 10/85 (11%)
Query: 243 IGGLCGFAIGYVTTLQIKITSPLT----HNISGTAKACAQTVIASYWYNEVKPFLWWVSN 298
+G L G A+G L I + P T + + A A + W V P L
Sbjct: 214 VGELAGIAVGATVMLNILVAGPSTGGSMNPVRTLGPAVAAGNYRAIWIYLVAPTLG---- 269
Query: 299 WVVLFGSAAYTFVKQREMEAQYNNK 323
L G+ YT VK RE +
Sbjct: 270 --ALAGAGTYTAVKLREEDGDPPRP 292
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.328 0.140 0.445
Gapped
Lambda K H
0.267 0.0755 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,544,242
Number of extensions: 1611708
Number of successful extensions: 2568
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2521
Number of HSP's successfully gapped: 176
Length of query: 327
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 230
Effective length of database: 6,635,264
Effective search space: 1526110720
Effective search space used: 1526110720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 59 (26.5 bits)