RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14376
(327 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.5 bits (102), Expect = 7e-05
Identities = 40/244 (16%), Positives = 70/244 (28%), Gaps = 89/244 (36%)
Query: 106 LKNVGVSFYYIGRSLTTVFNVLFSYFLLAQKTSFSACVCCGIIVMGFWLGVDQEDLAGSF 165
L ++ +S IG + Q + V + LG +L
Sbjct: 231 LLSIPISCPLIG---------------VIQLAHY--VVTAKL------LGFTPGELRSYL 267
Query: 166 S-ISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGL----- 219
+G G++ + ++A + W S++ +V +I +LF G+
Sbjct: 268 KGATGHSQGLVTAVAIAETD--S-----------WE-SFFVSVRKAITVLFFIGVRCYEA 313
Query: 220 FG----ELKTVQDYADLNTAYFWLFLPIGGLCGFAIGYVTTLQIKITSP-LTHNISGTAK 274
+ ++D + N G SP L +IS +
Sbjct: 314 YPNTSLPPSILEDSLENN-------------EGVP------------SPML--SISNLTQ 346
Query: 275 ACAQTVIASYWYNEVKPFLWWVS--------NWVVLFGSAA--YTFVKQ-REMEAQYNNK 323
Q + N P V N VV G Y R+ +A
Sbjct: 347 EQVQDYVNK--TNSHLPAGKQVEISLVNGAKNLVVS-GPPQSLYGLNLTLRKAKAPSGLD 403
Query: 324 YSRV 327
SR+
Sbjct: 404 QSRI 407
Score = 41.6 bits (97), Expect = 4e-04
Identities = 52/285 (18%), Positives = 99/285 (34%), Gaps = 77/285 (27%)
Query: 23 VSIITVF----VNKALLSELKLDAPLFITWFQCVISAFLC-IFLHIFSL---------FF 68
++ +F EL+ L+ T + ++ + + L F
Sbjct: 154 AQLVAIFGGQGNTDDYFEELRD---LYQT-YHVLVGDLIKFSAETLSELIRTTLDAEKVF 209
Query: 69 P---NI---LTFPTGNPFRLNTLINV---LPLSILFMSMISFNNLCLKNVGVS---FYYI 116
NI L P+ P + L+++ PL I + + + K +G +
Sbjct: 210 TQGLNILEWLENPSNTP-DKDYLLSIPISCPL-IGVIQLAHYVVTA-KLLGFTPGELRSY 266
Query: 117 GRSLTTVFNVLFSYFLLAQ-KT--SFSACVCCGIIVMGFWLGVDQEDLAGSFSISGTVY- 172
+ T L + +A+ + SF V I V+ F++GV + + S+ ++
Sbjct: 267 LKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL-FFIGVRCYEAYPNTSLPPSILE 325
Query: 173 -------GVIASASLALYSIHTKKVLPCVN--NEIWLLSYYNNVYSSIILLF-------V 216
GV S L++ ++ ++V VN N L V I L V
Sbjct: 326 DSLENNEGV-PSPMLSISNLTQEQVQDYVNKTNSH--LPAGKQVE---ISLVNGAKNLVV 379
Query: 217 SG----LFG---ELKTVQDYADLNTA----------YFWLFLPIG 244
SG L+G L+ + + L+ + + FLP+
Sbjct: 380 SGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVA 424
Score = 28.5 bits (63), Expect = 4.2
Identities = 28/151 (18%), Positives = 45/151 (29%), Gaps = 66/151 (43%)
Query: 120 LTTV----FNVLFSYFLLAQKTSF--------SACVCCGIIVMGFWLGVDQEDLAGSFSI 167
LT + F L S L+ +F +A A SI
Sbjct: 1736 LTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASL----------------ADVMSI 1779
Query: 168 SGTV-----------------------YGVIA------SASLALYSIHTKKVLPCVNNEI 198
V YG+IA +AS + ++ + V+ V
Sbjct: 1780 ESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEAL--QYVVERVGKRT 1837
Query: 199 -WLLSYYN-NVYSSIILLFVSGLFGELKTVQ 227
WL+ N NV + V+ G+L+ +
Sbjct: 1838 GWLVEIVNYNVENQQY---VAA--GDLRALD 1863
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.56
Identities = 6/12 (50%), Positives = 7/12 (58%)
Query: 32 KALLSELKLDAP 43
K L + LKL A
Sbjct: 23 KKLQASLKLYAD 34
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.0 bits (69), Expect = 0.71
Identities = 37/235 (15%), Positives = 72/235 (30%), Gaps = 49/235 (20%)
Query: 27 TVFVNKALLSELKLDAPLF-ITW--FQCVISAFLCI-----FLHIFSLFFPNILTFPTGN 78
T LS F I W + S + L+ + + +
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 79 PFRLNTLINVLPLSILFMSMISFNN--LCLKNV----GVSFYYIG-RSLTTVFNVLFSYF 131
R++++ L L S + N L L NV + + + + L T + F
Sbjct: 224 KLRIHSIQAEL--RRLLKSK-PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF 280
Query: 132 LLAQKTSFSACVCCGIIVMGF-----------WLGVDQEDLAGS-FSISGTVYGVIASAS 179
L A T+ + M +L +DL + + +IA S
Sbjct: 281 LSAATTTH---ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA-ES 336
Query: 180 LALYSIHTKKVLPCVNNEIWLLSYYN-NVYSSIILLFVSGL-FGELKTVQDYADL 232
+ + + W + N + ++II ++ L E + + + L
Sbjct: 337 I--------RDGLATWDN-WK--HVNCDKLTTIIESSLNVLEPAEYR--KMFDRL 378
>3mgb_A TEG12; sulfotransferase, glycopeptide, antibiotic, transferase-anti
complex; HET: GHP 3MY 3FG OMY PAP; 2.04A {Uncultured
soil bacterium} PDB: 3mgc_A* 3mg9_A* 3nib_A*
Length = 319
Score = 28.6 bits (64), Expect = 2.8
Identities = 19/127 (14%), Positives = 41/127 (32%), Gaps = 20/127 (15%)
Query: 47 TWFQCVISA-------FLCIFLHIFSLFFPNILTFPTGNPFRLNT--LINV-LPLSILFM 96
TW +C+++A + + SL +L F P L+ L + +
Sbjct: 50 TWVRCMLAAYITGKAPQVWNDIDAESLTLEAMLRFGDLPPAEPMEPVLVKTHLKADVPVL 109
Query: 97 SMISFNNLCL-------KNVGVSFYY---IGRSLTTVFNVLFSYFLLAQKTSFSACVCCG 146
+ + +++ +S I R F+ + ++A G
Sbjct: 110 GLYGEATAKVLYLVRNPRDMLLSSMRMASISRDDVEKSRDFARKFIANEGLGWNALGAGG 169
Query: 147 IIVMGFW 153
+ +G W
Sbjct: 170 GVGLGSW 176
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.140 0.445
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,854,888
Number of extensions: 274838
Number of successful extensions: 487
Number of sequences better than 10.0: 1
Number of HSP's gapped: 482
Number of HSP's successfully gapped: 19
Length of query: 327
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 233
Effective length of database: 4,077,219
Effective search space: 949992027
Effective search space used: 949992027
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 57 (26.0 bits)